Genetic Products Differentially Expressed In Tumors And The Use Thereof

Abstract

The present technology relates to the identification of genetic products expressed in association with tumors and to coding nucleic acids for the expressed products. An embodiment of the present technology also relates to the therapy and diagnosis of disease in which the genetic products are aberrantly expressed in association with tumors, proteins, polypeptides and peptides which are expressed in association with tumors, and to the nucleic acids coding for the polypeptides, peptides and proteins.

Description

[0001] This application is a continuation application of U.S. patent application Ser. No. 12/326,997, which was filed on Dec. 3, 2008 and is a continuation application of U.S. patent application Ser. No. 10/537,002, which was filed on May 20, 2005, which is a National Stage Entry of PCT/EP03/13091, which was filed on Nov. 21, 2003 and claimed priority to German Patent Application Number 102 54 601.0, which was filed on Nov. 22, 2002. The contents of U.S. patent application Ser. Nos. 10/537,002 and 12/326,997, international patent application number PCT/EP03/13091, and German Patent Application Number 102 54 601.0 are incorporated herein by reference in their entireties.

BACKGROUND OF THE INVENTION

[0002] Despite interdisciplinary approaches and exhaustive use of classical therapeutic procedures, cancers are still among the leading causes of death. More recent therapeutic concepts aim at incorporating the patient's immune system into the overall therapeutic concept by using recombinant tumor vaccines and other specific measures such as antibody therapy. A prerequisite for the success of such a strategy is the recognition of tumor-specific or tumor-associated antigens or epitopes by the patient's immune system whose effector functions are to be interventionally enhanced. Tumor cells biologically differ substantially from their nonmalignant cells of origin. These differences are due to genetic alterations acquired during tumor development and result, inter alia, also in the formation of qualitatively or quantitatively altered molecular structures in the cancer cells. Tumor-associated structures of this kind which are recognized by the specific immune system of the tumor-harboring host are referred to as tumor-associated antigens. The specific recognition of tumor-associated antigens involves cellular and humoral mechanisms which are two functionally interconnected units: CD4⁺ and CD8⁺ T lymphocytes recognize the processed antigens presented on the molecules of the MHC (major histocompatibility complex) classes II and I, respectively, while B lymphocytes produce circulating antibody molecules which bind directly to unprocessed antigens. The potential clinical-therapeutical importance of tumor-associated antigens results from the fact that the recognition of antigens on neoplastic cells by the immune system leads to the initiation of cytotoxic effector mechanisms and, in the presence of T helper cells, can cause elimination of the cancer cells (Pardoll, Nat. Med. 4:525-31, 1998). Accordingly, a central aim of tumor immunology is to molecularly define these structures. The molecular nature of these antigens has been enigmatic for a long time. Only after development of appropriate cloning techniques has it been possible to screen cDNA expression libraries of tumors systematically for tumor-associated antigens by analyzing the target structures of cytotoxic T lymphocytes (CTL) (van der Bruggen et al., Science 254:1643-7, 1991) or by using circulating autoantibodies (Sahin et al., Curr. Opin. Immunol. 9:709-16, 1997) as probes. To this end, cDNA expression libraries were prepared from fresh tumor tissue and recombinantly expressed as proteins in suitable systems. Immunoeffectors isolated from patients, namely CTL clones with tumor-specific lysis patterns, or circulating autoantibodies were utilized for cloning the respective antigens.

[0003] In recent years a multiplicity of antigens have been defined in various neoplasias by these approaches. However, the probes utilized for antigen identification in the classical methods illustrated above are immunoeffectors (circulating autoantibodies or CTL clones) from patients usually having already advanced cancer. A number of data indicate that tumors can lead, for example, to tolerization and anergization of T cells and that, during the course of the disease, especially those specificities which could cause effective immune recognition are lost from the immunoeffector repertoire. Current patient studies have not yet produced any solid evidence of a real action of the previously found and utilized tumor-associated antigens. Accordingly, it cannot be ruled out that proteins evoking spontaneous immune responses are the wrong target structures.

BRIEF SUMMARY OF THE INVENTION

[0004] It was the object of the present technology to provide target structures for a diagnosis and therapy cancers.

[0005] According to the present technology, this object is achieved by the subject matter of the claims.

[0006] According to the present technology, a strategy for identifying and providing antigens expressed in association with a tumor and the nucleic acids coding therefor was pursued. This strategy is based on the fact that particular genes which are expressed in an organ specific manner, e.g. exclusively in colon, lung or kidney tissue, are reactivated also in tumor cells of the respective organs and moreover in tumor cells of other tissues in an ectopic and forbidden manner. First, data mining produces a list as complete as possible of all known organ-specific genes which are then evaluated for their aberrant activation in different tumors by expression analyses by means of specific RT-PCR. Data mining is a known method of identifying tumor-associated genes. In the conventional strategies, however, transcriptoms of normal tissue libraries are usually subtracted electronically from tumor tissue libraries, with the assumption that the remaining genes are tumor-specific (Schmitt et al., Nucleic Acids Res. 27:4251-60, 1999; Vasmatzis et al., Proc. Natl. Acad. Sci. USA. 95:300-4, 1998; Scheurle et al., Cancer Res. 60:4037-43, 2000).

[0007] The concept of the present technology, which has proved much more successful, however, is based on utilizing data mining for electronically extracting all organ-specific genes and then evaluating said genes for expression in tumors.

[0008] The present technology thus relates in one aspect to a strategy for identifying tissue-specific genes differentially expressed in tumors. Said strategy combines data mining of public sequence libraries ("in silico") with subsequent evaluating laboratory-experimental ("wet bench") studies.

[0009] According to the present technology, a combined strategy based on two different bioinformatic scripts enabled new tumor genes to be identified. These have previously been classified as being purely organ-specific. The finding that these genes are aberrantly activated in tumor cells allows them to be assigned a substantially new quality with functional implications. According to the present technology, these tumor-associated genes and the genetic products encoded thereby were identified and provided independently of an immunogenic action.

[0010] The tumor-associated antigens identified according to the present technology have an amino acid sequence encoded by a nucleic acid which is selected from the group consisting of (a) a nucleic acid which comprises a nucleic acid sequence selected from the group consisting of SEQ ID NOs: 1-8, 41-44, 51-59, 84, 117, and 119, a part or derivative thereof, (b) a nucleic acid which hybridizes with the nucleic acid of (a) under stringent conditions, (c) a nucleic acid which is degenerate with respect to the nucleic acid of (a) or (b), and (d) a nucleic acid which is complementary to the nucleic acid of (a), (b) or (c). In a preferred embodiment, a tumor-associated antigen identified according to the present technology has an amino acid sequence encoded by a nucleic acid which is selected from the group consisting of SEQ ID NOs: 1-8, 41-44, 51-59, 84, 117, and 119. In a further preferred embodiment, a tumor-associated antigen identified according to the present technology comprises an amino acid sequence selected from the group consisting of SEQ ID NOs: 9-19, 45-48, 60-66, 85, 90-97, 100-102, 105, 106, 111-116, 118, 120, 123, 124, and 135-137, a part or derivative thereof.

[0011] The present technology generally relates to the use of tumor-associated antigens identified according to the present technology or of parts or derivatives thereof, of nucleic acids coding therefor or of nucleic acids directed against said coding nucleic acids or of antibodies directed against the tumor-associated antigens identified according to the present technology or parts or derivatives thereof for therapy and diagnosis. This utilization may relate to individual but also to combinations of two or more of these antigens, functional fragments, nucleic acids, antibodies, etc., in one embodiment also in combination with other tumor-associated genes and antigens for diagnosis, therapy and progress control.

[0012] Preferred diseases for a therapy and/or diagnosis are those in which one or more of the tumor-associated antigens identified according to the present technology are selectively expressed or abnormally expressed.

[0013] The present technology also relates to nucleic acids and genetic products which are expressed in association with a tumor cell.

[0014] Furthermore, the present technology relates to genetic products, i.e. nucleic acids and proteins or peptides, which are produced by altered splicing (splice variants) of known genes or altered translation using alternative open reading frames. In this aspect the present technology relates to nucleic acids which comprise a nucleic acid sequence selected from the group consisting of sequences according to SEQ ID NOs: 3-5 of the sequence listing. Moreover, in this aspect, the present technology relates to proteins or peptides which comprise an amino acid sequence selected from the group consisting of the sequences according to SEQ ID NOs: 10 and 12-14 of the sequence listing. The splice variants of the present technology can be used according to the present technology as targets for diagnosis and therapy of tumor diseases.

[0015] In particular, the present technology relates to the amino acid sequence according to SEQ ID NO: 10 of the sequence listing which is encoded by an alternative open reading frame identified according to the present technology and differs from the previously described protein sequence (SEQ ID NO: 9) in additional 85 amino acids at the N terminus of the protein.

[0016] Very different mechanisms may cause splice variants to be produced, for example

[0017] utilization of variable transcription initiation sites

[0018] utilization of additional exons

[0019] complete or incomplete splicing out of single or two or more exons,

[0020] splice regulator sequences altered via mutation (deletion or generation of new donor/acceptor sequences),

[0021] incomplete elimination of intron sequences.

[0022] Altered splicing of a gene results in an altered transcript sequence (splice variant). Translation of a splice variant in the region of its altered sequence results in an altered protein which may be distinctly different in the structure and function from the original protein. Tumor-associated splice variants may produce tumor-associated transcripts and tumor-associated proteins/antigens. These may be utilized as molecular markers both for detecting tumor cells and for therapeutic targeting of tumors. Detection of tumor cells, for example in blood, serum, bone marrow, sputum, bronchial lavage, bodily secretions and tissue biopsies, may be carried out according to the present technology, for example, after extraction of nucleic acids by PCR amplification with splice variant-specific oligonucleotides. In particular, pairs of primers are suitable as oligonucleotides at least one of which binds to the region of the splice variant which is tumor-associated under stringent conditions. According to the present technology, oligonucleotides described for this purpose in the examples are suitable, in particular oligonucleotides which have or comprise a sequence selected from SEQ ID NOs: 34-36, 39, 40, and 107-110 of the sequence listing. According to the present technology, all sequence-dependent detection systems are suitable for detection. These are, apart from PCR, for example gene chip/microarray systems, Northern blot, RNAse protection assays (RDA) and others. All detection systems have in common that detection is based on a specific hybridization with at least one splice variant-specific nucleic acid sequence. However, tumor cells may also be detected according to the present technology by antibodies which recognize a specific epitope encoded by the splice variant. Said antibodies may be prepared by using for immunization peptides which are specific for said splice variant. In this aspect, the present technology relates, in particular, to peptides which have or comprise a sequence selected from SEQ ID NOs: 17-19, 111-115, 120, and 137 of the sequence listing and specific antibodies which are directed thereto. Suitable for immunization are particularly the amino acids whose epitopes are distinctly different from the variant(s) of the genetic product, which is (are) preferably produced in healthy cells. Detection of the tumor cells with antibodies may be carried out here on a sample isolated from the patient or as imaging with intravenously administered antibodies. In addition to diagnostic usability, splice variants having new or altered epitopes are attractive targets for immunotherapy. The epitopes of the present technology may be utilized for targeting therapeutically active monoclonal antibodies or T lymphocytes. In passive immunotherapy, antibodies or T lymphocytes which recognize splice variant-specific epitopes are adoptively transferred here. As in the case of other antigens, antibodies may be generated also by using standard technologies (immunization of animals, panning strategies for isolation of recombinant antibodies) with utilization of polypeptides which include these epitopes. Alternatively, it is possible to utilize for immunization nucleic acids coding for oligo- or polypeptides which contain said epitopes. Various techniques for in vitro or in vivo generation of epitope-specific T lymphocytes are known and have been described in detail (for example Kessler J H, et al. 2001, Sahin et al., 1997) and are likewise based on utilizing oligo- or polypeptides which contain the splice variant-specific epitopes or nucleic acids coding for said oligo- or polypeptides. Oligo- or polypeptides which contain the splice variant-specific epitopes or nucleic acids coding for said polypeptides may also be used as pharmaceutically active substances in active immunotherapy (vaccination, vaccine therapy).

[0023] The present technology also describes proteins which differ in nature and degree of their secondary modifications in normal and tumor tissue (for example Durand & Seta, 2000; Clin. Chem. 46: 795-805; Hakomori, 1996; Cancer Res. 56: 5309-18).

[0024] The analysis of protein modifications can be done in Western blots. In particular, glycosylations which as a rule have a size of several kDa result in a higher overall mass of the target protein which can be separated in an SDS-PAGE. For the detection of specific O- and N-glycosidic bonds protein lysates are incubated with O- or N-glycosylases (according to the instructions of the respective manufactures, for example, PNgase, endoglycosidase F, endoglycosidase H, Roche Diagnostics) prior to denaturation using SDS. Thereafter, a Western blot is performed. If the size of target protein is reduced a specific glycosylation can be detected in this manner following incubation with a glycosidase and thus, also the tumor specificity of a modification can be analyzed. Protein regions which are differentially glycosylated in tumor cells and healthy cells are of particular interest. Such differences in glycosylation, however, have hitherto only been described for a few cell surface proteins (for example, Muc1).

[0025] According to the present technology, it was possible to detect a differential glycosylation for Claudin-18 in tumors. Gastrointestinal carcinomas, pancreas carcinomas, esophagus tumors, prostate tumors as well as lung tumors have a form of Claudin-18 which is glycosylated at a lower level. Glycosylation in healthy tissues masks protein epitopes of Claudin-18 which are not covered on tumor cells due to lacking glycosylation. Correspondingly it is possible according to the present technology to select ligands and antibodies which bind to these domains. Such ligands and antibodies according to the present technology do not bind to Claudin-18 on healthy cells since here the epitopes are covered due to glycosylation.

[0026] As has been described above for protein epitopes which are derived from tumor-associated splice variants it is thus possible to use the differential glycosylation to distinguish normal cells and tumor cells with diagnostic as well as therapeutic intention.

[0027] In one aspect, the present technology relates to a pharmaceutical composition comprising an agent which recognizes the tumor-associated antigen identified according to the present technology and which is preferably selective for cells which have expression or abnormal expression of a tumor-associated antigen identified according to the present technology. In particular embodiments, said agent may cause induction of cell death, reduction in cell growth, damage to the cell membrane or secretion of cytokines and preferably have a tumor-inhibiting activity. In one embodiment, the agent is an antisense nucleic acid which hybridizes selectively with the nucleic acid coding for the tumor-associated antigen. In a further embodiment, the agent is an antibody which binds selectively to the tumor-associated antigen, in particular a complement-activated or toxin conjugated antibody which binds selectively to the tumor-associated antigen. In a further embodiment, the agent comprises two or more agents which each selectively recognize different tumor-associated antigens, at least one of which is a tumor-associated antigen identified according to the present technology. Recognition needs not be accompanied directly with inhibition of activity or expression of the antigen. In this aspect of the present technology, the antigen selectively limited to tumors preferably serves as a label for recruiting effector mechanisms to this specific location. In a preferred embodiment, the agent is a cytotoxic T lymphocyte which recognizes the antigen on an HLA molecule and lyses the cells labeled in this way. In a further embodiment, the agent is an antibody which binds selectively to the tumor-associated antigen and thus recruits natural or artificial effector mechanisms to said cell. In a further embodiment, the agent is a T helper lymphocyte which enhances effector functions of other cells specifically recognizing said antigen.

[0028] In one aspect, the present technology relates to a pharmaceutical composition comprising an agent which inhibits expression or activity of a tumor-associated antigen identified according to the present technology. In a preferred embodiment, the agent is an antisense nucleic acid which hybridizes selectively with the nucleic acid coding for the tumor-associated antigen. In a further embodiment, the agent is an antibody which binds selectively to the tumor-associated antigen. In a further embodiment, the agent comprises two or more agents which each selectively inhibit expression or activity of different tumor-associated antigens, at least one of which is a tumor-associated antigen identified according to the present technology.

[0029] The present technology furthermore relates to a pharmaceutical composition which comprises an agent which, when administered, selectively increases the amount of complexes between an HLA molecule and a peptide epitope from the tumor-associated antigen identified according to the present technology. In one embodiment, the agent comprises one or more components selected from the group consisting of (i) the tumor-associated antigen or a part thereof, (ii) a nucleic acid which codes for said tumor-associated antigen or a part thereof, (iii) a host cell which expresses said tumor-associated antigen or a part thereof, and (iv) isolated complexes between peptide epitopes from said tumor-associated antigen and an MHC molecule. In one embodiment, the agent comprises two or more agents which each selectively increase the amount of complexes between MHC molecules and peptide epitopes of different tumor-associated antigens, at least one of which is a tumor-associated antigen identified according to the present technology.

[0030] The present technology furthermore relates to a pharmaceutical composition which comprises one or more components selected from the group consisting of (i) a tumor-associated antigen identified according to the present technology or a part thereof, (ii) a nucleic acid which codes for a tumor-associated antigen identified according to the present technology or for a part thereof, (iii) an antibody which binds to a tumor-associated antigen identified according to the present technology or to a part thereof, (iv) an antisense nucleic acid which hybridizes specifically with a nucleic acid coding for a tumor-associated antigen identified according to the present technology, (v) a host cell which expresses a tumor-associated antigen identified according to the present technology or a part thereof, and (vi) isolated complexes between a tumor-associated antigen identified according to the present technology or a part thereof and an HLA molecule.

[0031] A nucleic acid coding for a tumor-associated antigen identified according to the present technology or for a part thereof may be present in the pharmaceutical composition in an expression vector and functionally linked to a promoter.

[0032] A host cell present in a pharmaceutical composition of the present technology may secrete the tumor-associated antigen or the part thereof, express it on the surface or may additionally express an HLA molecule which binds to said tumor-associated antigen or said part thereof. In one embodiment, the host cell expresses the HLA molecule endogenously. In a further embodiment, the host cell expresses the HLA molecule and/or the tumor-associated antigen or the part thereof in a recombinant manner. The host cell is preferably nonproliferative. In a preferred embodiment, the host cell is an antigen-presenting cell, in particular a dendritic cell, a monocyte or a macrophage.

[0033] An antibody present in a pharmaceutical composition of the present technology may be a monoclonal antibody. In further embodiments, the antibody is a chimeric or humanized antibody, a fragment of a natural antibody or a synthetic antibody, all of which may be produced by combinatory techniques. The antibody may be coupled to a therapeutically or diagnostically useful agent.

[0034] An antisense nucleic acid present in a pharmaceutical composition of the present technology may comprise a sequence of 6-50, in particular 10-30, 15-30 and 20-30, contiguous nucleotides of the nucleic acid coding for the tumor-associated antigen identified according to the present technology.

[0035] In further embodiments, a tumor-associated antigen, provided by a pharmaceutical composition of the present technology either directly or via expression of a nucleic acid, or a part thereof binds to MHC molecules on the surface of cells, said binding preferably causing a cytolytic response and/or inducing cytokine release.

[0036] A pharmaceutical composition of the present technology may comprise a pharmaceutically compatible carrier and/or an adjuvant. The adjuvant may be selected from saponin, GM-CSF, CpG nucleotides, RNA, a cytokine or a chemokine. A pharmaceutical composition of the present technology is preferably used for the treatment of a disease characterized by selective expression or abnormal expression of a tumor-associated antigen. In a preferred embodiment, the disease is cancer.

[0037] The present technology furthermore relates to methods of treating or diagnosing a disease characterized by expression or abnormal expression of one of more tumor-associated antigens. In one embodiment, the treatment comprises administering a pharmaceutical composition of the present technology.

[0038] In one aspect, the present technology relates to a method of diagnosing a disease characterized by expression or abnormal expression of a tumor-associated antigen identified according to the present technology. The method comprises detection of (i) a nucleic acid which codes for the tumor-associated antigen or of a part thereof and/or (ii) detection of the tumor-associated antigen or of a part thereof, and/or (iii) detection of an antibody to the tumor-associated antigen or to a part thereof and/or (iv) detection of cytotoxic or T helper lymphocytes which are specific for the tumor-associated antigen or for a part thereof in a biological sample isolated from a patient. In particular embodiments, detection comprises (i) contacting the biological sample with an agent which binds specifically to the nucleic acid coding for the tumor-associated antigen or to the part thereof, to said tumor-associated antigen or said part thereof, to the antibody or to cytotoxic or T helper lymphocytes specific for the tumor-associated antigen or parts thereof, and (ii) detecting the formation of a complex between the agent and the nucleic acid or the part thereof, the tumor-associated antigen or the part thereof, the antibody or the cytotoxic or T helper lymphocytes. In one embodiment, the disease is characterized by expression or abnormal expression of two or more different tumor-associated antigens and detection comprises detection of two or more nucleic acids coding for said two or more different tumor-associated antigens or of parts thereof, detection of two or more different tumor-associated antigens or of parts thereof, detection of two or more antibodies binding to said two or more different tumor-associated antigens or to parts thereof or detection of two or more cytotoxic or T helper lymphocytes specific for said two or more different tumor-associated antigens. In a further embodiment, the biological sample isolated from the patient is compared to a comparable normal biological sample.

[0039] In a further aspect, the present technology relates to a method for determining regression, course or onset of a disease characterized by expression or abnormal expression of a tumor-associated antigen identified according to the present technology, which method comprises monitoring a sample from a patient who has said disease or is suspected of falling ill with said disease, with respect to one or more parameters selected from the group consisting of (i) the amount of nucleic acid which codes for the tumor-associated antigen or of a part thereof, (ii) the amount of the tumor-associated antigen or a part thereof, (iii) the amount of antibodies which bind to the tumor-associated antigen or to a part thereof, and (iv) the amount of cytolytic T cells or T helper cells which are specific for a complex between the tumor-associated antigen or a part thereof and an MHC molecule. The method preferably comprises determining the parameter(s) in a first sample at a first point in time and in a further sample at a second point in time and in which the course of the disease is determined by comparing the two samples. In particular embodiments, the disease is characterized by expression or abnormal expression of two or more different tumor-associated antigens and monitoring comprises monitoring (i) the amount of two or more nucleic acids which code for said two or more different tumor-associated antigens or of parts thereof, and/or (ii) the amount of said two or more different tumor-associated antigens or of parts thereof, and/or (iii) the amount of two or more antibodies which bind to said two or more different tumor-associated antigens or to parts thereof, and/or (iv) the amount of two or more cytolytic T cells or of T helper cells which are specific for complexes between said two or more different tumor-associated antigens or of parts thereof and MHC molecules.

[0040] According to the present technology, detection of a nucleic acid or of a part thereof or monitoring the amount of a nucleic acid or of a part thereof may be carried out using a polynucleotide probe which hybridizes specifically to said nucleic acid or said part thereof or may be carried out by selective amplification of said nucleic acid or said part thereof. In one embodiment, the polynucleotide probe comprises a sequence of 6-50, in particular 10-30, 15-30 and 20-30, contiguous nucleotides of said nucleic acid.

[0041] In particular embodiments, the tumor-associated antigen to be detected or the part thereof is present intracellularly or on the cell surface. According to the present technology, detection of a tumor-associated antigen or of a part thereof or monitoring the amount of a tumor-associated antigen or of a part thereof may be carried out using an antibody binding specifically to said tumor-associated antigen or said part thereof.

[0042] In further embodiments, the tumor-associated antigen to be detected or the part thereof is present in a complex with an MHC molecule, in particular an HLA molecule.

[0043] According to the present technology, detection of an antibody or monitoring the amount of antibodies may be carried out using a protein or peptide binding specifically to said antibody.

[0044] According to the present technology, detection of cytolytic T cells or of T helper cells or monitoring the amount of cytolytic T cells or of T helper cells which are specific for complexes between an antigen or a part thereof and MHC molecules may be carried out using a cell presenting the complex between said antigen or said part thereof and an MHC molecule.

[0045] The polynucleotide probe, the antibody, the protein or peptide or the cell, which is used for detection or monitoring, is preferably labeled in a detectable manner. In particular embodiments, the detectable marker is a radioactive marker or an enzymic marker. T lymphocytes may additionally be detected by detecting their proliferation, their cytokine production, and their cytotoxic activity triggered by specific stimulation with the complex of MHC and tumor-associated antigen or parts thereof. T lymphocytes may also be detected via a recombinant MHC molecule or else a complex of two or more MHC molecules which are loaded with the particular immunogenic fragment of one or more of the tumor-associated antigens and which can identify the specific T lymphocytes by contacting the specific T cell receptor.

[0046] In a further aspect, the present technology relates to a method of treating, diagnosing or monitoring a disease characterized by expression or abnormal expression of a tumor-associated antigen identified according to the present technology, which method comprises administering an antibody which binds to said tumor-associated antigen or to a part thereof and which is coupled to a therapeutic or diagnostic agent. The antibody may be a monoclonal antibody. In further embodiments, the antibody is a chimeric or humanized antibody or a fragment of a natural antibody.

[0047] The present technology also relates to a method of treating a patient having a disease characterized by expression or abnormal expression of a tumor-associated antigen identified according to the present technology, which method comprises (i) removing a sample containing immunoreactive cells from said patient, (ii) contacting said sample with a host cell expressing said tumor-associated antigen or a part thereof, under conditions which favor production of cytolytic T cells against said tumor-associated antigen or a part thereof, and (iii) introducing the cytolytic T cells into the patient in an amount suitable for lysing cells expressing the tumor-associated antigen or a part thereof. The present technology likewise relates to cloning the T cell receptor of cytolytic T cells against the tumor-associated antigen. Said receptor may be transferred to other T cells which thus receive the desired specificity and, as under (iii), may be introduced into the patient.

[0048] In one embodiment, the host cell endogenously expresses an HLA molecule. In a further embodiment, the host cell recombinantly expresses an HLA molecule and/or the tumor-associated antigen or the part thereof. The host cell is preferably nonproliferative. In a preferred embodiment, the host cell is an antigen-presenting cell, in particular a dendritic cell, a monocyte or a macrophage.

[0049] In a further aspect, the present technology relates to a method of treating a patient having a disease characterized by expression or abnormal expression of a tumor-associated antigen, which method comprises (i) identifying a nucleic acid which codes for a tumor-associated antigen identified according to the present technology and which is expressed by cells associated with said disease, (ii) transfecting a host cell with said nucleic acid or a part thereof, (iii) culturing the transfected host cell for expression of said nucleic acid (this is not obligatory when a high rate of transfection is obtained), and (iv) introducing the host cells or an extract thereof into the patient in an amount suitable for increasing the immune response to the patient's cells associated with the disease. The method may further comprise identifying an MHC molecule presenting the tumor-associated antigen or a part thereof, with the host cell expressing the identified MHC molecule and presenting said tumor-associated antigen or a part thereof. The immune response may comprise a B cell response or a T cell response. Furthermore, a T cell response may comprise production of cytolytic T cells and/or T helper cells which are specific for the host cells presenting the tumor-associated antigen or a part thereof or specific for cells of the patient which express said tumor-associated antigen or a part thereof.

[0050] The present technology also relates to a method of treating a disease characterized by expression or abnormal expression of a tumor-associated antigen identified according to the present technology, which method comprises (i) identifying cells from the patient which express abnormal amounts of the tumor-associated antigen, (ii) isolating a sample of said cells, (iii) culturing said cells, and (iv) introducing said cells into the patient in an amount suitable for triggering an immune response to the cells.

[0051] Preferably, the host cells used according to the present technology are nonproliferative or are rendered nonproliferative. A disease characterized by expression or abnormal expression of a tumor-associated antigen is in particular cancer.

[0052] The present technology furthermore relates to a nucleic acid selected from the group consisting of (a) a nucleic acid which comprises a nucleic acid sequence selected from the group consisting of SEQ ID NOs: 3-5, a part or derivative thereof, (b) a nucleic acid which hybridizes with the nucleic acid of (a) under stringent conditions, (c) a nucleic acid which is degenerate with respect to the nucleic acid of (a) or (b), and (d) a nucleic acid which is complementary to the nucleic acid of (a), (b) or (c). The present technology furthermore relates to a nucleic acid, which codes for a protein or polypeptide comprising an amino acid sequence selected from the group consisting of SEQ ID NOs: 10 and 12-14, a part or derivative thereof.

[0053] In a further aspect, the present technology relates to promoter sequences of nucleic acids of the present technology. These sequences may be functionally linked to another gene, preferably in an expression vector, and thus ensure selective expression of said gene in appropriate cells.

[0054] In a further aspect, the present technology relates to a recombinant nucleic acid molecule, in particular DNA or RNA molecule, which comprises a nucleic acid of the present technology.

[0055] The present technology also relates to host cells which contain a nucleic acid of the present technology or a recombinant nucleic acid molecule comprising a nucleic acid of the present technology.

[0056] The host cell may also comprise a nucleic acid coding for a HLA molecule. In one embodiment, the host cell endogenously expresses the HLA molecule. In a further embodiment, the host cell recombinantly expresses the HLA molecule and/or the nucleic acid of the present technology or a part thereof. Preferably, the host cell is nonproliferative. In a preferred embodiment, the host cell is an antigen-presenting cell, in particular a dendritic cell, a monocyte or a macrophage.

[0057] In a further embodiment, the present technology relates to oligonucleotides which hybridize with a nucleic acid identified according to the present technology and which may be used as genetic probes or as "antisense" molecules. Nucleic acid molecules in the form of oligonucleotide primers or competent samples, which hybridize with a nucleic acid identified according to the present technology or parts thereof, may be used for finding nucleic acids which are homologous to said nucleic acid identified according to the present technology. PCR amplification, Southern and Northern hybridization may be employed for finding homologous nucleic acids. Hybridization may be carried out under low stringency, more preferably under medium stringency and most preferably under high stringency conditions. The term "stringent conditions" according to the present technology refers to conditions which allow specific hybridization between polynucleotides.

[0058] In a further aspect, the present technology relates to a protein, polypeptide or peptide which is encoded by a nucleic acid selected from the group consisting of (a) a nucleic acid which comprises a nucleic acid sequence selected from the group consisting of SEQ ID NOs: 3-5, a part or derivative thereof, (b) a nucleic acid which hybridizes with the nucleic acid of (a) under stringent conditions, (c) a nucleic acid which is degenerate with respect to the nucleic acid of (a) or (b), and (d) a nucleic acid which is complementary to the nucleic acid of (a), (b) or (c). In a preferred embodiment, the present technology relates to a protein or polypeptide or peptide which comprises an amino acid sequence selected from the group consisting of SEQ ID NOs: 10 and 12-14, a part or derivative thereof.

[0059] In a further aspect, the present technology relates to an immunogenic fragment of a tumor-associated antigen identified according to the present technology. Said fragment preferably binds to a human HLA receptor or to a human antibody. A fragment of the present technology preferably comprises a sequence of at least 6, in particular at least 8, at least 10, at least 12, at least 15, at least 20, at least 30 or at least 50, amino acids.

[0060] In this aspect the present technology relates, in particular, to a peptide which has or comprises a sequence selected from the group consisting of SEQ ID NOs: 17-19, 90-97, 100-102, 105, 106, 111-116, 120, 123, 124, and 135-137, a part or derivative thereof.

[0061] In a further aspect, the present technology relates to an agent which binds to a tumor-associated antigen identified according to the present technology or to a part thereof. In a preferred embodiment, the agent is an antibody. In further embodiments, the antibody is a chimeric, a humanized antibody or an antibody produced by combinatory techniques or is a fragment of an antibody. Furthermore, the present technology relates to an antibody which binds selectively to a complex of (i) a tumor-associated antigen identified according to the present technology or a part thereof and (ii) an MHC molecule to which said tumor-associated antigen identified according to the present technology or said part thereof binds, with said antibody not binding to (i) or (ii) alone. An antibody of the present technology may be a monoclonal antibody. In further embodiments, the antibody is a chimeric or humanized antibody or a fragment of a natural antibody.

[0062] In particular, the present technology relates to such an agent, in particular an antibody, which specifically binds to a peptide which has or comprises a sequence selected from the group consisting of SEQ ID NOs: 17-19, 90-97, 100-102, 105, 106, 111-116, 120, 123, 124, and 135-137, a part or derivative thereof.

[0063] The present technology furthermore relates to a conjugate between an agent of the present technology which binds to a tumor-associated antigen identified according to the present technology or to a part thereof or an antibody of the present technology and a therapeutic or diagnostic agent. In one embodiment, the therapeutic or diagnostic agent is a toxin.

[0064] In a further aspect, the present technology relates to a kit for detecting expression or abnormal expression of a tumor-associated antigen identified according to the present technology, which kit comprises agents for detection (i) of the nucleic acid which codes for the tumor-associated antigen or of a part thereof, (ii) of the tumor-associated antigen or of a part thereof, (iii) of antibodies which bind to the tumor-associated antigen or to a part thereof, and/or (iv) of T cells which are specific for a complex between the tumor-associated antigen or a part thereof and an MHC molecule. In one embodiment, the agents for detection of the nucleic acid or the part thereof are nucleic acid molecules for selective amplification of said nucleic acid, which comprise, in particular a sequence of 6-50, in particular 10-30, 15-30 and 20-30, contiguous nucleotides of said nucleic acid.

DETAILED DESCRIPTION OF THE INVENTION

[0065] According to the present technology, genes are described which are expressed in tumor cells selectively or aberrantly and which are tumor-associated antigens.

[0066] According to the present technology, these genes and/or their genetic products and/or their derivatives and/or parts are preferred target structures for therapeutic approaches. Conceptionally, said therapeutic approaches may aim at inhibiting the activity of the selectively expressed tumor-associated genetic product. This is useful, if said aberrant respective selective expression is functionally important in tumor pathogenecity and if its ligation is accompanied by selective damage of the corresponding cells. Other therapeutic concepts contemplate tumor-associated antigens as labels which recruit effector mechanisms having cell-damaging potential selectively to tumor cells. Here, the function of the target molecule itself and its role in tumor development are totally irrelevant.

[0067] "Derivative" of a nucleic acid means according to the present technology that single or multiple nucleotide substitutions, deletions and/or additions are present in said nucleic acid. Furthermore, the term "derivative" also comprises chemical derivatization of a nucleic acid on a nucleotide base, on the sugar or on the phosphate. The term "derivative" also comprises nucleic acids which contain nucleotides and nucleotide analogs not occurring naturally.

[0068] According to the present technology, a nucleic acid is preferably deoxyribonucleic acid (DNA) or ribonucleic acid (RNA). Nucleic acids comprise according to the present technology genomic DNA, cDNA, mRNA, recombinantly produced and chemically synthesized molecules. According to the present technology, a nucleic acid may be present as a single-stranded or double-stranded and linear or covalently circularly closed molecule.

[0069] The nucleic acids described according to the present technology have preferably been isolated. The term "isolated nucleic acid" means according to the present technology that the nucleic acid was (i) amplified in vitro, for example by polymerase chain reaction (PCR), (ii) recombinantly produced by cloning, (iii) purified, for example by cleavage and gel-electrophoretic fractionation, or (iv) synthesized, for example by chemical synthesis. An isolated nucleic acid is a nucleic acid which is available for manipulation by recombinant DNA techniques.

[0070] A nucleic acid is "complementary" to another nucleic acid if the two sequences are capable of hybridizing and forming a stable duplex with one another, with hybridization preferably being carried out under conditions which allow specific hybridization between polynucleotides (stringent conditions). Stringent conditions are described, for example, in Molecular Cloning: A Laboratory Manual, J. Sambrook et al., Editors, 2nd Edition, Cold Spring Harbor Laboratory press, Cold Spring Harbor, N.Y., 1989 or Current Protocols in Molecular Biology, F. M. Ausubel et al., Editors, John Wiley & Sons, Inc., New York and refer, for example, to hybridization at 65° C. in hybridization buffer (3.5×SSC, 0.02% Ficoll, 0.02% polyvinylpyrrolidone, 0.02% bovine serum albumin, 2.5 mM NaH₂PO₄ (pH 7), 0.5% SOS, 2 mM EDTA). SSC is 0.15 M sodium chloride/0.15 M sodium citrate, pH 7. After hybridization, the membrane to which the DNA has been transferred is washed, for example, in 2×SSC at room temperature and then in 0.1-0.5×SSC/0.1×SDS at temperatures of up to 68° C.

[0071] According to the present technology, complementary nucleic acids have at least 40%, in particular at least 50%, at least 60%, at least 70%, at least 80%, at least 90% and preferably at least 95%, at least 98% or at least 99%, identical nucleotides.

[0072] Nucleic acids coding for tumor-associated antigens may, according to the present technology, be present alone or in combination with other nucleic acids, in particular heterologous nucleic acids. In preferred embodiments, a nucleic acid is functionally linked to expression control sequences or regulatory sequences which may be homologous or heterologous with respect to said nucleic acid. A coding sequence and a regulatory sequence are "functionally" linked to one another, if they are covalently linked to one another in such a way that expression or transcription of said coding sequence is under the control or under the influence of said regulatory sequence. If the coding sequence is to be translated into a functional protein, then, with a regulatory sequence functionally linked to said coding sequence, induction of said regulatory sequence results in transcription of said coding sequence, without causing a frame shift in the coding sequence or said coding sequence not being capable of being translated into the desired protein or peptide.

[0073] The term "expression control sequence" or "regulatory sequence" comprises according to the present technology promoters, enhancers and other control elements which regulate expression of a gene. In particular embodiments of the present technology, the expression control sequences can be regulated. The exact structure of regulatory sequences may vary as a function of the species or cell type, but generally comprises 5' untranscribed and 5' untranslated sequences which are involved in initiation of transcription and translation, respectively, such as TATA box, capping sequence, CAAT sequence, and the like. More specifically, 5' untranscribed regulatory sequences comprise a promoter region which includes a promoter sequence for transcriptional control of the functionally linked gene. Regulatory sequences may also comprise enhancer sequences or upstream activator sequences.

[0074] Thus, on the one hand, the tumor-associated antigens illustrated herein may be combined with any expression control sequences and promoters. On the other hand, however, the promoters of the tumor-associated genetic products illustrated herein may, according to the present technology, be combined with any other genes. This allows the selective activity of these promoters to be utilized.

[0075] According to the present technology, a nucleic acid may furthermore be present in combination with another nucleic acid which codes for a polypeptide controlling secretion of the protein or polypeptide encoded by said nucleic acid from a host cell. According to the present technology, a nucleic acid may also be present in combination with another nucleic acid which codes for a polypeptide causing the encoded protein or polypeptide to be anchored on the cell membrane of the host cell or compartmentalized into particular organelles of said cell. Similarly, a combination with a nucleic acid is possible which represents a reporter gene or any "tag".

[0076] In a preferred embodiment, a recombinant DNA molecule is according to the present technology a vector, where appropriate with a promoter, which controls expression of a nucleic acid, for example a nucleic acid coding for a tumor-associated antigen of the present technology. The term "vector" is used here in its most general meaning and comprises any intermediary vehicle for a nucleic acid which enables said nucleic acid, for example, to be introduced into prokaryotic and/or eukaryotic cells and, where appropriate, to be integrated into a genome. Vectors of this kind are preferably replicated and/or expressed in the cells. An intermediary vehicle may be adapted, for example, to the use in electroporation, in bombardment with microprojectiles, in liposomal administration, in the transfer with the aid of agrobacteria or in insertion via DNA or RNA viruses. Vectors comprise plasmids, phagemids or viral genomes.

[0077] The nucleic acids coding for a tumor-associated antigen identified according to the present technology may be used for transfection of host cells. Nucleic acids here mean both recombinant DNA and RNA. Recombinant RNA may be prepared by in-vitro transcription of a DNA template. Furthermore, it may be modified by stabilizing sequences, capping and polyadenylation prior to application.

[0078] According to the present technology, the term "host cell" relates to any cell which can be transformed or transfected with an exogenous nucleic acid. The term "host cells" comprises according to the present technology prokaryotic (e.g. E. coli) or eukaryotic cells (e.g. dendritic cells, B cells, CHO cells, COS cells, K562 cells, yeast cells and insect cells). Particular preference is given to mammalian cells such as cells from humans, mice, hamsters, pigs, goats, primates. The cells may be derived from a multiplicity of tissue types and comprise primary cells and cell lines.

[0079] Specific examples comprise keratinocytes, peripheral blood leukocytes, stem cells of the bone marrow and embryonic stem cells. In further embodiments, the host cell is an antigen-presenting cell, in particular a dendritic cell, monocyte or a macrophage. A nucleic acid may be present in the host cell in the form of a single copy or of two or more copies and, in one embodiment, is expressed in the host cell.

[0080] According to the present technology, the term "expression" is used in its most general meaning and comprises the production of RNA or of RNA and protein. It also comprises partial expression of nucleic acids. Furthermore, expression may be carried out transiently or stably. Preferred expression systems in mammalian cells comprise pcDNA3.1 and pRc/CMV (Invitrogen, Carlsbad, Calif.), which contain a selectable marker such as a gene imparting resistance to G418 (and thus enabling stably transfected cell lines to be selected) and the enhancer-promoter sequences of cytomegalovirus (CMV).

[0081] In those cases of the present technology in which an HLA molecule presents a tumor-associated antigen or a part thereof, an expression vector may also comprise a nucleic acid sequence coding for said HLA molecule. The nucleic acid sequence coding for the HLA molecule may be present on the same expression vector as the nucleic acid coding for the tumor-associated antigen or the part thereof, or both nucleic acids may be present on different expression vectors. In the latter case, the two expression vectors may be cotransfected into a cell. If a host cell expresses neither the tumor-associated antigen or the part thereof nor the HLA molecule, both nucleic acids coding therefor are transfected into the cell either on the same expression vector or on different expression vectors. If the cell already expresses the HLA molecule, only the nucleic acid sequence coding for the tumor-associated antigen or the part thereof can be transfected into the cell.

[0082] The present technology also comprises kits for amplification of a nucleic acid coding for a tumor-associated antigen. Such kits comprise, for example, a pair of amplification primers which hybridize to the nucleic acid coding for the tumor-associated antigen. The primers preferably comprise a sequence of 6-50, in particular 10-30, 15-30 and 20-30 contiguous nucleotides of the nucleic acid and are nonoverlapping, in order to avoid the formation of primer dimers. One of the primers will hybridize to one strand of the nucleic acid coding for the tumor-associated antigen, and the other primer will hybridize to the complementary strand in an arrangement which allows amplification of the nucleic acid coding for the tumor-associated antigen.

[0083] "Antisense" molecules or "antisense" nucleic acids may be used for regulating, in particular reducing, expression of a nucleic acid. The term "antisense molecule" or "antisense nucleic acid" refers according to the present technology to an oligonucleotide which is an oligoribonucleotide, oligodeoxyribonucleotide, modified oligoribonucleotide or modified oligo-deoxyribonucleotide and which hybridizes under physiological conditions to DNA comprising a particular gene or to mRNA of said gene, thereby inhibiting transcription of said gene and/or translation of said mRNA. According to the present technology, an "antisense molecule" also comprises a construct which contains a nucleic acid or a part thereof in reverse orientation with respect to its natural promoter. An antisense transcript of a nucleic acid or of a part thereof may form a duplex with the naturally occurring mRNA specifying the enzyme and thus prevent accumulation of or translation of the mRNA into the active enzyme.

[0084] Another possibility is the use of ribozymes for inactivating a nucleic acid. Antisense oligonucleotides preferred according to the present technology have a sequence of 6-50, in particular 10-30, 15-30 and 20-30, contiguous nucleotides of the target nucleic acid and preferably are fully complementary to the target nucleic acid or to a part thereof.

[0085] In preferred embodiments, the antisense oligonucleotide hybridizes with an N-terminal or 5' upstream site such as a translation initiation site, transcription initiation site or promoter site. In further embodiments, the antisense oligonucleotide hybridizes with a 3' untranslated region or mRNA splicing site.

[0086] In one embodiment, an oligonucleotide of the present technology consists of ribonucleotides, deoxyribonucleotides or a combination thereof, with the 5' end of one nucleotide and the 3' end of another nucleotide being linked to one another by a phosphodiester bond. These oligonucleotides may be synthesized in the conventional manner or produced recombinantly.

[0087] In preferred embodiments, an oligonucleotide of the present technology is a "modified" oligonucleotide. Here, the oligonucleotide may be modified in very different ways, without impairing its ability to bind its target, in order to increase, for example, its stability or therapeutic efficacy. According to the present technology, the term "modified oligonucleotide" means an oligonucleotide in which (i) at least two of its nucleotides are linked to one another by a synthetic internucleoside bond (i.e. an internucleoside bond which is not a phosphodiester bond) and/or (ii) a chemical group which is usually not found in nucleic acids is covalently linked to the oligonucleotide. Preferred synthetic internucleoside bonds are phosphorothioates, alkyl phosphonates, phosphorodithioates, phosphate esters, alkyl phosphonothioates, phosphoramidates, carbamates, carbonates, phosphate triesters, acetamidates, carboxymethyl esters and peptides.

[0088] The term "modified oligonucleotide" also comprises oligonucleotides having a covalently modified base and/or sugar. "Modified oligonucleotides" comprise, for example, oligonucleotides with sugar residues which are covalently bound to low molecular weight organic groups other than a hydroxyl group at the 3' position and a phosphate group at the 5' position. Modified oligonucleotides may comprise, for example, a 2'-O-alkylated ribose residue or another sugar instead of ribose, such as arabinose.

[0089] Preferably, the proteins and polypeptides described according to the present technology have been isolated. The terms "isolated protein" or "isolated polypeptide" mean that the protein or polypeptide has been separated from its natural environment. An isolated protein or polypeptide may be in an essentially purified state. The term "essentially purified" means that the protein or polypeptide is essentially free of other substances with which it is associated in nature or in vivo.

[0090] Such proteins and polypeptides may be used, for example, in producing antibodies and in an immunological or diagnostic assay or as therapeutics. Proteins and polypeptides described according to the present technology may be isolated from biological samples such as tissue or cell homogenates and may also be expressed recombinantly in a multiplicity of pro- or eukaryotic expression systems.

[0091] For the purposes of the present technology, "derivatives" of a protein or polypeptide or of an amino acid sequence comprise amino acid insertion variants, amino acid deletion variants and/or amino acid substitution variants.

[0092] Amino acid insertion variants comprise amino- and/or carboxy-terminal fusions and also insertions of single or two or more amino acids in a particular amino acid sequence. In the case of amino acid sequence variants having an insertion, one or more amino acid residues are inserted into a particular site in an amino acid sequence, although random insertion with appropriate screening of the resulting product is also possible. Amino acid deletion variants are characterized by the removal of one or more amino acids from the sequence. Amino acid substitution variants are characterized by at least one residue in the sequence being removed and another residue being inserted in its place. Preference is given to the modifications being in positions in the amino acid sequence which are not conserved between homologous proteins or polypeptides. Preference is given to replacing amino acids with other ones having similar properties such as hydrophobicity, hydrophilicity, electronegativity, volume of the side chain and the like (conservative substitution). Conservative substitutions, for example, relate to the exchange of one amino acid with another amino acid listed below in the same group as the amino acid to be substituted:

[0093] 1. small aliphatic, nonpolar or slightly polar residues: Ala, Ser, Thr (Pro, Gly)

[0094] 2. negatively charged residues and their amides: Asn, Asp, Glu, Gln

[0095] 3. positively charged residues: His, Arg, Lys

[0096] 4. large aliphatic, nonpolar residues: Met, Leu, Ile, Val (Cys)

[0097] 5. large aromatic residues: Phe, Tyr, Trp.

[0098] Owing to their particular part in protein architecture, three residues are shown in brackets. Gly is the only residue without a side chain and thus imparts flexibility to the chain. Pro has an unusual geometry which greatly restricts the chain. Cys can form a disulfide bridge.

[0099] The amino acid variants described above may be readily prepared with the aid of known peptide synthesis techniques such as, for example, by solid phase synthesis (Merrifield, 1964) and similar methods or by recombinant DNA manipulation. Techniques for introducing substitution mutations at predetermined sites into DNA which has a known or partially known sequence are well known and comprise M13 mutagenesis, for example. The manipulation of DNA sequences for preparing proteins having substitutions, insertions or deletions, is described in detail in Sambrook et al. (1989), for example.

[0100] According to the present technology, "derivatives" of proteins, polypeptides or peptides also comprise single or multiple substitutions, deletions and/or additions of any molecules associated with the enzyme, such as carbohydrates, lipids and/or proteins, polypeptides or peptides. The term "derivative" also extends to all functional chemical equivalents of said proteins, polypeptides or peptides.

[0101] According to the present technology, a part or fragment of a tumor-associated antigen has a functional property of the polypeptide from which it has been derived. Such functional properties comprise the interaction with antibodies, the interaction with other polypeptides or proteins, the selective binding of nucleic acids and an enzymatic activity. A particular property is the ability to form a complex with HLA and, where appropriate, generate an immune response. This immune response may be based on stimulating cytotoxic or T helper cells. A part or fragment of a tumor-associated antigen of the present technology preferably comprises a sequence of at least 6, in particular at least 8, at least 10, at least 12, at least 15, at least 20, at least 30 or at least 50, consecutive amino acids of the tumor-associated antigen.

[0102] A part or a fragment of a nucleic acid coding for a tumor-associated antigen relates according to the present technology to the part of the nucleic acid, which codes at least for the tumor-associated antigen and/or for a part or a fragment of said tumor-associated antigen, as defined above.

[0103] The isolation and identification of genes coding for tumor-associated antigens also make possible the diagnosis of a disease characterized by expression of one or more tumor-associated antigens. These methods comprise determining one or more nucleic acids which code for a tumor-associated antigen and/or determining the encoded tumor-associated antigens and/or peptides derived therefrom. The nucleic acids may be determined in the conventional manner, including by polymerase chain reaction or hybridization with a labeled probe. Tumor-associated antigens or peptides derived therefrom may be determined by screening patient antisera with respect to recognizing the antigen and/or the peptides. They may also be determined by screening T cells of the patient for specificities for the corresponding tumor-associated antigen.

[0104] The present technology also enables proteins binding to tumor-associated antigens described herein to be isolated, including antibodies and cellular binding partners of said tumor-associated antigens.

[0105] According to the present technology, particular embodiments ought to involve providing "dominant negative" polypeptides derived from tumor-associated antigens. A dominant negative polypeptide is an inactive protein variant which, by way of interacting with the cellular machinery, displaces an active protein from its interaction with the cellular machinery or which competes with the active protein, thereby reducing the effect of said active protein. For example, a dominant negative receptor which binds to a ligand but does not generate any signal as response to binding to the ligand can reduce the biological effect of said ligand. Similarly, a dominant negative catalytically inactive kinase which usually interacts with target proteins but does not phosphorylate said target proteins may reduce phosphorylation of said target proteins as response to a cellular signal. Similarly, a dominant negative transcription factor which binds to a promoter site in the control region of a gene but does not increase transcription of said gene may reduce the effect of a normal transcription factor by occupying promoter binding sites, without increasing transcription.

[0106] The result of expression of a dominant negative polypeptide in a cell is a reduction in the function of active proteins. The skilled worker may prepare dominant negative variants of a protein, for example, by conventional mutagenesis methods and by evaluating the dominant negative effect of the variant polypeptide.

[0107] The present technology also comprises substances such as polypeptides which bind to tumor-associated antigens. Such binding substances may be used, for example, in screening assays for detecting tumor-associated antigens and complexes of tumor-associated antigens with their binding partners and in the purification of said tumor-associated antigens and of complexes thereof with their binding partners. Such substances may also be used for inhibiting the activity of tumor-associated dominant antigens, for example by binding to such antigens.

[0108] The present technology therefore comprises binding substances such as, for example, antibodies or antibody fragments, which are capable of selectively binding to tumor-associated antigens. Antibodies comprise polyclonal and monoclonal antibodies which are produced in the conventional manner.

[0109] Such antibodies can recognize proteins in the native and/or denaturated state (Anderson et al., J. Immunol. 143: 1899-1904, 1989; Gardsvoll, J. Immunol. Methods 234: 107-116, 2000; Kayyem et al., Eur. J. Biochem. 208: 1-8, 1992; Spiller et al., J. Immunol. Methods 224: 51-60, 1999).

[0110] Antisera which contain specific antibodies specifically binding to the target protein can be prepared by various standard processes; see, for example, "Monoclonal Antibodies: A Practical Approach" by Philip Shepherd, Christopher Dean ISBN 0-19-963722-9; "Antibodies: A Laboratory Manual" by Ed Harlow, David Lane, ISBN: 0879693142 and "Using Antibodies: A Laboratory Manual: Portable Protocol NO" by Edward Harlow, David Lane, Ed Harlow ISBN 0879695447. Thereby it is also possible to generate affine and specific antibodies which recognize complex membrane proteins in their native form (Azorsa et al., J. Immunol. Methods 229: 35-48, 1999; Anderson et al., J. Immunol. 143: 30 1899-1904, 1989; Gardsvoll, J. Immunol. Methods 234: 107-116, 2000). This is in particular relevant for the preparation of antibodies which are to be used therapeutically, but also for many diagnostic applications. In this respect, it is possible to immunize with the whole protein, with extracellular partial sequences as well as with cells which express the target molecule in physiologically folded form.

[0111] Monoclonal antibodies are traditionally prepared using the hybridoma technology. (for technical details see: "Monoclonal Antibodies: A Practical Approach" by Philip Shepherd, Christopher Dean ISBN 0-19-963722-9; "Antibodies: A Laboratory Manual" by Ed Harlow, David Lane ISBN: 0879693142; "Using Antibodies: A Laboratory Manual: Portable Protocol NO" by Edward Harlow, David Lane, Ed Harlow ISBN: 0879695447).

[0112] It is known that only a small part of an antibody molecule, the paratope, is involved in binding of the antibody to its epitope (cf. Clark, W. R. (1986), The Experimental Foundations of Modern Immunology, Wiley & Sons, Inc., New York; Roitt, I. (1991), Essential Immunology, 7th Edition, Blackwell Scientific Publications, Oxford). The pFc' and Fc regions are, for example, effectors of the complement cascade but are not involved in antigen binding. An antibody from which the pFc' region has been enzymatically removed or which has been produced without the pFc' region, referred to as F(ab')₂ fragment, carries both antigen binding sites of a complete antibody. Similarly, an antibody from which the Fc region has been enzymatically removed or which has been produced without said Fc region, referred to as Fab fragment, carries one antigen binding site of an intact antibody molecule. Furthermore, Fab fragments consist of a covalently bound light chain of an antibody and part of the heavy chain of said antibody, referred to as Fd. The Fd fragments are the main determinants of antibody specificity (a single Fd fragment can be associated with up to ten different light chains, without altering the specificity of the antibody) and Fd fragments, when isolated, retain the ability to bind to an epitope.

[0113] Located within the antigen-binding part of an antibody are complementary-determining regions (CDRs) which interact directly with the antigen epitope and framework regions (FRs) which maintain the tertiary structure of the paratope. Both the Fd fragment of the heavy chain and the light chain of IgG immunoglobulins contain four framework regions (FR1 to FR4) which are separated in each case by three complementary-determining regions (CDR1 to CDR3). The CDRs and, in particular, the CDR3 regions and, still more particularly, the CDR3 region of the heavy chain are responsible to a large extent for antibody specificity.

[0114] Non-CDR regions of a mammalian antibody are known to be able to be replaced by similar regions of antibodies with the same or a different specificity, with the specificity for the epitope of the original antibody being retained. This made possible the development of "humanized" antibodies in which nonhuman CDRs are covalently linked to human FR and/or Fc/pFc' regions to produce a functional antibody.

[0115] This is utilized in the so called "SLAM" technology, wherein B cells from whole blood are isolated and the cells are monocloned. Then, the supernatant of the single B cells is analyzed with respect to its antibody specificity. In contrast to the hybridoma technology the variable region of the antibody gene is amplified using single cell PCR and cloned into a suitable vector. In this way, the provision of monoclonal antibodies is accelerated (de Wildt et al., J. Immunol. Methods 207: 61-67, 1997).

[0116] As another example, WO 92/04381 describes the production and use of humanized murine RSV antibodies in which at least part of the murine FR regions have been replaced with FR regions of a human origin. Antibodies of this kind, including fragments of intact antibodies with antigen-binding capability, are often referred to as "chimeric" antibodies.

[0117] The present technology also provides F(ab')₂, Fab, Fv, and Fd fragments of antibodies, chimeric antibodies, in which the Fc and/or FR and/or CDR1 and/or CDR2 and/or light chain-CDR3 regions have been replaced with homologous human or nonhuman sequences, chimeric F(ab')₂-fragment antibodies in which the FR and/or CDR1 and/or CDR2 and/or light chain-CDR3 regions have been replaced with homologous human or nonhuman sequences, chimeric Fab-fragment antibodies in which the FR and/or CDR1 and/or CDR2 and/or light chain-CDR3 regions have been replaced with homologous human or nonhuman sequences, and chimeric Fd-fragment antibodies in which the FR and/or CDR1 and/or CDR2 regions have been replaced with homologous human or nonhuman sequences. The present technology also comprises "single-chain" antibodies.

[0118] The present technology also comprises polypeptides which bind specifically to tumor-associated antigens. Polypeptide binding substances of this kind may be provided, for example, by degenerate peptide libraries which may be prepared simply in solution in an immobilized form or as phage-display libraries. It is likewise possible to prepare combinatorial libraries of peptides with one or more amino acids. Libraries of peptoids and nonpeptidic synthetic residues may also be prepared.

[0119] Phage display may be particularly effective in identifying binding peptides of the present technology. In this connection, for example, a phage library is prepared (using, for example, the M13, fd or lambda phages) which presents inserts of from 4 to about 80 amino acid residues in length. Phages are then selected which carry inserts which bind to the tumor-associated antigen. This process may be repeated via two or more cycles of a reselection of phages binding to the tumor-associated antigen. Repeated rounds result in a concentration of phages carrying particular sequences. An analysis of DNA sequences may be carried out in order to identify the sequences of the expressed polypeptides. The smallest linear portion of the sequence binding to the tumor-associated antigen may be determined. The "two-hybrid system" of yeast may also be used for identifying polypeptides which bind to a tumor-associated antigen. Tumor-associated antigens described according to the present technology or fragments thereof may be used for screening peptide libraries, including phage-display libraries, in order to identify and select peptide binding partners of the tumor-associated antigens. Such molecules may be used, for example, for screening assays, purification protocols, for interference with the function of the tumor-associated antigen and for other purposes known to the skilled worker.

[0120] The antibodies described above and other binding molecules may be used, for example, for identifying tissue which expresses a tumor-associated antigen. Antibodies may also be coupled to specific diagnostic substances for displaying cells and tissues expressing tumor-associated antigens. They may also be coupled to therapeutically useful substances. Diagnostic substances comprise, in a nonlimiting manner, barium sulfate, iocetamic acid, iopanoic acid, calcium ipodate, sodium diatrizoate, meglumine diatrizoate, metrizamide, sodium tyropanoate and radio diagnostic, including positron emitters such as fluorine-18 and carbon-11, gamma emitters such as iodine-123, technetium-99m, iodine-131 and indium-111, nuclides for nuclear magnetic resonance, such as fluorine and gadolinium. According to the present technology, the term "therapeutically useful substance" means any therapeutic molecule which, as desired, is selectively guided to a cell which expresses one or more tumor-associated antigens, including anticancer agents, radioactive iodine-labeled compounds, toxins, cytostatic or cytolytic drugs, etc. Anticancer agents comprise, for example, aminoglutethimide, azathioprine, bleomycin sulfate, busulfan, carmustine, chlorambucil, cisplatin, cyclophosphamide, cyclosporine, cytarabidine, dacarbazine, dactinomycin, daunorubin, doxorubicin, taxol, etoposide, fluorouracil, interferon-α, lomustine, mercaptopurine, methotrexate, mitotane, procarbazine HCl, thioguanine, vinblastine sulfate and vincristine sulfate. Other anticancer agents are described, for example, in Goodman and Gilman, "The Pharmacological Basis of Therapeutics", 8th Edition, 1990, McGraw-Hill, Inc., in particular Chapter 52 (Antineoplastic Agents (Paul Calabresi and Bruce A. Chabner). Toxins may be proteins such as pokeweed antiviral protein, cholera toxin, pertussis toxin, ricin, gelonin, abrin, diphtheria exotoxin or Pseudornonas exotoxin. Toxin residues may also be high energy-emitting radionuclides such as cobalt-60.

[0121] The term "patient" means according to the present technology a human being, a nonhuman primate or another animal, in particular a mammal such as a cow, horse, pig, sheep, goat, dog, cat or a rodent such as a mouse and rat. In a particularly preferred embodiment, the patient is a human being.

[0122] According to the present technology, the term "disease" refers to any pathological state in which tumor-associated antigens are expressed or abnormally expressed. "Abnormal expression" means according to the present technology that expression is altered, preferably increased, compared to the state in a healthy individual. An increase in expression refers to an increase by at least 10%, in particular at least 20%, at least 50% or at least 100%. In one embodiment, the tumor-associated antigen is expressed only in tissue of a diseased individual, while expression in a healthy individual is repressed. One example of such a disease is cancer, wherein the term "cancer" according to the present technology comprises leukemias, seminomas, melanomas, teratomas, gliomas, kidney cancer, adrenal cancer, thyroid cancer, intestinal cancer, liver cancer, colon cancer, stomach cancer, gastrointestinal cancer, lymph node cancer, esophagus cancer, colorectal cancer, pancreas cancer, ear, nose and throat (ENT) cancer, breast cancer, prostate cancer, cancer of the uterus, ovarian cancer and lung cancer and the matastases thereof.

[0123] According to the present technology, a biological sample may be a tissue sample and/or a cellular sample and may be obtained in the conventional manner such as by tissue biopsy, including punch biopsy, and by taking blood, bronchial aspirate, sputum, urine, feces or other body fluids, for use in the various methods described herein.

[0124] According to the present technology, the term "immunoreactive cell" means a cell which can mature into an immune cell (such as B cell, T helper cell, or cytolytic T cell) with suitable stimulation. Immunoreactive cells comprise CD34⁺ hematopoietic stem cells, immature and mature T cells and immature and mature B cells. If production of cytolytic or T helper cells recognizing a tumor-associated antigen is desired, the immunoreactive cell is contacted with a cell expressing a tumor-associated antigen under conditions which favor production, differentiation and/or selection of cytolytic T cells and of T helper cells. The differentiation of T cell precursors into a cytolytic T cell, when exposed to an antigen, is similar to clonal selection of the immune system.

[0125] Some therapeutic methods are based on a reaction of the immune system of a patient, which results in a lysis of antigen-presenting cells such as cancer cells which present one or more tumor-associated antigens. In this connection, for example autologous cytotoxic T lymphocytes specific for a complex of a tumor-associated antigen and an MHC molecule are administered to a patient having a cellular abnormality. The production of such cytotoxic T lymphocytes in vitro is known. An example of a method of differentiating T cells can be found in WO-A-9633265. Generally, a sample containing cells such as blood cells is taken from the patient and the cells are contacted with a cell which presents the complex and which can cause propagation of cytotoxic T lymphocytes (e.g. dendritic cells). The target cell may be a transfected cell such as a COS cell. These transfected cells present the desired complex on their surface and, when contacted with cytotoxic T lymphocytes, stimulate propagation of the latter. The clonally expanded autologous cytotoxic T lymphocytes are then administered to the patient.

[0126] In another method of selecting antigen-specific cytotoxic T lymphocytes, fluorogenic tetramers of MHC class I molecule/peptide complexes are used for detecting specific clones of cytotoxic T lymphocytes (Altman et al., Science 274:94-96, 1996; Dunbar et al., Curr. Biol. 8:413-416, 1998). Soluble MHC class I molecules are folded in vitro in the presence of β₂ microglobulin and a peptide antigen binding to said class I molecule. The MHC/peptide complexes are purified and then labeled with biotin. Tetramers are formed by mixing the biotinylated peptide-MHC complexes with labeled avidin (e.g. phycoerythrin) in a molar ratio of 4:1. Tetramers are then contacted with cytotoxic T lymphocytes such as peripheral blood or lymph nodes. The tetramers bind to cytotoxic T lymphocytes which recognize the peptide antigen/MHC class I complex. Cells which are bound to the tetramers may be sorted by fluorescence-controlled cell sorting to isolate reactive cytotoxic T lymphocytes. The isolated cytotoxic T lymphocytes may then be propagated in vitro.

[0127] In a therapeutic method referred to as adoptive transfer (Greenberg, J. Immunol. 136(5):1917, 1986; Riddel et al., Science 257:238, 1992; Lynch et al., Eur. J. Immunol. 21:1403-1410, 1991; Kast et al., Cell 59:603-614, 1989), cells presenting the desired complex (e.g. dendritic cells) are combined with cytotoxic T lymphocytes of the patient to be treated, resulting in a propagation of specific cytotoxic T lymphocytes. The propagated cytotoxic T lymphocytes are then administered to a patient having a cellular anomaly characterized by particular abnormal cells presenting the specific complex. The cytotoxic T lymphocytes then lyse the abnormal cells, thereby achieving a desired therapeutic effect.

[0128] Often, of the T cell repertoire of a patient, only T cells with low affinity for a specific complex of this kind can be propagated, since those with high affinity have been extinguished due to development of tolerance. An alternative here may be a transfer of the T cell receptor itself. For this too, cells presenting the desired complex (e.g. dendritic cells) are combined with cytotoxic T lymphocytes of healthy individuals or another species (e.g. mouse). This results in propagation of specific cytotoxic T lymphocytes with high affinity if the T lymphocytes are derived from a donor organism which had no previous contact with the specific complex. The high affinity T cell receptor of these propagated specific T lymphocytes is cloned. If the high affinity T cell receptors have been cloned from another species they can be humanized to a different extent. Such T cell receptors are then transduced via gene transfer, for example using retroviral vectors, into T cells of patients, as desired. Adoptive transfer is then carried out using these genetically altered T lymphocytes (Stanislawski et al., Nat Immunol. 2:962-70, 2001; Kessels et al., Nat Immunol. 2:957-61, 2001).

[0129] The therapeutic aspects above start out from the fact that at least some of the abnormal cells of the patient present a complex of a tumor-associated antigen and an HLA molecule. Such cells may be identified in a manner known per se. As soon as cells presenting the complex have been identified, they may be combined with a sample from the patient, which contains cytotoxic T lymphocytes. If the cytotoxic T lymphocytes lyse the cells presenting the complex, it can be assumed that a tumor-associated antigen is presented.

[0130] Adoptive transfer is not the only form of therapy which can be applied according to the present technology. Cytotoxic T lymphocytes may also be generated in vivo in a manner known per se. One method uses nonproliferative cells expressing the complex. The cells used here will be those which usually express the complex, such as irradiated tumor cells or cells transfected with one or both genes necessary for presentation of the complex (i.e. the antigenic peptide and the presenting HLA molecule). Various cell types may be used. Furthermore, it is possible to use vectors which carry one or both of the genes of interest. Particular preference is given to viral or bacterial vectors. For example, nucleic acids coding for a tumor-associated antigen or for a part thereof may be functionally linked to promoter and enhancer sequences which control expression of said tumor-associated antigen or a fragment thereof in particular tissues or cell types. The nucleic acid may be incorporated into an expression vector. Expression vectors may be nonmodified extrachromosomal nucleic acids, plasmids or viral genomes into which exogenous nucleic acids may be inserted. Nucleic acids coding for a tumor-associated antigen may also be inserted into a retroviral genome, thereby enabling the nucleic acid to be integrated into the genome of the target tissue or target cell. In these systems, a microorganism such as vaccinia virus, pox virus, Herpes simplex virus, retrovirus or adenovirus carries the gene of interest and de facto "infects" host cells. Another preferred form is the introduction of the tumor-associated antigen in the form of recombinant RNA which may be introduced into cells by liposomal transfer or by electroporation, for example. The resulting cells present the complex of interest and are recognized by autologous cytotoxic T lymphocytes which then propagate.

[0131] A similar effect can be achieved by combining the tumor-associated antigen or a fragment thereof with an adjuvant in order to make incorporation into antigen-presenting cells in vivo possible. The tumor-associated antigen or a fragment thereof may be represented as protein, as DNA (e.g. within a vector) or as RNA. The tumor-associated antigen is processed to produce a peptide partner for the HLA molecule, while a fragment thereof may be presented without the need for further processing. The latter is the case in particular, if these can bind to HLA molecules. Preference is given to administration forms in which the complete antigen is processed in vivo by a dendritic cell, since this may also produce T helper cell responses which are needed for an effective immune response (Ossendorp et al., Immunol Lett. 74:75-9, 2000; Ossendorp et al., J. Exp. Med. 187:693-702, 1998). In general, it is possible to administer an effective amount of the tumor-associated antigen to a patient by intradermal injection, for example. However, injection may also be carried out intranodally into a lymph node (Maloy et al., Proc Natl Acad Sci USA 98:3299-303, 2001). It may also be carried out in combination with reagents which facilitate uptake into dendritic cells. Preferred tumor-associated antigens comprise those which react with allogenic cancer antisera or with T cells of many cancer patients. Of particular interest, however, are those against which no spontaneous immune responses pre-exist. Evidently, it is possible to induce against these immune responses which can lyse tumors (Keogh et al., J. Immunol. 167:787-96, -2001; Appella et al., Biomed Pept Proteins Nucleic Acids 1:177-84, 1995; Wentworth et al., Mol Immunol. 32:603-12, 1995).

[0132] The pharmaceutical compositions described according to the present technology may also be used as vaccines for immunization. According to the present technology, the terms "immunization" or "vaccination" mean an increase in or activation of an immune response to an antigen. It is possible to use animal models for testing an immunizing effect on cancer by using a tumor-associated antigen or a nucleic acid coding therefor. For example, human cancer cells may be introduced into a mouse to generate a tumor, and one or more nucleic acids coding for tumor-associated antigens may be administered. The effect on the cancer cells (for example reduction in tumor size) may be measured as a measure for the effectiveness of an immunization by the nucleic acid.

[0133] As part of the composition for an immunization, one or more tumor-associated antigens or stimulating fragments thereof are administered together with one or more adjuvants for inducing an immune response or for increasing an immune response. An adjuvant is a substance which is incorporated into the antigen or administered together with the latter and which enhances the immune response. Adjuvants may enhance the immune response by providing an antigen reservoir (extracellularly or in macrophages), activating macrophages and/or stimulating particular lymphocytes. Adjuvants are known and comprise in a nonlimiting way monophosphoryl lipid A (MPL, SmithKline Beecham), saponins such as QS21 (SmithKline Beecham), DQS21 SmithKline Beecham; WO 96/33739), QS7, QS17, QS18 and QS-L1 (So et al., Mol. Cells 7:178-186, 1997), incomplete Freund's adjuvant, complete Freund's adjuvant, vitamin E, montanide, alum, CpG oligonucleotides (cf. Kreig et al., Nature 374:546-9, 1995) and various water-in-oil emulsions prepared from biologically degradable oils such as squalene and/or tocopherol. Preferably, the peptides are administered in a mixture with DQS21/MPL. The ratio of DQS21 to MPL is typically about 1:10 to 10:1, preferably about 1:5 to 5:1 and in particular about 1:1. For administration to humans, a vaccine formulation typically contains DQS21 and MPL in a range from about 1 μg to about 100 μg.

[0134] Other substances which stimulate an immune response of the patient may also be administered. It is possible, for example, to use cytokines in a vaccination, owing to their regulatory properties on lymphocytes. Such cytokines comprise, for example, interleukin-12 (IL-12) which was shown to increase the protective actions of vaccines (cf. Science 268:1432-1434, 1995), GM-CSF and IL-18.

[0135] There are a number of compounds which enhance an immune response and which therefore may be used in a vaccination. Said compounds comprise costimulating molecules provided in the form of proteins or nucleic acids. Examples of such costimulating molecules are B7-1 and B7-2 (CD80 and CD86, respectively) which are expressed on dendritic cells (DC) and interact with the CD28 molecule expressed on the T cells. This interaction provides a costimulation (signal 2) for an antigen/MHC/TCR-stimulated (signal 1) T cell, thereby enhancing propagation of said T cell and the effector function. B7 also interacts with CTLA4 (CD152) on T cells, and studies involving CTLA4 and B7 ligands demonstrate that B7-CTLA4 interaction can enhance antitumor immunity and CTL propagation (Zheng, P. et al., Proc. Natl. Acad. Sci. USA 95(11):6284-6289 (1998)).

[0136] B7 is typically not expressed on tumor cells so that these are not effective antigen-presenting cells (APCs) for T cells. Induction of B7 expression would enable tumor cells to stimulate more effectively propagation of cytotoxic T lymphocytes and an effector function. Costimulation by a combination of B7/IL-6/IL-12 revealed induction of IFN-gamma and Th1-cytokine profile in a T cell population, resulting in further enhanced T cell activity (Gajewski et al., J. Immunol. 154:5637-5648 (1995)).

[0137] A complete activation of cytotoxic T lymphocytes and a complete effector function require an involvement of T helper cells via interaction between the CD40 ligand on said T helper cells and the CD40 molecule expressed by dendritic cells (Ridge et al., Nature 393:474 (1998), Bennett et al., Nature 393:478. (1998), Schonberger et al., Nature 393:480 (1998)). The mechanism of this costimulating signal probably relates to the increase in B7 production and associated IL-6/IL-12 production by said dendritic cells (antigen-presenting Cells). CD40-CD40L interaction thus complements the interaction of signal 1 (antigen/MHC-TCR) and signal 2 (B7-CD28).

[0138] The use of anti-CD40 antibodies for stimulating dendritic cells would be expected to directly enhance a response to tumor antigens which are usually outside the range of an inflammatory response or which are presented by nonprofessional antigen-presenting cells (tumor cells). In these situations, T helper and B7-costimulating signals are not provided. This mechanism could be used in connection with therapies based on antigen-pulsed dendritic cells.

[0139] The present technology also provides for administration of nucleic acids, polypeptides or peptides. Polypeptides and peptides may be administered in a manner known per se. In one embodiment, nucleic acids are administered by ex vivo methods, i.e. by removing cells from a patient, genetic modification of said cells in order to incorporate a tumor-associated antigen and reintroduction of the altered cells into the patient. This generally comprises introducing a functional copy of a gene into the cells of a patient in vitro and reintroducing the genetically altered cells into the patient. The functional copy of the gene is under the functional control of regulatory elements which allow the gene to be expressed in the genetically altered cells. Transfection and transduction methods are known to the skilled worker. The present technology also provides for administering nucleic acids in vivo by using vectors such as viruses and target-controlled liposomes.

[0140] In a preferred embodiment, a viral vector for administering a nucleic acid coding for a tumor-associated antigen is selected from the group consisting of adenoviruses, adeno-associated viruses, pox viruses, including vaccinia virus and attenuated pox viruses, Semliki Forest virus, retroviruses, Sindbis virus and Ty virus-like particles. Particular preference is given to adenoviruses and retroviruses. The retroviruses are typically replication-deficient (i.e. they are incapable of generating infectious particles).

[0141] Various methods may be used in order to introduce according to the present technology nucleic acids into cells in vitro or in vivo. Methods of this kind comprise transfection of nucleic acid CaPO₄ precipitates, transfection of nucleic acids associated with DEAE, transfection or infection with the above viruses carrying the nucleic acids of interest, liposome-mediated transfection, and the like. In particular embodiments, preference is given to directing the nucleic acid to particular cells. In such embodiments, a carrier used for administering a nucleic acid to a cell (e.g. a retrovirus or a liposome) may have a bound target control molecule. For example, a molecule such as an antibody specific for a surface membrane protein on the target cell or a ligand for a receptor on the target cell may be incorporated into or attached to the nucleic acid carrier. Preferred antibodies comprise antibodies which bind selectively a tumor-associated antigen. If administration of a nucleic acid via liposomes is desired, proteins binding to a surface membrane protein associated with endocytosis may be incorporated into the liposome formulation in order to make target control and/or uptake possible. Such proteins comprise capsid proteins or fragments thereof which are specific for a particular cell type, antibodies to proteins which are internalized, proteins addressing an intracellular site, and the like.

[0142] The therapeutic compositions of the present technology may be administered in pharmaceutically compatible preparations. Such preparations may usually contain pharmaceutically compatible concentrations of salts, buffer substances, preservatives, carriers, supplementing immunity-enhancing substances such as adjuvants, CpG and cytokines and, where appropriate, other therapeutically active compounds.

[0143] The therapeutically active compounds of the present technology may be administered via any conventional route, including by injection or infusion. The administration may be carried out, for example, orally, intravenously, intraperitonealy, intramuscularly, subcutaneously or transdermally. Preferably, antibodies are therapeutically administered by way of a lung aerosol. Antisense nucleic acids are preferably administered by slow intravenous administration.

[0144] The compositions of the present technology are administered in effective amounts. An "effective amount" refers to the amount which achieves a desired reaction or a desired effect alone or together with further doses. In the case of treatment of a particular disease or of a particular condition characterized by expression of one or more tumor-associated antigens, the desired reaction relates to inhibition of the course of the disease. This comprises slowing down the progress of the disease and, in particular, interrupting the progress of the disease. The desired reaction in a treatment of a disease or of a condition may also be delay of the onset or a prevention of the onset of said disease or said condition.

[0145] An effective amount of a composition of the present technology will depend on the condition to be treated, the severeness of the disease, the individual parameters of the patient, including age, physiological condition, size and weight, the duration of treatment, the type of an accompanying therapy (if present), the specific route of administration and similar factors.

[0146] The pharmaceutical compositions of the present technology are preferably sterile and contain an effective amount of the therapeutically active substance to generate the desired reaction or the desired effect.

[0147] The doses administered of the compositions of the present technology may depend on various parameters such as the type of administration, the condition of the patient, the desired period of administration, etc. In the case that a reaction in a patient is insufficient with an initial dose, higher doses (or effectively higher doses achieved by a different, more localized route of administration) may be used.

[0148] Generally, doses of the tumor-associated antigen of from 1 ng to 1 mg, preferably from 10 ng to 100 μg are formulated and administered for a treatment or for generating or increasing an immune response. If the administration of nucleic acids (DNA and RNA) coding for tumor-associated antigens is desired, doses of from 1 ng to 0.1 mg are formulated and administered.

[0149] The pharmaceutical compositions of the present technology are generally administered in pharmaceutically compatible amounts and in pharmaceutically compatible compositions. The term "pharmaceutically compatible" refers to a nontoxic material which does not interact with the action of the active component of the pharmaceutical composition. Preparations of this kind may usually contain salts, buffer substances, preservatives, carriers and, where appropriate, other therapeutically active compounds. When used in medicine, the salts should be pharmaceutically compatible. However, salts which are not pharmaceutically compatible may used for preparing pharmaceutically compatible salts and are included in the present technology. Pharmacologically and pharmaceutically compatible salts of this kind comprise in a nonlimiting way those prepared from the following acids: hydrochloric, hydrobromic, sulfuric, nitric, phosphoric, maleic, acetic, salicylic, citric, formic, malonic, succinic acids, and the like. Pharmaceutically compatible salts may also be prepared as alkali metal salts or alkaline earth metal salts, such as sodium salts, potassium salts or calcium salts.

[0150] A pharmaceutical composition of the present technology may comprise a pharmaceutically compatible carrier. According to the present technology, the term "pharmaceutically compatible carrier" refers to one or more compatible solid or liquid fillers, diluents or encapsulating substances, which are suitable for administration to humans. The term "carrier" refers to an organic or inorganic component, of a natural or synthetic nature, in which the active component is combined in order to facilitate application. The components of the pharmaceutical composition of the present technology are usually such that no interaction occurs which substantially impairs the desired pharmaceutical efficacy.

[0151] The pharmaceutical compositions of the present technology may contain suitable buffer substances such as acetic acid in a salt, citric acid in a salt, boric acid in a salt and phosphoric acid in a salt.

[0152] The pharmaceutical compositions may, where appropriate, also contain suitable preservatives such as benzalkonium chloride, chlorobutanol, paraben and thimerosal.

[0153] The pharmaceutical compositions are usually provided in a uniform dosage form and may be prepared in a manner known per se. Pharmaceutical compositions of the present technology may be in the form of capsules, tablets, lozenges, suspensions, syrups, elixir or in the form of an emulsion, for example.

[0154] Compositions suitable for parenteral administration usually comprise a sterile aqueous or nonaqueous preparation of the active compound, which is preferably isotonic to the blood of the recipient. Examples of compatible carriers and solvents are Ringer solution and isotonic sodium chloride solution. In addition, usually sterile, fixed oils are used as solution or suspension medium.

[0155] The present technology is described in detail by the figures and examples below, which are used only for illustration purposes and are not meant to be limiting. Owing to the description and the examples, further embodiments which are likewise included in the present technology are accessible to the skilled worker.

BRIEF DESCRIPTION OF THE DRAWINGS

[0156] FIG. 1. GPR35 mRNA expression in colon carcinoma biopsies

[0157] RT-PCR investigations with DNA-free RNA show GER35 expression in most of the colon carcinoma biopsies. By contrast, there is no detectable expression in normal tissues. (1--Breast, 2--lung, 3--lymph nodes, 4--thymus, 5--colon, 6-15 colon carcinoma, 16--neg. control).

[0158] FIG. 2. Quantitative PCR analysis of GUCY2C mRNA expression in normal and tumor tissues

[0159] Real-time PCR investigation with GUCY2C-specific primers (SEQ ID NO: 22-23) shows selective mRNA expression in normal ileum, colon, and in all colon carcinoma biopsies. Distinct quantities of GUCY2C transcripts were also detected in a colon carcinoma metastasis in the liver.

[0160] FIG. 3. Identification of tumor-specific GUCY2C splice variants

[0161] PCR products from normal colon tissues and colon carcinomas were cloned, and clones from both groups were checked by restriction analysis (EcoR I) and sequenced.

[0162] FIG. 4. Selective SCGB3A expression in normal lung and lung carcinoma

[0163] RT-PCR analysis with gene-specific SCGB3A2 primers (SEQ ID NO: 37, 38) shows cDNA amplification exclusively in normal lung (lane 8, 14-15) and in lung carcinoma biopsies (lane 16-24). (1--Liver-N, 2--PBMC-N, 3--lymph node-N, 4--stomach-N, 5--testis-N, 6--breast-N, 7--kidney-N, 8--lung-N, 9--thymus-N, 10--ovary-N, 11--adrenal-N, 12--spleen-N, 14--15--lung-N, 16-24--lung carcinoma, 25--negative control).

[0164] FIG. 5. Claudin-18A2.1 expression in stomach, esophagus, stomach carcinoma and pancreatic carcinoma

[0165] RT-PCR analysis with claudin-18A2.1-specific primers (SEQ ID NO: 39, 40) showed according to the present technology pronounced claudin-18A2.1 expression in 8/10 stomach carcinoma biopsies and in 3/6 pancreatic carcinoma biopsies. Distinct expression was also detected in stomach and normal esophageal tissue. In contrast thereto, no expression was detected in the ovary and in ovarian carcinoma.

[0166] FIG. 6. SLC13A1 expression in the kidney and renal cell carcinoma

[0167] RT-PCR analysis with SLC13A1-specific primers (SEQ ID NO: 49, 50) showed expression in 7/8 renal cell carcinoma samples. Otherwise, transcripts within normal tissues were detected exclusively in the kidney. (1-2kidney, 3-10--renal cell carcinoma, 11--breast, 12--lung, 13--liver, 14--colon, 15--lymph nodes, 16--spleen, 17--esophagus, 18--thymus, 19--thyroid, 20--PBMCs, 21--ovary, 22--testis).

[0168] FIG. 7. CLCA1 expression in colon, colon carcinoma and stomach carcinoma

[0169] RT-PCR investigations with CLCA1-specific primers. (SEQ ID NO: 67, 68) confirmed selective expression in the colon and showed high expression in (3/7) investigated colon carcinoma and (1/3) investigated stomach carcinoma samples. The other normal tissues (NT) showed no or only very weak expression.

[0170] FIG. 8. FLJ21477 expression in the colon and colon carcinoma

[0171] RT-PCR investigations with FLJ21477-specific primers (SEQ ID NO: 69, 70) showed selective expression in the colon and additionally various levels of expression in (7/12) investigated colon carcinoma samples. The other normal tissues (NT) showed no expression.

[0172] FIG. 9. FLJ20694 expression in the colon and colon carcinoma

[0173] RT-PCR investigations with FLJ20694-specific primers (SEQ ID NO: 71, 72) showed selective expression in the colon and additionally various levels of expression in (5/9) investigated colon carcinoma samples. The other normal tissues (NT) showed no expression.

[0174] FIG. 10. von Ebner expression in stomach, lung and lung carcinoma

[0175] RT-PCR investigations with von Ebner-specific primers (SEQ ID NO: 73, 74) showed selective expression in the stomach, in the lung and in (5/10) investigated lung carcinoma samples. The other normal tissues (NT) showed no expression.

[0176] FIG. 11. Plunc expression in thymus, lung and lung carcinoma

[0177] RT-PCR investigations with Plunc-specific primers (SEQ ID NO: 75, 76) showed selective expression in the thymus, in the lung and in (6/10) investigated lung carcinoma samples. The other normal tissues showed no expression.

[0178] FIG. 12. SLC26A9 expression in lung, lung carcinoma and thyroid

[0179] RT-PCR investigations with SLC26A9-specific primers (SEQ ID NO: 77, 78) showed selective expression in the lung and in all (13/13) investigated lung carcinoma samples. The other normal tissues (NT) showed no expression with the exception of the thyroid.

[0180] FIG. 13. THC1005163 expression in stomach, ovary, lung and lung carcinoma

[0181] RT-PCR investigations with a THC1005163-specific primer (SEQ ID NO: 79) and a nonspecific oligo dT tag primer showed expression in stomach, ovary, lung and in (5/9) lung carcinoma biopsies. The other normal tissues (NT) showed no expression.

[0182] FIG. 14. LOC134288 expression in kidney and renal cell carcinoma

[0183] RT-PCR investigations with LOC134288-specific primers (SEQ ID NO: 80, 81) showed selective expression in the kidney and in (5/8) investigated renal cell carcinoma biopsies.

[0184] FIG. 15. THC943866 expression in kidney and renal cell carcinoma

[0185] RT-PCR investigations with THC943866-specific primers (SEQ ID NO: 82, 83) showed selective expression in the kidney and in (4/8) investigated renal cell carcinoma biopsies.

[0186] FIG. 16. FLJ21458 expression in colon and colon carcinoma

[0187] RT-PCR investigations with FLJ21458-specific primers (SEQ ID NO: 86, 87) showed selective expression in the colon and in (7/10) investigated colon carcinoma biopsies. (1-2--colon, 3.--liver, 4--PBMCs, 5--spleen, 6--prostate, 7--kidney, 8--ovary, 9--skin, 10--ileum, 11--lung, 12--testis, 13-22 colon carcinoma, 23--neg. control).

[0188] FIG. 17. Cellular localization of GPR35

[0189] Immunofluorescence for detecting the cellular localization of GPR35 after transfection of a plasmid that expresses a GPR35-GFP fusion protein. The arrows identify the membrane-associated fluorescence of the fluorescent GFP.

[0190] FIG. 18. Quantitative expression of GPR35

[0191] A. Quantitative RT-PCR with GPR35-specific primers (SEQ ID NO: 88, 89) show selective expression in the intestine, in colon tumor samples and in metastases from intestinal tumors. The following normal tissues were analyzed: liver, lung, lymph nodes, stomach, spleen, adrenal, kidney, esophagus, ovary, testis, thymus, skin, breast, pancreas, lymphocytes, activated lymphocytes, prostate, thyroid, fallopian tube, endometrium, cerebellum, brain.

[0192] B. Prevalence of GPR35 in colon tumors and metastases thereof. GPR35 is expressed both in the tumor and in metastases in more than 90% of the cases.

[0193] FIG. 19. Quantitative expression of GUCY2C

[0194] Quantitative RT-PCR with GUCY2C-specific primers (SEQ ID NO: 98, 99) show high and selective expression in normal colonic and gastric tissue (A) and GUCY2C-specific expression in colonic and gastric tumor samples (B). GUCY2C is detectable in 11/12 colon carcinomas and in 7/10 stomach carcinomas.

[0195] FIG. 20. Quantitative expression of SCGB3A2

[0196] Quantitative RT-PCR with SCGB3A2-specific primers (SEQ ID NO: 103, 104) show selective expression in lung samples and lung tumor samples. 19/20 lung tumor samples are SCGB3A2-positive, and SCGB3A2 is overexpressed by a factor of at least 10 in more than 50% of the samples. The following normal tissues were analyzed: liver, lung, lymph nodes, stomach, spleen, adrenal, kidney, esophagus, ovary, testis, thymus, skin, breast, pancreas, lymphocytes, activated lymphocytes, prostate, thyroid, fallopian tube, endometrium, cerebellum, brain.

[0197] FIG. 21. Immunofluorescence with SCGB3A2-specific antibodies

[0198] COS7 cells were transfected with a plasmid which codes for an SCGB3A2-GFP fusion protein. A. Detection of the transfected fusion protein with an SCGB3A2-specific rabbit antiserum (immunization with SEQ ID NO: 105). B. Detection of the transfected fusion protein by GFP fluorescence. C. Superimposition of the two fluorescences from A and B. The yellow color is produced at the points where the two fluorescences are superimposed and thus demonstrates the specificity of the SCGB3A2 antiserum.

[0199] FIG. 22. Diagrammatic depiction of claudin-18 splice variants

[0200] The two claudin-18 splice variants A1 and A2 differ in the N terminus and show different potential glycosylation sites.

[0201] FIG. 23. Quantitative expression of claudin-18, variant A1

[0202] Claudin-A1 is highly activated in a large number of tumor tissues. Particularly strong expression is found in gastric tumors, lung tumors, pancreatic carcinomas and esophageal carcinomas.

[0203] FIG. 24. Quantitative expression of claudin-18, variant A2

[0204] Variant A2 is, like variant A1, activated in many tumors.

[0205] FIG. 25. Use of claudin-18A2-specific antibodies (extracellular domain)

[0206] (Top) Staining of claudin-18A2-positive gastric carcinoma cells (SNU-16) with an antibody which was produced by immunization with a peptide (SEQ ID NO: 17). Membrane staining appears particularly strongly in the cell/cell interaction regions. A-preimmune, MeOH; B-immune serum MeOH, 5 μg/ml;

[0207] (Below) Demonstration of the specificity of the antibody by colocalization analysis in claudin-18A2 GFP-transfected 293T cells. A-Claudin-18A2 GFP; B-anti-claudin-A2; C-superimposition.

[0208] FIG. 26. Use of claudin-18A2-specific antibodies (extracellular domain)

[0209] Membrane staining of claudin-18A2-positive gastric carcinoma cells (SNU-16) with an antibody which was produced by immunization with a peptide (SEQ ID NO: 113, N-terminally located extracellular domain). A monoclonal antibody which is directed against E-cadherin was used for counterstaining A-antibody; B-counterstaining; C-superimposition.

[0210] FIG. 27. Use of antibodies against the C-terminal extracellular domain of claudin-18

[0211] (Left, top and below) Membrane staining of claudin-18A2-positive gastric carcinoma cells (SNU-16) with an antibody which was produced by immunization with a peptide (SEQ ID NO: 116, C-terminally located extra-cellular domain). A monoclonal antibody which is directed against E-cadherin was used for counter-staining (right top, below).

[0212] FIG. 28. Use of claudin-18A1-specific antibodies

[0213] (Top) Weak to absent staining of gastric carcinoma cells (SNU-16; claudin-18A2 positive) with an antibody which was produced by immunization with a claudin-18A1-specific peptide (SEQ ID NO: 115). A-anti-E-cadherin; B-anti-claudin-18A1; C-superimposition.

[0214] (Below) Demonstration of the specificity of the antibody by colocalization analysis in claudin-18A1-GFP-transfected 293T cells. A-GFP-claudin-18A1; B-anti-claudin-18A1; C-superimposition.

[0215] FIG. 29. Detection of claudin-18A2 in a Western blot.

[0216] Western blotting with lysates from various healthy tissues with a claudin-18A2-specific antibody directed against the epitope with SEQ ID NO: 17. 1--Stomach; 2--testis; 3--skin; 4--breast; 5--liver; 6--colon; 7--lung; 8--kidney; 9--lymph nodes.

[0217] FIG. 30. Claudin-18A2 Western blotting with samples from stomach and stomach tumors

[0218] Lysates from stomach and stomach tumors were blotted and tested using a claudin-18A2-specific antibody against the epitope having SEQ ID NO: 17. Stomach tumors show a less glycosylated form of claudin-18A2. PNGase F treatment of stomach lysates leads to the formation of the low-glycosylated form.

Left: 1--stomach No #A; 2--stomach Tu #A; 3--stomach No #B; 4--stomach Tu #B Right: 1--stomach No #A; 2--stomach No #B; 3--stomach No #B+PNGase F; 4--stomach Tu #C; 5--stomach Tu #D; 6--stomach Tu #D+PNGase F

[0219] FIG. 31. Expression of claudin-18 in lung tumors

[0220] Low-glycosylated claudin-18A2 variants were detected in lung tumors in accordance with FIG. 30. 1--Stomach No; 2--stomach Tu; 3-9--lung Tu.

[0221] FIG. 32. Immunohistochemlcal analysis of claudin-18 using claudin-18A2-specific antibodies in stomach tumor tissue

[0222] FIG. 33. Indirect immunofluorescence of stomach-specific Snu16 cells with a claudin-18-specific polyclonal antiserum

[0223] A. Staining with a preimmune serum generated before the immunization; B.

[0224] Staining with the claudin-18-specific serum.

[0225] FIG. 34. Quantitative expression of SLC13A1

[0226] Quantitative RT-PCR with SLC13A1-specific primers (SEQ ID NO: 121, 122) show high and selective expression in normal kidney tissue (A) and SLC13A1-specific expression in renal cell carcinomas (B). SLC13A1 transcription is detectable in 5/8 renal cell carcinomas.

[0227] FIG. 35. Cellular localization of SLC13A1

[0228] Immunofluorescence to demonstrate the cellular localization of SLC13A1 after transfection of a plasmid which provides an SLC13A1-GFP fusion protein. The membrane-associated fluorescence of the SLC13A1 fusion protein is to be seen clearly (as ring around the transfected cell).

[0229] FIG. 36. Quantitative expression of CLCA1

[0230] Quantitative RT-PCR with CLCA1-specific primers (SEQ ID NO: 125, 126) show high and selective expression in normal colonic tissue and stomach tissue (A) and CLCA1-specific expression in colonic and gastric tumor samples (8). CLCA1 is detectable in 6/12 colon carcinomas and in 7/10 stomach carcinomas.

[0231] FIG. 37. Quantitative expression of FLJ21477

[0232] Quantitative RT-PCR with FLJ21477-specific primers (SEQ ID NO: 127, 128) show high and selective expression in normal colonic and gastric tissue and weak expression in thymus, esophagus and brain (A) and the FLJ21477-specific expression in colonic tumor samples (B). FLJ21477 is detectable in 11/12 colon carcinomas.

[0233] FIG. 38. Quantitative expression of FLJ20694

[0234] Quantitative RT-PCR with FLJ20694-specific primers (SEQ ID NO: 129, 130) show high and selective expression in normal colonic and gastric tissue (A) and FLJ20694-specific overexpression in colonic and gastric tumor samples (B). FLJ20694 is detectable in 11/12 colon carcinomas and in 7/10 stomach carcinomas.

[0235] FIG. 39. Quantitative expression of FLJ21458

[0236] Quantitative RT-PCR with FLJ21458-specific primers (SEQ ID NO: 133, 134) show selective expression in testis, gastric and intestinal tissue. In addition, FLJ21458-specific transcripts were detectable in 20/20 colonic tumors and in 7/11 colonic metastases. The following normal tissues were analyzed: liver, lung, lymph nodes, spleen, adrenal, kidney, esophagus, ovary, testis, thymus, skin, breast, pancreas, lymphocytes, activated lymphocytes, prostate, thyroid, fallopian tube, endometrium, cerebellum, brain.

[0237] FIG. 40. Immunofluorescence with FLJ21458-specific antibodies

[0238] (Top) 293 cells were transfected with a plasmid which codes for an FLJ21458-GFP fusion protein. A: detection of the transfected fusion protein with an FLJ21458-specific rabbit antiserum (immunization with SEQ ID NO: 136). B: detection of the transfected fusion protein by GFP fluorescence. C: superimposition of the two fluorescences from A and B. The yellow color is produced at the points where the two fluorescences are superimposed and thus demonstrates the specificity of the FLJ21458 antiserum.

[0239] (Below) Analysis of Snu16 cells which endogenously synthesize FLJ21458. A: protein detection using an FLJ21458-specific rabbit antiserum (immunization with SEQ ID NO: 136). B: detection of the membrane protein E-cadherin. C: superimposition of the two fluorescences from A and B. The yellow color is produced at the points where the two fluorescences are superimposed, and demonstrates the membrane localization of FLJ21458.

[0240] FIG. 41. Sequences

[0241] The sequences to which reference is made herein are shown.

EXAMPLES

Material and methods

[0242] The terms "in silico", "electronic" and "virtual cloning" refer solely to the utilization of methods based on databases, which may also be used to simulate laboratory experimental processes.

[0243] Unless expressly defined otherwise, all other terms and expressions are used so as to be understood by the skilled worker. The techniques and methods mentioned are carried out in a manner known per se and are described, for example, in Sambrook et al., Molecular Cloning: A Laboratory Manual, 2nd Edition (1989) Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y. All methods including the use of kits and reagents are carried out according to the manufacturers' information.

[0244] Datamining-Based Strategy for Determining New Tumor-Associated Genes

[0245] Two in silico strategies, namely GenBank keyword search and the cDNAxProfiler, were combined. Utilizing the NCBI ENTREZ Search and Retrieval System (http://www.ncbi.nlm.nih.gov/Entrez), a GenBank search was carried out for candidate genes annotated as being specifically expressed in specific tissues (Wheeler et al., Nucleic Acids Research 28:10-14, 2000).

[0246] Carrying out queries with keywords such as "colon-specific gene", "stomach-specific gene" or "kidney-specific gene", candidate genes (GOI, genes of interest) were extracted from the databases. The search was restricted to part of the total information of these databases by using the limits "homo sapiens", for the organism, and "mRNA", for the type of molecule.

[0247] The list of the GOI found was curated by determining different names for the same sequence and eliminating such redundancies.

[0248] All candidate genes obtained by the keyword search were in turn studied with respect to their tissue distribution by the "electronic Northern" (eNorthen) method. The eNorthern is based on aligning the sequence of a GOI with an EST (expressed sequence tag) database (Adams et al., Science 252:1651, 1991) (http://www.ncbi.nlm.nih.gov/BLAST). The tissue origin of each EST which is found to be homologous to the inserted GOI can be determined and in this way the sum of all ESTs produces a preliminary assessment of the tissue distribution of the GOI. Further studies were carried out only with those GOI which had no homologies to EST from non organ-specific normal tissues. This evaluation also took into account that the public domain contains wrongly annotated cDNA libraries (Scheurle et al., Cancer Res. 60:4037-4043, 2000) (www.fau.edu/cmbb/publications/cancergenes6.htm).

[0249] The second datamining method utilized was the cDNA xProfiler of the NCBI Cancer Genome Anatomy Project (http://cgap.nci.nih.gov/Tissues/xProfiler) (Hillier et al., Genome Research 6:807-828, 1996; Pennisi, Science 276:1023-1024, 1997). This allows pools of transcriptomes deposited in databases to be related to one another by logical operators. We have defined a pool A to which all expression libraries prepared for example from colon were assigned, excluding mixed libraries. All cDNA libraries prepared from normal tissues other than colon were assigned to pool B. Generally, all cDNA libraries were utilized independently of underlying preparation methods, but only those with a size >1000 were admitted. Pool B was digitally subtracted from pool A by means of the BUT NOT operator. The set of GOI found in this manner was also subjected to eNorthern studies and validated by a literature research.

[0250] This combined datamining includes all of the about 13 000 full-length genes in the public domain and predicts out of these genes having potential organ-specific expression.

[0251] All other genes were first evaluated in normal tissues by means of specific RT-PCR. All GOI which had proved to be expressed in non-organ specific normal tissues had to be regarded as false-positives and were excluded from further studies. The remaining ones were studied in a large panel of a wide variety of tumor tissues. The antigens depicted below proved here to be activated in tumor cells.

[0252] RNA Extraction, Preparation of Poly-d(T) Primed cDNA and Conventional RT-PCR Analysis

[0253] Total RNA was extracted from native tissue material by using guanidium isothiocyanate as chaotropic agent (Chomczynski Sacchi, Anal. Biochem. 162:156-9, 1987). After extraction with acidic phenol and precipitation with isopropanol, said RNA was dissolved in DEPC-treated water.

[0254] First strand cDNA synthesis from 2-4 μg of total RNA was carried out in a 20 μl reaction mixture by means of Superscript II (Invitrogen), according to the manufacturer's information. The primer used was a dT(18) oligonucleotide. Integrity and quality of the cDNA were checked by amplification of p53 in a 30 cycle PCR (sense CGTGAGCGCTTCGAGATGTTCCG (SEQ ID NO. 138), antisense CCTAACCAGCTGCCCAACTGTAG (SEQ ID NO. 139), hybridization temperature 67° C.

[0255] An archive of first strand cDNA was prepared from a number of normal tissues and tumor entities. For expression studies, 0.5 μl of these cDNAs was amplified in a 30 μl reaction mixture, using GOI-specific primers (see below) and 1 U of HotStarTaq DNA polymerase (Qiagen). Each reaction mixture contained 0.3 mM dNTPs, 0.3 μM of each primer and 3 μl of 10× reaction buffer. The primers were selected so as to be located in two different exons, and elimination of the interference by contaminating genomic DNA as the reason for false-positive results was confirmed by testing nonreverse-transcribed DNA as template. After 15 minutes at 95° C. to activate the HotStarTaq DNA polymerase, 35 cycles of PCR were carried out (1 min at 94° C., 1 min at the particular hybridization temperature, 2 min at 72° C. and final elongation at 72° C. for 6 min). 20 μl of this reaction were fractionated and analyzed on an ethidium bromide-stained agarose gel.

[0256] The following primers were used for expression analysis of the corresponding antigens at the hybridization temperature indicated.

TABLE-US-00001 GPR35 (65° C.) (SEQ ID NO. 20) Sense: 5'-AGGTACATGAGCATCAGCCTG-3' (SEQ ID NO. 21) Antisense: 5'-GCAGCAGTTGGCATCTGAGAG-3' GUCY2C (62° C.) (SEQ ID NO. 22) Sense: 5'-GCAATAGACATTGCCAAGATG-3' (SEQ ID NO. 23) Antisense: 5'-AACGCTGTTGATTCTCCACAG-3' SCGB3A2 (66° C.) (SEQ ID NO. 37) Sense: 5'-CAGCCTTTGTAGTTACTCTGC-3' (SEQ ID NO. 38) Antisense: 5'-TGTCACACCAAGTGTGATAGC-3' Claudin18A2 (68° C.) (SEQ ID NO. 39) Sense1: 5'-GGTTCGTGGTTTCACTGATTGGGATTGC-3' (SEQ ID NO. 40) Antisense1: 5'-CGGCTTTGTAGTTGGTTTCTTCTGGTG-3' (SEQ ID NO. 107) Sense2: 5'-TGTTTTCAACTACCAGGGGC-3' (SEQ ID NO. 108) Antisense2: 5'-TGTTGGCTTTGGCAGAGTCC-3' Claudin18A1 (64° C.) (SEQ ID NO. 109) Sense: 5'-GAGGCAGAGTTCAGGCTTCACCGA-3' (SEQ ID NO. 110) Antisense: 5'-TGTTGGCTTTGGCAGAGTCC-3' SLC13A1-(64° C.) (SEQ ID NO. 50) Sense: 5'-CAGATGGTTGTGAGGAGTCTG-3' (SEQ ID NO. 49) Antisense: 5'-CCAGCTTTAACCATGTCAATG-3' CLCA1 (62° C.) (SEQ ID NO. 67) Sense: 5'-ACACGAATGGTAGATACAGTG-3' (SEQ ID NO. 68) Antisense: 5'-ATACTTGTGAGCTGTTCCATG-3' FLJ21477 (68° C.) (SEQ ID NO. 69) Sense: 5'-ACTGTTACCTTGCATGGACTG-3' (SEQ ID NO. 70) Antisense: 5'-CAATGAGAACACATGGACATG-3' FLJ20694 (64° C.) (SEQ ID NO. 140) Sense: 5'-CCATGAAAGCTCCATGTCTA-3' (SEQ ID NO. 72) Antisense: 5'-AGAGATGGCACATATTCTGTC-3' Ebner (70° C.) (SEQ ID NO. 73) Sense: 5'-ATCGGCTGAAGTCAAGCATCG-3' (SEQ ID NO. 74) Antisense: 5'-TGGTCAGTGAGGACTCAGCTG-3' Plunc (55° C.) (SEQ ID NO. 75) Sense: 5'-TTTCTCTGCTTGATGCACTTG-3' (SEQ ID NO. 76) Antisense: 5'-GTGAGCACTGGGAAGCAGCTC-3' SLC26A9 (67° C.) (SEQ ID NO. 141) Sense: 5'-GGCAAATGCTAGAGACGTGA-3' (SEQ ID NO. 78) Antisense: 5'-AGGTGTCCTTCAGCTGCCAAG-3' THC1005163 (60° C.) (SEQ ID NO. 79) Sense: 5'-GTTAAGTGCTCTCTGGATTTG-3' LOC134288 (64° C.) (SEQ ID NO. 80) Sense: 5'-ATCCTGATTGCTGTGTGCAAG-3' (SEQ ID NO. 81) Antisense: 5'-CTCTTCTAGCTGGTCAACATC-3' THC943866 (59° C.) (SEQ ID NO. 82) Sense: 5'-CCAGCAACAACTTACGTGGTC-3' (SEQ ID NO. 83) Antisense: 5'-CCTTTATTCACCCAATCACTC-3' FLJ21458 (62° C.) (SEQ ID NO. 86) Sense: 5'-ATTCATGGTTCCAGCAGGGAC-3' (SEQ ID NO. 87) Antisense: 5'-GGGAGACAAAGTCACGTACTC-3'.

[0257] Preparation of Random Hexamer-Primed cDNA and Quantitative Real-Time PCR

[0258] The expression of several genes was quantified by real-time PCR. The PCR products were detected using SYBR Green as intercalating reporter dye. The reporter fluorescence of SYBR Green is suppressed in solution and the dye is active only after binding to double-stranded DNA fragments. The increase in the SYBR Green fluorescence as a result of the specific amplification using GOI-specific primers after each PCR cycle is utilized for quantification. Expression of the target gene is quantified absolutely or relative to the expression of a control gene with constant expression in the tissues to be investigated. Expression was measured after standardization of the samples against 18s RNA as so-called housekeeping gene using the ΔΔ-C_t method (PE Biosystems, USA). The reactions were carried out in duplicates and determined in triplicates. The QuantiTect SYBR Green PCR kit (Qiagen, Hilden) was used in accordance with the manufacturer's instructions. The cDNA was synthesized using the high capacity cDNA Archive Kit (PE Biosystems, USA) with use of hexamer primers in accordance with the manufacturer's instructions. Each 5 μl portions of the diluted cDNA were employed in a total volume of 25 μl for the PCR: sense primer 300 nM, antisense primer 300 nM; initial denaturation 95° C. for 15 min; 95° C. for 30 sec; annealing for 30 sec; 72° C. for 30 sec; 40 cycles. The sequences of the primers used are indicated in the respective examples.

[0259] Cloning and Sequence Analysis

[0260] Cloning of full-lengths and gene fragments took place by conventional methods. To ascertain the sequence, corresponding antigenes were amplified using the proofreading polymerase pfu (Stratagene). After completion of the PCR, adenosine was ligated by means of HotStarTaq DNA polymerase to the ends of the amplicon in order to clone the fragments in accordance with the manufacturer's instructions into the TOPO-TA vector. The sequencing was carried out by a commercial service. The sequences were analysed using conventional prediction programs and algorithms.

[0261] Western Blotting

[0262] Cells from cell culture (endogenous expression of the target gene or synthesis of the target protein after transfection of an expression vector which encodes the target protein) or tissue samples which might contain the target protein are lysed in a 1% SDS solution. The SDS denatures the proteins present in the lysate. The lysates of an experimental mixture are fractionated according to size by electrophoresis on 8-15% denaturing polyacrylamide gels (containing 1% SDS) depending on the expected protein size (SDS polyacrylamide gel electrophoresis, SDS-PAGE). The proteins are then transferred by the semi-dry electroblotting method (Biorad) to nitrocellulose membrane (Schleicher & Schull) on which the desired protein can be detected. For this purpose, the membrane is initially blocked (e.g. with milk powder) and then incubated with the specific antibody in a dilution of 1:20-1:200 (depending on the specificity of the antibody) for 60 minutes. After a washing step, the membrane is incubated with a second antibody coupled to a marker (e.g. enzymes such as peroxidase or alkaline phosphatase) which recognizes the first antibody. After a further washing step, subsequently the target protein is visualized in a color or chemiluminescence reaction, on the membrane by means of an enzyme reaction (e.g. ECL, Amersham Bioscience). The result is documented by photographing with a suitable camera.

[0263] Analysis of protein modifications usually takes place by Western blotting. Glycosilations, which usually have a size of several kDa, lead to a larger total mass of the target protein, which can be fractionated in the SDS-PAGE. To detect specific 0- and N-glycosidic linkages, protein lysates from tissues or cells are incubated before denaturation by SDS with 0- or N-glycosidases (in accordance with their respective manufacturer's instructions, e.g. PNgase, endoglycosidase F, endoglycosidase H, Roche Diagnostics). This is followed by Western blotting as described above. Thus, if there is a reduction in the size of a target protein after incubation with a glycosidase it is possible to detect a specific glycosilation and, in this way, also analyse the tumor specificity of a modification. The exact position of the glycosilated amino acid can be predicted with algorithms and prediction programs.

[0264] Immunofluorescence

[0265] Cells of established cell lines which either synthesize the target protein endogenously (detection of the RNA in RT-PCR or of the protein by Western blotting) or else have been transfected with plasmid DNA before the IF are used. A wide variety of methods (e.g. electroporation, liposome-based transfection, calcium phosphate precipitation) are well established for transfecting cell lines with DNA (e.g. Lemoine et al. Methods Mol. Biol. 1997; 75: 441-7). The transfected plasmid may in the immunofluorescence encode the unmodified protein or else couple various amino acid markers to the target protein. The most important markers are, for example, the fluorescing "green fluorescent protein" (GFP) in its various differentially fluorescing forms and short peptide sequences of 6-12 amino acids for which high-affinity and specific antibodies are available. Cells which synthesize the target protein are fixed with paraformaldehyde, saponin or methanol. The cells can then if required be permeabilized by incubation with detergents (e.g. 0.2% Triton X-100). After the fixation/permeabilization, the cells are incubated with a primary antibody which is directed against the target protein or against one of the coupled markers. After a washing step, the mixture is incubated with a second antibody coupled to a fluorescent marker (e.g. fluorescin, Texas Red, Dako) which binds to the first antibody. The cells labeled in this way are then covered with a layer of glycerol and analysed with the aid of a fluorescence microscope according to the manufacturer's instructions. Specific fluorescence emissions are achieved in this case by specific excitation depending on the substances employed. The analysis normally allows reliable localization of the target protein, the antibody quality and the target protein being confirmed in double stainings to stain in addition to the target protein also the coupled amino acid markers or other marker proteins whose localization has been described in the literature. GFP and its derivatives represents a special case that can be directly excited and itself fluoresces, so that no antibodies are necessary for the detection.

[0266] Immunohistochemistry

[0267] IHC serves specifically for (1) being able to estimate the amount of target protein in tumor and normal tissues, (2) analysing how many cells in the tumor and healthy tissue synthesize the target gene, and/or (3) defining the cell type in a tissue (tumor, healthy cells) in which the target protein is detectable. Different protocols must be used depending on the individual antibody (e.g. "Diagnostic Immunohistochemistry by David J., MD Dabbs ISBN: 0443065667" or in "Microscopy, Immunohistochemistry, and Antigen Retrieval Methods: For Light and Electron Microscopy ISBN: 0306467704").

[0268] Immunohistochemistry (IHC) on specific tissue samples serves to detect protein in the corresponding tissue. The aim of this method is to identify the localization of a protein in a functionally intact tissue aggregate. IHC serves specifically for (1) being able to estimate the amount of target protein in tumor and normal tissues, (2) analysing how many cells in tumor and healthy tissue synthesize the target gene, and (3) defining the cell type in a tissue (tumor, healthy cells) in which the target protein is detectable. Alternatively, the amounts of protein of a target gene can be quantified by tissue immunofluorescence using a digital camera and suitable software (e.g. Tillvision, Till-photonics, Germany). The technology has frequently been published, and details of staining and microscopy can therefore be found for example in "Diagnostic Immunohistochemistry" by David J., MD Dabbs ISBN: 0443065667 or "Microscopy, Immunohistochemistry, and Antigen Retrieval Methods: For Light and Electron Microscopy" ISBN: 0306467704. It should be noted that, because of the properties of antibodies, different protocols have to be used (an example is described below) in order to obtain a valid result.

[0269] Ordinarily, histologically defined tumor tissues and, as reference, comparable healthy tissues are employed in the IHC. It is moreover possible to use as positive and negative controls cell lines in which the presence of the target gene is known through RT-PCR analyses. A background control must always be included.

[0270] Fixed tissue (e.g. fixation with aldehyde-containing substances, formaldehyde, paraformaldehyde or in alcoholic solutions) or shock-frozen tissue pieces with a thickness of 1-10 μm are applied to a glass-support. Paraffin-embedded samples are deparaffinated for example with xylene. The samples are washed with TBS-T and blocked in serum. This is followed by incubation with the first antibody (dilution: 1:2 to 1:2000) for 1-18 hours, with affinity-purified antibodies normally being used. A washing step is followed by incubation with a second antibody which is coupled to an alkaline phosphatase (alternative: for example peroxidase), and. is directed against the first antibody, for about 30-60 minutes. This is followed by color reaction using color substrates which are converted by the bound enzymes (cf. for example, Shi et al., J. Histochem. CytOchem. 39: 741-748, 1991; Shin et al., Lab. Invest. 64: 693-702, 1991). To demonstrate the antibody specificity, the reaction can be blocked by previous addition of the immunogen.

[0271] Immunization

[0272] (See also Monoclonal Antibodies: A Practical Approach by Philip Shepherd, Christopher Dean isbn 0-19-963722-9; Antibodies: A Laboratory Manual by Ed Harlow, David Lane ISBN: 0879693142; Using Antibodies: A Laboratory Manual: Portable Protocol NO. by Edward Harlow, David Lane, Ed Harlow ISBN: 0879695447). The process for preparing antibodies is described briefly below, and details can be found in the cited publications. Firstly, animals (e.g. rabbits) are immunized by a first injection of the desired target protein. The animal's immune response to the immunogen can be enhanced by a second or third immunization within a defined period (about 2-4 weeks after the preceding immunization). Again after various defined periods (first bleeding after 4 weeks, then about every 2 weeks with a total of up to 5 samplings), blood is taken from the animals, and an immune serum is obtained therefrom.

[0273] The animals are usually immunized by one of four well-established methods, with other methods also being available. It is moreover possible to immunize with peptides which are specific for the target protein, with the complete protein or with extracellular partial sequences of a protein which can be identified experimentally or via prediction programs.

[0274] (1) In the first case, peptides (length: 8-12 amino acids) conjugated to KLH (keyhole limpet hemocyanin) are synthesized by a standardized in vitro method, and these peptides are used for the immunization. Usually, 3 immunizations are carried out with a concentration of 5-1000 μg/immunization. The immunization can also be carried out as service from service providers.

[0275] (2) Alternatively, the immunization can be carried out with recombinant proteins. For this purpose, the cloned DNA of the target gene is cloned into an expression vector, and the target protein is synthesized in analogy to the conditions of the particular manufacturer (e.g. Roche Diagnostics, Invitrogen, Clontech, Qiagen) for example cell-free in vitro, in bacteria (e.g. E. coli), in yeast (e.g. S. pombe), in insect cells or in mammalian cells. After synthesis in one of the systems, the target protein is purified, the purification in this case usually taking place by standardized chromatographic methods. It is also possible in this connection to use for the immunization proteins which have a molecular anchor as aid for purification (e.g. His tag, Qiagen; FLAG tag, Roche Diagnostics; Gst fusion proteins). A large number of protocols is to be found for example in the "Current Protocols in Molecular Biology", John Wiley & Sons Ltd., Wiley Interscience.

[0276] (3) If a cell line which synthesizes the desired protein endogenously is available, this cell line can also be used to produce the specific antiserum. In this case, the immunization takes place in 1-3 injections in each case with about 1-5×10⁷ cells.

[0277] (4) The immunization can also take place by injection of DNA (DNA immunization). For this purpose, the target gene is initially cloned into an expression vector so that the target sequence is under the control of a strong eukaryotic promoter (e.g. CMV promoter). Subsequently, 5-100 μg of DNA are transferred as immunogen using a "gene gun" into capillary regions with a strong blood flow in an organism (e.g. mouse, rabbit). The transferred DNA is taken up by the animal's cells, the target gene is expressed, and the animal finally develops an immune response to the target gene (Jung et al., Mol Cells 12:41-49, 2001; Kasinrerk et al., Hybrid Hybridomics 21:287-293, 2002).

[0278] Quality Control of the Polyclonal Serum or Antibody

[0279] Assays based on cell culture with subsequent Western blotting are most suitable for demonstrating specificity (various variations are described for example in "Current Protocols in Protein Chemistry", John Wiley & Sons Ltd., Wiley InterScience). For the demonstration, cells are transfected with a cDNA, which is under the control of a strong eukaryotic promoter (e.g. cytomegalovirus promoter), for the target protein. A wide variety of methods (e.g. electroporation, liposome-based transfection, calcium phosphate precipitation) are well established for transfecting cell lines with DNA (e.g. Lemoine et al., Methods Mol. Biol. 75:441-7, 1997). It is also possible alternatively to use cell lines which express the target gene endogenously (demonstration by target gene-specific RT-PCR). As control, in the ideal case homologous genes are also transfected in the experiment, in order to be able to demonstrate in the following Western blot the specificity of the analysed antibody.

[0280] In the subsequent Western blot, cells from cell culture or tissue samples which might contain the target protein are lysed in a 1% SDS solution, and the proteins are denatured thereby. The lysates are fractionated according to size by electrophoresis on 8-15% denaturing polyacrylamide gels (contain 1% SDS) (SDS polyacrylamide gel electrophoresis, SDS-PAGE). The proteins are then transferred by one of a plurality of blotting methods (e.g. semi-dry electroblot; Biorad) to a specific membrane (e.g. nitrocellulose, Schleicher & Schull). The desired protein can be visualized on this membrane. For this purpose, the membrane is first incubated with the antibody which recognizes the target protein (dilution about 1:20-1:200, depending on the specificity of the antibody) for 60 minutes. After a washing step, the membrane is incubated with a second antibody which is coupled to a marker (e.g. enzymes such as peroxidase or alkaline phosphatase) and which recognizes the first antibody. It is then possible in a color or chemiluminescent reaction to visualize the target protein on the membrane (e.g. ECL, Amersham Bioscience). An antibody with a high specificity for the target protein should in the ideal case recognize only the desired protein itself

[0281] Various methods are used to confirm the membrane localization of the target protein identified in the in silica approach. An important and well-established method using the antibodies described above is immuno-fluorescence (IF). Cells of established cell lines which either synthesize the target protein (detection of the RNA in an RT-PCR or of the protein in a Western blot) or else have been transfected with plasmid DNA are used for this. A wide variety of methods (e.g. electroporation, liposome-based transfection, calcium phosphate precipitation) are well established for transfection of cell lines with DNA (e.g. Lemoine et al., Methods Mol. Biol. 75:441-7, 1997). The plasmid transfected into the cells can in the immunofluorescence encode the unmodified protein or else couple various amino acid markers to the target protein. The principal markers are, for example, the fluorescent "green fluorescent protein" (GFP) in its various differentially fluorescent forms, short peptide sequences of 6-12 amino acids for which high-affinity and specific antibodies are available, or the short amino acid sequence Cys-Cys-X-X-Cys-Cys which can bind via its cysteine specific fluorescent substances (Invitrogen). Cells which synthesize the target protein are fixed for example with paraformaldehyde or methanol. The cells can then, if required, be permeabilized by incubation with detergents (e.g. 0.2% Triton X-100). The cells are then incubated with a primary antibody which is directed against the target protein or against one of the coupled markers. After a washing step, the mixture is incubated with a second antibody which is coupled to a fluorescent marker (e.g. fluorescin, Texas Red, Dako) and which binds to the, first antibody. The cells labeled in this way are then covered with a layer of glycerol and analysed with the aid of a fluorescence microscope according to the manufacturer's instructions. Specific fluorescence emissions are achieved in this case by specific excitation depending on the substances employed. The analysis usually permits reliable localization of the target protein, the antibody quality and the target protein being confirmed in double stainings to stain in addition to the target protein also the coupled amino acid markers or other marker proteins whose localization has already been described in the literature. GFP and its derivatives represents a special case, being excitable directly and themselves fluorescing. The membrane permeability, which can be controlled through the use of detergents, permits demonstration in the immunofluorescence of whether an immunogenic epitope is located inside or outside the cell. The prediction of the selected proteins can thus be supported experimentally. An alternative possibility is to detect extracellular domains by means of flow cytometry. For this purpose, cells are fixed under non-permeabilizing conditions (e.g. with PBS/Na azide/2%. FCS/5 mM EDTA) and analysed in a flow cytometer in accordance with the manufacturer's instructions. Only extracellular epitopes can be recognized by the antibody to be analysed in this method. A difference from immunofluorescence is that it is possible to distinguish between dead and living cells by use of, for example, propidium iodide or Trypan blue, and thus avoid false-positive results.

[0282] Affinity Purification

[0283] Purification of the polyclonal sera took place in the case of the peptide antibodies entirely, or in the case of the antibodies against recombinant proteins in part, as service by the contracted companies. For this purpose; in both cases, the appropriate peptide or recombinant protein was covalently bonded to a matrix, and the latter was, after the coupling, equilibrated with a native buffer (PBS: phosphate buffered saline) and then incubated with the crude serum. After a further PBS washing step, the antibody was eluted with 100 mM glycine, pH 2.7, and the eluate was immediately neutralized in 2M TRIS, pH 8. The antibodies purified in this way could then be employed for specific detection of the target proteins both by Western blotting and by immunofluorescence.

[0284] Preparation of EGFP Transfectants

[0285] For the immunofluorescence microscopy of heterologously expressed tumor-associated antigens, the complete ORF of the antigens was cloned in pEGFP-C1 and pEGFP-N3 vectors (Clontech). CHO and NIH3T3 cells cultivated on slides were transfected with the appropriate plasmid constructs using Fugene transfection reagent (Roche) in accordance with the manufacturer's instructions and, after 12-24 h, analysed by immunofluorescence microscopy.

Example 1

Identification of GPR35 as Diagnostic and Therapeutic Cancer Target

[0286] GPR35 (SEQ ID NO: 1) and its translation product (SEQ ID NO: 9) have been described as putative G protein-coupled receptor. The sequence is published in Genbank under accession No. AF089087. This transcript codes for a protein of 309 amino acids with a molecular weight of 34 kDa. It was predicted that GPR35 belongs to the superfamily of G protein-coupled receptors with 7 transmembrane domains (O'Dowd et al., Genomics 47:310-13, 1998). In order to confirm the predicted localization of GPR35 in the cell, the protein was fused to eGFP as reporter molecule and, after transfection of the appropriate plasmid, expressed heterologously in 293 cells. The localization was then analysed in a fluorescence microscope. It was confirmed according to the present technology that GPR35 is an integral transmembrane molecule (FIG. 17). Investigation to date on human GPR35 (see, inter alia, Horikawa Y, Oda N, Cox N J, Li X, Orho-Melander M, Hara M, Hinokio Y, Lindner T H, Mashima H, Schwarz P E, del Bosque-Plata L, Horikawa Y, Oda Y, Yoshiuchi I, Colilla S, Polonsky K S, Wei S, Concannon P, Iwasaki N, Schulze J, Baler L J, Bogardus C, Groop L, Boerwinkle E, Hanis C L, Bell G I Nat Genet. 2000 October; 26(2):163-75) suggested that GPR35 is activated in many healthy tissues. The reading frame of the gene comprises a single exon. According to the present technology, a gene-specific primer pair (SEQ ID NO: 20, 21). for GPR35 was used in RT-PCR analyses to amplify cDNA in the colon and in colon carcinoma (13/26). By contrast, no significant expression is detectable in other normal tissues. Because of the particular fact that GPR35 consists of a single exon, genomic DNA impurities cannot be detected with intron-spanning primers. In order to preclude genomic contamination of the RNA samples, therefore, all RNAs were treated with DNAse. GPR35 transcripts were detected according to the present technology only in the colon, in the rectum, in the testis and in colon carcinomas using DNA-free RNA

TABLE-US-00002 TABLE 1 GPR35 expression in normal tissues Normal tissue Expression Brain - Cerebellum - Myocardium - Skeletal muscle - Rectum ++ Stomach - Colon ++ Pancreas - Kidney - Testis - Thymus - Mammary glands - Ovary - Uterus n.d. Skin - Lung - Thyroid - Lymph nodes - Spleen - PBMC - Adrenal - Esophagus - Small intestine + Prostate - (nd = not determined)

[0287] The selective and high expression of GPR35 transcripts in normal colonic tissue and in colon carcinoma biopsies (FIG. 1) was not previously known and can be utilized according to the present technology for molecular diagnostic methods such as RT-PCR for detecting disseminating tumor cells in the serum and bone marrow and for detecting disseminating tumor cells in the serum and bone marrow and for detecting metastases in other tissues. Quantitative RT-PCR with specific primers (SEQ ID NO: 88 and 89) also confirms that GPR35 is a highly selective intestine-specific differentiation antigen which is also contained in intestinal tumors and in intestinal tumor metastases. In some intestinal tumors, it is in fact overexpressed by one log compared with normal intestine (FIG. 18). Antibodies were produced by immunizing rabbits for detecting GPR35 protein. The following peptides were used to propagate these antibodies:

TABLE-US-00003 SEQ ID NO: 90 GSSDLTWPPAIKLGC (AA 9-23) SEQ ID NO: 91: DRYVAVRHPLRARGLR (AA 112-127) SEQ ID NO: 92: VAPRAKAHKSQDSLC (C terminus) SEQ ID NO: 93 CFRSTRHNFNSMR (extracell. domain 2)

Stainings with these antibodies for example in a Western blot confirm the expression in tumors. All 4 extracellular domains of GPR35 (position of the predicted extracellular domains in the sequence of SEQ ID NO: 9 AA 1-22 (SEQ ID NO: 94); AA 81-94 (SEQ ID NO: 95); AA 156-176 (SEQ. ID NO: 96); AA 280-309 (SEQ ID NO: 97)) can be used according to the present technology as target structures of monoclonal antibodies. These antibodies bind specifically to the cell surface of tumor cells and can be used both for diagnostic and for therapeutic methods. Overexpression of GPR35 in tumors provides additional support for such a use. In addition, the sequences coding for proteins can be used according to the present technology as vaccine (RNA, DNA, peptide, protein) for inducing tumor-specific immune responses (T-cell and B-cell-mediated immune responses). In addition, it has surprisingly been found that a further start codon exists 5' in front of the generally known start codon and expresses an N-terminally extended protein.

[0288] It has thus been found according to the present technology that GPR35, a protein which was previously described as expressed ubiquitously, is tumor-associated overexpressed, selectively in gastrointestinal tumors, especially in tumors of the colon. GPR35 is therefore suitable in particular as molecular target structure for the diagnosis and treatment of these tumors. Investigation to date of human GPR35, cf., for example, Horikawa Y, Oda N, Cox N J, Li X, Orho-Melander M, Hara M, Hinokio Y, Lindner T H, Mashima H, Schwarz P E, del Bosque-Plata L, Horikawa Y, Oda Y, Yoshiuchi I, Colilla S, Polonsky K S, Wei S, Concannon P, Iwasaki N, Schulze J, Baier L J, Bogardus C, Groop L, Boerwinkle E, Hanis C L, Bell G I Nat Genet. 2000 October; 26(2):163-75 suggested that GPR35 is activated in many healthy tissues. By contrast, the investigations according to the present technology showed that GPR35 is surprisingly not significantly detectable in most normal tissues and, in contrast thereto, is highly activated in primary and metastatic colon tumors. In addition, besides the described GPR35 sequence, according to the present technology a novel translation variant which makes use of an alternative start codon has been found (SEQ ID NO: 10):

[0289] GPR35 is a member of the group of G-coupled receptors (GPCR), a very large protein family whose structure and function has been very well investigated. GPCR are outstandingly suitable as target structures for the development of pharmaceutically active substances, because the methods necessary therefor (e.g. receptor expression, purification, ligand screening, mutagenizing, functional inhibition, selection of agonistic and antagonistic ligands, radiolabeling of ligands) is very well developed and described in detail, cf., for example, "G Protein-Coupled Receptors" by Tatsuya Haga, Gabriel Berstein and Gabriel Bernstein ISBN: 0849333849 and in "Identification and Expression of G-Protein Coupled Receptors Receptor Biochemistry and Methodology" by Kevin R. Lynch ASIN: 0471183105. Realization according to the present technology that GPR35 is undetectable in most healthy tissues but undergoes tumor-associated expression on the cell surface, enables it to be used as tumor-associated target structure for example for pharmaceutically active ligands, especially in conjugation for example with radioactive molecules as pharmaceutical substances. It is possible in a particular embodiment to use radiolabeled ligands which bind to GPR35 for detecting tumor cells or for treating colon tumors in vivo.

Example 2

Identification of GUCY2C in Hepatic and Ovarian Tumors and Novel GUCY2C Splice Variants as Diagnostic and Therapeutic Cancer Targets

[0290] Guanylate cyclase 2C (SEQ ID NO: 2; translation product: SEQ ID NO: 11)--a type I transmembrane protein--belongs to the family of natriuretic peptide receptors. The sequence is published in Genbank under the accession number NM_--004963. Binding of the peptides guanylin and uroguanylin or else heat-stable enterotoxins (STa) increases the intracellular cGMP concentration, thus inducing signal transduction processes inside the cell. Recent investigations indicate that expression of GUCY2C also extends to extraintestinal regions such as, for example, primary and metastatic adenocarcinomas of the stomach and of the esophagus (Park et al., Cancer Epidemiol Biomarkers Prev. 11: 739-44, 2002). A splice variant of GUCYC which is found both in normal and transformed tissue of the intestine comprises a 142 bp deletion in exon 1, thus preventing translation of a GUCY2C-like product (Pearlman et al., Dig. Dis. Sci. 45:298-05, 2000). The only splice variant described to date leads to no translation product.

[0291] The aim according to the present technology was to identify tumor-associated splice variants for GUCY2C which can be utilized both for diagnosis and for therapy. RT-PCR investigations with a GUCY2C-specific primer pair (SEQ ID NO: 22, 23, 98, 99) show pronounced expression of GUCY2C transcripts in normal colon and stomach, and weak expression in liver, testis, ovary, thymus, spleen, brain and lung (tab. 2, FIG. 19). Expression in colon and stomach was at least 50 times higher than in all other normal tissues. Marked GUCY2C transcript levels were detected in colon carcinoma and stomach carcinoma (tab. 2). These results were specified by a quantitative PCR analysis and showed pronounced GUCY2C expression in normal colon, ileum, and in almost all colon carcinoma samples investigated (FIG. 2, 19B). A massive overexpression was detectable in some colon carcinoma samples. In addition, expression is found in 7/10 stomach tumors. We also surprisingly found that the gene is activated in many other previously undescribed tumors, inter alia ovarian, breast, liver and prostate tumors (FIG. 19B, tab. 2).

TABLE-US-00004 TABLE 2 GUC2C expression in normal and tumor tissues Normal tissues Expression Tumor type Expression Brain + Colon +++ Cerebellum carcinoma Myocardium Pancreatic - Skeletal - carcinoma muscle Esophageal - Myocardium carcinoma Stomach +++ Stomach +++ Colon +++ carcinoma Pancreas - Bronchial - Kidney - carcinoma Liver + Mammary -+ Testis ++ carcinoma Thymus + Ovarian + Breast - carcinoma Ovary + Endometrial Uterus + carci Skin ENT tumors Lung + Renal cell Thyroid carcinoma Lymph nodes - Prostate + Spleen + carcinoma PBMC - Liver + Prostate - carcinoma

[0292] The following primer pairs were used to detect splice variants in colonic tissue and colon carcinoma tissue:

TABLE-US-00005 (SEQ ID NO: 24, 29) GUCY2C-118s/GUCY2C-498as; (SEQ ID NO: 25, 30) GUCY2C-621s/GUCY2C-1140as; (SEQ ID NO: 26, 31) GUCY2C-1450s/GUCY2C-1790as; (SEQ ID NO: 27, 32) GUCY2C-1993s/GUCY2C-2366as; (SEQ ID NO: 28, 33) GUCY2C-2717s/GUCY2C-3200as; (SEQ ID NO: 24, 30) GUCY2C-118s/GUCY2C-1140as; (SEQ ID NO: 25, 31) GUCY2C-621s/GUCY2C-1790as; (SEQ ID NO: 26, 32) GUCY2C-1450s/GUCY2C-2366as; (SEQ ID NO: 27, 33) GUCY2C-1993s/GUCY2C-3200as.

[0293] On investigation of splice variants in colon carcinoma tissue, three previously unknown forms were identified according to the present technology.

[0294] a) A deletion of exon 3 (SEQ ID NO: 3) which leads to a variant of GUCY2C which is only 111 amino acids long and in which the asparagine at position 111 is replaced by a proline.

[0295] b) A deletion of exon 6 (SEQ ID NO: 4) which results in an expression product 258 amino acids long. This would generate a C-terminal neoepitope comprising 13 amino acids.

[0296] c) A variant in which the nucleotides at positions 1606-1614, and the corresponding amino acids L(536), L(537) and Q(538), are deleted (SEQ ID N0:5).

[0297] The splice variants according to the present technology with deletions respectively in exon 3 and exon 6 (SEQ ID NO: 3, 4) are distinguished in particular by the translation products (SEQ ID NO: 12, 13) having no transmembrane domain. The result in the case of exon 6 deletion is a C-terminal neoepitope of 13 amino acids which shows no homology whatsoever with previously known proteins. This neoepitope is thus predestined to be a target structure for immunotherapy. The splice variant of the present technology with base deletions at positions 1606-1614 (SEQ ID NO: 5) and its translation product (SEQ ID NO: 14) likewise comprises a neoepitope. Antibodies for detecting GUCY2C protein were produced by immunizing rabbits. The following peptides were used to propagate these antibodies:

TABLE-US-00006 SEQ ID NO: 100: HNGSYEISVLMMGNS (AA 31-45) SEQ ID NO: 101: NLPTPPTVENQQRLA (AA 1009-1023)

Such antibodies can in principle be used for diagnostic and therapeutic purposes.

[0298] In particular, the extracellular domain of GUCY2C (position of the predicted extracellular domain from the sequence of SEQ ID NO: 11: AA 454-1073 (SEQ ID NO: 102)) can be used according to the present technology as target structure of monoclonal antibodies. However, the structural prediction is somewhat ambiguous and not yet verified experimentally, so that an alternative membrane orientation is also conceivable. In this case, amino acids 1-431 would be outside the cell and be suitable as starting point for monoclonal antibodies. These antibodies bind specifically to the cell surface of tumor cells and can be used both for diagnostic and for therapeutic methods. Overexpression of GUCY2C, especially in the colon tumors, provides additional support for such a use. Sequences coding for proteins can moreover be used according to the present technology as vaccine (RNA, DNA, peptides, protein) for inducing tumor-specific immune responses (T-cell- and B-cell-mediated immune responses).

[0299] It is moreover possible in accordance with the cellular function of the GUCY2C molecule to develop according to the present technology substances, especially small molecules, which modulate the function of the enzyme on tumor cells. The product of the enzymic reaction, cGMP, is a known cellular signal molecule with a wide variety of functions (Tremblay et al. Mol Cell Biochem 230, 31).

Example 3

Identification of SCGB3A2 as Diagnostic and Therapeutic Cancer Target

[0300] SCGB3A2 (SEQ ID NO: 6) (translation product: SEQ ID NO: 15) belongs to the secretoglobin gene family. The sequence is published in GenBank under accession number NM 054023. SCGB3A2 (UGRP1) is a homodimeric secretory protein with a size of 17 kDa, which is expressed exclusively in the lung and in the spiracles (Niimi et al., Am J Hum Genet 70:718-25, 2002). RT PCR investigations with a primer pair (SEQ ID NO: 37, 38) confirmed selective expression in normal lung tissue. Lung- and trachea-specific genes, e.g. for surfactant proteins, are highly downregulated in malignant tumors during dedifferentiation and are normally undetectable in lung tumors. It was surprisingly found that SCGB3A2 is active in primary and metastatic lung tumors. The investigations according to the present technology showed that SCGB3A2 is strongly and frequently expressed in bronchial carcinomas (FIG. 4). All the other 23 normal tissues tested, apart from lung and trachea, show no expression (cf. FIG. 20).

[0301] This was additionally confirmed in a specific quantitative RT-PCR (SEQ ID NO: 103, 104) (FIG. 20) which additionally shows overexpression by at least one log in more than 50% of bronchial carcinomas. The selective and high expression of SCGB3A2 in normal lung tissue and in lung carcinoma biopsies can be used according to the present technology for molecular diagnostic methods such as RT-PCR for detecting disseminating tumor cells in blood and bone marrow, sputum, bronchial aspirate or lavage and for detecting metastases in other tissues, e.g. in local lymph nodes. In the healthy lung, SCGB3A2 is secreted by specialized cells exclusively into the bronchi. Accordingly, it is not to be expected that SCGB3A2 protein will be detectable in body fluids outside the respiratory tract in healthy individuals. By contrast, in particular metastatic tumor cells secrete their protein products directly into the bloodstream. One aspect of the present technology therefore relates to detection of SCGB3A2 products in serum or plasma of patients via a specific antibody assay as diagnostic finding for lung tumors.

[0302] Antibodies for detecting SCGB3A2 protein were produced by immunizing rabbits. The following peptides were used to propagate these antibodies:

TABLE-US-00007 SEQ ID NO: 105: LINKVPLPVDKLAPL SEQ ID NO: 106: SEAVKKLLEALSHLV

An SCGB3A2-specific reaction was detectable in immunofluorescence (FIG. 21). As expected for a secreted protein, the distribution of SCGB3A2 in the cell was assignable to the endoplasmic reticulum and secretion granules (FIG. 21A). To check the specificity, the cells were transfected in parallel with a plasmid that synthesizes an SCGB3A2-GFP fusion protein. Protein detection took place in this case via the autofluorescent GFP (green fluorescent protein) (FIG. 21B). Superimposition of the two fluorescence diagrams shows unambiguously that the immune serum specifically recognizes SCGB3A2 protein (FIG. 21C). Such antibodies can be used according to the present technology for example in the form of immunoassays for diagnostic and therapeutic purposes.

Example 4

Identification of Claudin-18A1 and Claudin-10 18A2 Splice Variants as Diagnostic and Therapeutic Cancer Targets

[0303] The claudin-18 gene codes for a surface membrane molecule having 4 transmembrane domains and intracellular N terminus and C terminus. Niimi and colleagues (Mol. Cell. Biol. 21:7380-90, 2001) describe two splice variants of the murine and human claudin-18 which have been described as expressed selectively in lung tissue. (claudin-18A1) and in stomach tissue (claudin-18A2), respectively. These variants differ in the N terminus (FIG. 22).

[0304] It was investigated according to the present technology how far the splice variants claudin-18A2 (SEQ ID NO: 7) and claudin-18A1 (SEQ ID NO: 117), and their respective translation products (SEQ ID NO: 16 and 118), can be used as markers or therapeutic target structures for tumors. A quantitative PCR able to distinguish between the two variants was established by selecting A1-specific (SEQ ID NO: 109 110) and A2-specific (SEQ ID NO: 107 & 108) primer pairs. The A2 splice variant was additionally tested with a second primer pair in a conventional PCR (SEQ ID NO: 39 & 40). The A1 variant is described to be active only in normal lung. However, it was surprisingly found according to the present technology that the A1 variant is also active in the gastric mucosa. Stomach and lung are the only normal tissues showing significant activation. All other normal tissues are negative for claudin-A1. On investigating tumors, it was surprisingly found that claudin-A1 is highly activated in a large number of tumor tissues. Particularly strong expression is to be found in stomach tumors, lung tumors, pancreatic carcinomas, esophageal carcinomas (FIG. 23), ENT tumors and prostate carcinomas. The claudin-A1 expression levels in ENT, prostate, pancreatic and esophageal tumors are 100-10 000 higher than the levels in the corresponding normal tissues. The oligonucleotides used to investigate the claudin-A2 splice variant specifically enable this transcript to be amplified (SEQ ID NO: 39 & 40 and 107 & 108). Investigation revealed that the A2 splice variant is expressed in none of the more than 20 normal tissues investigated apart from gastric mucosa and to a small extent also testis tissue. We have found that the A2 variant is also, like the A1 variant, activated in many tumors (depicted by way of example in FIG. 24). These include stomach tumors (8/10), pancreatic tumors (6/6), esophageal carcinomas (5/10) and liver carcinomas. Although no activation of claudin-18A2 is detectable in healthy lung, it was surprisingly found that some lung tumors express the A2.1 splice variant.

TABLE-US-00008 TABLE 3A Expression of claudin-18A2 in normal and tumor tissues. Normal tissues Expression Tumor type Expression Brain - Colon - Cerebellum - carcinoma Myocardium - Pancreatic ++ Skeletal - carcinoma muscle Esophageal ++ Endometrium - carcinoma Stomach +++ Gastric +++ Colon - carcinoma Pancreas - Bronchial ++ Kidney - carcinoma Liver - Breast - Testis + carcinoma Thymus - Ovarian - Breast - carcinoma Ovary - Endometrial n.i. Uterus - carcinoma Skin - ENT tumors ++ Lung - Renal cell - Thyroid - carcinoma Lymph nodes - Prostate - Spleen - carcinoma PBMC - Esophagus -

TABLE-US-00009 TABLE 3B Expression of claudin-18A1 in normal and tumor tissues. Normal tissues Expression Tumor type Expression Brain - Colon - Cerebellum - carcinoma Myocardium - Pancreatic ++ Skeletal - carcinoma muscle Esophageal ++ Endometrium - carcinoma Stomach +++ Gastric +++ Colon - carcinoma Pancreas - Bronchial ++ Kidney - carcinoma Liver - Breast + Testis + carcinoma Thymus - Ovarian n.i. Breast - carcinoma Ovary - Endometrial n.i. Uterus - carcinoma Skin - ENT tumors ++ Lung +++ Renal cell - Thyroid - carcinoma Lymph nodes - Prostate ++ Spleen - carcinoma PBMC - Esophagus -

[0305] Conventional PCR as independent control investigation also confirmed the results of the quantitative PCR. The oligonucleotides (SEQ ID NO: 39, 40) used for this permit specific amplification of the A2 splice variant. It was shown according to the present technology that 8/10 gastric carcinomas and half of the tested pancreatic carcinomas showed strong expression of this splice variant (FIG. 5). By contrast, expression is not detectable in other tissues by conventional PCR. In particular, there is no expression in lung, liver, blood, lymph nodes, breast tissue and kidney tissue (tab. 3).

[0306] The splice variants thus represent according to the present technology highly specific molecular markers for tumors of the upper gastrointestinal tract as well as lung tumors, ENT tumors, prostate carcinomas and metastases thereof. These molecular markers can be used according to the present technology for detecting tumor cells. Detection of the tumors is possible according to the present technology with the oligonucleotides described (SEQ ID NO: 39, 40, 107-110). Particularly suitable oligonucleotides are primer pairs of which at least one binds under stringent conditions to a segment of the transcript which is 180 base pairs long and is specific for one (SEQ ID NO: 8) or the other splice variant (SEQ ID NO: 119).

[0307] In order to confirm these data at the protein level, claudin-specific antibodies and immune sera were generated by immunizing animals. The plasma membrane localization of claudin-18 and the protein topology was confirmed by analysis of the transmembrane domains with bioinformatic tools (TMHMM, TMPRED) and immunofluorescence investigations of cells which expressed claudin-18 fusion proteins tagged with enhanced GFP. Claudin-18 has two extracellular domains. The N-terminal extracellular domain differs in sequence in the two splice variants (SEQ ID NO: 111 for A1 and SEQ ID NO: 112 for A2). The C-terminal extracellular domain is identical for both variants (SEQ ID NO: 137). To date, no antibodies which bind to the extracellular domains of claudin-18 have yet been described. According to the present technology, peptide epitopes which are located extracellularly and are specific for variant A1 or A2 or occur in both variants were selected for the immunization. Both variants of claudin-18 have no conventional glycosylation motifs and the glycosylation of the protein was therefore not to be expected. Nevertheless, account was taken in the selection of the epitopes that epitopes which comprise asparagine, serine, threonine are potentially glycosylated in rare cases even without conventional glycosylation sites. Glycosylation of an epitope may prevent the binding of an antibody specific for this epitope. Inter alia, epitopes were selected according to the present technology so that the antibodies generated thereby permit the glycosylation status of the antigen to be distinguished. The following peptides, inter alia, were selected for producing antibodies for the immunization: SEQ ID NO: 17: DQWSTQDLYN (N-terminal extracellular domain, A2-specific, binding independent of glycosylation) SEQ ID NO: 18: NNPVTAVFNYQ (N-terminal extracellular domain, A2-specific, binding mainly to unglycosylated form, N37) SEQ ID NO: 113: STQDLYNNPVTAVF (N-terminal extracellular domain, A2-specific, binding only to non-glycosylated form, N37) SEQ ID NO: 114: DMWSTQDLYDNP (N-terminal extracellular domain, A1-specific) SEQ ID NO: 115: CRPYFTILGLPA (N-terminal extracellular domain, mainly specific for A1) SEQ ID NO: 116: TNFWMSTANMYTG (C-terminal extracellular domain, recognizes both A1 and A2).

[0308] The data for the A2-specific antibody produced by immunization with SEQ ID NO: 17 are shown by way of example. The specific antibody can be utilized under various fixation conditions for immunofluorescence investigations. With comparative stainings of RT-PCR-positive and negative cell lines, in an amount which is readily detectable, the corresponding protein can be specifically detected in the gastric carcinoma cell lines typed as positive (FIG. 25). The endogenous protein is membrane-located and forms relatively large focal aggregates on the membrane. This antibody was additionally employed for protein detection in Western blotting. As expected, protein is detected only in stomach and in no other normal tissue, not even lung (FIG. 29). The comparative staining of stomach tumors and adjacent normal stomach tissue from patients surprisingly revealed that claudin-18 A2 has a smaller mass weight in all stomach tumors in which this protein is detected (FIG. 30, left). It was found according to the present technology in a series of experiments that a band also appears at this level when lysate of normal stomach tissue is treated with the deglycosylating agent PNGase F (FIG. 30, right). Whereas exclusively the glycosylated form of the A2 variant is detectable in all normal stomach tissues, A2 is detectable as such in more than 60% of the investigated gastric carcinomas, in particular exclusively in the deglycosylated form. Although the A2 variant of claudin-18 is not detected in normal lung even at the protein level, it is to be found in bronchial carcinomas, as also previously in the quantitative RT-PCR. Once again, only the deglycosylated variant is present (FIG. 31). Antibodies which recognize the extracellular domain of the claudin-18-A2 splice variant have been produced according to the present technology. In addition, antibodies which selectively recognize the N-terminal domain of the claudin-18-A1 splice variant (FIG. 28) and antibodies which bind to both variants in the region of the C-terminal extracellular domain (FIG. 27) have been produced. It is possible according to the present technology to use such antibodies for diagnostic purposes, e.g. immunohistology (FIG. 32), but also for therapeutic purposes as explained above. A further important aspect relates to differentially glycosylated domains of claudin-18. Antibodies which exclusively bind to non-glycosylated epitopes have been produced according to the present technology. Claudin-18 itself is a highly selective differentiating antigen for stomach tissue (A2) and for the lung and stomach (A1). Since it is evidently affected by changes in the glycosylation machinery in tumors, a particular, deglycosylated, variant of A2 is produced in tumors. This can be utilized diagnostically and therapeutically. Immune sera such as the one described here (against peptide of SEQ ID NO:17) can be utilized diagnostically for example in Western blotting. Antibodies which are entirely unable to bind to the glycosylated epitope as obtained for example by immunization with peptide of SEQ ID NO:113 (FIG. 26), can distinguish tumor tissue from normal tissue in the binding. It is possible in particular to employ such antibodies therapeutically because they are highly selective. The produced antibodies can be used directly also for producing chimeric or humanized recombinant antibodies. This can also take place directly with antibodies obtained from rabbits (concerning this, see J Biol Chem. 2000 May 5; 275(18):13668-76 by Rader C, Ritter G, Nathan S, Elia M, Gout I, Jungbluth A A, Cohen L S, Welt S, Old L J, Barbas C F 3rd. "The rabbit antibody repertoire as a novel source for the generation of therapeutic human antibodies"). For this purpose, lymphocytes from the immunized animals were preserved. The amino acids 1-47 (SEQ ID NO: 19 and 120) also represent particularly good epitopes for immunotherapeutic methods such as vaccines and the adoptive transfer of antigen-specific T lymphocytes.

Example 5

Identification of SLC13A1 as Diagnostic and Therapeutic Cancer Target

[0309] SLC13A1 belongs to the family of sodium sulfate cotransporters. The human gene is, in contrast to the mouse homolog of this gene, selectively expressed in the kidney (Lee et al., Genomics 70:354-63). SLC13A1 codes for a protein of 595 amino acids and comprises 13 putative transmembrane domains. Alternative splicing results in 4 different transcripts (SEQ ID NO: 41-44) and its corresponding translation products (SEQ ID NO: 45-48). It was investigated whether SLC13A1 can be used as marker for kidney tumors. Oligonucleotides (SEQ ID NO: 49, 50) which enable specific amplification of SLC13A1 were used for this purpose.

TABLE-US-00010 TABLE 4 Expression of SLC13A1 in normal and tumor tissues Normal tissues Expression Tumor type Expression Brain - Colon nd Cerebellum nd carcinoma Myocardium nd Pancreatic nd Skeletal nd carcinoma muscle Esophageal nd Mycardium - carcinoma Stomach - Gastric nd Colon - carcinoma Pancreas nd Bronchial nd Kidney +++ carcinoma Liver - Breast nd Testis + carcinoma Thymus - Ovarian nd Breast - carcinoma Ovary - Endometrial nd Uterus nd carcinoma Skin nd ENT tumors nd Lung - Renal cell +++ Thyroid - carcinoma Lymph nodes - Prostate nd Spleen - carcinoma PBMC - Sigmoid - Esophagus -

[0310] RT-PCR investigations with an SLC13A1-specific primer pair (SEQ ID NO: 49, 50) confirmed virtually selective expression in the kidney, and showed according to the present technology a high expression in virtually all (7/8) investigated renal cell carcinoma biopsies (tab. 4, FIG. 6). Quantitative RT-PCR with specific primers (SEQ ID NO: 121, 122) also confirmed these data (FIG. 34). Weak signals were detectable in the following normal tissues: colon, stomach, testis, breast, liver and brain. Expression in renal carcinomas was, however, at least 100 times higher than in all other normal tissues.

[0311] In order to analyse the subcellular localization of SLC13A1 in the cell, the protein was fused to eGFP as reporter molecule and, after transfection of the appropriate plasmid, expressed heterologously in 293 cells. The localization was then analysed under the fluorescence microscope. Our data impressively confirmed that SLC13A1 is an integral transmembrane molecule (FIG. 35).

[0312] Antibodies for detecting the SLC13A1 protein were produced by immunizing rabbits. The peptides of SEQ ID NO: 123 and 124 were used for propagating these antibodies. Such antibodies can in principle be used for diagnostic and therapeutic purposes. The SLC13A1 protein has 13 transmembrane domains and 7 extracellular regions. These extracellular domains of SLC13A1 in particular can be used according to the present technology as target structures for monoclonal antibodies. SLC13A1 is involved as channel protein in the transport of ions. The extracellular domains of SLC13A1 in the healthy kidney are directed polarically in the direction of the urinary tract (luminally). However, high molecular weight monoclonal antibodies employed therapeutically are not excreted into the urinary tract, so that no binding to SLC13A1 takes place in the healthy kidney. By contrast, the polarity of SLC13A1 is abolished in tumor cells, and the protein is available for antibody targeting directly via the bloodstream. The pronounced expression and high incidence of SLC13A1 in renal cell carcinomas make this protein according to the present technology a highly interesting diagnostic and therapeutic marker. This includes according to the present technology the detection of disseminated tumor cells in serum, bone marrow, urine, and detection of metastases in other organs by means of RT-PCR. It is additionally possible to use the extracellular domains of SLC13A1 according to the present technology as target structure for immunodiagnosis and therapy by means of monoclonal antibodies. SLC13A1 can moreover be employed according to the present technology as vaccine (RNA, DNA, protein, peptides) for inducing tumor-specific immune responses (T and B cell-mediated immune responses). This includes according to the present technology also the development of so-called small compounds which modulate the biological activity of SLC13A1 and can be employed for the therapy of renal tumors.

Example 6

Identification of CLCA1 as Diagnostic and Therapeutic Cancer Target

[0313] CLCA1 (SEQ ID NO: 51; translation product: SEQ ID NO: 60) belongs to the family of Ca⁺+-activated CL channels. The sequence is published in Genbank under the accession No. NM 001285. CLCA1 is exclusively expressed in the intestinal crypt epithelium and in the goblet cells (Gruber et al., Genomics 54:200-14, 1998). It was investigated whether CLCA1 can be used as marker for colonic and gastric carcinoma. Oligonucleotides (SEQ ID NO: 67, 68) which enable specific amplification of CLCA1 were used for this purpose. RT-ECR investigations with this primer set confirmed selective expression in the colon, and showed according to the present technology high expression in (3/7) investigated colonic and (1/3) investigated gastric carcinoma samples (FIG. 7). The other normal tissues showed no or only very weak expression. This was additionally confirmed with a specific quantitative RT-PCR (SEQ ID NO: 125, 126), in which case no expression could be detected in the normal tissues analyzed (FIG. 36). Of the tumor samples investigated in this experiment, 6/12 colonic carcinoma samples and 5/10 gastric carcinoma samples were positive for CLCA1. Overall, expression of the gene in tumors appears to be dysregulated. Besides samples with very strong expression, CLCA1 was markedly downregulated in other samples.

[0314] The protein is predicted to have 4 transmembrane domains with a total of 2 extracellular regions. These extracellular domains of CLCA1 in particular can be used according to the present technology as target structures for monoclonal antibodies.

[0315] The pronounced expression and high incidence of CLCA1 in gastric and colonic carcinomas make this protein according to the present technology an interesting diagnostic and therapeutic marker. This includes according to the present technology the detection of disseminated tumor cells in serum, bone marrow, urine, and detection of metastases in other organs by means of RT-PCR. It is additionally possible to use the extracellular domains of CLCA1 according to the present technology as target structure for immunodiagnosis and therapy by means of monoclonal antibodies. CLCA1 can moreover be employed according to the present technology as vaccine (RNA, DNA, protein, peptides) for inducing tumor-specific immune responses (T and B cell-mediated immune responses). This includes according to the present technology also the development of so-called small compounds which modulate the biological activity as transport proteins of CLCA1 and can be employed for the therapy of gastrointestinal tumors.

Example 7

Identification of FLJ21477 as Diagnostic and Therapeutic Cancer Target

[0316] FLJ21477 (SEQ ID NO: 52) and its predicted translation product (SEQ ID NO: 61) was published as hypothetical protein in Genbank under the accession No. NM_--025153. It is an integral membrane protein having ATPase activity and 4 transmembrane domains, which is accordingly suitable for therapy with specific antibodies. RT-PCR investigations with FLJ21477-specific primers (SEQ ID NO: 69, 70) showed selective expression in the colon, and additionally various levels of expression in (7/12) investigated colonic carcinoma samples (FIG. 8). The other normal tissues showed no expression. This was confirmed additionally by a specific quantitative RT-PCR (SEQ ID NO: 127, 128). FLJ21477-specific expression was detectable both in colon (FIG. 37A) and in 11/12 of colonic carcinomas. Besides the expression in colon tissue, expression was additionally detectable in stomach tissue. In addition, under the conditions of the quantitative RT-PCR, the expression detectable in brain, thymus and esophagus was distinctly weaker compared with colon and stomach (FIG. 37A). It was moreover additionally possible to detect FLJ21477-specific expression in the following tumor samples: stomach, pancreas, esophagus and liver. The protein is predicted to have 4 transmembrane domains with a total of 2 extracellular regions. These extracellular domains of FLJ21477 in particular can be used according to the present technology as' target structures for monoclonal antibodies.

[0317] The expression and the high incidence of FLJ21477 for gastric and colonic carcinomas make this protein according to the present technology a valuable diagnostic and therapeutic marker. This includes according to the present technology the detection of disseminated tumor cells in serum, bone marrow, urine, and the detection of metastases in other organs by means of RT-PCR. In addition, the extracellular domains of FLJ21477 can be used according to the present technology as target structure for immunodiagnosis and therapy by means of monoclonal antibodies. In addition, FLJ21477 can be employed according to the present technology as vaccine (RNA, DNA, protein, peptides) for inducing tumor-specific immune responses (T and B cell-mediated immune responses).

Example 8

Identification of FLJ20694 as Diagnostic and Therapeutic Cancer Target

[0318] FLJ20694 (SEQ ID NO: 53) and its translation product (SEQ ID NO: 62) were published as hypothetical protein in Genbank under accession No. NM_--017928. This protein is an integral transmembrane molecule (transmembrane domain AA 33-54), very probably with thioredoxin function. RT-PCR investigations with FLJ20694-specific primers (SEQ ID NO: 71, 72) showed selective expression in the colon, and additionally various levels of expression in (5/9) investigated colonic carcinoma samples (FIG. 9). The other normal tissues showed no expression. This was additionally confirmed by a specific quantitative RT-PCR (SEQ ID NO: 129, 130) (FIG. 38). FLJ29694 expression was undetectable in any other normal tissue apart from colon and stomach (not analysed in the first experiment).

[0319] The protein is predicted to have one transmembrane domain with an extracellular region. These extracellular domains of FLJ20694 in particular can be used according to the present technology as target structures for monoclonal antibodies.

[0320] In addition, FLJ20694 can be employed according to the present technology as vaccine (RNA, DNA, protein, peptides) for inducing tumor-specific immune responses (T and B cell-mediated immune responses). This includes according to the present technology also the development of so-called small compounds which modulate the biological activity of FLJ20694 and can be employed for the therapy of gastrointestinal tumors.

Example 9

Identification of Von Ebner's Protein (c20orfll4) as Diagnostic and Therapeutic Cancer Target

[0321] von Ebner's protein (SEQ ID N0:54) and its translation product (SEQ ID NO: 63) were published as Plunc-related protein of the upper airways and of the nasopharyngeal epithelium in Genbank under the accession No. AF364078. It was investigated according to the present technology whether von Ebner's protein can be used as marker of lung carcinoma. Oligonucleotides (SEQ ID NO: 73, 74) which enable specific amplification of Ebner's protein were used for this purpose. RT-PCR investigations with this primer set showed selective expression in the lung and in (5/10) investigated lung carcinoma samples (FIG. 10). In the group of normal tissues there was also expression in the stomach. The other normal tissues showed no expression.

Example 10

Identification of Plunc as Diagnostic and Therapeutic Cancer Target

[0322] Plunc (SEQ ID NO: 55) and its translation product (SEQ ID NO: 64) were published in Genbank under the accession No. NM_--016583. Human Plunc codes for a protein of 256 amino acids and shows 72% homology with the murine Plunc protein (Single and Single, Biochem Biophys Acta 1493:363-7, 2000). Expression of Plunc is confined to the trachea, the upper airways, nasopharyngeal epithelium and salivary gland.

[0323] It was investigated according to the present technology whether Plunc can be used as marker of lung carcinoma. Oligonucleotides (SEQ ID NO: 75, 76) which enable specific amplification of Plunc were used for this purpose.

[0324] RT-PCR investigations with this primer set showed selective expression in the thymus, in the lung and in (6/10) investigated lung carcinoma samples (FIG. 11). Other normal tissues showed no expression.

Example 11

Identification of SLC26A9 as diagnostic and therapeutic

[0325] cancer target

[0326] SLC26A9 (SEQ ID NO: 56) and its translation product (SEQ ID NO: 65) were published in Genbank under the accession No. NM_--134325. SLC26A9 belongs to the family of anion exchangers. Expression of SLC26A9 is confined to the bronchiolar and alveolar epithelium of the lung (Lohi et al., J Biol Chem 277:14246-54, 2002).

[0327] It was investigated whether SLC26A9 can be used as marker of lung carcinoma. Oligonucleotides (SEQ ID NO: 77, 78) which enable specific amplification of SLC26A9 were used for this purpose. RT-PCR investigations with SLC26A9-specific primers (SEQ ID NO: 77, 78) showed selective expression in the lung and in all (13/13) investigated lung carcinoma samples (FIG. 12). The other normal tissues showed no expression, with the exception of the thyroid. It was possible in quantitative RT-PCR experiments with the primers of SEQ ID NO: 131 and 132 firstly to confirm these results, and to obtain additional information. It was possible in pooled samples of 4-5 tumor tissues to detect high expression levels for SLC26A9-specific RNA in lung, colon, pancreas and stomach tumors. SLC26A9 is member of a family of transmembrane anion transporters. In the healthy lung, the protein is luminally directed in the direction of the airways and thus not directly available to IgG antibodies from the blood. By contrast, the polarity of the protein is abolished in tumors. It is therefore possible according to the present technology to address SLC26A9 as therapeutic target using monoclonal antibodies in the defined tumors, inter alia lung tumors, gastric carcinomas, pancreatic carcinomas. The pronounced, high expression and high incidence of SLC26A9 for lung, stomach, pancreatic and esophageal carcinomas make this protein according to the present technology an excellent diagnostic and therapeutic marker. This includes according to the present technology the detection of disseminated tumor cells in serum, bone marrow and urine, and detection of metastases in other organs by means of RT-PCR. In addition, the extracellular domains of SLC26A9 can be used according to the present technology as target structure for immunodiagnosis and therapy by means of monoclonal antibodies. It is additionally possible to employ SLC26A9 according to the present technology as vaccine (RNA, DNA, protein, peptides) for inducing tumor-specific immune responses (T and B cell-mediated immune responses). This includes according to the present technology also the development of so-called small compounds which modulate the biological activity of SLC26A9 and can be employed for the therapy of lung tumors and gastrointestinal tumors.

Example 12

Identification of THC1005163 as Diagnostic and Therapeutic Cancer Target

[0328] THC1005163 (SEQ ID NO: 57) is a gene fragment from the TIGR gene index. The gene is defined only in the 3' region, while an ORF is lacking RT-PCR investigations took place with a THC1005163-specific primer (SEQ ID NO: 79) and an oligo dT₁₈ primer which had a specific tag of 21 specific bases at the 5' end. This tag was examined using database search programs for homology with known sequences. This specific primer was initially employed in the cDNA synthesis in order to preclude genomic DNA contaminations. RT-PCR investigations with this primer set showed expression in the stomach, ovary, lung and in (5/9) lung carcinoma biopsies (FIG. 13). Other normal tissues showed no expression.

Example 13

Identification of LOC134288 as Diagnostic and Therapeutic Cancer Target

[0329] LOC134288 (SEQ ID NO: 58) and its predicted translation product (SEQ ID NO: 66) were published in Genbank under accession No. XM_--059703.

[0330] It was investigated according to the present technology whether LOC134288 can be used as marker of renal cell carcinoma. Oligonucleotides (SEQ ID NO: 80, 81) which enable specific amplification of LOC134288 were used for this purpose. RT-PCR investigations showed selective expression in the kidney and in (5/8) investigated renal cell carcinoma biopsies (FIG. 14).

Example 14

Identification of THC943866 as Diagnostic and Therapeutic Cancer Target

[0331] THC 943866 (SEQ ID NO: 59) is a gene fragment from the TIGR gene index. It was investigated whether THC943866 can be used as marker of renal cell carcinoma. Oligonucleotides (SEQ ID NO: 82, 83) which enable specific amplification of THC943866 were used for this purpose.

[0332] RT-PCR investigations with THC943866-specific primers (SEQ ID NO: 82, 83) showed selective expression in the kidney and in (4/8) investigated renal cell carcinoma biopsies (FIG. 15).

Example 15

Identification of FLJ21458 as Diagnostic and Therapeutic Cancer Target

[0333] FLJ21458 (SEQ ID NO: 84) and its predicted translation product (SEQ ID NO: 85) were published in Genbank under the accession No. NM_--034850. Sequence analyses revealed that the protein represents a new member of the butyrophillin family. Structural analyses revealed that it represents a type 1 transmembrane protein with an extracellular immunoglobulin domain. Oligonucleotides (SEQ ID NO: 86, 87) which enable specific amplification of FLJ21458 were used for investigating expression. RT-PCR investigations with FLJ21458-specific primers (SEQ ID NO: 86, 87) showed selective expression in colon and in (7/10) investigated colonic carcinoma biopsies (FIG. 16, tab. 5). Quantitative RT-PCR with specific primers (SEQ ID NO: 133, 134) confirmed this selective expression profile (FIG. 39). It was additionally possible in the experiment to detect FLJ21458 gastrointestinal-specifically in the colon, and in stomach, in the rectum and cecum and in testis. 7/11 colon metastasis samples were also positive in the quantitative PCR. FLJ21458-specific expression was extended to other tumors, and a protein-specific expression was detectable in stomach, pancreas and liver tumors (tab. 5). Antibodies for detecting FLJ21458 protein were produced by immunizing rabbits. The following peptides were used to propagate these antibodies:

TABLE-US-00011 SEQ ID NO: 135: QWQVFGPDKPVQAL SEQ ID NO: 136: AKWKGPQGQDLSTDS

An FLJ21458-specific reaction was detectable in immuno-fluorescence (FIG. 40). To check the specificity of the antibodies, 293 cells were transfected with a plasmid that codes for an FLJ21458-GFP fusion protein. Specificity was demonstrated on the one hand by colocalization investigations using the FLJ21458-specific antibody, and on the other hand via the auto-fluorescent GFP. Superimposition of the two fluorescent diagrams showed unambiguously that the immune serum specifically recognises FLJ21458 protein (FIG. 40a). Owing to the overexpression of the protein, the resultant cell staining was diffuse and did not allow unambiguous protein localization. For this reason, a further immunofluorescence experiment was carried out with the stomach tumor-specific cell line Snu16 which expresses FLJ21458 endogenously (FIG. 4IB). The cells were stained with the FLJ21458-specific antiserum and with another antibody which recognizes the membrane protein E-cadherin. The FLJ21458-specific antibody stains the cell membranes at least weakly and is thus evidence that FLF21458 is localized in the cell membrane.

[0334] Bioinformatic investigations showed that the protein encoded by FLJ21458 represents a cell surface molecule and has an immunoglobulin supermolecule domain. Selective expression of this surface molecule makes it a good target for developing diagnostic methods for the detection of tumor cells and therapeutic methods for the elimination of tumor cells.

[0335] The pronounced expression and high incidence of FLJ21458 for gastric and colonic carcinomas make this protein according to the present technology a highly interesting diagnostic and therapeutic marker. This includes according to the present technology the detection of disseminated tumor cells in serum, bone marrow and urine, and the detection of metastases in other organs by means of RT-PCR. It is additionally possible to employ the extracellular domains of FLJ21458 according to the present technology as target structure for immuno-diagnosis and therapy by means of monoclonal antibodies. It is additionally possible to employ FLJ21458 according to the present technology as vaccine (RNA, DNA, protein, peptides) for inducing tumor-specific immune responses (T and B cell-mediated immune responses). This includes according to the present technology also the development of so-called small compounds which modulate the biological activity of FLJ21458 and can be employed for the therapy of gastrointestinal tumors.

TABLE-US-00012 TABLE 5 FLJ21458 expression in normal and tumor tissues Normal tissues Expression Tumor type Expression Brain - Colonic 7/10 Cerebellum - carcinoma Myocardium nd Pancreatic 5/6 Skeletel - carcinoma muscle Esophageal nd Mycardium - carcinoma Stomach ++ Gastric 8/10 Colon +++ carcinoma Pancreas - Bronchial nd Kidney - carcinoma Liver - Breast nd Testis ++ carcinoma Thymus nd Ovarian nd Breast nd carcinoma Ovary - Endometrial nd Uterus - carcinoma Skin - ENT tumors nd Lung - Renal cell nd Thyroid nd carcinoma Lymph nodes - Prostate nd Spleen - carcinoma PBMC - Colonic 7/11 Adrenal nd metastases Esophagus - Liver 5/8 Small intestine - carcinoma Prostate -

Sequence CWU 1

1

14111875DNAHomo Sapiens 1caggccagag tcccagctgt cctggactct gctgtgggga agggctgatg caggtgtgga 60gtcaaatgtg ggtgcctcct gcagccgggt gccaggaggg gtggaggggc caccctgggc 120tttgtccggg agcctggtct tcccgtcctt gggctgacag gtgctgctgc ctctgagccc 180tccctgctaa gagctgtgtg ctgggtaagg ctggtggccc tttgggctcc ctgtccagga 240tttgtgctct ggagggtagg gcttgctggg ctggggactg gaggggaacg tggagctcct 300tctgcctcct ttcctgcccc atgacagcag gcagatccca ggagagaaga gctcaggaga 360tgggaagagg atctgtccag gggttagacc tcaagggtga cttggagttc tttacggcac 420ccatgctttc tttgaggagt tttgtgtttg tgggtgtggg gtcggggctc acctcctccc 480acatccctgc ccagaggtgg gcagagtggg ggcagtgcct tgctccccct gctcgctctc 540tgctgacctc cggctccctg tgctgcccca ggaccatgaa tggcacctac aacacctgtg 600gctccagcga cctcacctgg cccccagcga tcaagctggg cttctacgcc tacttgggcg 660tcctgctggt gctaggcctg ctgctcaaca gcctggcgct ctgggtgttc tgctgccgca 720tgcagcagtg gacggagacc cgcatctaca tgaccaacct ggcggtggcc gacctctgcc 780tgctgtgcac cttgcccttc gtgctgcact ccctgcgaga cacctcagac acgccgctgt 840gccagctctc ccagggcatc tacctgacca acaggtacat gagcatcagc ctggtcacgg 900ccatcgccgt ggaccgctat gtggccgtgc ggcacccgct gcgtgcccgc gggctgcggt 960cccccaggca ggctgcggcc gtgtgcgcgg tcctctgggt gctggtcatc ggctccctgg 1020tggctcgctg gctcctgggg attcaggagg gcggcttctg cttcaggagc acccggcaca 1080atttcaactc catggcgttc ccgctgctgg gattctacct gcccctggcc gtggtggtct 1140tctgctccct gaaggtggtg actgccctgg cccagaggcc acccaccgac gtggggcagg 1200cagaggccac ccgcaaggct gcccgcatgg tctgggccaa cctcctggtg ttcgtggtct 1260gcttcctgcc cctgcacgtg gggctgacag tgcgcctcgc agtgggctgg aacgcctgtg 1320ccctcctgga gacgatccgt cgcgccctgt acataaccag caagctctca gatgccaact 1380gctgcctgga cgccatctgc tactactaca tggccaagga gttccaggag gcgtctgcac 1440tggccgtggc tcccagtgct aaggcccaca aaagccagga ctctctgtgc gtgaccctcg 1500cctaagaggc gtgctgtggg cgctgtgggc caggtctcgg gggctccggg aggtgctgcc 1560tgccagggga agctggaacc agtagcaagg agcccgggat cagccctgaa ctcactgtgt 1620attctcttgg agccttgggt gggcagggac ggcccaggta cctgctctct tgggaagaga 1680gagggacagg gacaagggca agaggactga ggccagagca aggccaatgt cagagacccc 1740cgggatgggg cctcacactt gccaccccca gaaccagctc acctggccag agtgggttcc 1800tgctggccag ggtgcagcct tgatgacacc tgccgctgcc cctcggggct ggaataaaac 1860tccccaccca gagtc 187523222DNAHomo Sapiens 2atgaagacgt tgctgttgga cttggctttg tggtcactgc tcttccagcc cgggtggctg 60tcctttagtt cccaggtgag tcagaactgc cacaatggca gctatgaaat cagcgtcctg 120atgatgggca actcagcctt tgcagagccc ctgaaaaact tggaagatgc ggtgaatgag 180gggctggaaa tagtgagagg acgtctgcaa aatgctggcc taaatgtgac tgtgaacgct 240actttcatgt attcggatgg tctgattcat aactcaggcg actgccggag tagcacctgt 300gaaggcctcg acctactcag gaaaatttca aatgcacaac ggatgggctg tgtcctcata 360gggccctcat gtacatactc caccttccag atgtaccttg acacagaatt gagctacccc 420atgatctcag ctggaagttt tggattgtca tgtgactata aagaaacctt aaccaggctg 480atgtctccag ctagaaagtt gatgtacttc ttggttaact tttggaaaac caacgatctg 540cccttcaaaa cttattcctg gagcacttcg tatgtttaca agaatggtac agaaactgag 600gactgtttct ggtaccttaa tgctctggag gctagcgttt cctatttctc ccacgaactc 660ggctttaagg tggtgttaag acaagataag gagtttcagg atatcttaat ggaccacaac 720aggaaaagca atgtgattat tatgtgtggt ggtccagagt tcctctacaa gctgaagggt 780gaccgagcag tggctgaaga cattgtcatt attctagtgg atcttttcaa tgaccagtac 840ttggaggaca atgtcacagc ccctgactat atgaaaaatg tccttgttct gacgctgtct 900cctgggaatt cccttctaaa tagctctttc tccaggaatc tatcaccaac aaaacgagac 960tttgctcttg cctatttgaa tggaatcctg ctctttggac atatgctgaa gatatttctt 1020gaaaatggag aaaatattac cacccccaaa tttgctcatg ctttcaggaa tctcactttt 1080gaagggtatg acggtccagt gaccttggat gactgggggg atgttgacag taccatggtg 1140cttctgtata cctctgtgga caccaagaaa tacaaggttc ttttgaccta tgatacccac 1200gtaaataaga cctatcctgt ggatatgagc cccacattca cttggaagaa ctctaaactt 1260cctaatgata ttacaggccg gggccctcag atcctgatga ttgcagtctt caccctcact 1320ggagctgtgg tgctgctcct gctcgtcgct ctcctgatgc tcagaaaata tagaaaagat 1380tatgaacttc gtcagaaaaa atggtcccac attcctcctg aaaatatctt tcctctggag 1440accaatgaga ccaatcatgt tagcctcaag atcgatgatg acaaaagacg agatacaatc 1500cagagactac gacagtgcaa atacgacaaa aagcgagtga ttctcaaaga tctcaagcac 1560aatgatggta atttcactga aaaacagaag atagaattga acaagttgct tcagattgac 1620tattacaacc tgaccaagtt ctacggcaca gtgaaacttg ataccatgat cttcggggtg 1680atagaatact gtgagagagg atccctccgg gaagttttaa atgacacaat ttcctaccct 1740gatggcacat tcatggattg ggagtttaag atctctgtct tgtatgacat tgctaaggga 1800atgtcatatc tgcactccag taagacagaa gtccatggtc gtctgaaatc taccaactgc 1860gtagtggaca gtagaatggt ggtgaagatc actgattttg gctgcaattc cattttacct 1920ccaaaaaagg acctgtggac agctccagag cacctccgcc aagccaacat ctctcagaaa 1980ggagatgtgt acagctatgg gatcatcgca caggagatca ttctgcggaa agaaaccttc 2040tacactttga gctgtcggga ccggaatgag aagattttca gagtggaaaa ttccaatgga 2100atgaaaccct tccgcccaga tttattcttg gaaacagcag aggaaaaaga gctagaagtg 2160tacctacttg taaaaaactg ttgggaggaa gatccagaaa agagaccaga tttcaaaaaa 2220attgagacta cacttgccaa gatatttgga ctttttcatg accaaaaaaa tgaaagctat 2280atggatacct tgatccgacg tctacagcta tattctcgaa acctggaaca tctggtagag 2340gaaaggacac agctgtacaa ggcagagagg gacagggctg acagacttaa ctttatgttg 2400cttccaaggc tagtggtaaa gtctctgaag gagaaaggct ttgtggagcc ggaactatat 2460gaggaagtta caatctactt cagtgacatt gtaggtttca ctactatctg caaatacagc 2520acccccatgg aagtggtgga catgcttaat gacatctata agagttttga ccacattgtt 2580gatcatcatg atgtctacaa ggtggaaacc atcggtgatg cgtacatggt ggctagtggt 2640ttgcctaaga gaaatggcaa tcggcatgca atagacattg ccaagatggc cttggaaatc 2700ctcagcttca tggggacctt tgagctggag catcttcctg gcctcccaat atggattcgc 2760attggagttc actctggtcc ctgtgctgct ggagttgtgg gaatcaagat gcctcgttat 2820tgtctatttg gagatacggt caacacagcc tctaggatgg aatccactgg cctccctttg 2880agaattcacg tgagtggctc caccatagcc atcctgaaga gaactgagtg ccagttcctt 2940tatgaagtga gaggagaaac atacttaaag ggaagaggaa atgagactac ctactggctg 3000actgggatga aggaccagaa attcaacctg ccaacccctc ctactgtgga gaatcaacag 3060cgtttgcaag cagaattttc agacatgatt gccaactctt tacagaaaag acaggcagca 3120gggataagaa gccaaaaacc cagacgggta gccagctata aaaaaggcac tctggaatac 3180ttgcagctga ataccacaga caaggagagc acctattttt aa 32223336DNAHomo Sapiens 3atgaagacgt tgctgttgga cttggctttg tggtcactgc tcttccagcc cgggtggctg 60tcctttagtt cccaggtgag tcagaactgc cacaatggca gctatgaaat cagcgtcctg 120atgatgggca actcagcctt tgcagagccc ctgaaaaact tggaagatgc ggtgaatgag 180gggctggaaa tagtgagagg acgtctgcaa aatgctggcc taaatgtgac tgtgaacgct 240actttcatgt attcggatgg tctgattcat aactcaggcg actgccggag tagcacctgt 300gaaggcctcg acctactcag gaaaatttca ccttga 3364777DNAHomo Sapiens 4atgaagacgt tgctgttgga cttggctttg tggtcactgc tcttccagcc cgggtggctg 60tcctttagtt cccaggtgag tcagaactgc cacaatggca gctatgaaat cagcgtcctg 120atgatgggca actcagcctt tgcagagccc ctgaaaaact tggaagatgc ggtgaatgag 180gggctggaaa tagtgagagg acgtctgcaa aatgctggcc taaatgtgac tgtgaacgct 240actttcatgt attcggatgg tctgattcat aactcaggcg actgccggag tagcacctgt 300gaaggcctcg acctactcag gaaaatttca aatgcacaac ggatgggctg tgtcctcata 360gggccctcat gtacatactc caccttccag atgtaccttg acacagaatt gagctacccc 420atgatctcag ctggaagttt tggattgtca tgtgactata aagaaacctt aaccaggctg 480atgtctccag ctagaaagtt gatgtacttc ttggttaact tttggaaaac caacgatctg 540cccttcaaaa cttattcctg gagcacttcg tatgtttaca agaatggtac agaaactgag 600gactgtttct ggtaccttaa tgctctggag gctagcgttt cctatttctc ccacgaactc 660ggctttaagg tggtgttaag acaagataag gagtttcagg atatcttaat ggaccacaac 720aggaaaagca atgtgaccag tacttggagg acaatgtcac agcccctgac tatatga 77753213DNAHomo Sapiens 5atgaagacgt tgctgttgga cttggctttg tggtcactgc tcttccagcc cgggtggctg 60tcctttagtt cccaggtgag tcagaactgc cacaatggca gctatgaaat cagcgtcctg 120atgatgggca actcagcctt tgcagagccc ctgaaaaact tggaagatgc ggtgaatgag 180gggctggaaa tagtgagagg acgtctgcaa aatgctggcc taaatgtgac tgtgaacgct 240actttcatgt attcggatgg tctgattcat aactcaggcg actgccggag tagcacctgt 300gaaggcctcg acctactcag gaaaatttca aatgcacaac ggatgggctg tgtcctcata 360gggccctcat gtacatactc caccttccag atgtaccttg acacagaatt gagctacccc 420atgatctcag ctggaagttt tggattgtca tgtgactata aagaaacctt aaccaggctg 480atgtctccag ctagaaagtt gatgtacttc ttggttaact tttggaaaac caacgatctg 540cccttcaaaa cttattcctg gagcacttcg tatgtttaca agaatggtac agaaactgag 600gactgtttct ggtaccttaa tgctctggag gctagcgttt cctatttctc ccacgaactc 660ggctttaagg tggtgttaag acaagataag gagtttcagg atatcttaat ggaccacaac 720aggaaaagca atgtgattat tatgtgtggt ggtccagagt tcctctacaa gctgaagggt 780gaccgagcag tggctgaaga cattgtcatt attctagtgg atcttttcaa tgaccagtac 840ttggaggaca atgtcacagc ccctgactat atgaaaaatg tccttgttct gacgctgtct 900cctgggaatt cccttctaaa tagctctttc tccaggaatc tatcaccaac aaaacgagac 960tttgctcttg cctatttgaa tggaatcctg ctctttggac atatgctgaa gatatttctt 1020gaaaatggag aaaatattac cacccccaaa tttgctcatg ctttcaggaa tctcactttt 1080gaagggtatg acggtccagt gaccttggat gactgggggg atgttgacag taccatggtg 1140cttctgtata cctctgtgga caccaagaaa tacaaggttc ttttgaccta tgatacccac 1200gtaaataaga cctatcctgt ggatatgagc cccacattca cttggaagaa ctctaaactt 1260cctaatgata ttacaggccg gggccctcag atcctgatga ttgcagtctt caccctcact 1320ggagctgtgg tgctgctcct gctcgtcgct ctcctgatgc tcagaaaata tagaaaagat 1380tatgaacttc gtcagaaaaa atggtcccac attcctcctg aaaatatctt tcctctggag 1440accaatgaga ccaatcatgt tagcctcaag atcgatgatg acaaaagacg agatacaatc 1500cagagactac gacagtgcaa atacgacaaa aagcgagtga ttctcaaaga tctcaagcac 1560aatgatggta atttcactga aaaacagaag atagaattga acaagattga ctattacaac 1620ctgaccaagt tctacggcac agtgaaactt gataccatga tcttcggggt gatagaatac 1680tgtgagagag gatccctccg ggaagtttta aatgacacaa tttcctaccc tgatggcaca 1740ttcatggatt gggagtttaa gatctctgtc ttgtatgaca ttgctaaggg aatgtcatat 1800ctgcactcca gtaagacaga agtccatggt cgtctgaaat ctaccaactg cgtagtggac 1860agtagaatgg tggtgaagat cactgatttt ggctgcaatt ccattttacc tccaaaaaag 1920gacctgtgga cagctccaga gcacctccgc caagccaaca tctctcagaa aggagatgtg 1980tacagctatg ggatcatcgc acaggagatc attctgcgga aagaaacctt ctacactttg 2040agctgtcggg accggaatga gaagattttc agagtggaaa attccaatgg aatgaaaccc 2100ttccgcccag atttattctt ggaaacagca gaggaaaaag agctagaagt gtacctactt 2160gtaaaaaact gttgggagga agatccagaa aagagaccag atttcaaaaa aattgagact 2220acacttgcca agatatttgg actttttcat gaccaaaaaa atgaaagcta tatggatacc 2280ttgatccgac gtctacagct atattctcga aacctggaac atctggtaga ggaaaggaca 2340cagctgtaca aggcagagag ggacagggct gacagactta actttatgtt gcttccaagg 2400ctagtggtaa agtctctgaa ggagaaaggc tttgtggagc cggaactata tgaggaagtt 2460acaatctact tcagtgacat tgtaggtttc actactatct gcaaatacag cacccccatg 2520gaagtggtgg acatgcttaa tgacatctat aagagttttg accacattgt tgatcatcat 2580gatgtctaca aggtggaaac catcggtgat gcgtacatgg tggctagtgg tttgcctaag 2640agaaatggca atcggcatgc aatagacatt gccaagatgg ccttggaaat cctcagcttc 2700atggggacct ttgagctgga gcatcttcct ggcctcccaa tatggattcg cattggagtt 2760cactctggtc cctgtgctgc tggagttgtg ggaatcaaga tgcctcgtta ttgtctattt 2820ggagatacgg tcaacacagc ctctaggatg gaatccactg gcctcccttt gagaattcac 2880gtgagtggct ccaccatagc catcctgaag agaactgagt gccagttcct ttatgaagtg 2940agaggagaaa catacttaaa gggaagagga aatgagacta cctactggct gactgggatg 3000aaggaccaga aattcaacct gccaacccct cctactgtgg agaatcaaca gcgtttgcaa 3060gcagaatttt cagacatgat tgccaactct ttacagaaaa gacaggcagc agggataaga 3120agccaaaaac ccagacgggt agccagctat aaaaaaggca ctctggaata cttgcagctg 3180aataccacag acaaggagag cacctatttt taa 32136550DNAHomo Sapiens 6ggggacactt tgtatggcaa gtggaaccac tggcttggtg gattttgcta gatttttctg 60atttttaaac tcctgaaaaa tatcccagat aactgtcatg aagctggtaa ctatcttcct 120gctggtgacc atcagccttt gtagttactc tgctactgcc ttcctcatca acaaagtgcc 180ccttcctgtt gacaagttgg cacctttacc tctggacaac attcttccct ttatggatcc 240attaaagctt cttctgaaaa ctctgggcat ttctgttgag caccttgtgg aggggctaag 300gaagtgtgta aatgagctgg gaccagaggc ttctgaagct gtgaagaaac tgctggaggc 360gctatcacac ttggtgtgac atcaagataa agagcggagg tggatgggga tggaagatga 420tgctcctatc ctccctgcct gaaacctgtt ctaccaatta tagatcaaat gccctaaaat 480gtagtgaccc gtgaaaagga caaataaagc aatgaatact aaaaaaaaaa aaaaaaaaaa 540aaaaaaaaaa 5507786DNAHomo Sapiens 7atggccgtga ctgcctgtca gggcttgggg ttcgtggttt cactgattgg gattgcgggc 60atcattgctg ccacctgcat ggaccagtgg agcacccaag acttgtacaa caaccccgta 120acagctgttt tcaactacca ggggctgtgg cgctcctgtg tccgagagag ctctggcttc 180accgagtgcc ggggctactt caccctgctg gggctgccag ccatgctgca ggcagtgcga 240gccctgatga tcgtaggcat cgtcctgggt gccattggcc tcctggtatc catctttgcc 300ctgaaatgca tccgcattgg cagcatggag gactctgcca aagccaacat gacactgacc 360tccgggatca tgttcattgt ctcaggtctt tgtgcaattg ctggagtgtc tgtgtttgcc 420aacatgctgg tgactaactt ctggatgtcc acagctaaca tgtacaccgg catgggtggg 480atggtgcaga ctgttcagac caggtacaca tttggtgcgg ctctgttcgt gggctgggtc 540gctggaggcc tcacactaat tgggggtgtg atgatgtgca tcgcctgccg gggcctggca 600ccagaagaaa ccaactacaa agccgtttct tatcatgcct caggccacag tgttgcctac 660aagcctggag gcttcaaggc cagcactggc tttgggtcca acaccaaaaa caagaagata 720tacgatggag gtgcccgcac agaggacgag gtacaatctt atccttccaa gcacgactat 780gtgtaa 7868180DNAHomo Sapiens 8tgcgccacca tggccgtgac tgcctgtcag ggcttggggt tcgtggtttc actgattggg 60attgcgggca tcattgctgc cacctgcatg gaccagtgga gcacccaaga cttgtacaac 120aaccccgtaa cagctgtttt caactaccag gggctgtggc gctcctgtgt ccgagagagc 1809309PRTHomo Sapiens 9Met Asn Gly Thr Tyr Asn Thr Cys Gly Ser Ser Asp Leu Thr Trp Pro 1 5 10 15 Pro Ala Ile Lys Leu Gly Phe Tyr Ala Tyr Leu Gly Val Leu Leu Val 20 25 30 Leu Gly Leu Leu Leu Asn Ser Leu Ala Leu Trp Val Phe Cys Cys Arg 35 40 45 Met Gln Gln Trp Thr Glu Thr Arg Ile Tyr Met Thr Asn Leu Ala Val 50 55 60 Ala Asp Leu Cys Leu Leu Cys Thr Leu Pro Phe Val Leu His Ser Leu 65 70 75 80 Arg Asp Thr Ser Asp Thr Pro Leu Cys Gln Leu Ser Gln Gly Ile Tyr 85 90 95 Leu Thr Asn Arg Tyr Met Ser Ile Ser Leu Val Thr Ala Ile Ala Val 100 105 110 Asp Arg Tyr Val Ala Val Arg His Pro Leu Arg Ala Arg Gly Leu Arg 115 120 125 Ser Pro Arg Gln Ala Ala Ala Val Cys Ala Val Leu Trp Val Leu Val 130 135 140 Ile Gly Ser Leu Val Ala Arg Trp Leu Leu Gly Ile Gln Glu Gly Gly 145 150 155 160 Phe Cys Phe Arg Ser Thr Arg His Asn Phe Asn Ser Met Arg Phe Pro 165 170 175 Leu Leu Gly Phe Tyr Leu Pro Leu Ala Val Val Val Phe Cys Ser Leu 180 185 190 Lys Val Val Thr Ala Leu Ala Gln Arg Pro Pro Thr Asp Val Gly Gln 195 200 205 Ala Glu Ala Thr Arg Lys Ala Ala Arg Met Val Trp Ala Asn Leu Leu 210 215 220 Val Phe Val Val Cys Phe Leu Pro Leu His Val Gly Leu Thr Val Arg 225 230 235 240 Leu Ala Val Gly Trp Asn Ala Cys Ala Leu Leu Glu Thr Ile Arg Arg 245 250 255 Ala Leu Tyr Ile Thr Ser Lys Leu Ser Asp Ala Asn Cys Cys Leu Asp 260 265 270 Ala Ile Cys Tyr Tyr Tyr Met Ala Lys Glu Phe Gln Glu Ala Ser Ala 275 280 285 Leu Ala Val Ala Pro Arg Ala Lys Ala His Lys Ser Gln Asp Ser Leu 290 295 300 Cys Val Thr Leu Ala 305 10394PRTHomo Sapiens 10Met Thr Ala Gly Arg Ser Gln Glu Arg Arg Ala Gln Glu Met Gly Arg 1 5 10 15 Gly Ser Val Gln Gly Leu Asp Leu Lys Gly Asp Leu Glu Phe Phe Thr 20 25 30 Ala Pro Met Leu Ser Leu Arg Ser Phe Val Phe Val Gly Val Gly Ser 35 40 45 Gly Leu Thr Ser Ser His Ile Pro Ala Gln Arg Trp Ala Glu Trp Gly 50 55 60 Gln Cys Leu Ala Pro Pro Ala Arg Ser Leu Leu Thr Ser Gly Ser Leu 65 70 75 80 Cys Cys Pro Arg Thr Met Asn Gly Thr Tyr Asn Thr Cys Gly Ser Ser 85 90 95 Asp Leu Thr Trp Pro Pro Ala Ile Lys Leu Gly Phe Tyr Ala Tyr Leu 100 105 110 Gly Val Leu Leu Val Leu Gly Leu Leu Leu Asn Ser Leu Ala Leu Trp 115 120 125 Val Phe Cys Cys Arg Met Gln Gln Trp Thr Glu Thr Arg Ile Tyr Met 130 135 140 Thr Asn Leu Ala Val Ala Asp Leu Cys Leu Leu Cys Thr Leu Pro Phe 145 150 155 160 Val Leu His Ser Leu Arg Asp Thr Ser Asp Thr Pro Leu Cys Gln Leu 165 170 175 Ser Gln Gly Ile Tyr Leu Thr Asn Arg Tyr Met Ser Ile Ser Leu Val 180 185 190 Thr Ala Ile Ala Val Asp Arg Tyr Val Ala Val Arg His Pro Leu Arg 195 200 205 Ala Arg Gly Leu Arg Ser Pro Arg Gln Ala Ala Ala Val Cys Ala Val 210 215 220 Leu Trp Val Leu Val Ile Gly Ser Leu Val Ala Arg Trp Leu Leu Gly 225 230 235 240 Ile Gln Glu Gly Gly Phe Cys Phe Arg Ser Thr Arg His Asn Phe Asn 245 250 255 Ser Met Ala

Phe Pro Leu Leu Gly Phe Tyr Leu Pro Leu Ala Val Val 260 265 270 Val Phe Cys Ser Leu Lys Val Val Thr Ala Leu Ala Gln Arg Pro Pro 275 280 285 Thr Asp Val Gly Gln Ala Glu Ala Thr Arg Lys Ala Ala Arg Met Val 290 295 300 Trp Ala Asn Leu Leu Val Phe Val Val Cys Phe Leu Pro Leu His Val 305 310 315 320 Gly Leu Thr Val Arg Leu Ala Val Gly Trp Asn Ala Cys Ala Leu Leu 325 330 335 Glu Thr Ile Arg Arg Ala Leu Tyr Ile Thr Ser Lys Leu Ser Asp Ala 340 345 350 Asn Cys Cys Leu Asp Ala Ile Cys Tyr Tyr Tyr Met Ala Lys Glu Phe 355 360 365 Gln Glu Ala Ser Ala Leu Ala Val Ala Pro Ser Ala Lys Ala His Lys 370 375 380 Ser Gln Asp Ser Leu Cys Val Thr Leu Ala 385 390 111073PRTHomo Sapiens 11Met Lys Thr Leu Leu Leu Asp Leu Ala Leu Trp Ser Leu Leu Phe Gln 1 5 10 15 Pro Gly Trp Leu Ser Phe Ser Ser Gln Val Ser Gln Asn Cys His Asn 20 25 30 Gly Ser Tyr Glu Ile Ser Val Leu Met Met Gly Asn Ser Ala Phe Ala 35 40 45 Glu Pro Leu Lys Asn Leu Glu Asp Ala Val Asn Glu Gly Leu Glu Ile 50 55 60 Val Arg Gly Arg Leu Gln Asn Ala Gly Leu Asn Val Thr Val Asn Ala 65 70 75 80 Thr Phe Met Tyr Ser Asp Gly Leu Ile His Asn Ser Gly Asp Cys Arg 85 90 95 Ser Ser Thr Cys Glu Gly Leu Asp Leu Leu Arg Lys Ile Ser Asn Ala 100 105 110 Gln Arg Met Gly Cys Val Leu Ile Gly Pro Ser Cys Thr Tyr Ser Thr 115 120 125 Phe Gln Met Tyr Leu Asp Thr Glu Leu Ser Tyr Pro Met Ile Ser Ala 130 135 140 Gly Ser Phe Gly Leu Ser Cys Asp Tyr Lys Glu Thr Leu Thr Arg Leu 145 150 155 160 Met Ser Pro Ala Arg Lys Leu Met Tyr Phe Leu Val Asn Phe Trp Lys 165 170 175 Thr Asn Asp Leu Pro Phe Lys Thr Tyr Ser Trp Ser Thr Ser Tyr Val 180 185 190 Tyr Lys Asn Gly Thr Glu Thr Glu Asp Cys Phe Trp Tyr Leu Asn Ala 195 200 205 Leu Glu Ala Ser Val Ser Tyr Phe Ser His Glu Leu Gly Phe Lys Val 210 215 220 Val Leu Arg Gln Asp Lys Glu Phe Gln Asp Ile Leu Met Asp His Asn 225 230 235 240 Arg Lys Ser Asn Val Ile Ile Met Cys Gly Gly Pro Glu Phe Leu Tyr 245 250 255 Lys Leu Lys Gly Asp Arg Ala Val Ala Glu Asp Ile Val Ile Ile Leu 260 265 270 Val Asp Leu Phe Asn Asp Gln Tyr Leu Glu Asp Asn Val Thr Ala Pro 275 280 285 Asp Tyr Met Lys Asn Val Leu Val Leu Thr Leu Ser Pro Gly Asn Ser 290 295 300 Leu Leu Asn Ser Ser Phe Ser Arg Asn Leu Ser Pro Thr Lys Arg Asp 305 310 315 320 Phe Ala Leu Ala Tyr Leu Asn Gly Ile Leu Leu Phe Gly His Met Leu 325 330 335 Lys Ile Phe Leu Glu Asn Gly Glu Asn Ile Thr Thr Pro Lys Phe Ala 340 345 350 His Ala Phe Arg Asn Leu Thr Phe Glu Gly Tyr Asp Gly Pro Val Thr 355 360 365 Leu Asp Asp Trp Gly Asp Val Asp Ser Thr Met Val Leu Leu Tyr Thr 370 375 380 Ser Val Asp Thr Lys Lys Tyr Lys Val Leu Leu Thr Tyr Asp Thr His 385 390 395 400 Val Asn Lys Thr Tyr Pro Val Asp Met Ser Pro Thr Phe Thr Trp Lys 405 410 415 Asn Ser Lys Leu Pro Asn Asp Ile Thr Gly Arg Gly Pro Gln Ile Leu 420 425 430 Met Ile Ala Val Phe Thr Leu Thr Gly Ala Val Val Leu Leu Leu Leu 435 440 445 Val Ala Leu Leu Met Leu Arg Lys Tyr Arg Lys Asp Tyr Glu Leu Arg 450 455 460 Gln Lys Lys Trp Ser His Ile Pro Pro Glu Asn Ile Phe Pro Leu Glu 465 470 475 480 Thr Asn Glu Thr Asn His Val Ser Leu Lys Ile Asp Asp Asp Lys Arg 485 490 495 Arg Asp Thr Ile Gln Arg Leu Arg Gln Cys Lys Tyr Asp Lys Lys Arg 500 505 510 Val Ile Leu Lys Asp Leu Lys His Asn Asp Gly Asn Phe Thr Glu Lys 515 520 525 Gln Lys Ile Glu Leu Asn Lys Leu Leu Gln Ile Asp Tyr Tyr Asn Leu 530 535 540 Thr Lys Phe Tyr Gly Thr Val Lys Leu Asp Thr Met Ile Phe Gly Val 545 550 555 560 Ile Glu Tyr Cys Glu Arg Gly Ser Leu Arg Glu Val Leu Asn Asp Thr 565 570 575 Ile Ser Tyr Pro Asp Gly Thr Phe Met Asp Trp Glu Phe Lys Ile Ser 580 585 590 Val Leu Tyr Asp Ile Ala Lys Gly Met Ser Tyr Leu His Ser Ser Lys 595 600 605 Thr Glu Val His Gly Arg Leu Lys Ser Thr Asn Cys Val Val Asp Ser 610 615 620 Arg Met Val Val Lys Ile Thr Asp Phe Gly Cys Asn Ser Ile Leu Pro 625 630 635 640 Pro Lys Lys Asp Leu Trp Thr Ala Pro Glu His Leu Arg Gln Ala Asn 645 650 655 Ile Ser Gln Lys Gly Asp Val Tyr Ser Tyr Gly Ile Ile Ala Gln Glu 660 665 670 Ile Ile Leu Arg Lys Glu Thr Phe Tyr Thr Leu Ser Cys Arg Asp Arg 675 680 685 Asn Glu Lys Ile Phe Arg Val Glu Asn Ser Asn Gly Met Lys Pro Phe 690 695 700 Arg Pro Asp Leu Phe Leu Glu Thr Ala Glu Glu Lys Glu Leu Glu Val 705 710 715 720 Tyr Leu Leu Val Lys Asn Cys Trp Glu Glu Asp Pro Glu Lys Arg Pro 725 730 735 Asp Phe Lys Lys Ile Glu Thr Thr Leu Ala Lys Ile Phe Gly Leu Phe 740 745 750 His Asp Gln Lys Asn Glu Ser Tyr Met Asp Thr Leu Ile Arg Arg Leu 755 760 765 Gln Leu Tyr Ser Arg Asn Leu Glu His Leu Val Glu Glu Arg Thr Gln 770 775 780 Leu Tyr Lys Ala Glu Arg Asp Arg Ala Asp Arg Leu Asn Phe Met Leu 785 790 795 800 Leu Pro Arg Leu Val Val Lys Ser Leu Lys Glu Lys Gly Phe Val Glu 805 810 815 Pro Glu Leu Tyr Glu Glu Val Thr Ile Tyr Phe Ser Asp Ile Val Gly 820 825 830 Phe Thr Thr Ile Cys Lys Tyr Ser Thr Pro Met Glu Val Val Asp Met 835 840 845 Leu Asn Asp Ile Tyr Lys Ser Phe Asp His Ile Val Asp His His Asp 850 855 860 Val Tyr Lys Val Glu Thr Ile Gly Asp Ala Tyr Met Val Ala Ser Gly 865 870 875 880 Leu Pro Lys Arg Asn Gly Asn Arg His Ala Ile Asp Ile Ala Lys Met 885 890 895 Ala Leu Glu Ile Leu Ser Phe Met Gly Thr Phe Glu Leu Glu His Leu 900 905 910 Pro Gly Leu Pro Ile Trp Ile Arg Ile Gly Val His Ser Gly Pro Cys 915 920 925 Ala Ala Gly Val Val Gly Ile Lys Met Pro Arg Tyr Cys Leu Phe Gly 930 935 940 Asp Thr Val Asn Thr Ala Ser Arg Met Glu Ser Thr Gly Leu Pro Leu 945 950 955 960 Arg Ile His Val Ser Gly Ser Thr Ile Ala Ile Leu Lys Arg Thr Glu 965 970 975 Cys Gln Phe Leu Tyr Glu Val Arg Gly Glu Thr Tyr Leu Lys Gly Arg 980 985 990 Gly Asn Glu Thr Thr Tyr Trp Leu Thr Gly Met Lys Asp Gln Lys Phe 995 1000 1005 Asn Leu Pro Thr Pro Pro Thr Val Glu Asn Gln Gln Arg Leu Gln 1010 1015 1020 Ala Glu Phe Ser Asp Met Ile Ala Asn Ser Leu Gln Lys Arg Gln 1025 1030 1035 Ala Ala Gly Ile Arg Ser Gln Lys Pro Arg Arg Val Ala Ser Tyr 1040 1045 1050 Lys Lys Gly Thr Leu Glu Tyr Leu Gln Leu Asn Thr Thr Asp Lys 1055 1060 1065 Glu Ser Thr Tyr Phe 1070 12111PRTHomo Sapiens 12Met Lys Thr Leu Leu Leu Asp Leu Ala Leu Trp Ser Leu Leu Phe Gln 1 5 10 15 Pro Gly Trp Leu Ser Phe Ser Ser Gln Val Ser Gln Asn Cys His Asn 20 25 30 Gly Ser Tyr Glu Ile Ser Val Leu Met Met Gly Asn Ser Ala Phe Ala 35 40 45 Glu Pro Leu Lys Asn Leu Glu Asp Ala Val Asn Glu Gly Leu Glu Ile 50 55 60 Val Arg Gly Arg Leu Gln Asn Ala Gly Leu Asn Val Thr Val Asn Ala 65 70 75 80 Thr Phe Met Tyr Ser Asp Gly Leu Ile His Asn Ser Gly Asp Cys Arg 85 90 95 Ser Ser Thr Cys Glu Gly Leu Asp Leu Leu Arg Lys Ile Ser Pro 100 105 110 13258PRTHomo Sapiens 13Met Lys Thr Leu Leu Leu Asp Leu Ala Leu Trp Ser Leu Leu Phe Gln 1 5 10 15 Pro Gly Trp Leu Ser Phe Ser Ser Gln Val Ser Gln Asn Cys His Asn 20 25 30 Gly Ser Tyr Glu Ile Ser Val Leu Met Met Gly Asn Ser Ala Phe Ala 35 40 45 Glu Pro Leu Lys Asn Leu Glu Asp Ala Val Asn Glu Gly Leu Glu Ile 50 55 60 Val Arg Gly Arg Leu Gln Asn Ala Gly Leu Asn Val Thr Val Asn Ala 65 70 75 80 Thr Phe Met Tyr Ser Asp Gly Leu Ile His Asn Ser Gly Asp Cys Arg 85 90 95 Ser Ser Thr Cys Glu Gly Leu Asp Leu Leu Arg Lys Ile Ser Asn Ala 100 105 110 Gln Arg Met Gly Cys Val Leu Ile Gly Pro Ser Cys Thr Tyr Ser Thr 115 120 125 Phe Gln Met Tyr Leu Asp Thr Glu Leu Ser Tyr Pro Met Ile Ser Ala 130 135 140 Gly Ser Phe Gly Leu Ser Cys Asp Tyr Lys Glu Thr Leu Thr Arg Leu 145 150 155 160 Met Ser Pro Ala Arg Lys Leu Met Tyr Phe Leu Val Asn Phe Trp Lys 165 170 175 Thr Asn Asp Leu Pro Phe Lys Thr Tyr Ser Trp Ser Thr Ser Tyr Val 180 185 190 Tyr Lys Asn Gly Thr Glu Thr Glu Asp Cys Phe Trp Tyr Leu Asn Ala 195 200 205 Leu Glu Ala Ser Val Ser Tyr Phe Ser His Glu Leu Gly Phe Lys Val 210 215 220 Val Leu Arg Gln Asp Lys Glu Phe Gln Asp Ile Leu Met Asp His Asn 225 230 235 240 Arg Lys Ser Asn Val Thr Ser Thr Trp Arg Thr Met Ser Gln Pro Leu 245 250 255 Thr Ile 141070PRTHomo Sapiens 14Met Lys Thr Leu Leu Leu Asp Leu Ala Leu Trp Ser Leu Leu Phe Gln 1 5 10 15 Pro Gly Trp Leu Ser Phe Ser Ser Gln Val Ser Gln Asn Cys His Asn 20 25 30 Gly Ser Tyr Glu Ile Ser Val Leu Met Met Gly Asn Ser Ala Phe Ala 35 40 45 Glu Pro Leu Lys Asn Leu Glu Asp Ala Val Asn Glu Gly Leu Glu Ile 50 55 60 Val Arg Gly Arg Leu Gln Asn Ala Gly Leu Asn Val Thr Val Asn Ala 65 70 75 80 Thr Phe Met Tyr Ser Asp Gly Leu Ile His Asn Ser Gly Asp Cys Arg 85 90 95 Ser Ser Thr Cys Glu Gly Leu Asp Leu Leu Arg Lys Ile Ser Asn Ala 100 105 110 Gln Arg Met Gly Cys Val Leu Ile Gly Pro Ser Cys Thr Tyr Ser Thr 115 120 125 Phe Gln Met Tyr Leu Asp Thr Glu Leu Ser Tyr Pro Met Ile Ser Ala 130 135 140 Gly Ser Phe Gly Leu Ser Cys Asp Tyr Lys Glu Thr Leu Thr Arg Leu 145 150 155 160 Met Ser Pro Ala Arg Lys Leu Met Tyr Phe Leu Val Asn Phe Trp Lys 165 170 175 Thr Asn Asp Leu Pro Phe Lys Thr Tyr Ser Trp Ser Thr Ser Tyr Val 180 185 190 Tyr Lys Asn Gly Thr Glu Thr Glu Asp Cys Phe Trp Tyr Leu Asn Ala 195 200 205 Leu Glu Ala Ser Val Ser Tyr Phe Ser His Glu Leu Gly Phe Lys Val 210 215 220 Val Leu Arg Gln Asp Lys Glu Phe Gln Asp Ile Leu Met Asp His Asn 225 230 235 240 Arg Lys Ser Asn Val Ile Ile Met Cys Gly Gly Pro Glu Phe Leu Tyr 245 250 255 Lys Leu Lys Gly Asp Arg Ala Val Ala Glu Asp Ile Val Ile Ile Leu 260 265 270 Val Asp Leu Phe Asn Asp Gln Tyr Leu Glu Asp Asn Val Thr Ala Pro 275 280 285 Asp Tyr Met Lys Asn Val Leu Val Leu Thr Leu Ser Pro Gly Asn Ser 290 295 300 Leu Leu Asn Ser Ser Phe Ser Arg Asn Leu Ser Pro Thr Lys Arg Asp 305 310 315 320 Phe Ala Leu Ala Tyr Leu Asn Gly Ile Leu Leu Phe Gly His Met Leu 325 330 335 Lys Ile Phe Leu Glu Asn Gly Glu Asn Ile Thr Thr Pro Lys Phe Ala 340 345 350 His Ala Phe Arg Asn Leu Thr Phe Glu Gly Tyr Asp Gly Pro Val Thr 355 360 365 Leu Asp Asp Trp Gly Asp Val Asp Ser Thr Met Val Leu Leu Tyr Thr 370 375 380 Ser Val Asp Thr Lys Lys Tyr Lys Val Leu Leu Thr Tyr Asp Thr His 385 390 395 400 Val Asn Lys Thr Tyr Pro Val Asp Met Ser Pro Thr Phe Thr Trp Lys 405 410 415 Asn Ser Lys Leu Pro Asn Asp Ile Thr Gly Arg Gly Pro Gln Ile Leu 420 425 430 Met Ile Ala Val Phe Thr Leu Thr Gly Ala Val Val Leu Leu Leu Leu 435 440 445 Val Ala Leu Leu Met Leu Arg Lys Tyr Arg Lys Asp Tyr Glu Leu Arg 450 455 460 Gln Lys Lys Trp Ser His Ile Pro Pro Glu Asn Ile Phe Pro Leu Glu 465 470 475 480 Thr Asn Glu Thr Asn His Val Ser Leu Lys Ile Asp Asp Asp Lys Arg 485 490 495 Arg Asp Thr Ile Gln Arg Leu Arg Gln Cys Lys Tyr Asp Lys Lys Arg 500 505 510 Val Ile Leu Lys Asp Leu Lys His Asn Asp Gly Asn Phe Thr Glu Lys 515 520 525 Gln Lys Ile Glu Leu Asn Lys Ile Asp Tyr Tyr Asn Leu Thr Lys Phe 530 535 540 Tyr Gly Thr Val Lys Leu Asp Thr Met Ile Phe Gly Val Ile Glu Tyr 545 550 555 560 Cys Glu Arg Gly Ser Leu Arg Glu Val Leu Asn Asp Thr Ile Ser Tyr 565 570 575 Pro Asp Gly Thr Phe Met Asp Trp Glu Phe Lys Ile Ser Val Leu Tyr 580 585 590 Asp Ile Ala Lys Gly Met Ser Tyr Leu His Ser Ser Lys Thr Glu Val 595 600 605 His Gly Arg Leu Lys Ser Thr Asn Cys Val Val Asp Ser Arg Met Val 610 615 620 Val Lys Ile Thr Asp Phe Gly Cys Asn Ser Ile Leu Pro Pro Lys Lys 625 630 635 640 Asp Leu Trp Thr Ala Pro Glu His Leu Arg Gln Ala Asn Ile Ser Gln 645 650 655 Lys Gly Asp Val Tyr Ser Tyr Gly Ile Ile Ala Gln Glu Ile Ile Leu 660 665 670 Arg Lys Glu Thr Phe Tyr Thr Leu Ser Cys Arg Asp Arg Asn Glu Lys 675 680 685 Ile Phe Arg Val Glu Asn Ser Asn Gly Met Lys Pro Phe Arg Pro Asp 690 695 700 Leu Phe Leu Glu Thr Ala Glu Glu Lys Glu Leu Glu Val Tyr Leu Leu 705

710 715 720 Val Lys Asn Cys Trp Glu Glu Asp Pro Glu Lys Arg Pro Asp Phe Lys 725 730 735 Lys Ile Glu Thr Thr Leu Ala Lys Ile Phe Gly Leu Phe His Asp Gln 740 745 750 Lys Asn Glu Ser Tyr Met Asp Thr Leu Ile Arg Arg Leu Gln Leu Tyr 755 760 765 Ser Arg Asn Leu Glu His Leu Val Glu Glu Arg Thr Gln Leu Tyr Lys 770 775 780 Ala Glu Arg Asp Arg Ala Asp Arg Leu Asn Phe Met Leu Leu Pro Arg 785 790 795 800 Leu Val Val Lys Ser Leu Lys Glu Lys Gly Phe Val Glu Pro Glu Leu 805 810 815 Tyr Glu Glu Val Thr Ile Tyr Phe Ser Asp Ile Val Gly Phe Thr Thr 820 825 830 Ile Cys Lys Tyr Ser Thr Pro Met Glu Val Val Asp Met Leu Asn Asp 835 840 845 Ile Tyr Lys Ser Phe Asp His Ile Val Asp His His Asp Val Tyr Lys 850 855 860 Val Glu Thr Ile Gly Asp Ala Tyr Met Val Ala Ser Gly Leu Pro Lys 865 870 875 880 Arg Asn Gly Asn Arg His Ala Ile Asp Ile Ala Lys Met Ala Leu Glu 885 890 895 Ile Leu Ser Phe Met Gly Thr Phe Glu Leu Glu His Leu Pro Gly Leu 900 905 910 Pro Ile Trp Ile Arg Ile Gly Val His Ser Gly Pro Cys Ala Ala Gly 915 920 925 Val Val Gly Ile Lys Met Pro Arg Tyr Cys Leu Phe Gly Asp Thr Val 930 935 940 Asn Thr Ala Ser Arg Met Glu Ser Thr Gly Leu Pro Leu Arg Ile His 945 950 955 960 Val Ser Gly Ser Thr Ile Ala Ile Leu Lys Arg Thr Glu Cys Gln Phe 965 970 975 Leu Tyr Glu Val Arg Gly Glu Thr Tyr Leu Lys Gly Arg Gly Asn Glu 980 985 990 Thr Thr Tyr Trp Leu Thr Gly Met Lys Asp Gln Lys Phe Asn Leu Pro 995 1000 1005 Thr Pro Pro Thr Val Glu Asn Gln Gln Arg Leu Gln Ala Glu Phe 1010 1015 1020 Ser Asp Met Ile Ala Asn Ser Leu Gln Lys Arg Gln Ala Ala Gly 1025 1030 1035 Ile Arg Ser Gln Lys Pro Arg Arg Val Ala Ser Tyr Lys Lys Gly 1040 1045 1050 Thr Leu Glu Tyr Leu Gln Leu Asn Thr Thr Asp Lys Glu Ser Thr 1055 1060 1065 Tyr Phe 1070 1593PRTHomo Sapiens 15Met Lys Leu Val Thr Ile Phe Leu Leu Val Thr Ile Ser Leu Cys Ser 1 5 10 15 Tyr Ser Ala Thr Ala Lys Leu Ile Asn Lys Cys Pro Leu Pro Val Asp 20 25 30 Lys Leu Ala Pro Leu Pro Leu Asp Asn Ile Leu Pro Phe Met Asp Pro 35 40 45 Leu Lys Leu Leu Leu Lys Thr Leu Gly Ile Ser Val Glu His Leu Val 50 55 60 Glu Gly Leu Arg Lys Cys Val Asn Glu Leu Gly Pro Glu Ala Ser Glu 65 70 75 80 Ala Val Lys Lys Leu Leu Glu Ala Leu Ser His Leu Val 85 90 16261PRTHomo Sapiens 16Met Ala Val Thr Ala Cys Gln Gly Leu Gly Phe Val Val Ser Leu Ile 1 5 10 15 Gly Ile Ala Gly Ile Ile Ala Ala Thr Cys Met Asp Gln Trp Ser Thr 20 25 30 Gln Asp Leu Tyr Asn Asn Pro Val Thr Ala Val Phe Asn Tyr Gln Gly 35 40 45 Leu Trp Arg Ser Cys Val Arg Glu Ser Ser Gly Phe Thr Glu Cys Arg 50 55 60 Gly Tyr Phe Thr Leu Leu Gly Leu Pro Ala Met Leu Gln Ala Val Arg 65 70 75 80 Ala Leu Met Ile Val Gly Ile Val Leu Gly Ala Ile Gly Leu Leu Val 85 90 95 Ser Ile Phe Ala Leu Lys Cys Ile Arg Ile Gly Ser Met Glu Asp Ser 100 105 110 Ala Lys Ala Asn Met Thr Leu Thr Ser Gly Ile Met Phe Ile Val Ser 115 120 125 Gly Leu Cys Ala Ile Ala Gly Val Ser Val Phe Ala Asn Met Leu Val 130 135 140 Thr Asn Phe Trp Met Ser Thr Ala Asn Met Tyr Thr Gly Met Gly Gly 145 150 155 160 Met Val Gln Thr Val Gln Thr Arg Tyr Thr Phe Gly Ala Ala Leu Phe 165 170 175 Val Gly Trp Val Ala Gly Gly Leu Thr Leu Ile Gly Gly Val Met Met 180 185 190 Cys Ile Ala Cys Arg Gly Leu Ala Pro Glu Glu Thr Asn Tyr Lys Ala 195 200 205 Val Ser Tyr His Ala Ser Gly His Ser Val Ala Tyr Lys Pro Gly Gly 210 215 220 Phe Lys Ala Ser Thr Gly Phe Gly Ser Asn Thr Lys Asn Lys Lys Ile 225 230 235 240 Tyr Asp Gly Gly Ala Arg Thr Glu Asp Glu Val Gln Ser Tyr Pro Ser 245 250 255 Lys His Asp Tyr Val 260 1710PRTHomo Sapiens 17Asp Gln Trp Ser Thr Gln Asp Leu Tyr Asn 1 5 10 1811PRTHomo Sapiens 18Asn Asn Pro Val Thr Ala Val Phe Asn Tyr Gln 1 5 10 1947PRTHomo Sapiens 19Met Ala Val Thr Ala Cys Gln Gly Leu Gly Phe Val Val Ser Leu Ile 1 5 10 15 Gly Ile Ala Gly Ile Ile Ala Ala Thr Cys Met Asp Gln Trp Ser Thr 20 25 30 Gln Asp Leu Tyr Asn Asn Pro Val Thr Ala Val Phe Asn Tyr Gln 35 40 45 2021DNAArtificial SequenceOligonucleotide 20aggtacatga gcatcagcct g 212121DNAArtificial SequenceOligonucleotide 21gcagcagttg gcatctgaga g 212221DNAArtificial SequenceOligonucleotide 22gcaatagaca ttgccaagat g 212321DNAArtificial SequenceOligonucleotide 23aacgctgttg attctccaca g 212433DNAArtificial SequenceOligonucleotide 24ggatcctcct ttagttccca ggtgagtcag aac 332521DNAArtificial SequenceOligonucleotide 25tgctctggag gctagcgttt c 212621DNAArtificial SequenceOligonucleotide 26accaatcatg ttagcctcaa g 212721DNAArtificial SequenceOligonucleotide 27agctatggga tcatcgcaca g 212821DNAArtificial SequenceOligonucleotide 28cctttgagct ggagcatctt c 212921DNAArtificial SequenceOligonucleotide 29ctttctagct ggagacatca g 213021DNAArtificial SequenceOligonucleotide 30caccatggta ctgtcaacat c 213121DNAArtificial SequenceOligonucleotide 31atgtcataca agacagagat c 213221DNAArtificial SequenceOligonucleotide 32tctgccttgt acagctgtgt c 213321DNAArtificial SequenceOligonucleotide 33tctgtggtat tcagctgcaa g 213422DNAArtificial SequenceOligonucleotide 34tactcaggaa aatttcacct tg 223527DNAArtificial SequenceOligonucleotide 35gaccacaaca ggaaaagcaa tgtgacc 273622DNAArtificial SequenceOligonucleotide 36gatagaattg aacaagattg ac 223721DNAArtificial SequenceOligonucleotide 37cagcctttgt agttactctg c 213821DNAArtificial SequenceOligonucleotide 38tgtcacacca agtgtgatag c 213928DNAArtificial SequenceOligonucleotide 39ggttcgtggt ttcactgatt gggattgc 284027DNAArtificial SequenceOligonucleotide 40cggctttgta gttggtttct tctggtg 27413814DNAHomo Sapiens 41ctattgaagc cacctgctca ggacaatgaa attcttcagt tacattctgg tttatcgccg 60atttctcttc gtggttttca ctgtgttggt tttactacct ctgcccatcg tcctccacac 120caaggaagca gaatgtgcct acacactctt tgtggtcgcc acattttggc tcacagaagc 180attgcctctg tcggtaacag ctttgctacc tagtttaatg ttacccatgt ttgggatcat 240gccttctaag aaggtggcat ctgcttattt caaggatttt cacttactgc taattggagt 300tatctgttta gcaacatcca tagaaaaatg gaatttgcac aagagaattg ctctgaaaat 360ggtgatgatg gttggtgtaa atcctgcatg gctgacgctg gggttcatga gcagcactgc 420ctttttgtct atgtggctca gcaacacctc gacggctgcc atggtgatgc ccattgcgga 480ggctgtagtg cagcagatca tcaatgcaga agcagaggtc gaggccactc agatgactta 540cttcaacgga tcaaccaacc acggactaga aattgatgaa agtgttaatg gacatgaaat 600aaatgagagg aaagagaaaa caaaaccagt tccaggatac aataatgata cagggaaaat 660ttcaagcaag gtggagttgg aaaagaactc aggcatgaga accaaatatc gaacaaagaa 720gggccacgtg acacgtaaac ttacgtgttt gtgcattgcc tactcttcta ccattggtgg 780actgacaaca atcactggta cctccaccaa cttgatcttt gcagagtatt tcaatacacg 840ctatcctgac tgtcgttgcc tcaactttgg atcatggttt acgttttcct tcccagctgc 900ccttatcatt ctactcttat cctggatctg gcttcagtgg cttttcctag gattcaattt 960taaggagatg ttcaaatgtg gcaaaaccaa aacagtccaa caaaaagctt gtgctgaggt 1020gattaagcaa gaataccaaa agcttgggcc aataaggtat caagaaattg tgaccttggt 1080cctcttcatt ataatggctc tgctatggtt tagtcgagac cccggatttg ttcctggttg 1140gtctgcactt ttttcagagt accctggttt tgctacagat tcaactgttg ctttacttat 1200agggctgcta ttctttctta tcccagctaa gacactgact aaaactacac ctacaggaga 1260aattgttgct tttgattact ctccactgat tacttggaaa gaattccagt cattcatgcc 1320ctgggatata gccattcttg ttggtggagg gtttgccctg gcagatggtt gtgaggagtc 1380tggattatct aagtggatag gaaataaatt atctcctctg ggttcattac cagcatggct 1440aataattctg atatcttctt tgatggtgac atctttaact gaggtagcca gcaatccagc 1500taccattaca ctctttctcc caatattatc tccattggcc gaagccattc atgtgaaccc 1560tctttatatt ctgatacctt ctactctgtg tacttcattt gcattcctcc taccagtagc 1620aaatccaccc aatgctattg tcttttcata tggtcatctg aaagtcattg acatggttaa 1680agctggactt ggtgtcaaca ttgttggtgt tgctgtggtt atgcttggca tatgtacttg 1740gattgtaccc atgtttgacc tctacactta cccttcgtgg gctcctgcta tgagtaatga 1800gaccatgcca taataagcac aaaatttctg actatcttgc ggtaatttct ggaagacatt 1860aatgattgac tgtaaaatgt ggctctaaat aactaatgac acacatttaa atcagttatg 1920gtgtagctgc tgcaattccc gtgaataccc gaaacctgct ggtataactc agagtccata 1980tttgttattg cagtgcaact aaagagcatc tatgtgcctt catcaagaag cccatgtttt 2040gagattttgc tcatgaacca tctgcaactt gcttcatcat aagaataatt tataacttga 2100ccttcaaaga gattagagca tttgtttcat cttacagttg gagttcaatg taacatttta 2160aatgcaattt attatttcag aaatttccca tgaaactaaa aatagaaaat aagatataca 2220agttaattcg gtacttggat aaatcatttc tgcattgttg ttccagagaa tttgctgaga 2280aatcaaagcc atggtcatct ggtgatgaag agaaaaggtt aatctaaatg atatgtgcat 2340ttcctcattt aaaaaatcca attggattat tcttaatata tacatgtaat atgaaaattg 2400agattgaagc actaattcca aaattatggc tgaatatact aaataacaga aaagttacag 2460ataagaattt atttctactg aactctatag ttagtgtaat ataattcata tttttatgat 2520attggcacac tgagaaattc attttgtaga gctatggata aggcttgcta tgatttgcac 2580tattagtaca gtatagttag aaaggaaagc tgaacactat aaaactatta acatattttc 2640gtatatgagt aacaactttg cttaagtgtt tatcttagtt cagaaataca taatgtcata 2700tgttaaaaat aaagagatgt agaaatctaa atgaattatc actgtgtata cagacagaaa 2760aatcacataa ctctggtgtg ttaacattgc aatgaaaaaa tgaaaaaaag aaggaaaaaa 2820gaataagaat gaaaactgct gacgtattac aaaacagaaa aataaatgat ttaaaatcaa 2880atcaaaaaga aaaaaactaa acatttaaac aaaaatggga taagaatagt cttctagaag 2940tgaggatgcg taaaagaatg agtttccaat taccctgatg tgacaattac acattgtaga 3000caggtagcaa aatatcacat acacccccaa aatatgtaca aatattatat atcaataaat 3060aaatttttaa agagtaagtg ctattggcat tccaaaattc agctaaagga aaaatgatca 3120aaaacaaagt aaggtgcaca gttagcaaaa gatgcagatg ttatatcaca gcaattctca 3180tgctaaaaat acaacaaaag acaaagcaaa aaataaacct ttgctttttt tttttttttt 3240tttttttttt gagacggagt ctcgctctgt cgcccaggct ggagtgcagt ggcgggatct 3300cggctcactg caagctccgc ctcccaggtt cacgccattc tcctgcctca gccaaacctt 3360tgctattttt aatcttcgtt ggcactttcc agctgttact gaccttgtca ttttttgttc 3420aaataagatt atttacaaac ttattcttga aactaaatat agtaaagagg gtttttaaaa 3480taatatttaa catacgaatt attaattggc catgttcatt atttatctat gtttattaat 3540gggccaatgc aaaaaatcat tttttcaaag aaaaatttgt ccatgtaaag cttaaattat 3600aatattgctg ctttgtataa ctcttctatg tttattctat tcatttgttc ctttccctac 3660catattttac acatgtattt ataatctgta gtatttatta catttctgct tttttctagt 3720cattcaattt atcactgctg aattgcatca gatcatggat gcatttttat tatgaaaaaa 3780taaaatgact tttcaaatta aaaaaaaaaa aaaa 381442734DNAHomo Sapiens 42caggacaatg aaattcttca gttacattct ggtttatcgc cgatttctct tcgtggtttt 60cactgtgttg gttttactac ctctgcccat cgtcctccac accaaggaag cagaatgtgc 120ctacacactc tttgtggtcg ccacattttg gctcacagaa gcattgcctc tgtcggtaac 180agctttgcta cctagtttaa tgttacccat gtttgggatc atgccttcta agaaggtggc 240atctgcttat ttcaaggatt ttcacttact gctaattgga gttatctgtt tagcaacatc 300catagaaaaa tggaatttgc acaagagaat tgctctgaaa atggtgatga tggttggtgt 360aaatcctgca tggctgacgc tggggttcat gagcagcact gcctttttgt ctatgtggct 420cagcaacacc tcgacggctg ccatggtgat gcccattgcg gaggctgtag tgcagcagat 480catcaatgca gaagcagagg tcgaggccac tcagatgact tacttcaacg gatcaaccaa 540ccacggacta gaaattgatg aaagtgttaa tggacatgaa ataaatgaga ggaaagagaa 600aacaaaacca gttccaggat acaataatga tacagggaaa atttcaagca aggtggagtt 660ggaaaagact gtttaactac tgaaatgaag ctattctcct gactaaacat aactgaaaaa 720ccattcatta aatg 73443539DNAHomo Sapiens 43gccactcaga tgacttactt caacggatca accaaccacg gactagaaat tgatgaaagt 60gttaatggac atgaaataaa tgagaggaaa gagaaaacaa aaccagttcc aggatacaat 120aatgatacag ggaaaatttc aagcaaggtg gagttggaaa agcactggaa acttgcagtt 180caagatggct ccccatctcc ctctgtccat tctgtatcgc agctagctgc tcaaggaaag 240gagaaagtgg aaggcatatg tacttagaaa ttattctatt actttcctgg atttaagagt 300attcagattt tctatttcaa catcaaacaa ttgcattttt aaaaagaaat ttatgtgttc 360catgtcaaat ttagtagtgt gtggttgttt ataatatttt cttatatcta cttaatttct 420atagtattta tagttatatg tctttatttc taacattttt cttgtgcttt taaagattat 480ttaaagatta tttttaaata atctttattt catttaaata aaatatttta tttaagtct 53944556DNAHomo Sapiens 44cacggactag aaattgatga aagtgttaat ggacatgaaa taaatgagag gaaagagaaa 60acaaaaccag ttccaggata caataatgat acagggaaaa tttcaagcaa ggtggagttg 120gaaaagaact caggcatgag aaccaaatat cgaacaaaga agggccacgt gacacgtaaa 180cttacgtgtt tgtgcattgc ctactcttct accattggtg gactgacaac aatcactggt 240acctccacca acttgatctt tgcagagtat ttcaatacat tccatccaca cagaagagga 300gatcgtacaa ggcatgtaca ccaggaggca gaaatttgag gcatatcttg gaactctgtc 360taccacatcc tgaacatcac acagtttcca ctcttgttgc cttcaatcct gagaatgcat 420ccaggagcca ttctgtttta tgtcaattac taattagatc atgtcacgtt actaacttac 480tacgttccaa ttagtcctta ttgcatttgt aataaaatcc gcatactttc ggactggcta 540caaggttata catgat 55645595PRTHomo Sapiens 45Met Lys Phe Phe Ser Tyr Ile Leu Val Tyr Arg Arg Phe Leu Phe Val 1 5 10 15 Val Phe Thr Val Leu Val Leu Leu Pro Leu Pro Ile Val Leu His Thr 20 25 30 Lys Glu Ala Glu Cys Ala Tyr Thr Leu Phe Val Val Ala Thr Phe Trp 35 40 45 Leu Thr Glu Ala Leu Pro Leu Ser Val Thr Ala Leu Leu Pro Ser Leu 50 55 60 Met Leu Pro Met Phe Gly Ile Met Pro Ser Lys Lys Val Ala Ser Ala 65 70 75 80 Tyr Phe Lys Asp Phe His Leu Leu Leu Ile Gly Val Ile Cys Leu Ala 85 90 95 Thr Ser Ile Glu Lys Trp Asn Leu His Lys Arg Ile Ala Leu Lys Met 100 105 110 Val Met Met Val Gly Val Asn Pro Ala Trp Leu Thr Leu Gly Phe Met 115 120 125 Ser Ser Thr Ala Phe Leu Ser Met Trp Leu Ser Asn Thr Ser Thr Ala 130 135 140 Ala Met Val Met Pro Ile Ala Glu Ala Val Val Gln Gln Ile Ile Asn 145 150 155 160 Ala Glu Ala Glu Val Glu Ala Thr Gln Met Thr Tyr Phe Asn Gly Ser 165 170 175 Thr Asn His Gly Leu Glu Ile Asp Glu Ser Val Asn Gly His Glu Ile 180 185 190 Asn Glu Arg Lys Glu Lys Thr Lys Pro Val Pro Gly Tyr Asn Asn Asp 195 200 205 Thr Gly Lys Ile Ser Ser Lys Val Glu Leu Glu Lys Asn Ser Gly Met 210 215 220 Arg Thr Lys Tyr Arg Thr Lys Lys Gly His Val Thr Arg Lys Leu Thr 225 230 235 240 Cys Leu Cys Ile Ala Tyr Ser Ser Thr Ile Gly Gly Leu Thr Thr Ile 245 250 255 Thr Gly Thr Ser Thr Asn Leu Ile Phe Ala Glu Tyr Phe Asn Thr Arg 260 265 270 Tyr Pro Asp Cys Arg Cys Leu Asn Phe Gly Ser Trp Phe Thr Phe Ser 275 280 285

Phe Pro Ala Ala Leu Ile Ile Leu Leu Leu Ser Trp Ile Trp Leu Gln 290 295 300 Trp Leu Phe Leu Gly Phe Asn Phe Lys Glu Met Phe Lys Cys Gly Lys 305 310 315 320 Thr Lys Thr Val Gln Gln Lys Ala Cys Ala Glu Val Ile Lys Gln Glu 325 330 335 Tyr Gln Lys Leu Gly Pro Ile Arg Tyr Gln Glu Ile Val Thr Leu Val 340 345 350 Leu Phe Ile Ile Met Ala Leu Leu Trp Phe Ser Arg Asp Pro Gly Phe 355 360 365 Val Pro Gly Trp Ser Ala Leu Phe Ser Glu Tyr Pro Gly Phe Ala Thr 370 375 380 Asp Ser Thr Val Ala Leu Leu Ile Gly Leu Leu Phe Phe Leu Ile Pro 385 390 395 400 Ala Lys Thr Leu Thr Lys Thr Thr Pro Thr Gly Glu Ile Val Ala Phe 405 410 415 Asp Tyr Ser Pro Leu Ile Thr Trp Lys Glu Phe Gln Ser Phe Met Pro 420 425 430 Trp Asp Ile Ala Ile Leu Val Gly Gly Gly Phe Ala Leu Ala Asp Gly 435 440 445 Cys Glu Glu Ser Gly Leu Ser Lys Trp Ile Gly Asn Lys Leu Ser Pro 450 455 460 Leu Gly Ser Leu Pro Ala Trp Leu Ile Ile Leu Ile Ser Ser Leu Met 465 470 475 480 Val Thr Ser Leu Thr Glu Val Ala Ser Asn Pro Ala Thr Ile Thr Leu 485 490 495 Phe Leu Pro Ile Leu Ser Pro Leu Ala Glu Ala Ile His Val Asn Pro 500 505 510 Leu Tyr Ile Leu Ile Pro Ser Thr Leu Cys Thr Ser Phe Ala Phe Leu 515 520 525 Leu Pro Val Ala Asn Pro Pro Asn Ala Ile Val Phe Ser Tyr Gly His 530 535 540 Leu Lys Val Ile Asp Met Val Lys Ala Gly Leu Gly Val Asn Ile Val 545 550 555 560 Gly Val Ala Val Val Met Leu Gly Ile Cys Thr Trp Ile Val Pro Met 565 570 575 Phe Asp Leu Tyr Thr Tyr Pro Ser Trp Ala Pro Ala Met Ser Asn Glu 580 585 590 Thr Met Pro 595 46224PRTHomo Sapiens 46Arg Thr Met Lys Phe Phe Ser Tyr Ile Leu Val Tyr Arg Arg Phe Leu 1 5 10 15 Phe Val Val Phe Thr Val Leu Val Leu Leu Pro Leu Pro Ile Val Leu 20 25 30 His Thr Lys Glu Ala Glu Cys Ala Tyr Thr Leu Phe Val Val Ala Thr 35 40 45 Phe Trp Leu Thr Glu Ala Leu Pro Leu Ser Val Thr Ala Leu Leu Pro 50 55 60 Ser Leu Met Leu Pro Met Phe Gly Ile Met Pro Ser Lys Lys Val Ala 65 70 75 80 Ser Ala Tyr Phe Lys Asp Phe His Leu Leu Leu Ile Gly Val Ile Cys 85 90 95 Leu Ala Thr Ser Ile Glu Lys Trp Asn Leu His Lys Arg Ile Ala Leu 100 105 110 Lys Met Val Met Met Val Gly Val Asn Pro Ala Trp Leu Thr Leu Gly 115 120 125 Phe Met Ser Ser Thr Ala Phe Leu Ser Met Trp Leu Ser Asn Thr Ser 130 135 140 Thr Ala Ala Met Val Met Pro Ile Ala Glu Ala Val Val Gln Gln Ile 145 150 155 160 Ile Asn Ala Glu Ala Glu Val Glu Ala Thr Gln Met Thr Tyr Phe Asn 165 170 175 Gly Ser Thr Asn His Gly Leu Glu Ile Asp Glu Ser Val Asn Gly His 180 185 190 Glu Ile Asn Glu Arg Lys Glu Lys Thr Lys Pro Val Pro Gly Tyr Asn 195 200 205 Asn Asp Thr Gly Lys Ile Ser Ser Lys Val Glu Leu Glu Lys Thr Val 210 215 220 4788PRTHomo Sapiens 47Ala Thr Gln Met Thr Tyr Phe Asn Gly Ser Thr Asn His Gly Leu Glu 1 5 10 15 Ile Asp Glu Ser Val Asn Gly His Glu Ile Asn Glu Arg Lys Glu Lys 20 25 30 Thr Lys Pro Val Pro Gly Tyr Asn Asn Asp Thr Gly Lys Ile Ser Ser 35 40 45 Lys Val Glu Leu Glu Lys His Trp Lys Leu Ala Val Gln Asp Gly Ser 50 55 60 Pro Ser Pro Ser Val His Ser Val Ser Gln Leu Ala Ala Gln Gly Lys 65 70 75 80 Glu Lys Val Glu Gly Ile Cys Thr 85 48112PRTHomo Sapiens 48His Gly Leu Glu Ile Asp Glu Ser Val Asn Gly His Glu Ile Asn Glu 1 5 10 15 Arg Lys Glu Lys Thr Lys Pro Val Pro Gly Tyr Asn Asn Asp Thr Gly 20 25 30 Lys Ile Ser Ser Lys Val Glu Leu Glu Lys Asn Ser Gly Met Arg Thr 35 40 45 Lys Tyr Arg Thr Lys Lys Gly His Val Thr Arg Lys Leu Thr Cys Leu 50 55 60 Cys Ile Ala Tyr Ser Ser Thr Ile Gly Gly Leu Thr Thr Ile Thr Gly 65 70 75 80 Thr Ser Thr Asn Leu Ile Phe Ala Glu Tyr Phe Asn Thr Phe His Pro 85 90 95 His Arg Arg Gly Asp Arg Thr Arg His Val His Gln Glu Ala Glu Ile 100 105 110 4921DNAArtificial SequenceOligonucleotide 49ccagctttaa ccatgtcaat g 215021DNAArtificial SequenceOligonucleotide 50cagatggttg tgaggagtct g 21513311DNAHomo Sapiens 51tgctaatgct tttggtacaa atggatgtgg aatataattg aatattttct tgtttaaggg 60gagcatgaag aggtgttgag gttatgtcaa gcatctggca cagctgaagg cagatggaaa 120tatttacaag tacgcaattt gagactaaga tattgttatc attctcctat tgaagacaag 180agcaatagta aaacacatca ggtcaggggg ttaaagacct gtgataaacc acttccgata 240agttggaaac gtgtgtctat attttcatat ctgtatatat ataatggtaa agaaagacac 300cttcgtaacc cgcattttcc aaagagagga atcacaggga gatgtacagc aatggggcca 360tttaagagtt ctgtgttcat cttgattctt caccttctag aaggggccct gagtaattca 420ctcattcagc tgaacaacaa tggctatgaa ggcattgtcg ttgcaatcga ccccaatgtg 480ccagaagatg aaacactcat tcaacaaata aaggacatgg tgacccaggc atctctgtat 540ctgtttgaag ctacaggaaa gcgattttat ttcaaaaatg ttgccatttt gattcctgaa 600acatggaaga caaaggctga ctatgtgaga ccaaaacttg agacctacaa aaatgctgat 660gttctggttg ctgagtctac tcctccaggt aatgatgaac cctacactga gcagatgggc 720aactgtggag agaagggtga aaggatccac ctcactcctg atttcattgc aggaaaaaag 780ttagctgaat atggaccaca aggtaaggca tttgtccatg agtgggctca tctacgatgg 840ggagtatttg acgagtacaa taatgatgag aaattctact tatccaatgg aagaatacaa 900gcagtaagat gttcagcagg tattactggt acaaatgtag taaagaagtg tcagggaggc 960agctgttaca ccaaaagatg cacattcaat aaagttacag gactctatga aaaaggatgt 1020gagtttgttc tccaatcccg ccagacggag aaggcttcta taatgtttgc acaacatgtt 1080gattctatag ttgaattctg tacagaacaa aaccacaaca aagaagctcc aaacaagcaa 1140aatcaaaaat gcaatctccg aagcacatgg gaagtgatcc gtgattctga ggactttaag 1200aaaaccactc ctatgacaac acagccacca aatcccacct tctcattgct gcagattgga 1260caaagaattg tgtgtttagt ccttgacaaa tctggaagca tggcgactgg taaccgcctc 1320aatcgactga atcaagcagg ccagcttttc ctgctgcaga cagttgagct ggggtcctgg 1380gttgggatgg tgacatttga cagtgctgcc catgtacaaa gtgaactcat acagataaac 1440agtggcagtg acagggacac actcgccaaa agattacctg cagcagcttc aggagggacg 1500tccatctgca gcgggcttcg atcggcattt actgtgatta ggaagaaata tccaactgat 1560ggatctgaaa ttgtgctgct gacggatggg gaagacaaca ctataagtgg gtgctttaac 1620gaggtcaaac aaagtggtgc catcatccac acagtcgctt tggggccctc tgcagctcaa 1680gaactagagg agctgtccaa aatgacagga ggtttacaga catatgcttc agatcaagtt 1740cagaacaatg gcctcattga tgcttttggg gccctttcat caggaaatgg agctgtctct 1800cagcgctcca tccagcttga gagtaaggga ttaaccctcc agaacagcca gtggatgaat 1860ggcacagtga tcgtggacag caccgtggga aaggacactt tgtttcttat cacctggaca 1920acgcagcctc cccaaatcct tctctgggat cccagtggac agaagcaagg tggctttgta 1980gtggacaaaa acaccaaaat ggcctacctc caaatcccag gcattgctaa ggttggcact 2040tggaaataca gtctgcaagc aagctcacaa accttgaccc tgactgtcac gtcccgtgcg 2100tccaatgcta ccctgcctcc aattacagtg acttccaaaa cgaacaagga caccagcaaa 2160ttccccagcc ctctggtagt ttatgcaaat attcgccaag gagcctcccc aattctcagg 2220gccagtgtca cagccctgat tgaatcagtg aatggaaaaa cagttacctt ggaactactg 2280gataatggag caggtgctga tgctactaag gatgacggtg tctactcaag gtatttcaca 2340acttatgaca cgaatggtag atacagtgta aaagtgcggg ctctgggagg agttaacgca 2400gccagacgga gagtgatacc ccagcagagt ggagcactgt acatacctgg ctggattgag 2460aatgatgaaa tacaatggaa tccaccaaga cctgaaatta ataaggatga tgttcaacac 2520aagcaagtgt gtttcagcag aacatcctcg ggaggctcat ttgtggcttc tgatgtccca 2580aatgctccca tacctgatct cttcccacct ggccaaatca ccgacctgaa ggcggaaatt 2640cacgggggca gtctcattaa tctgacttgg acagctcctg gggatgatta tgaccatgga 2700acagctcaca agtatatcat tcgaataagt acaagtattc ttgatctcag agacaagttc 2760aatgaatctc ttcaagtgaa tactactgct ctcatcccaa aggaagccaa ctctgaggaa 2820gtctttttgt ttaaaccaga aaacattact tttgaaaatg gcacagatct tttcattgct 2880attcaggctg ttgataaggt cgatctgaaa tcagaaatat ccaacattgc acgagtatct 2940ttgtttattc ctccacagac tccgccagag acacctagtc ctgatgaaac gtctgctcct 3000tgtcctaata ttcatatcaa cagcaccatt cctggcattc acattttaaa aattatgtgg 3060aagtggatag gagaactgca gctgtcaata gcctagggct gaatttttgt cagataaata 3120aaataaatca ttcatccttt ttttgattat aaaattttct aaaatgtatt ttagacttcc 3180tgtagggggc gatatactaa atgtatatag tacatttata ctaaatgtat tcctgtaggg 3240ggcgatatac taaatgtatt ttagacttcc tgtagggggc gataaaataa aatgctaaac 3300aactgggtaa a 3311523067DNAHomo Sapiens 52aattaaatta tgagaattaa aaagacaaca ttgagcagag atgaaaaagg aagggaggaa 60aaggtggaaa agaaaagaag acaagaagcg agtagtggtc tctaacttgc tctttgaagg 120atggtctcac aaagagaacc ccaacagaca tcatcgtggg aatcaaatca agaccagcaa 180gtacaccgtg ttgtccttcg tccccaaaaa catttttgag cagctacacc ggtttgccaa 240tctctatttt gtgggcattg cggttctgaa ttttatccct gtggtcaatg ctttccagcc 300tgaggtgagc atgataccaa tctgtgttat cctggcagtc actgccatca aggacgcttg 360ggaagacctc cggaggtaca aatcggataa agtcatcaat aaccgagagt gcctcatcta 420cagcagaaaa gagcagacct atgtgcagaa gtgctggaag gatgtgcgtg tgggagactt 480catccaaatg aaatgcaatg agattgtccc agcagacata ctcctccttt tttcctctga 540ccccaatggg atatgccatc tggaaactgc cagcttggat ggagagacaa acctcaagca 600aagacgtgtc gtgaagggct tctcacagca ggaggtacag ttcgaaccag agcttttcca 660caataccatc gtgtgtgaga aacccaacaa ccacctcaac aaatttaagg gttatatgga 720gcatcctgac cagaccagga ctggctttgg ctgtgagagt cttctgcttc gaggctgcac 780catcagaaac accgagatgg ctgttggcat tgtcatctat gcaggccatg agacgaaagc 840catgctgaac aacagtggcc cccggtacaa acgcagcaag attgagcggc gcatgaatat 900agacatcttc ttctgcattg ggatcctcat cctcatgtgc cttattggag ctgtaggtca 960cagcatctgg aatgggacct ttgaagaaca ccctcccttc gatgtgccag atgccaatgg 1020cagcttcctt cccagtgccc ttgggggctt ctacatgttc ctcacaatga tcatcctgct 1080ccaggtgctg atccccatct ctttgtatgt ctccattgag ctggtgaagc tcgggcaagt 1140gttcttcttg agcaatgacc ttgacctgta tgatgaagag accgatttat ccattcaatg 1200tcgagccctc aacatcgcag aggacttggg ccagatccag tacatcttct ccgataagac 1260ggggaccctg acagagaaca agatggtgtt ccgacgttgc accatcatgg gcagcgagta 1320ttctcaccaa gaaaatggta tagaagctcc caagggctcc atccctcttt ctaaaaggaa 1380ataccctgct ctcctaagaa acgaggagat aaaagacatt ctcctggctc tcttagaggc 1440tgtgtggcat ttccacaagt tgcttcctgt atccctgtgg tcttccttgt cacagatcag 1500ggctgttcca attacttgta aactttcatt tgtttacaaa ggttagaagt tatcccatat 1560gtggttcccc ttcagctgat ctttgtctgg tgccagacaa agcactttat gagacgagtt 1620ttttatctgt cagcaatgga ttggagacat ttcccaattg tgtgccagtc acacaaccaa 1680ggcttaggaa tttctcaggc caccttacct gacatgtcag ggcaggtctg tgtctaggtg 1740catggtcaga tttaatacat ccagaagatg tcttctattc taacagatct cttagcttgt 1800cactgaggca aagttttgat ttaggagata gggctataaa atgcctggac tgttaccttg 1860catggactga atatgactca taaaactgat ctgattcctt cagccatcat ctgcccaact 1920tggttcccct ccccaccccc ccacaacaca cacacacact ttctaagaaa agaaaagaaa 1980ttcttttttt tcaatacttt aagttctggg atacatgtgc agaatgtgca ggtttgttac 2040ataggtatac atgtgtcatg gtggtttgca gcacccacca acccatcatc taccttaggt 2100atttctccta atgctatccc tcccctagcc cccaaccccc cgatgggctc cagtgtgtga 2160tgttcccctc catgtccatg tgttctcatt gttcaattcc cacttatgag tgagaacatg 2220cagtatttgg ttttctgttc ttgtgttagt ttgctgatgg tttcctgttc atccgtgtcc 2280ctgcaaagga catgaactca tcctttttta tggctgcata atattccatg gtgtatatgt 2340gccacatttt ctttatccag tctatcgctg atgggcactg gggttggttc caagtctttg 2400ctattgtgaa cagtgctgca ataaacttac atgtgcatgt gtctttagta gaatgattta 2460taatcctttg ggtatatacc cagtaatggg attgctggtc aaatggtatt tctggttcta 2520gatccttgag gaatctttgt cttccacaat ggttgaacta atttgtactc ccaccaacag 2580tgtaaaagta ttcctgtttc tctacatcct cttcagcatc tgttgtgtcc tgacatttta 2640atgatcacta ttctcactgg cgtgagatgt tatctcattg tggttttgat ttgcatttct 2700ctaatgacca gtaatgatga gctttttttc atatgtttgt tggctgcata aatgtcttct 2760tttgagaagt gtctgttcat atccttcacc cattttttga agaaaacaaa ctcttaagag 2820agcagtattc attcttttga gtgtgaggga tggagaaaga gaaagatgga gagagtatta 2880taagcagctg tatccccttt gccatggtga tagcagacca ttcacatggg agcttctggt 2940ctctttgtaa taataataag agccacatta ccagtactta gagtatgcta gttattttaa 3000cacattgtat cattaaatct tcaaaacatc cctatgagtt agaaacctaa aaaaaaaaaa 3060aaaaaaa 3067532778DNAHomo Sapiens 53ctcattttga tgtctagaat caggggatcc aggatcatca ccaaggtcat tttcccaggt 60atggaggggt ctttctgctt ctttcttgtc atgcacagct gctgaggaag gggctgggag 120taaagacagt gaaatgggga ggaggagtcc attcaaaccg agaaacaaag tgtttggttt 180ttcttacccc tggtgtagaa gctaccaacc ttttccaaga aagagggcct ggcccccttc 240tcgggtctgg ctgggtgcct gctgtgcctc tctggcctcc cctccgaagg gcaccattcc 300ctcgggtgag tactaccggc ctgcaccgtc ttccagtggg gacagcctga gaagagagtc 360tggggcctta cttcagtacc ttccttcact ggcctcaccc tgtgcaaatc atgccacacg 420ctgcagcctc cttttcccta tctataaaat aaaaatgacc ctgctctatc tcactgggct 480ggcaagaaca cactgttgtt gccttgcaga cagatgtgct gaggctgtag aaagtgcttt 540ttatttggtt gggagcttgt gcataaatgc gagaggggct gcacatctga cggactagag 600gtgactcatg gctgaaccgg aacaggacat cggggagaag ccagcagcca tgctgaactc 660tccacagggc cctgtgaaaa gctcttcacc tcctctgccc tctggatcta gtgaagccta 720ttcatccttc agatgtcagc tcaaataatc aaccttcatg gaggcctccc ttgaccccta 780acatgctttc aaagtactgt gtatttcaca ttcatcatgc cccgacaact gtgatttccc 840atttattaat atctgtctct tctgctggcc tgcaaactcc aggagcacag agacatcttt 900gggatttttg aacatgattt ccccagggct tagcccagtg cctggtgcaa agcaggcttt 960caacatgttc agtggatatt gtaagaaaga aagaaataca caaaaggcct ggcatatgca 1020aagcactcta aatattcact cctttccctt ccctctgggt gagaaaattt ctccttataa 1080agacaccctc ctaactgtat ctctgctaga gaactgaaga cataaagcac tctgtgccaa 1140aaatatttaa gtaaaaactt gagctaagca cagagattat aaatatttct tccccagatt 1200acgcaccatt taaaaatact gtctcagctc cttttcatga tttgggtggt gattaaagaa 1260aattactctt caagactgaa agtcattact gcccttttcc tgacttgcct tttcccttga 1320gaaggggagg ataagctgca gggcaggaag tggaagtggg gcatccttgt cctttgtctg 1380gcagacagcc aactggtcag gtactgctcc ttctcaactc tttcctgatt cccaggtgaa 1440tataaacaag aaggcacaaa tccacacttg ccaacaacgg acccaagtga taacaagaaa 1500cccagtgaca cctgtctagg tgaagactca gcccctatgt gaccaggttg caaagccaaa 1560ctgaccatct gctttccatt tggactttta gttcatactg tatcttctca ggacagttaa 1620gttggaatac aatgccactg tcctgaaaga tggtagaatt atcctatttc tggaggagtg 1680ggggtggtgg gtaggaatct caagagcgat ttgctcctct gcacaatagc ttctttaagg 1740acaccagggc ccccagggct atacatttcc ctgaagcttt ccagataagc aacaaggtat 1800gagcacctgc tatgtattgc ccaagggtga tgtgtttaaa tatccattgc atattttaaa 1860tccttggctg gcttaaagct gcaagctttc tgtcttcagt ggatataatg ggggcataca 1920tcccagagct tgcccaacac tccaagaaaa gaaccctcag ctaatgcaaa gtgtgtatgt 1980gcccatgaaa gctccatgtc tacttaacat tcagttttta ggattattta tgctgtaata 2040atagatatga aaatctctga caggtatttt gtttccttta caaactgtat ttgaatttat 2100gggtgattta gagcttgtgt ttaaagtcag aattcagaac cccaaagaaa atgacttcat 2160tgaaattgaa ctgaagagac aagaactgag ttaccaaaac ctactaaacg tgagttgctg 2220tgaactgggg attaaaccag aacgagtgga gaagatcaga aagctaccaa acacactgct 2280cagaaaggac aaagacattc gaagactgcg ggactttcag gaagtggaac tcattttaat 2340gaaaaatgga agctccagat tgacagaata tgtgccatct ctgacagaaa ggccctgcta 2400tgatagcaaa gctgcaaaaa tgacttatta aatactccca ggaatggccg cgcatggtgg 2460ctcaccccct gtaatcccag cactttggga agccaaggtg ggcggatcac ctgaggtcag 2520gagttctaga ccagcctggc caacatatag tgaaacccag tctctactaa aaaaaataca 2580aaaattagct aggtgtggtg gcgcacacct gtagtagtcc cagctacatg ggaagctgag 2640gcaggagaat cacctgaacc caggaggcag aggttgcagt gagctgagat tgcgccactg 2700cactccagcc tggcgacaga gcaagactct gtctctcaaa ataaataaat aaataaataa 2760ataaataaat aaataatc 2778541646DNAHomo Sapiens 54gcccgggaga ggagaggagc gggccgagga ctccagcgtg cccaggtctg gcatcctgca 60cttgctgccc tctgacacct gggaagatgg ccggcccgtg gaccttcacc cttctctgtg 120gtttgctggc agccaccttg atccaagcca ccctcagtcc cactgcagtt ctcatcctcg 180gcccaaaagt catcaaagaa aagctgacac aggagctgaa ggaccacaac gccaccagca 240tcctgcagca gctgccgctg ctcagtgcca tgcgggaaaa gccagccgga ggcatccctg 300tgctgggcag cctggtgaac accgtcctga agcacatcat ctggctgaag gtcatcacag 360ctaacatcct ccagctgcag gtgaagccct cggccaatga ccaggagctg ctagtcaaga 420tccccctgga catggtggct ggattcaaca cgcccctggt caagaccatc gtggagttcc 480acatgacgac tgaggcccaa gccaccatcc gcatggacac cagtgcaagt ggccccaccc 540gcctggtcct cagtgactgt gccaccagcc atgggagcct gcgcatccaa ctgctgcata 600agctctcctt cctggtgaac gccttagcta agcaggtcat

gaacctccta gtgccatccc 660tgcccaatct agtgaaaaac cagctgtgtc ccgtgatcga ggcttccttc aatggcatgt 720atgcagacct cctgcagctg gtgaaggtgc ccatttccct cagcattgac cgtctggagt 780ttgaccttct gtatcctgcc atcaagggtg acaccattca gctctacctg ggggccaagt 840tgttggactc acagggaaag gtgaccaagt ggttcaataa ctctgcagct tccctgacaa 900tgcccaccct ggacaacatc ccgttcagcc tcatcgtgag tcaggacgtg gtgaaagctg 960cagtggctgc tgtgctctct ccagaagaat tcatggtcct gttggactct gtgcttcctg 1020agagtgccca tcggctgaag tcaagcatcg ggctgatcaa tgaaaaggct gcagataagc 1080tgggatctac ccagatcgtg aagatcctaa ctcaggacac tcccgagttt tttatagacc 1140aaggccatgc caaggtggcc caactgatcg tgctggaagt gtttccctcc agtgaagccc 1200tccgcccttt gttcaccctg ggcatcgaag ccagctcgga agctcagttt tacaccaaag 1260gtgaccaact tatactcaac ttgaataaca tcagctctga tcggatccag ctgatgaact 1320ctgggattgg ctggttccaa cctgatgttc tgaaaaacat catcactgag atcatccact 1380ccatcctgct gccgaaccag aatggcaaat taagatctgg ggtcccagtg tcattggtga 1440aggccttggg attcgaggca gctgagtcct cactgaccaa ggatgccctt gtgcttactc 1500cagcctcctt gtggaaaccc agctctcctg tctcccagtg aagacttgga tggcagccat 1560cagggaaggc tgggtcccag ctgggagtat gggtgtgagc tctatagacc atccctctct 1620gcaatcaata aacacttgcc tgtgat 1646551049DNAHomo Sapiens 55ggagtggggg agagagagga gaccaggaca gctgctgaga cctctaagaa gtccagatac 60taagagcaaa gatgtttcaa actgggggcc tcattgtctt ctacgggctg ttagcccaga 120ccatggccca gtttggaggc ctgcccgtgc ccctggacca gaccctgccc ttgaatgtga 180atccagccct gcccttgagt cccacaggtc ttgcaggaag cttgacaaat gccctcagca 240atggcctgct gtctgggggc ctgttgggca ttctggaaaa ccttccgctc ctggacatcc 300tgaagcctgg aggaggtact tctggtggcc tccttggggg actgcttgga aaagtgacgt 360cagtgattcc tggcctgaac aacatcattg acataaaggt cactgacccc cagctgctgg 420aacttggcct tgtgcagagc cctgatggcc accgtctcta tgtcaccatc cctctcggca 480taaagctcca agtgaatacg cccctggtcg gtgcaagtct gttgaggctg gctgtgaagc 540tggacatcac tgcagaaatc ttagctgtga gagataagca ggagaggatc cacctggtcc 600ttggtgactg cacccattcc cctggaagcc tgcaaatttc tctgcttgat ggacttggcc 660ccctccccat tcaaggtctt ctggacagcc tcacagggat cttgaataaa gtcctgcctg 720agttggttca gggcaacgtg tgccctctgg tcaatgaggt tctcagaggc ttggacatca 780ccctggtgca tgacattgtt aacatgctga tccacggact acagtttgtc atcaaggtct 840aagccttcca ggaaggggct ggcctctgct gagctgcttc ccagtgctca cagatggctg 900gcccatgtgc tggaagatga cacagttgcc ttctctccga ggaacctgcc ccctctcctt 960tcccaccagg cgtgtgtaac atcccatgtg cctcacctaa taaaatggct cttcttctgc 1020aaaaaaaaaa aaaaaaaaaa aaaaaaaaa 1049564815DNAHomo Sapiens 56gagcagagcc ctttcacaca cctcaggaac acctttcggc tgcccgctcc ccagacacac 60ctgcagccct gcccagccgg ctttgctcac ccactgcttg taaatgcccc agatatgagc 120cagcccaggc cccgctacgt ggtagacaga gccgcatact cccttaccct cttcgacgat 180gagtttgaga agaaggaccg gacataccca gtgggagaga aacttcgcaa tgccttcaga 240tgttcctcag ccaagatcaa agctgtggtg tttgggctgc tgcctgtgct ctcctggctc 300cccaagtaca agattaaaga ctacatcatt cctgacctgc tcggtggact cagcggggga 360tccatccagg tcccacaagg catggcattt gctctgctgg ccaaccttcc tgcagtcaat 420ggcctctact cctccttctt ccccctcctg acctacttct tcctgggggg tgttcaccag 480atggtgccag gtacctttgc cgttatcagc atcctggtgg gtaacatctg tctgcagctg 540gccccagagt cgaaattcca ggtcttcaac aatgccacca atgagagcta tgtggacaca 600gcagccatgg aggctgagag gctgcacgtg tcagctacgc tagcctgcct caccgccatc 660atccagatgg gtctgggctt catgcagttt ggctttgtgg ccatctacct ctccgagtcc 720ttcatccggg gcttcatgac ggccgccggc ctgcagatcc tgatttcggt gctcaagtac 780atcttcggac tgaccatccc ctcctacaca ggcccagggt ccatcgtctt taccttcatt 840gacatttgca aaaacctccc ccacaccaac atcgcctcgc tcatcttcgc tctcatcagc 900ggtgccttcc tggtgctggt gaaggagctc aatgctcgct acatgcacaa gattcgcttc 960cccatcccta cagagatgat tgtggtggtg gtggcaacag ctatctccgg gggctgtaag 1020atgcccaaaa agtatcacat gcagatcgtg ggagaaatcc aacgcgggtt ccccaccccg 1080gtgtcgcctg tggtctcaca gtggaaggac atgataggca cagccttctc cctagccatc 1140gtgagctacg tcatcaacct ggctatgggc cggaccctgg ccaacaagca cggctacgac 1200gtggattcga accaggagat gatcgctctc ggctgcagca acttctttgg ctccttcttt 1260aaaattcatg tcatttgctg tgcgctttct gtcactctgg ctgtggatgg agctggagga 1320aaatcccagg tggccagcct gtgtgtgtct ctggtggtga tgatcaccat gctggtcctg 1380gggatctatc tgtatcctct ccctaagtct gtgctaggag ccctgatcgc tgtcaatctc 1440aagaactccc tcaagcaact caccgacccc tactacctgt ggaggaagag caagctggac 1500tgttgcatct gggtagtgag cttcctctcc tccttcttcc tcagcctgcc ctatggtgtg 1560gcagtgggtg tcgccttctc cgtcctggtc gtggtcttcc agactcagtt tcgaaatggc 1620tatgcactgg cccaggtcat ggacactgac atttatgtga atcccaagac ctataatagg 1680gcccaggata tccaggggat taaaatcatc acgtactgct cccctctcta ctttgccaac 1740tcagagatct tcaggcaaaa ggtcatcgcc aagacaggca tggaccccca gaaagtatta 1800ctagccaagc aaaaatacct caagaagcag gagaagcgga gaatgaggcc cacacaacag 1860aggaggtctc tattcatgaa aaccaagact gtctccctgc aggagctgca gcaggacttt 1920gagaatgcgc cccccaccga ccccaacaac aaccagaccc cggctaacgg caccagcgtg 1980tcctatatca ccttcagccc tgacagctcc tcacctgccc agagtgagcc accagcctcc 2040gctgaggccc ccggcgagcc cagtgacatg ctggccagcg tcccaccctt cgtcaccttc 2100cacaccctca tcctggacat gagtggagtc agcttcgtgg acttgatggg catcaaggcc 2160ctggccaagc tgagctccac ctatgggaag atcggcgtga aggtcttctt ggtgaacatc 2220catgcccagg tgtacaatga cattagccat ggaggcgtct ttgaggatgg gagtctagaa 2280tgcaagcacg tctttcccag catacatgac gcagtcctct ttgcccaggc aaatgctaga 2340gacgtgaccc caggacacaa cttccaaggg gctccagggg atgctgagct ctccttgtac 2400gactcagagg aggacattcg cagctactgg gacttagagc aggagatgtt cgggagcatg 2460tttcacgcag agaccctgac cgccctgtga gggctcagcc agtcctcatg ctgcctacag 2520agtgcctggc acttgggact tccataaagg atgagcctgg ggtcacaggg ggtgtcgggc 2580ggaggaaagt gcatccccca gagcttgggt tcctctctcc tctccccctc tctcctccct 2640tccttccctc cccgcatctc cagagagagc ctctcagcag caggggggtg ctacccttac 2700gggagtgaga gtctggtgag cccactcttc acccgtcagg ccctggccgc aatggacaag 2760cctcctgctc actccacccc acccacatct gccctgtcct tggcagctga aggacacctt 2820gacttccagc ttttacgagt gagccaaaaa cagaaggaca agtacaactg tgctggcctg 2880ctgtacaagc ttcaaaaagt gtcccagagc ccgcacggct cggtgtcaga tggtgtcagg 2940ctgtcacgga catagggata aacttggtta ggactctggc ttgccttccc cagctgcctc 3000aactctgtct ctggcagctc tgcacccagg gaccatgtgc tctccacacc caggagtcta 3060ggccttggta actatgcgcc ccccctccat catccccaag gctgcccaaa ccaccactgc 3120tgtcagcaag cacatcagac tctagcctgg acagtggcca ggaccgtcga gaccaccaga 3180gctacctccc cggggacagc ccactaaggt tctgcctcag cctcctgaaa catcactgcc 3240ctcagaggct gctcccttcc cctggaggct ggctagaaac cccaaagagg gggatgggta 3300gctggcagaa tcatctggca tcctagtaat agataccagt tattctgcac aaaacttttg 3360ggaattcctc tttgcaccca gagactcaga ggggaagagg gtgctagtac caacacaggg 3420aaaacggatg ggacctgggc ccagacagtc ccccttgacc ccagggccca tcagggaaat 3480gcctcccttt ggtaaatctg ccttatcctt ctttacctgg caaagagcca atcatgttaa 3540ctcttcctta tcagcctgtg gcccagagac acaatggggt ccttctgtag gcaaaggtgg 3600aagtcctcca gggatccgct acatccccta actgcatgca gatgtggaaa ggggctgatc 3660cagattgggt cttcctgcac aggaagactc tttaacaccc ttaggacctc aggccatctt 3720ctcctatgaa gatgaaaata ggggttaagt tttccatatg tacaaggagg tattgagagg 3780aaccctactg ttgacttgaa aataaatagg ttccatgtgt aagtgttttg taaaatttca 3840gtggaaatgc acagaaaatc ttctggcctc tcatcactgc ttttctcaag cttcttcagc 3900ttaacaaccc cttccctaac aggttgggct ggcccagcct aggaaaacat ccccatttct 3960aacttcagcc agacctgcgt tgtgtgtctg tgtgttgagt gagctggtca gctaacaagt 4020cttcttagag ttaaaggagg gggtgctggc caagagccaa cacattcttg gcccaggagc 4080attgcttttc tgtgaattca ttatgccatc tggctgccaa tggaactcaa aacttggaag 4140gcgaaggaca atgttatctg ggattcaccg tgcccagcac ccgaagtgcc aaattccagg 4200aggacaagag ccttagccaa tgacaactca ctctccccta ctccacctcc ttccaagtcc 4260agctcaggcc caggaggtgg gagaaggtca cagagcctca ggaatttcca agtcagagtc 4320ccctttgaac caagtatcta gatcccctga ggacttgatg aagtgatcct taacccccaa 4380gtaatcatta acccccagac cagcctcaga actgaaggag attgttgacc cagtgacctg 4440gagttgaggc tcagggagag atctgccaca tgtctgaggg ttgcagagcc cgctgtggag 4500gtaagattgg aaacacatga ggcagaggga agacattgaa gaaaacatct ctgctggaat 4560atttggaaaa gaacactctt ctggacctgg ttgaagcagg aaagatggag gcaaagtagt 4620gaaataatcc agaatttcaa tgcttttgaa tgttcttagt gatactgacc tgtgataata 4680taattcccag ggaggactgg gaaccttatc tcttgagata tttgcataat ttatttaatt 4740taagcctcat tctccttttg ttcattttgg taataaactg gatttgaatt gtgaacaaaa 4800aaaaaaaaaa aaaaa 4815572572DNAHomo Sapiens 57aatgctctaa gacctctcag cacgggcgga agaaactccc ggagagctca cccaaaaaac 60aaggagatcc catctagatt tcttcttgct tttgactcac agctggaagt tagaaaagcc 120tcgatttcat ctttggagag gccaaatggt cttagcctca gtctctgtct ctaaatattc 180caccataaaa cagctgagtt atttatgaat tagaggctat agctcacatt ttcaatcctc 240tatttctttt tttaaatata actttctact ctgatgagag aatgtggttt taatctctct 300ctcacatttt gatgatttag acagactccc cctcttcctc ctagtcaata aacccattga 360tgatctattt cccagcttat ccccaagaaa acttttgaaa ggaaagagta gacccaaaga 420tgttattttc tgctgtttga attttgtctc cccaccccca acttggctag taataaacac 480ttactgaaga agaagcaata agagaaagat atttgtaatc tctccagccc atgatctcgg 540ttttcttaca ctgtgatctt aaaagttacc aaaccaaagt cattttcagt ttgaggcaac 600caaacctttc tactgctgtt gacatcttct tattacagca acaccattct aggagtttcc 660tgagctctcc actggagtcc tctttctgtc gcgggtcaga aattgtccct agatgaatga 720gaaaattatt ttttttaatt taagtcctaa atatagttaa aataaataat gttttagtaa 780aatgatacac tatctctgtg aaatagcctc acccctacat gtggatagaa ggaaatgaaa 840aaataattgc tttgacattg tctatatggt actttgtaaa gtcatgctta agtacaaatt 900ccatgaaaag ctcactgatc ctaattcttt ccctttgagg tctctatggc tctgattgta 960catgatagta agtgtaagcc atgtaaaaag taaataatgt ctgggcacag tggctcacgc 1020ctgtaatcct agcactttgg gaggctgagg aggaaggatc acttgagccc agaagttcga 1080gactagcctg ggcaacatgg agaagccctg tctctacaaa atacagagag aaaaaatcag 1140ccagtcatgg tggcatacac ctgtagtccc agcattccgg gaggctgagg tgggaggatc 1200acttgagccc agggaggttg gggctgcagt gagccatgat cacaccactg cactccagcc 1260aggtgacata gcgagatcct gtctaaaaaa ataaaaaata aataatggaa cacagcaagt 1320cctaggaagt aggttaaaac taattcttta aaaaaaaaaa aaagttgagc ctgaattaaa 1380tgtaatgttt ccaagtgaca ggtatccaca tttgcatggt tacaagccac tgccagttgg 1440cagtagcact ttcctggcac tgtggtcggt tttgttttgt tttgctttgt ttagagacgg 1500ggtctcactt tccaggctgg cctcaaactc ctgcactcaa gcaattcttc taccctggcc 1560tcccaagtag ctggaattac aggtgtgcgc catcacaact agctggtggt cagttttgtt 1620actctgagag ctgttcactt ctctgaattc acctagagtg gttggaccat cagatgtttg 1680ggcaaaactg aaagctcttt gcaaccacac accttccctg agcttacatc actgcccttt 1740tgagcagaaa gtctaaattc cttccaagac agtagaattc catcccagta ccaaagccag 1800ataggccccc taggaaactg aggtaagagc agtctctaaa aactacccac agcagcattg 1860gtgcagggga acttggccat taggttatta tttgagagga aagtcctcac atcaatagta 1920catatgaaag tgacctccaa ggggattggt gaatactcat aaggatcttc aggctgaaca 1980gactatgtct ggggaaagaa cggattatgc cccattaaat aacaagttgt gttcaagagt 2040cagagcagtg agctcagagg cccttctcac tgagacagca acatttaaac caaaccagag 2100gaagtatttg tggaactcac tgcctcagtt tgggtaaagg atgagcagac aagtcaacta 2160aagaaaaaag aaaagcaagg aggagggttg agcaatctag agcatggagt ttgttaagtg 2220ctctctggat ttgagttgaa gagcatccat ttgagttgaa ggccacaggg cacaatgagc 2280tctcccttct accaccagaa agtccctggt caggtctcag gtagtgcggt gtggctcagc 2340tgggttttta attagcgcat tctctatcca acatttaatt gtttgaaagc ctccatatag 2400ttagattgtg ctttgtaatt ttgttgttgt tgctctatct tattgtatat gcattgagta 2460ttaacctgaa tgttttgtta cttaaatatt aaaaacactg ttatcctaca aaaaaaccct 2520caaaggctga aaataaagaa ggaagatgga gacaccctct gggggtcctc tc 2572581324DNAHomo Sapiens 58ctttgcagtg gatgcccttg gcagggtgag cccacaagga gcaatggagc agggcagcgg 60ccgcttggag gacttccctg tcaatgtgtt ctccgtcact ccttacacac ccagcaccgc 120tgacatccag gtgtccgatg atgacaaggc gggggccacc ttgctcttct caggcatctt 180tctgggactg gtggggatca cattcactgt catgggctgg atcaaatacc aaggtgtctc 240ccactttgaa tggacccagc tccttgggcc cgtcctgctg tcagttgggg tgacattcat 300cctgattgct gtgtgcaagt tcaaaatgct ctcctgccag ttgtgcaaag aaagtgagga 360aagggtcccg gactcggaac agacaccagg aggaccatca tttgttttca ctggcatcaa 420ccaacccatc accttccatg gggccactgt ggtgcagtac atccctcctc cttatggttc 480tccagagcct atggggataa ataccagcta cctgcagtct gtggtgagcc cctgcggcct 540cataacctct ggaggggcag cagccgccat gtcaagtcct cctcaatact acaccatcta 600ccctcaagat aactctgcat ttgtggttga tgagggctgc ctttctttca cggacggtgg 660aaatcacagg cccaatcctg atgttgacca gctagaagag acacagctgg aagaggaggc 720ctgtgcctgc ttctctcctc ccccttatga agaaatatac tctctccctc gctagaggct 780attctgatat aataacacaa tgctcagctc agggagcaag tgtttccgtc attgttacct 840gacaaccgtg gtgttctatg ttgtaacctt cagaagttac agcagcgccc aggcagcctg 900acagagatca ttcaaggggg gaaaggggaa gtgggaggtg caatttctca gattggtaaa 960aattaggctg ggctggggaa attctcctcc ggaacagttt caaattccct cgggtaagaa 1020atctcctgta taaggttcag gagcaggaat ttcacttttt catccaccac cctccccctt 1080ctctgtagga aggcattggt ggctcaattt taaccccagc agccaatgga aaaatcacga 1140cttctgagac tttgggagtt tccacagagg tgagagtcgg gtgggaagga agcagggaag 1200agaaagcagg cccagctgga gatttcctgg tggctgtcct tggccccaaa gcagactcac 1260taatcccaaa caactcagct gccatctggc ctctctgagg actctgggta ccttaaagac 1320tata 132459683DNAHomo Sapiens 59caggaaagtt cgtgctgcta ggcagaggaa ctgcagcttg ttggcaggtg aagggagcct 60gtttagctgt gtccagcaac aacttacgtg gtcctgcttg tgttccaggt gaagcgtctg 120gccgccgagc agaggaatca agacctgctc attctttcct cgggggatcc atccagcaat 180gacatcatct catgctgcca caaggacccc aagtctgggc tgctggggac cagccacgct 240ccccactgct cattccttca tcctagagac attctgactc tcctccgact gcgctgtgca 300caggcgtgac aagctctttt acatctcagt ctgcacaact tcaggcactt agcagattga 360tatgcatcca acaaatattg attgaatatc tgctaaatac ccagtaatgt ttcatgagtg 420attgggtgaa taaaggaatg ctggttcctt ctggccatat taactcctgc acaatactaa 480gaaaaataaa ttgcactagc tgtggaataa tgtgaatccc aatgtcatct attgaaatat 540tacctgacta ttaagaggta tttatttttg tatcttttct agcaaagtaa ataaaattct 600taatacagca tatcccctta ttcacggggg gtatgttcca agacccccgg tggatgcctg 660aaactatgga taataccaga tcc 68360914PRTHomo Sapiens 60Met Gly Pro Phe Lys Ser Ser Val Phe Ile Leu Ile Leu His Leu Leu 1 5 10 15 Glu Gly Ala Leu Ser Asn Ser Leu Ile Gln Leu Asn Asn Asn Gly Tyr 20 25 30 Glu Gly Ile Val Val Ala Ile Asp Pro Asn Val Pro Glu Asp Glu Thr 35 40 45 Leu Ile Gln Gln Ile Lys Asp Met Val Thr Gln Ala Ser Leu Tyr Leu 50 55 60 Phe Glu Ala Thr Gly Lys Arg Phe Tyr Phe Lys Asn Val Ala Ile Leu 65 70 75 80 Ile Pro Glu Thr Trp Lys Thr Lys Ala Asp Tyr Val Arg Pro Lys Leu 85 90 95 Glu Thr Tyr Lys Asn Ala Asp Val Leu Val Ala Glu Ser Thr Pro Pro 100 105 110 Gly Asn Asp Glu Pro Tyr Thr Glu Gln Met Gly Asn Cys Gly Glu Lys 115 120 125 Gly Glu Arg Ile His Leu Thr Pro Asp Phe Ile Ala Gly Lys Lys Leu 130 135 140 Ala Glu Tyr Gly Pro Gln Gly Lys Ala Phe Val His Glu Trp Ala His 145 150 155 160 Leu Arg Trp Gly Val Phe Asp Glu Tyr Asn Asn Asp Glu Lys Phe Tyr 165 170 175 Leu Ser Asn Gly Arg Ile Gln Ala Val Arg Cys Ser Ala Gly Ile Thr 180 185 190 Gly Thr Asn Val Val Lys Lys Cys Gln Gly Gly Ser Cys Tyr Thr Lys 195 200 205 Arg Cys Thr Phe Asn Lys Val Thr Gly Leu Tyr Glu Lys Gly Cys Glu 210 215 220 Phe Val Leu Gln Ser Arg Gln Thr Glu Lys Ala Ser Ile Met Phe Ala 225 230 235 240 Gln His Val Asp Ser Ile Val Glu Phe Cys Thr Glu Gln Asn His Asn 245 250 255 Lys Glu Ala Pro Asn Lys Gln Asn Gln Lys Cys Asn Leu Arg Ser Thr 260 265 270 Trp Glu Val Ile Arg Asp Ser Glu Asp Phe Lys Lys Thr Thr Pro Met 275 280 285 Thr Thr Gln Pro Pro Asn Pro Thr Phe Ser Leu Leu Gln Ile Gly Gln 290 295 300 Arg Ile Val Cys Leu Val Leu Asp Lys Ser Gly Ser Met Ala Thr Gly 305 310 315 320 Asn Arg Leu Asn Arg Leu Asn Gln Ala Gly Gln Leu Phe Leu Leu Gln 325 330 335 Thr Val Glu Leu Gly Ser Trp Val Gly Met Val Thr Phe Asp Ser Ala 340 345 350 Ala His Val Gln Ser Glu Leu Ile Gln Ile Asn Ser Gly Ser Asp Arg 355 360 365 Asp Thr Leu Ala Lys Arg Leu Pro Ala Ala Ala Ser Gly Gly Thr Ser 370 375 380 Ile Cys Ser Gly Leu Arg Ser Ala Phe Thr Val Ile Arg Lys Lys Tyr 385 390 395 400 Pro Thr Asp Gly Ser Glu Ile Val Leu Leu Thr Asp Gly Glu Asp Asn 405 410 415 Thr Ile Ser Gly Cys Phe Asn Glu Val Lys Gln Ser Gly Ala Ile Ile 420 425 430 His Thr Val Ala Leu Gly Pro Ser Ala Ala Gln Glu Leu Glu Glu Leu 435 440 445 Ser Lys Met Thr Gly Gly Leu Gln Thr Tyr Ala Ser Asp Gln Val Gln 450 455 460 Asn Asn Gly Leu Ile Asp Ala Phe Gly Ala Leu Ser Ser Gly Asn Gly 465 470 475 480 Ala Val Ser Gln Arg Ser Ile Gln Leu Glu Ser Lys Gly Leu Thr Leu 485 490 495 Gln Asn Ser Gln Trp Met Asn Gly Thr Val Ile Val Asp Ser Thr

Val 500 505 510 Gly Lys Asp Thr Leu Phe Leu Ile Thr Trp Thr Thr Gln Pro Pro Gln 515 520 525 Ile Leu Leu Trp Asp Pro Ser Gly Gln Lys Gln Gly Gly Phe Val Val 530 535 540 Asp Lys Asn Thr Lys Met Ala Tyr Leu Gln Ile Pro Gly Ile Ala Lys 545 550 555 560 Val Gly Thr Trp Lys Tyr Ser Leu Gln Ala Ser Ser Gln Thr Leu Thr 565 570 575 Leu Thr Val Thr Ser Arg Ala Ser Asn Ala Thr Leu Pro Pro Ile Thr 580 585 590 Val Thr Ser Lys Thr Asn Lys Asp Thr Ser Lys Phe Pro Ser Pro Leu 595 600 605 Val Val Tyr Ala Asn Ile Arg Gln Gly Ala Ser Pro Ile Leu Arg Ala 610 615 620 Ser Val Thr Ala Leu Ile Glu Ser Val Asn Gly Lys Thr Val Thr Leu 625 630 635 640 Glu Leu Leu Asp Asn Gly Ala Gly Ala Asp Ala Thr Lys Asp Asp Gly 645 650 655 Val Tyr Ser Arg Tyr Phe Thr Thr Tyr Asp Thr Asn Gly Arg Tyr Ser 660 665 670 Val Lys Val Arg Ala Leu Gly Gly Val Asn Ala Ala Arg Arg Arg Val 675 680 685 Ile Pro Gln Gln Ser Gly Ala Leu Tyr Ile Pro Gly Trp Ile Glu Asn 690 695 700 Asp Glu Ile Gln Trp Asn Pro Pro Arg Pro Glu Ile Asn Lys Asp Asp 705 710 715 720 Val Gln His Lys Gln Val Cys Phe Ser Arg Thr Ser Ser Gly Gly Ser 725 730 735 Phe Val Ala Ser Asp Val Pro Asn Ala Pro Ile Pro Asp Leu Phe Pro 740 745 750 Pro Gly Gln Ile Thr Asp Leu Lys Ala Glu Ile His Gly Gly Ser Leu 755 760 765 Ile Asn Leu Thr Trp Thr Ala Pro Gly Asp Asp Tyr Asp His Gly Thr 770 775 780 Ala His Lys Tyr Ile Ile Arg Ile Ser Thr Ser Ile Leu Asp Leu Arg 785 790 795 800 Asp Lys Phe Asn Glu Ser Leu Gln Val Asn Thr Thr Ala Leu Ile Pro 805 810 815 Lys Glu Ala Asn Ser Glu Glu Val Phe Leu Phe Lys Pro Glu Asn Ile 820 825 830 Thr Phe Glu Asn Gly Thr Asp Leu Phe Ile Ala Ile Gln Ala Val Asp 835 840 845 Lys Val Asp Leu Lys Ser Glu Ile Ser Asn Ile Ala Arg Val Ser Leu 850 855 860 Phe Ile Pro Pro Gln Thr Pro Pro Glu Thr Pro Ser Pro Asp Glu Thr 865 870 875 880 Ser Ala Pro Cys Pro Asn Ile His Ile Asn Ser Thr Ile Pro Gly Ile 885 890 895 His Ile Leu Lys Ile Met Trp Lys Trp Ile Gly Glu Leu Gln Leu Ser 900 905 910 Ile Ala 61501PRTHomo Sapiens 61Met Lys Lys Glu Gly Arg Lys Arg Trp Lys Arg Lys Glu Asp Lys Lys 1 5 10 15 Arg Val Val Val Ser Asn Leu Leu Phe Glu Gly Trp Ser His Lys Glu 20 25 30 Asn Pro Asn Arg His His Arg Gly Asn Gln Ile Lys Thr Ser Lys Tyr 35 40 45 Thr Val Leu Ser Phe Val Pro Lys Asn Ile Phe Glu Gln Leu His Arg 50 55 60 Phe Ala Asn Leu Tyr Phe Val Gly Ile Ala Val Leu Asn Phe Ile Pro 65 70 75 80 Val Val Asn Ala Phe Gln Pro Glu Val Ser Met Ile Pro Ile Cys Val 85 90 95 Ile Leu Ala Val Thr Ala Ile Lys Asp Ala Trp Glu Asp Leu Arg Arg 100 105 110 Tyr Lys Ser Asp Lys Val Ile Asn Asn Arg Glu Cys Leu Ile Tyr Ser 115 120 125 Arg Lys Glu Gln Thr Tyr Val Gln Lys Cys Trp Lys Asp Val Arg Val 130 135 140 Gly Asp Phe Ile Gln Met Lys Cys Asn Glu Ile Val Pro Ala Asp Ile 145 150 155 160 Leu Leu Leu Phe Ser Ser Asp Pro Asn Gly Ile Cys His Leu Glu Thr 165 170 175 Ala Ser Leu Asp Gly Glu Thr Asn Leu Lys Gln Arg Arg Val Val Lys 180 185 190 Gly Phe Ser Gln Gln Glu Val Gln Phe Glu Pro Glu Leu Phe His Asn 195 200 205 Thr Ile Val Cys Glu Lys Pro Asn Asn His Leu Asn Lys Phe Lys Gly 210 215 220 Tyr Met Glu His Pro Asp Gln Thr Arg Thr Gly Phe Gly Cys Glu Ser 225 230 235 240 Leu Leu Leu Arg Gly Cys Thr Ile Arg Asn Thr Glu Met Ala Val Gly 245 250 255 Ile Val Ile Tyr Ala Gly His Glu Thr Lys Ala Met Leu Asn Asn Ser 260 265 270 Gly Pro Arg Tyr Lys Arg Ser Lys Ile Glu Arg Arg Met Asn Ile Asp 275 280 285 Ile Phe Phe Cys Ile Gly Ile Leu Ile Leu Met Cys Leu Ile Gly Ala 290 295 300 Val Gly His Ser Ile Trp Asn Gly Thr Phe Glu Glu His Pro Pro Phe 305 310 315 320 Asp Val Pro Asp Ala Asn Gly Ser Phe Leu Pro Ser Ala Leu Gly Gly 325 330 335 Phe Tyr Met Phe Leu Thr Met Ile Ile Leu Leu Gln Val Leu Ile Pro 340 345 350 Ile Ser Leu Tyr Val Ser Ile Glu Leu Val Lys Leu Gly Gln Val Phe 355 360 365 Phe Leu Ser Asn Asp Leu Asp Leu Tyr Asp Glu Glu Thr Asp Leu Ser 370 375 380 Ile Gln Cys Arg Ala Leu Asn Ile Ala Glu Asp Leu Gly Gln Ile Gln 385 390 395 400 Tyr Ile Phe Ser Asp Lys Thr Gly Thr Leu Thr Glu Asn Lys Met Val 405 410 415 Phe Arg Arg Cys Thr Ile Met Gly Ser Glu Tyr Ser His Gln Glu Asn 420 425 430 Gly Ile Glu Ala Pro Lys Gly Ser Ile Pro Leu Ser Lys Arg Lys Tyr 435 440 445 Pro Ala Leu Leu Arg Asn Glu Glu Ile Lys Asp Ile Leu Leu Ala Leu 450 455 460 Leu Glu Ala Val Trp His Phe His Lys Leu Leu Pro Val Ser Leu Trp 465 470 475 480 Ser Ser Leu Ser Gln Ile Arg Ala Val Pro Ile Thr Cys Lys Leu Ser 485 490 495 Phe Val Tyr Lys Gly 500 62154PRTHomo Sapiens 62Met Gly Arg Arg Ser Pro Phe Lys Pro Arg Asn Lys Val Phe Gly Phe 1 5 10 15 Ser Tyr Pro Trp Cys Arg Ser Tyr Gln Pro Phe Pro Arg Lys Arg Ala 20 25 30 Trp Pro Pro Ser Arg Val Trp Leu Gly Ala Cys Cys Ala Ser Leu Ala 35 40 45 Ser Pro Pro Lys Gly Thr Ile Pro Ser Gly Glu Tyr Tyr Arg Pro Ala 50 55 60 Pro Ser Ser Ser Gly Asp Ser Leu Arg Arg Glu Ser Gly Ala Leu Leu 65 70 75 80 Gln Tyr Leu Pro Ser Leu Ala Ser Pro Cys Ala Asn His Ala Thr Arg 85 90 95 Cys Ser Leu Leu Phe Pro Ile Tyr Lys Ile Lys Met Thr Leu Leu Tyr 100 105 110 Leu Thr Gly Leu Ala Arg Thr His Cys Cys Cys Leu Ala Asp Arg Cys 115 120 125 Ala Glu Ala Val Glu Ser Ala Phe Tyr Leu Val Gly Ser Leu Cys Ile 130 135 140 Asn Ala Arg Gly Ala Ala His Leu Thr Asp 145 150 63484PRTHomo Sapiens 63Met Ala Gly Pro Trp Thr Phe Thr Leu Leu Cys Gly Leu Leu Ala Ala 1 5 10 15 Thr Leu Ile Gln Ala Thr Leu Ser Pro Thr Ala Val Leu Ile Leu Gly 20 25 30 Pro Lys Val Ile Lys Glu Lys Leu Thr Gln Glu Leu Lys Asp His Asn 35 40 45 Ala Thr Ser Ile Leu Gln Gln Leu Pro Leu Leu Ser Ala Met Arg Glu 50 55 60 Lys Pro Ala Gly Gly Ile Pro Val Leu Gly Ser Leu Val Asn Thr Val 65 70 75 80 Leu Lys His Ile Ile Trp Leu Lys Val Ile Thr Ala Asn Ile Leu Gln 85 90 95 Leu Gln Val Lys Pro Ser Ala Asn Asp Gln Glu Leu Leu Val Lys Ile 100 105 110 Pro Leu Asp Met Val Ala Gly Phe Asn Thr Pro Leu Val Lys Thr Ile 115 120 125 Val Glu Phe His Met Thr Thr Glu Ala Gln Ala Thr Ile Arg Met Asp 130 135 140 Thr Ser Ala Ser Gly Pro Thr Arg Leu Val Leu Ser Asp Cys Ala Thr 145 150 155 160 Ser His Gly Ser Leu Arg Ile Gln Leu Leu His Lys Leu Ser Phe Leu 165 170 175 Val Asn Ala Leu Ala Lys Gln Val Met Asn Leu Leu Val Pro Ser Leu 180 185 190 Pro Asn Leu Val Lys Asn Gln Leu Cys Pro Val Ile Glu Ala Ser Phe 195 200 205 Asn Gly Met Tyr Ala Asp Leu Leu Gln Leu Val Lys Val Pro Ile Ser 210 215 220 Leu Ser Ile Asp Arg Leu Glu Phe Asp Leu Leu Tyr Pro Ala Ile Lys 225 230 235 240 Gly Asp Thr Ile Gln Leu Tyr Leu Gly Ala Lys Leu Leu Asp Ser Gln 245 250 255 Gly Lys Val Thr Lys Trp Phe Asn Asn Ser Ala Ala Ser Leu Thr Met 260 265 270 Pro Thr Leu Asp Asn Ile Pro Phe Ser Leu Ile Val Ser Gln Asp Val 275 280 285 Val Lys Ala Ala Val Ala Ala Val Leu Ser Pro Glu Glu Phe Met Val 290 295 300 Leu Leu Asp Ser Val Leu Pro Glu Ser Ala His Arg Leu Lys Ser Ser 305 310 315 320 Ile Gly Leu Ile Asn Glu Lys Ala Ala Asp Lys Leu Gly Ser Thr Gln 325 330 335 Ile Val Lys Ile Leu Thr Gln Asp Thr Pro Glu Phe Phe Ile Asp Gln 340 345 350 Gly His Ala Lys Val Ala Gln Leu Ile Val Leu Glu Val Phe Pro Ser 355 360 365 Ser Glu Ala Leu Arg Pro Leu Phe Thr Leu Gly Ile Glu Ala Ser Ser 370 375 380 Glu Ala Gln Phe Tyr Thr Lys Gly Asp Gln Leu Ile Leu Asn Leu Asn 385 390 395 400 Asn Ile Ser Ser Asp Arg Ile Gln Leu Met Asn Ser Gly Ile Gly Trp 405 410 415 Phe Gln Pro Asp Val Leu Lys Asn Ile Ile Thr Glu Ile Ile His Ser 420 425 430 Ile Leu Leu Pro Asn Gln Asn Gly Lys Leu Arg Ser Gly Val Pro Val 435 440 445 Ser Leu Val Lys Ala Leu Gly Phe Glu Ala Ala Glu Ser Ser Leu Thr 450 455 460 Lys Asp Ala Leu Val Leu Thr Pro Ala Ser Leu Trp Lys Pro Ser Ser 465 470 475 480 Pro Val Ser Gln 64256PRTHomo Sapiens 64Met Phe Gln Thr Gly Gly Leu Ile Val Phe Tyr Gly Leu Leu Ala Gln 1 5 10 15 Thr Met Ala Gln Phe Gly Gly Leu Pro Val Pro Leu Asp Gln Thr Leu 20 25 30 Pro Leu Asn Val Asn Pro Ala Leu Pro Leu Ser Pro Thr Gly Leu Ala 35 40 45 Gly Ser Leu Thr Asn Ala Leu Ser Asn Gly Leu Leu Ser Gly Gly Leu 50 55 60 Leu Gly Ile Leu Glu Asn Leu Pro Leu Leu Asp Ile Leu Lys Pro Gly 65 70 75 80 Gly Gly Thr Ser Gly Gly Leu Leu Gly Gly Leu Leu Gly Lys Val Thr 85 90 95 Ser Val Ile Pro Gly Leu Asn Asn Ile Ile Asp Ile Lys Val Thr Asp 100 105 110 Pro Gln Leu Leu Glu Leu Gly Leu Val Gln Ser Pro Asp Gly His Arg 115 120 125 Leu Tyr Val Thr Ile Pro Leu Gly Ile Lys Leu Gln Val Asn Thr Pro 130 135 140 Leu Val Gly Ala Ser Leu Leu Arg Leu Ala Val Lys Leu Asp Ile Thr 145 150 155 160 Ala Glu Ile Leu Ala Val Arg Asp Lys Gln Glu Arg Ile His Leu Val 165 170 175 Leu Gly Asp Cys Thr His Ser Pro Gly Ser Leu Gln Ile Ser Leu Leu 180 185 190 Asp Gly Leu Gly Pro Leu Pro Ile Gln Gly Leu Leu Asp Ser Leu Thr 195 200 205 Gly Ile Leu Asn Lys Val Leu Pro Glu Leu Val Gln Gly Asn Val Cys 210 215 220 Pro Leu Val Asn Glu Val Leu Arg Gly Leu Asp Ile Thr Leu Val His 225 230 235 240 Asp Ile Val Asn Met Leu Ile His Gly Leu Gln Phe Val Ile Lys Val 245 250 255 65791PRTHomo Sapiens 65Met Ser Gln Pro Arg Pro Arg Tyr Val Val Asp Arg Ala Ala Tyr Ser 1 5 10 15 Leu Thr Leu Phe Asp Asp Glu Phe Glu Lys Lys Asp Arg Thr Tyr Pro 20 25 30 Val Gly Glu Lys Leu Arg Asn Ala Phe Arg Cys Ser Ser Ala Lys Ile 35 40 45 Lys Ala Val Val Phe Gly Leu Leu Pro Val Leu Ser Trp Leu Pro Lys 50 55 60 Tyr Lys Ile Lys Asp Tyr Ile Ile Pro Asp Leu Leu Gly Gly Leu Ser 65 70 75 80 Gly Gly Ser Ile Gln Val Pro Gln Gly Met Ala Phe Ala Leu Leu Ala 85 90 95 Asn Leu Pro Ala Val Asn Gly Leu Tyr Ser Ser Phe Phe Pro Leu Leu 100 105 110 Thr Tyr Phe Phe Leu Gly Gly Val His Gln Met Val Pro Gly Thr Phe 115 120 125 Ala Val Ile Ser Ile Leu Val Gly Asn Ile Cys Leu Gln Leu Ala Pro 130 135 140 Glu Ser Lys Phe Gln Val Phe Asn Asn Ala Thr Asn Glu Ser Tyr Val 145 150 155 160 Asp Thr Ala Ala Met Glu Ala Glu Arg Leu His Val Ser Ala Thr Leu 165 170 175 Ala Cys Leu Thr Ala Ile Ile Gln Met Gly Leu Gly Phe Met Gln Phe 180 185 190 Gly Phe Val Ala Ile Tyr Leu Ser Glu Ser Phe Ile Arg Gly Phe Met 195 200 205 Thr Ala Ala Gly Leu Gln Ile Leu Ile Ser Val Leu Lys Tyr Ile Phe 210 215 220 Gly Leu Thr Ile Pro Ser Tyr Thr Gly Pro Gly Ser Ile Val Phe Thr 225 230 235 240 Phe Ile Asp Ile Cys Lys Asn Leu Pro His Thr Asn Ile Ala Ser Leu 245 250 255 Ile Phe Ala Leu Ile Ser Gly Ala Phe Leu Val Leu Val Lys Glu Leu 260 265 270 Asn Ala Arg Tyr Met His Lys Ile Arg Phe Pro Ile Pro Thr Glu Met 275 280 285 Ile Val Val Val Val Ala Thr Ala Ile Ser Gly Gly Cys Lys Met Pro 290 295 300 Lys Lys Tyr His Met Gln Ile Val Gly Glu Ile Gln Arg Gly Phe Pro 305 310 315 320 Thr Pro Val Ser Pro Val Val Ser Gln Trp Lys Asp Met Ile Gly Thr 325 330 335 Ala Phe Ser Leu Ala Ile Val Ser Tyr Val Ile Asn Leu Ala Met Gly 340 345 350 Arg Thr Leu Ala Asn Lys His Gly Tyr Asp Val Asp Ser Asn Gln Glu 355 360 365 Met Ile Ala Leu Gly Cys Ser Asn Phe Phe Gly Ser Phe Phe Lys Ile 370 375 380 His Val Ile Cys Cys Ala Leu Ser Val Thr Leu Ala Val Asp Gly Ala 385 390 395 400 Gly Gly Lys Ser Gln Val Ala Ser Leu Cys Val Ser Leu Val Val Met 405 410 415 Ile Thr Met Leu Val Leu Gly Ile Tyr Leu Tyr Pro Leu Pro Lys Ser 420 425 430 Val Leu Gly Ala Leu Ile Ala Val Asn Leu Lys Asn Ser Leu Lys Gln 435 440 445 Leu Thr Asp Pro Tyr Tyr Leu Trp Arg Lys Ser Lys Leu Asp Cys Cys 450 455 460 Ile Trp Val Val Ser Phe Leu Ser Ser Phe Phe Leu Ser Leu Pro Tyr 465 470 475 480 Gly Val Ala Val Gly Val Ala Phe Ser Val Leu Val Val Val Phe Gln

485 490 495 Thr Gln Phe Arg Asn Gly Tyr Ala Leu Ala Gln Val Met Asp Thr Asp 500 505 510 Ile Tyr Val Asn Pro Lys Thr Tyr Asn Arg Ala Gln Asp Ile Gln Gly 515 520 525 Ile Lys Ile Ile Thr Tyr Cys Ser Pro Leu Tyr Phe Ala Asn Ser Glu 530 535 540 Ile Phe Arg Gln Lys Val Ile Ala Lys Thr Gly Met Asp Pro Gln Lys 545 550 555 560 Val Leu Leu Ala Lys Gln Lys Tyr Leu Lys Lys Gln Glu Lys Arg Arg 565 570 575 Met Arg Pro Thr Gln Gln Arg Arg Ser Leu Phe Met Lys Thr Lys Thr 580 585 590 Val Ser Leu Gln Glu Leu Gln Gln Asp Phe Glu Asn Ala Pro Pro Thr 595 600 605 Asp Pro Asn Asn Asn Gln Thr Pro Ala Asn Gly Thr Ser Val Ser Tyr 610 615 620 Ile Thr Phe Ser Pro Asp Ser Ser Ser Pro Ala Gln Ser Glu Pro Pro 625 630 635 640 Ala Ser Ala Glu Ala Pro Gly Glu Pro Ser Asp Met Leu Ala Ser Val 645 650 655 Pro Pro Phe Val Thr Phe His Thr Leu Ile Leu Asp Met Ser Gly Val 660 665 670 Ser Phe Val Asp Leu Met Gly Ile Lys Ala Leu Ala Lys Leu Ser Ser 675 680 685 Thr Tyr Gly Lys Ile Gly Val Lys Val Phe Leu Val Asn Ile His Ala 690 695 700 Gln Val Tyr Asn Asp Ile Ser His Gly Gly Val Phe Glu Asp Gly Ser 705 710 715 720 Leu Glu Cys Lys His Val Phe Pro Ser Ile His Asp Ala Val Leu Phe 725 730 735 Ala Gln Ala Asn Ala Arg Asp Val Thr Pro Gly His Asn Phe Gln Gly 740 745 750 Ala Pro Gly Asp Ala Glu Leu Ser Leu Tyr Asp Ser Glu Glu Asp Ile 755 760 765 Arg Ser Tyr Trp Asp Leu Glu Gln Glu Met Phe Gly Ser Met Phe His 770 775 780 Ala Glu Thr Leu Thr Ala Leu 785 790 66243PRTHomo Sapiens 66Met Glu Gln Gly Ser Gly Arg Leu Glu Asp Phe Pro Val Asn Val Phe 1 5 10 15 Ser Val Thr Pro Tyr Thr Pro Ser Thr Ala Asp Ile Gln Val Ser Asp 20 25 30 Asp Asp Lys Ala Gly Ala Thr Leu Leu Phe Ser Gly Ile Phe Leu Gly 35 40 45 Leu Val Gly Ile Thr Phe Thr Val Met Gly Trp Ile Lys Tyr Gln Gly 50 55 60 Val Ser His Phe Glu Trp Thr Gln Leu Leu Gly Pro Val Leu Leu Ser 65 70 75 80 Val Gly Val Thr Phe Ile Leu Ile Ala Val Cys Lys Phe Lys Met Leu 85 90 95 Ser Cys Gln Leu Cys Lys Glu Ser Glu Glu Arg Val Pro Asp Ser Glu 100 105 110 Gln Thr Pro Gly Gly Pro Ser Phe Val Phe Thr Gly Ile Asn Gln Pro 115 120 125 Ile Thr Phe His Gly Ala Thr Val Val Gln Tyr Ile Pro Pro Pro Tyr 130 135 140 Gly Ser Pro Glu Pro Met Gly Ile Asn Thr Ser Tyr Leu Gln Ser Val 145 150 155 160 Val Ser Pro Cys Gly Leu Ile Thr Ser Gly Gly Ala Ala Ala Ala Met 165 170 175 Ser Ser Pro Pro Gln Tyr Tyr Thr Ile Tyr Pro Gln Asp Asn Ser Ala 180 185 190 Phe Val Val Asp Glu Gly Cys Leu Ser Phe Thr Asp Gly Gly Asn His 195 200 205 Arg Pro Asn Pro Asp Val Asp Gln Leu Glu Glu Thr Gln Leu Glu Glu 210 215 220 Glu Ala Cys Ala Cys Phe Ser Pro Pro Pro Tyr Glu Glu Ile Tyr Ser 225 230 235 240 Leu Pro Arg 6721DNAArtificial SequenceOligonucleotide 67acacgaatgg tagatacagt g 216821DNAArtificial SequenceOligonucleotide 68atacttgtga gctgttccat g 216921DNAArtificial SequenceOligonucleotide 69actgttacct tgcatggact g 217021DNAArtificial SequenceOligonucleotide 70caatgagaac acatggacat g 217121DNAArtificial SequenceOligonucleotide 71ccatgaaagc tccatgtcta c 217221DNAArtificial SequenceOligonucleotide 72agagatggca catattctgt c 217321DNAArtificial SequenceOligonucleotide 73atcggctgaa gtcaagcatc g 217421DNAArtificial SequenceOligonucleotide 74tggtcagtga ggactcagct g 217521DNAArtificial SequenceOligonucleotide 75tttctctgct tgatgcactt g 217621DNAArtificial SequenceOligonucleotide 76gtgagcactg ggaagcagct c 217721DNAArtificial SequenceOligonucleotide 77ggcaaatgct agagacgtga c 217821DNAArtificial SequenceOligonucleotide 78aggtgtcctt cagctgccaa g 217921DNAArtificial SequenceOligonucleotide 79gttaagtgct ctctggattt g 218021DNAArtificial SequenceOligonucleotide 80atcctgattg ctgtgtgcaa g 218121DNAArtificial SequenceOligonucleotide 81ctcttctagc tggtcaacat c 218221DNAArtificial SequenceOligonucleotide 82ccagcaacaa cttacgtggt c 218321DNAArtificial SequenceOligonucleotide 83cctttattca cccaatcact c 21842165DNAHomo Sapiens 84agaacagcgc agtttgccct ccgctcacgc agagcctctc cgtggcctcc gcaccttgag 60cattaggcca gttctcctct tctctctaat ccatccgtca cctctcctgt catccgtttc 120catgccgtga ggtccattca cagaacacat ccatggctct catgctcagt ttggttctga 180gtctcctcaa gctgggatca gggcagtggc aggtgtttgg gccagacaag cctgtccagg 240ccttggtggg ggaggacgca gcattctcct gtttcctgtc tcctaagacc aatgcagagg 300ccatggaagt gcggttcttc aggggccagt tctctagcgt ggtccacctc tacagggacg 360ggaaggacca gccatttatg cagatgccac agtatcaagg caggacaaaa ctggtgaagg 420attctattgc ggaggggcgc atctctctga ggctggaaaa cattactgtg ttggatgctg 480gcctctatgg gtgcaggatt agttcccagt cttactacca gaaggccatc tgggagctac 540aggtgtcagc actgggctca gttcctctca tttccatcac gggatatgtt gatagagaca 600tccagctact ctgtcagtcc tcgggctggt tcccccggcc cacagcgaag tggaaaggtc 660cacaaggaca ggatttgtcc acagactcca ggacaaacag agacatgcat ggcctgtttg 720atgtggagat ctctctgacc gtccaagaga acgccgggag catatcctgt tccatgcggc 780atgctcatct gagccgagag gtggaatcca gggtacagat aggagatacc tttttcgagc 840ctatatcgtg gcacctggct accaaagtac tgggaatact ctgctgtggc ctattttttg 900gcattgttgg actgaagatt ttcttctcca aattccagtg taagcgagag agagaagcat 960gggccggtgc cttattcatg gttccagcag ggacaggatc agagatgctc ccacatccag 1020ctgcttctct tcttctagtc ctagcctcca ggggcccagg cccaaaaaag gaaaatccag 1080gcggaactgg actggagaag aaagcacgga caggcagaat tgagagacgc ccggaaacac 1140gcagtggagg tgactctgga tccagagacg gctcacccga agctctgcgt ttctgatctg 1200aaaactgtaa cccatagaaa agctccccag gaggtgcctc actctgagaa gagatttaca 1260aggaagagtg tggtggcttc tcagagtttc caagcaggga aacattactg ggaggtggac 1320ggaggacaca ataaaaggtg gcgcgtggga gtgtgccggg atgatgtgga caggaggaag 1380gagtacgtga ctttgtctcc cgatcatggg tactgggtcc tcagactgaa tggagaacat 1440ttgtatttca cattaaatcc ccgttttatc agcgtcttcc ccaggacccc acctacaaaa 1500ataggggtct tcctggacta tgagtgtggg accatctcct tcttcaacat aaatgaccag 1560tcccttattt ataccctgac atgtcggttt gaaggcttat tgaggcccta cattgagtat 1620ccgtcctata atgagcaaaa tggaactccc atagtcatct gcccagtcac ccaggaatca 1680gagaaagagg cctcttggca aagggcctct gcaatcccag agacaagcaa cagtgagtcc 1740tcctcacagg caaccacgcc cttcctcccc aggggtgaaa tgtaggatga atcacatccc 1800acattcttct ttagggatat taaggtctct ctcccagatc caaagtcccg cagcagccgg 1860ccaaggtggc ttccagatga agggggactg gcctgtccac atgggagtca ggtgtcatgg 1920ctgccctgag ctgggaggga agaaggctga cattacattt agtttgctct cactccatct 1980ggctaagtga tcttgaaata ccacctctca ggtgaagaac cgtcaggaat tcccatctca 2040caggctgtgg tgtagattaa gtagacaagg aatgtgaata atgcttagat cttattgatg 2100acagagtgta tcctaatggt ttgttcatta tattacactt tcagtaaaaa aaaaaaaaaa 2160aaaaa 216585347PRTHomo Sapiens 85Met Ala Leu Met Leu Ser Leu Val Leu Ser Leu Leu Lys Leu Gly Ser 1 5 10 15 Gly Gln Trp Gln Val Phe Gly Pro Asp Lys Pro Val Gln Ala Leu Val 20 25 30 Gly Glu Asp Ala Ala Phe Ser Cys Phe Leu Ser Pro Lys Thr Asn Ala 35 40 45 Glu Ala Met Glu Val Arg Phe Phe Arg Gly Gln Phe Ser Ser Val Val 50 55 60 His Leu Tyr Arg Asp Gly Lys Asp Gln Pro Phe Met Gln Met Pro Gln 65 70 75 80 Tyr Gln Gly Arg Thr Lys Leu Val Lys Asp Ser Ile Ala Glu Gly Arg 85 90 95 Ile Ser Leu Arg Leu Glu Asn Ile Thr Val Leu Asp Ala Gly Leu Tyr 100 105 110 Gly Cys Arg Ile Ser Ser Gln Ser Tyr Tyr Gln Lys Ala Ile Trp Glu 115 120 125 Leu Gln Val Ser Ala Leu Gly Ser Val Pro Leu Ile Ser Ile Thr Gly 130 135 140 Tyr Val Asp Arg Asp Ile Gln Leu Leu Cys Gln Ser Ser Gly Trp Phe 145 150 155 160 Pro Arg Pro Thr Ala Lys Trp Lys Gly Pro Gln Gly Gln Asp Leu Ser 165 170 175 Thr Asp Ser Arg Thr Asn Arg Asp Met His Gly Leu Phe Asp Val Glu 180 185 190 Ile Ser Leu Thr Val Gln Glu Asn Ala Gly Ser Ile Ser Cys Ser Met 195 200 205 Arg His Ala His Leu Ser Arg Glu Val Glu Ser Arg Val Gln Ile Gly 210 215 220 Asp Thr Phe Phe Glu Pro Ile Ser Trp His Leu Ala Thr Lys Val Leu 225 230 235 240 Gly Ile Leu Cys Cys Gly Leu Phe Phe Gly Ile Val Gly Leu Lys Ile 245 250 255 Phe Phe Ser Lys Phe Gln Cys Lys Arg Glu Arg Glu Ala Trp Ala Gly 260 265 270 Ala Leu Phe Met Val Pro Ala Gly Thr Gly Ser Glu Met Leu Pro His 275 280 285 Pro Ala Ala Ser Leu Leu Leu Val Leu Ala Ser Arg Gly Pro Gly Pro 290 295 300 Lys Lys Glu Asn Pro Gly Gly Thr Gly Leu Glu Lys Lys Ala Arg Thr 305 310 315 320 Gly Arg Ile Glu Arg Arg Pro Glu Thr Arg Ser Gly Gly Asp Ser Gly 325 330 335 Ser Arg Asp Gly Ser Pro Glu Ala Leu Arg Phe 340 345 8621DNAArtificial SequenceOligonucleotide 86attcatggtt ccagcaggga c 218721DNAArtificial SequenceOligonucleotide 87gggagacaaa gtcacgtact c 218822DNAArtificial SequenceOligonucleotide 88tcctggtgtt cgtggtctgc tt 228922DNAArtificial SequenceOligonucleotide 89gagagtcctg gcttttgtgg gc 229015PRTHomo Sapiens 90Gly Ser Ser Asp Leu Thr Trp Pro Pro Ala Ile Lys Leu Gly Cys 1 5 10 15 9116PRTHomo Sapiens 91Asp Arg Tyr Val Ala Val Arg His Pro Leu Arg Ala Arg Gly Leu Arg 1 5 10 15 9215PRTHomo Sapiens 92Val Ala Pro Arg Ala Lys Ala His Lys Ser Gln Asp Ser Leu Cys 1 5 10 15 9313PRTHomo Sapiens 93Cys Phe Arg Ser Thr Arg His Asn Phe Asn Ser Met Arg 1 5 10 9422PRTHomo Sapiens 94Met Asn Gly Thr Tyr Asn Thr Cys Gly Ser Ser Asp Leu Thr Trp Pro 1 5 10 15 Pro Ala Ile Lys Leu Gly 20 9514PRTHomo Sapiens 95Arg Asp Thr Ser Asp Thr Pro Leu Cys Gln Leu Ser Gln Gly 1 5 10 9622PRTHomo Sapiens 96Gly Ile Gln Glu Gly Gly Phe Cys Phe Arg Ser Thr Arg His Asn Phe 1 5 10 15 Asn Ser Met Arg Phe Pro 20 9730PRTHomo Sapiens 97Ala Lys Glu Phe Gln Glu Ala Ser Ala Leu Ala Val Ala Pro Arg Ala 1 5 10 15 Lys Ala His Lys Ser Gln Asp Ser Leu Cys Val Thr Leu Ala 20 25 30 9822DNAArtificial SequenceOligonucleotide 98tcctgctcgt cgctctcctg at 229920DNAArtificial SequenceOligonucleotide 99tcgctttttg tcgtatttgc 2010015PRTHomo Sapiens 100His Asn Gly Ser Tyr Glu Ile Ser Val Leu Met Met Gly Asn Ser 1 5 10 15 10115PRTHomo Sapiens 101Asn Leu Pro Thr Pro Pro Thr Val Glu Asn Gln Gln Arg Leu Ala 1 5 10 15 102619PRTHomo Sapiens 102Arg Lys Tyr Arg Lys Asp Tyr Glu Leu Arg Gln Lys Lys Trp Ser His 1 5 10 15 Ile Pro Pro Glu Asn Ile Phe Pro Leu Glu Thr Asn Glu Thr Asn His 20 25 30 Val Ser Leu Lys Ile Asp Asp Asp Lys Arg Arg Asp Thr Ile Gln Arg 35 40 45 Leu Arg Gln Cys Lys Tyr Asp Lys Lys Arg Val Ile Leu Lys Asp Leu 50 55 60 Lys His Asn Asp Gly Asn Phe Thr Glu Lys Gln Lys Ile Glu Leu Asn 65 70 75 80 Lys Leu Leu Gln Ile Asp Tyr Tyr Asn Leu Thr Lys Phe Tyr Gly Thr 85 90 95 Val Lys Leu Asp Thr Met Ile Phe Gly Val Ile Glu Tyr Cys Glu Arg 100 105 110 Gly Ser Leu Arg Glu Val Leu Asn Asp Thr Ile Ser Tyr Pro Asp Gly 115 120 125 Thr Phe Met Asp Trp Glu Phe Lys Ile Ser Val Leu Tyr Asp Ile Ala 130 135 140 Lys Gly Met Ser Tyr Leu His Ser Ser Lys Thr Glu Val His Gly Arg 145 150 155 160 Leu Lys Ser Thr Asn Cys Val Val Asp Ser Arg Met Val Val Lys Ile 165 170 175 Thr Asp Phe Gly Cys Asn Ser Ile Leu Pro Pro Lys Lys Asp Leu Trp 180 185 190 Thr Ala Pro Glu His Leu Arg Gln Ala Asn Ile Ser Gln Lys Gly Asp 195 200 205 Val Tyr Ser Tyr Gly Ile Ile Ala Gln Glu Ile Ile Leu Arg Lys Glu 210 215 220 Thr Phe Tyr Thr Leu Ser Cys Arg Asp Arg Asn Glu Lys Ile Phe Arg 225 230 235 240 Val Glu Asn Ser Asn Gly Met Lys Pro Phe Arg Pro Asp Leu Phe Leu 245 250 255 Glu Thr Ala Glu Glu Lys Glu Leu Glu Val Tyr Leu Leu Val Lys Asn 260 265 270 Cys Trp Glu Glu Asp Pro Glu Lys Arg Pro Asp Phe Lys Lys Ile Glu 275 280 285 Thr Thr Leu Ala Lys Ile Phe Gly Leu Phe His Asp Gln Lys Asn Glu 290 295 300 Ser Tyr Met Asp Thr Leu Ile Arg Arg Leu Gln Leu Tyr Ser Arg Asn 305 310 315 320 Leu Glu His Leu Val Glu Glu Arg Thr Gln Leu Tyr Lys Ala Glu Arg 325 330 335 Asp Arg Ala Asp Arg Leu Asn Phe Met Leu Leu Pro Arg Leu Val Val 340 345 350 Lys Ser Leu Lys Glu Lys Gly Phe Val Glu Pro Glu Leu Tyr Glu Glu 355 360 365 Val Thr Ile Tyr Phe Ser Asp Ile Val Gly Phe Thr Thr Ile Cys Lys 370 375 380 Tyr Ser Thr Pro Met Glu Val Val Asp Met Leu Asn Asp Ile Tyr Lys 385 390 395 400 Ser Phe Asp His Ile Val Asp His His Asp Val Tyr Lys Val Glu Thr 405 410 415 Ile Gly Asp Ala Tyr Met Val Ala Ser Gly Leu Pro Lys Arg Asn Gly 420 425 430 Asn Arg His Ala Ile Asp Ile Ala Lys Met Ala Leu Glu Ile Leu Ser 435 440 445 Phe Met Gly Thr Phe Glu Leu Glu His Leu Pro Gly Leu Pro Ile Trp 450 455 460 Ile Arg Ile Gly Val His Ser Gly Pro Cys Ala Ala Gly Val Val Gly 465 470 475 480 Ile Lys Met Pro Arg Tyr Cys Leu Phe Gly Asp Thr Val Asn Thr Ala 485 490 495 Ser Arg Met Glu Ser Thr Gly Leu Pro Leu Arg Ile His Val Ser

Gly 500 505 510 Ser Thr Ile Ala Ile Leu Lys Arg Thr Glu Cys Gln Phe Leu Tyr Glu 515 520 525 Val Arg Gly Glu Thr Tyr Leu Lys Gly Arg Gly Asn Glu Thr Thr Tyr 530 535 540 Trp Leu Thr Gly Met Lys Asp Gln Lys Phe Asn Leu Pro Thr Pro Pro 545 550 555 560 Thr Val Glu Asn Gln Gln Arg Leu Gln Ala Glu Phe Ser Asp Met Ile 565 570 575 Ala Asn Ser Leu Gln Lys Arg Gln Ala Ala Gly Ile Arg Ser Gln Lys 580 585 590 Pro Arg Arg Val Ala Ser Tyr Lys Lys Gly Thr Leu Glu Tyr Leu Gln 595 600 605 Leu Asn Thr Thr Asp Lys Glu Ser Thr Tyr Phe 610 615 10320DNAArtificial SequenceOligonucleotide 103gctggtaact atcttcctgc 2010420DNAArtificial SequenceOligonucleotide 104gaagaatgtt gtccagaggt 2010515PRTHomo Sapiens 105Leu Ile Asn Lys Val Pro Leu Pro Val Asp Lys Leu Ala Pro Leu 1 5 10 15 10615PRTHomo Sapiens 106Ser Glu Ala Val Lys Lys Leu Leu Glu Ala Leu Ser His Leu Val 1 5 10 15 10720DNAArtificial SequenceOligonucleotide 107tgttttcaac taccaggggc 2010820DNAArtificial SequenceOligonucleotide 108tgttggcttt ggcagagtcc 2010924DNAArtificial SequenceOligonucleotide 109gaggcagagt tcaggcttca ccga 2411020DNAArtificial SequenceOligonucleotide 110tgttggcttt ggcagagtcc 2011156PRTHomo Sapiens 111Thr Gly Met Asp Met Trp Ser Thr Gln Asp Leu Tyr Asp Asn Pro Val 1 5 10 15 Thr Ser Val Phe Gln Tyr Glu Gly Leu Trp Arg Ser Cys Val Arg Gln 20 25 30 Ser Ser Gly Phe Thr Glu Cys Arg Pro Tyr Phe Thr Ile Leu Gly Leu 35 40 45 Pro Ala Met Leu Gln Ala Val Arg 50 55 11253PRTHomo Sapiens 112Asp Gln Trp Ser Thr Gln Asp Leu Tyr Asn Asn Pro Val Thr Ala Val 1 5 10 15 Phe Asn Tyr Gln Gly Leu Trp Arg Ser Cys Val Arg Glu Ser Ser Gly 20 25 30 Phe Thr Glu Cys Arg Gly Tyr Phe Thr Leu Leu Gly Leu Pro Ala Met 35 40 45 Leu Gln Ala Val Arg 50 11314PRTHomo Sapiens 113Ser Thr Gln Asp Leu Tyr Asn Asn Pro Val Thr Ala Val Phe 1 5 10 11412PRTHomo Sapiens 114Asp Met Trp Ser Thr Gln Asp Leu Tyr Asp Asn Pro 1 5 10 11512PRTHomo Sapiens 115Cys Arg Pro Tyr Phe Thr Ile Leu Gly Leu Pro Ala 1 5 10 11613PRTHomo Sapiens 116Thr Asn Phe Trp Met Ser Thr Ala Asn Met Tyr Thr Gly 1 5 10 117816DNAHomo Sapiens 117gccaggatca tgtccaccac cacatgccaa gtggtggcgt tcctcctgtc catcctgggg 60ctggccggct gcatcgcggc caccgggatg gacatgtgga gcacccagga cctgtacgac 120aaccccgtca cctccgtgtt ccagtacgaa gggctctgga ggagctgcgt gaggcagagt 180tcaggcttca ccgaatgcag gccctatttc accatcctgg gacttccagc catgctgcag 240gcagtgcgag ccctgatgat cgtaggcatc gtcctgggtg ccattggcct cctggtatcc 300atctttgccc tgaaatgcat ccgcattggc agcatggagg actctgccaa agccaacatg 360acactgacct ccgggatcat gttcattgtc tcaggtcttt gtgcaattgc tggagtgtct 420gtgtttgcca acatgctggt gactaacttc tggatgtcca cagctaacat gtacaccggc 480atgggtggga tggtgcagac tgttcagacc aggtacacat ttggtgcggc tctgttcgtg 540ggctgggtcg ctggaggcct cacactaatt gggggtgtga tgatgtgcat cgcctgccgg 600ggcctggcac cagaagaaac caactacaaa gccgtttctt atcatgcctc aggccacagt 660gttgcctaca agcctggagg cttcaaggcc agcactggct ttgggtccaa caccaaaaac 720aagaagatat acgatggagg tgcccgcaca gaggacgagg tacaatctta tccttccaag 780cacgactatg tgtaatgctc taagacctct cagcac 816118261PRTHomo Sapiens 118Met Ser Thr Thr Thr Cys Gln Val Val Ala Phe Leu Leu Ser Ile Leu 1 5 10 15 Gly Leu Ala Gly Cys Ile Ala Ala Thr Gly Met Asp Met Trp Ser Thr 20 25 30 Gln Asp Leu Tyr Asp Asn Pro Val Thr Ser Val Phe Gln Tyr Glu Gly 35 40 45 Leu Trp Arg Ser Cys Val Arg Gln Ser Ser Gly Phe Thr Glu Cys Arg 50 55 60 Pro Tyr Phe Thr Ile Leu Gly Leu Pro Ala Met Leu Gln Ala Val Arg 65 70 75 80 Ala Leu Met Ile Val Gly Ile Val Leu Gly Ala Ile Gly Leu Leu Val 85 90 95 Ser Ile Phe Ala Leu Lys Cys Ile Arg Ile Gly Ser Met Glu Asp Ser 100 105 110 Ala Lys Ala Asn Met Thr Leu Thr Ser Gly Ile Met Phe Ile Val Ser 115 120 125 Gly Leu Cys Ala Ile Ala Gly Val Ser Val Phe Ala Asn Met Leu Val 130 135 140 Thr Asn Phe Trp Met Ser Thr Ala Asn Met Tyr Thr Gly Met Gly Gly 145 150 155 160 Met Val Gln Thr Val Gln Thr Arg Tyr Thr Phe Gly Ala Ala Leu Phe 165 170 175 Val Gly Trp Val Ala Gly Gly Leu Thr Leu Ile Gly Gly Val Met Met 180 185 190 Cys Ile Ala Cys Arg Gly Leu Ala Pro Glu Glu Thr Asn Tyr Lys Ala 195 200 205 Val Ser Tyr His Ala Ser Gly His Ser Val Ala Tyr Lys Pro Gly Gly 210 215 220 Phe Lys Ala Ser Thr Gly Phe Gly Ser Asn Thr Lys Asn Lys Lys Ile 225 230 235 240 Tyr Asp Gly Gly Ala Arg Thr Glu Asp Glu Val Gln Ser Tyr Pro Ser 245 250 255 Lys His Asp Tyr Val 260 119227DNAHomo Sapiens 119gccaggatca tgtccaccac cacatgccaa gtggtggcgt tcctcctgtc catcctgggg 60ctggccggct gcatcgcggc caccgggatg gacatgtgga gcacccagga cctgtacgac 120aaccccgtca cctccgtgtt ccagtacgaa gggctctgga ggagctgcgt gaggcagagt 180tcaggcttca ccgaatgcag gccctatttc accatcctgg gacttcc 22712069PRTHomo Sapiens 120Met Ser Thr Thr Thr Cys Gln Val Val Ala Phe Leu Leu Ser Ile Leu 1 5 10 15 Gly Leu Ala Gly Cys Ile Ala Ala Thr Gly Met Asp Met Trp Ser Thr 20 25 30 Gln Asp Leu Tyr Asp Asn Pro Val Thr Ser Val Phe Gln Tyr Glu Gly 35 40 45 Leu Trp Arg Ser Cys Val Arg Gln Ser Ser Gly Phe Thr Glu Cys Arg 50 55 60 Pro Tyr Phe Thr Ile 65 12120DNAArtificial SequenceOligonucleotide 121aatgagagga aagagaaaac 2012220DNAArtificial SequenceOligonucleotide 122atggtagaag agtaggcaat 2012315PRTHomo Sapiens 123Glu Lys Trp Asn Leu His Lys Arg Ile Ala Leu Lys Met Val Cys 1 5 10 15 12411PRTHomo Sapiens 124Cys Leu Gly Phe Asn Phe Lys Glu Met Phe Lys 1 5 10 12523DNAArtificial SequenceOligonucleotide 125taatgatgaa ccctacactg agc 2312620DNAArtificial SequenceOligonucleotide 126atggacaaat gccctacctt 2012722DNAArtificial SequenceOligonucleotide 127agtgctggaa ggatgtgcgt gt 2212820DNAArtificial SequenceOligonucleotide 128ttgaggtggt tgttgggttt 2012920DNAArtificial SequenceOligonucleotide 129agatgtgctg aggctgtaga 2013020DNAArtificial SequenceOligonucleotide 130atgaaggttg attatttgag 2013123DNAArtificial SequenceOligonucleotide 131agccgcatac tcccttaccc tct 2313220DNAArtificial SequenceOligonucleotide 132gcagcagccc aaacaccaca 2013320DNAArtificial SequenceOligonucleotide 133ctgagccgag aggtggaatc 2013420DNAArtificial SequenceOligonucleotide 134ctctctcgct tacactggaa 2013514PRTHomo Sapiens 135Gln Trp Gln Val Phe Gly Pro Asp Lys Pro Val Gln Ala Leu 1 5 10 13615PRTHomo Sapiens 136Ala Lys Trp Lys Gly Pro Gln Gly Gln Asp Leu Ser Thr Asp Ser 1 5 10 15 13732PRTHomo Sapiens 137Asn Met Leu Val Thr Asn Phe Trp Met Ser Thr Ala Asn Met Tyr Thr 1 5 10 15 Gly Met Gly Gly Met Val Gln Thr Val Gln Thr Arg Tyr Thr Phe Gly 20 25 30 13823DNAArtificial SequenceOligonucleotide 138cgtgagcgct tcgagatgtt ccg 2313923DNAArtificial SequenceOligonucleotide 139cctaaccagc tgcccaactg tag 2314020DNAArtificial SequenceOligonucleotide 140ccatgaaagc tccatgtcta 2014120DNAArtificial SequenceOligonucleotide 141ggcaaatgct agagacgtga 20

Claims

1. A method of treating cancer comprising administering to a patient having said cancer a purified antibody or an antigen binding fragment thereof that specifically binds to a deglycosylated epitope of a tumor-associated antigen that is expressed or abnormally expressed on a cell, said tumor-associated antigen being selected from the group consisting of: (a) a tumor-associated antigen comprising the amino acid sequence of SEQ ID NO: 16; and (b) a tumor-associated antigen encoded by a nucleic acid comprising SEQ ID NO: 7, wherein said cancer is selected from the group consisting of lung cancer, pancreatic cancer, esophageal cancer, stomach cancer, gastric carcinoma, liver cancer, ear nose throat (ENT) cancer.

2. The method of claim 1, wherein the purified antibody is a monoclonal, chimeric, or humanized antibody.

3. The method of claim 1, wherein a conjugate between the purified antibody or an antigen binding fragment thereof and at least one therapeutic agent.

4. The method of claim 3, wherein said therapeutic agent is a toxin.

5. The method of claim 3, wherein said therapeutic agent is selected from the group consisting essentially of aminoglutethimide, azathioprine, bleomycin sulfate, busulfan, carmustine, chlorambucil, cisplatin, cyclophosphamide, cyclosporine, cytarabidine, dacarbazine, dactinomycin, daunorubin, doxorubicin, taxol, etoposide, fluorouracil, interferon-.alpha., lomustine, mercaptopurine, methotrexate, mitotane, procarbazine hydrochloride, thioguanine, vinblastine sulfate, and vincristine sulfate.

6. The method of claim 1, wherein the purified antibody or antigen binding fragment and a pharmaceutically compatible carrier are comprised in a pharmaceutical composition.

7. The method of claim 6, wherein the purified antibody causes induction of cell death, reduction in cell growth, cell membrane damage, or secretion of cytokines.

8. The method of claim 7, wherein said purified antibody is a complement-activating antibody, a monoclonal antibody, a chimeric antibody, or a humanized antibody.

9. The method of claim 7, wherein said purified antibody is coupled to a therapeutic agent.

10. The method of claim 9, wherein said therapeutic agent is a toxin.

11. The method of claim 9, wherein said therapeutic agent is selected from the group consisting essentially of aminoglutethimide, azathioprine, bleomycin sulfate, busulfan, carmustine, chlorambucil, cisplatin, cyclophosphamide, cyclosporine, cytarabidine, dacarbazine, dactinomycin, daunorubin, doxorubicin, taxol, etoposide, fluorouracil, interferon-.alpha., lomustine, mercaptopurine, methotrexate, mitotane, procarbazine hydrochloride, thioguanine, vinblastine sulfate and vincristine sulfate.

12. The method of claim 1, wherein the antibody or antigen binding fragment thereof does not bind a glycosylated form of the tumor antigen of SEQ ID NO:16.

13. The method of claim 1, wherein the deglycosylated epitope of SEQ ID NO:16 comprises at least at one amino acid selected from the group consisting of amino acids at position 37, 38, 45, 116, 141, 145, 153, 205, 234, and 237.

14. The method of claim 1, wherein the deglycosylated epitope of SEQ ID NO:16 comprises amino acid position 37.

15. The method of claim 1, wherein the purified antibody is obtained by immunization with a peptide against SEQ ID NO:113.

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