Patent application title: ANTI COVID-19 THERAPIES USING NUCLEOCAPSID AND SPIKE PROTEINS
Inventors:
IPC8 Class: AA61K39215FI
USPC Class:
Class name:
Publication date: 2022-01-27
Patent application number: 20220023415
Abstract:
Compositions and methods are presented for prevention and/or treatment of
a coronavirus disease wherein the composition comprises a recombinant
entity. The recombinant entity comprises a nucleic acid that encodes a
nucleocapsid protein of coronavirus 2 (CoV2); and/or wherein the
recombinant entity encodes a spike protein of CoV2.Claims:
1. A recombinant yeast comprising a nucleic acid encoding a protein
selected from the group consisting of coronavirus 2 (CoV2) nucleocapsid
protein, CoV2 spike protein, and a combination thereof.
2. The recombinant yeast of claim 1, wherein the CoV2 nucleocapsid protein has at least 85% identity to SEQ ID NO:1.
3. The recombinant yeast of claim 2, wherein the CoV2 nucleocapsid protein is fused to an N-ETSD having at least 85% identity to SEQ ID NO:2.
4. The recombinant yeast of claim 1, wherein the CoV2 spike protein has at least 85% identity to SEQ ID NO:4.
5. The recombinant yeast of claim 4, wherein the nucleic acid encoding the CoV2 spike protein has at least 99% identity to SEQ ID NO:5.
6. The recombinant yeast of claim 1, wherein the recombinant yeast further comprises a nucleic acid encoding a trafficking sequence, a co-stimulatory molecule, and/or an immune stimulatory cytokine.
7. The recombinant yeast of claim 6, wherein the co-stimulatory molecule is selected from the group consisting of CD80, CD86, CD30, CD40, CD30L, CD40L, ICOS-L, B7-H3, B7-H4, CD70, OX40L, 4-1BBL, GITR-L, TIM-3, TIM-4, CD48, CD58, TL1A, ICAM-1, and LFA3.
8. The recombinant yeast of claim 6, wherein the immune stimulatory cytokine is selected from the group consisting of IL-2, IL-12, IL-15, nogapendekin alfa-imbakicept, IL-21, IPS1, and LMP1.
9. The method of claim 1, wherein the recombinant yeast is Saccharomyces cerevisiae.
10. A method for inducing immunity against CoV2 in a patient in need thereof, the method comprising administering to the patient the recombinant yeast of claim 1.
Description:
[0001] This application is a divisional application of co-pending US
patent application with the Ser. No. 16/883,263, filed May 26, 2020,
which claims priority to our U.S. provisional patent applications with
the Ser. No. 62/988,328, filed Mar. 11, 2020; 62/991,504 filed on Mar.
18, 2020; 63/009,960 filed Apr. 14, 2020; 63/010,010, filed Apr. 14,
2020; 63/016,048, filed Apr. 27, 2020; 63/016,241, filed Apr. 27, 2020;
and 63/022,146, filed May 8, 2020. Each of these applications are
incorporated by reference in its entirety.
SEQUENCE LISTING
[0002] The content of the ASCII text file of the sequence listing named Sequences 102538.0080US_ST25, which is 23 KB in size was created on Apr. 24, 2020 and electronically submitted via EFS-Web along with the present application. The sequence listing is incorporated by reference in its entirety.
FIELD
[0003] The present disclosure relates to composition, systems, and methods of treating subjects diagnosed or suspected to have Coronavirus Disease 2019 (COVID-19).
BACKGROUND
[0004] The background description includes information that may be useful in understanding the present disclosure. It is not an admission that any of the information provided herein is prior art or relevant to the presently claimed invention, or that any publication specifically or implicitly referenced is prior art.
[0005] All publications and patent applications herein are incorporated by reference to the same extent as if each individual publication or patent application were specifically and individually indicated to be incorporated by reference. Where a definition or use of a term in an incorporated reference is inconsistent or contrary to the definition of that term provided herein, the definition of that term provided herein applies and the definition of that term in the reference does not apply.
[0006] After several noteworthy coronavirus outbreaks in the recent years, including SARS and MERS, COVID-19 is yet another example of a serious infectious disease precipitated by a member of the corona virus family. While diagnostic tests have become available in relatively short time, numerous attempts to treat the disease have so far not had significant success. Most typically, patients with severe symptoms are treated to maintain respiration/blood oxygenation and supportive treatment is provided to reduce or prevent multi-organ damage or even failure. Despite such interventions, the mortality rate is significant, particularly in elderly, immune compromised individuals, and individuals with heart disease, lung disease, or diabetes.
[0007] Thus, even though various methods of addressing symptoms win patients with COVID-19 are known in the art, all or almost all of them suffer from various disadvantages. Consequently, there is a need to provide improved compositions and methods that provide therapeutic effect, that reduce or prevent viral entry into a cell, reduce direct and indirect toxicity of the virus to the patient, and that produce an immune response that is effective to clear the virus from the patient.
SUMMARY
[0008] The present disclosure is directed to various immune therapeutic compositions and methods suitable for treating and/or preventing a coronavirus disease. In one aspect, disclosed herein is a replication defective adenovirus, wherein the adenovirus comprises an E1 gene region deletion; an E2b gene region deletion; and a nucleic acid encoding a protein selected from the group consisting of coronavirus 2 (CoV2) nucleocapsid protein, CoV2 spike protein, and a combination thereof. In a second aspect of this disclosure, provided herein is a recombinant yeast comprising a nucleic acid encoding a protein selected from the group consisting of coronavirus 2 (CoV2) nucleocapsid protein, CoV2 spike protein, and a combination thereof. Preferably, the recombinant yeast is Saccharomyces cerevisiae.
[0009] In one embodiment of each of the above two aspects, the CoV2 nucleocapsid protein has at least 85% identity to SEQ ID NO:1. In some cases, the CoV2 nucleocapsid protein of SEQ ID NO:1 is fused to an endosomal targeting sequence (N-ETSD), wherein the N-ETSD has at least 85% identity to SEQ ID NO:2. It is further contemplated that the fusion protein contains a linker between the N-ETSD domain and the nucleocapsid protein. For example this linker may be a 16 amino acid linker having the sequence (GGGS).sub.4. The CoV2 spike protein is contemplated to have at least 85% identity to SEQ ID NO:4. The nucleic acid encoding the CoV2 spike protein has at least 99% identity to SEQ ID NO:5
[0010] In another embodiment of this disclosure, the adenoviruses and yeasts disclosed herein may further comprise a nucleic acid encoding a trafficking sequence, a co-stimulatory molecule, and/or an immune stimulatory cytokine. The co-stimulatory molecule is selected from the group consisting of CD80, CD86, CD30, CD40, CD30L, CD40L, ICOS-L, B7-H3, B7-H4, CD70, OX40L, 4-1BBL, GITR-L, TIM-3, TIM-4, CD48, CD58, TL1A, ICAM-1, and LFA3. The immune stimulatory cytokine may be selected from the group consisting of IL-2, IL-12, IL-15, nogapendekin alfa-imbakicept, IL-21, IPS1, and LMP1.
[0011] In yet another embodiment, disclosed herein is a vaccine composition comprising the adenovirus or yeast as disclosed above, and wherein the composition is formulated for injection. The vaccine composition may be used for inducing immunity against CoV2 in a patient in need thereof, by administering to the patient the vaccine composition
[0012] In another aspect, the method includes administering to the subject an immunotherapy composition comprising a recombinant entity, wherein the recombinant entity comprises a nucleic acid that encodes a nucleocapsid protein of coronavirus 2 (CoV2) and/or a spike protein of CoV2. In one embodiment, the nucleocapsid protein is ETSD.
[0013] Preferably, the nucleic acid that encodes a nucleocapsid protein of coronavirus 2 further encodes a trafficking sequence for the nucleocapsid protein. It is further contemplated that the recombinant entity may also comprise a sequence that encodes at least one of a co-stimulatory molecule and an immune stimulatory cytokine. The co-stimulatory molecule is selected from the group consisting of CD80, CD86, CD30, CD40, CD30L, CD40L, ICOS-L, B7-H3, B7-H4, CD70, OX40L, 4-1BBL, GITR-L, TIM-3, TIM-4, CD48, CD58, TL1A, ICAM-1, and LFA3. The immune stimulatory cytokine is selected from the group consisting of IL-2, IL-12, IL-15, IL-15 super agonist (N803), IL-21, IPS1, and LMP1. In some preferred embodiments, the immune stimulatory cytokine is IL-15 super agonist N803.
[0014] The immunotherapy compositions disclosed herein to be administered subcutaneously or intravenously.
[0015] The recombinant entity contemplated herein may be a recombinant virus, such as a recombinant adenovirus. The recombinant entity may also be a recombinant yeast, such as Saccharomyces cerevisiae.
[0016] In some preferred embodiments, the coronavirus disease is COVID-19.
[0017] In yet another aspect of the present disclosure, disclosed herein is a vaccine formulation comprising a recombinant entity, wherein the recombinant entity comprises a nucleic acid that encodes a nucleocapsid protein of coronavirus 2 (CoV2); and/or wherein the recombinant entity encodes a spike protein of CoV2. As discussed throughout, the recombinant entity is preferably a recombinant adenovirus or Saccharomyces cerevisiae. The vaccine formulation may administered to a patient having a coronavirus disease for treatment and/or prevention of the coronavirus disease.
[0018] Various objects, features, aspects, and advantages will become more apparent from the following detailed description of preferred embodiments, along with the accompanying drawing in which like numerals represent like components.
BRIEF DESCRIPTION OF THE DRAWING
[0019] FIG. 1 exemplarily depicts vaccine constructs for Phase 1b clinical trials.
[0020] FIG. 2 exemplarily depicts in vitro Expression, Construct Expression via Western Blot, and detection of spike and nucleocapsid expression in by Western Blot.
[0021] FIG. 3 exemplarily depicts COVID-19 vaccine constructs.
[0022] FIG. 4 exemplarily depicts antibody response to N with a Th1 phenotype. Humoral Immune Responses TH1 vs TH2 associated isotype analysis is shown.
[0023] FIG. 5 exemplarily depicts cell mediated immunity (CMI) response to N focus phenotype--IFN-.gamma. and IL-2 ELISpot.
[0024] FIG. 6 exemplarily depicts enhanced cell surface expression of RBD with S Fusion and with S Fusion+N combination constructs compared to S-WT.
[0025] FIG. 7 exemplarily depicts that recovered COVID-19 patient plasma recognizes antigens expressed by NANT's RBD-ETSD and NANT fusion S/N-ETSD constructs.
DETAILED DESCRIPTION
[0026] Disclosed herein are recombinant viruses and yeasts. The viruses and yeasts disclosed herein may be useful for a variety of purposes, such as treating and/or preventing a coronavirus disease. In one aspect, disclosed herein is a replication defective adenovirus, wherein the adenovirus comprises an E1 gene region deletion; an E2b gene region deletion; and a nucleic acid encoding a protein selected from the group consisting of coronavirus 2 (CoV2) nucleocapsid protein, CoV2 spike protein, and a combination thereof.
[0027] In some embodiment, the CoV2 nucleocapsid protein comprises a sequence with at least 80% identity to SEQ ID NO:1. In other embodiments, the identity value is at least 85%. In still other embodiments, the identity value is at least 90%. In some embodiments, the identity value is at least 95%. In some embodiments, the identity value is at least 99%. In some embodiments, the identity value is 100%.
[0028] In some embodiment, the CoV2 nucleocapsid protein is fused to an endosomal targeting sequence (N-ETSD). In principle, any intracellular antigen can be driven to expression on the cell surface by tagging the antigen with ETSD as described herein. In one embodiment, the N-ETSD may comprises a sequence with at least 80% identity to SEQ ID NO:2. In other embodiments, the identity value is at least 85%. In still other embodiments, the identity value is at least 90%. In some embodiments, the identity value is at least 95%. In some embodiments, the identity value is at least 99%. In some embodiments, the identity value is 100%. It is further contemplated that the fusion protein contains a linker between the N-ETSD domain and the nucleocapsid protein. For example this linker may be a 16 amino acid linker having the sequence (GGGS).sub.4. In certain embodiments, methods are disclosed herein for enhancing the immunogenicity of an intracellular antigen, the methods comprising tagging the antigen with ETSD and expressing the tagged antigen in an antigen-presenting cell (e.g., a dendritic cell).
[0029] In some embodiments, the fusion protein comprising N-ETSD and CoV2 nucleocapsid protein may be encoded by a nucleic acid sequence having at least 80% identity to SEQ ID NO:3. In some embodiments, the identity value is at least 85%. In some embodiments, the identity value is at least 90%. In some embodiments, the identity value is at least 95%. In some embodiments, the identity value is at least 99%. In some embodiments, the identity value is 100%.
[0030] The CoV2 spike protein is contemplated to have at least 85% identity to SEQ ID NO:4. The nucleic acid encoding the CoV2 spike protein has at least 99% identity to SEQ ID NO:5
[0031] In a second aspect of this disclosure, provided herein is a recombinant yeast comprising a nucleic acid encoding a protein selected from the group consisting of coronavirus 2 (CoV2) nucleocapsid protein, CoV2 spike protein, and a combination thereof. Preferably, the recombinant yeast is Saccharomyces cerevisiae.
[0032] In some embodiments of this second aspect, the CoV2 nucleocapsid protein comprises a sequence with at least 80% identity to SEQ ID NO:1. In other embodiments, the identity value is at least 85%. In still other embodiments, the identity value is at least 90%. In some embodiments, the identity value is at least 95%. In some embodiments, the identity value is at least 99%. In some embodiments, the identity value is 100%.
[0033] In some embodiment of this second aspect, the CoV2 spike protein comprises a sequence with at least 80% identity to SEQ ID NO:4. In other embodiments, the identity value is at least 85%. In still other embodiments, the identity value is at least 90%. In some embodiments, the identity value is at least 95%. In some embodiments, the identity value is at least 99%. In some embodiments, the identity value is 100%.
[0034] In some embodiments, the nucleic acid encoding the CoV2 spike protein comprises a sequence with at least 80% identity to SEQ ID NO:5. In other embodiments, the identity value is at least 85%. In still other embodiments, the identity value is at least 90%. In some embodiments, the identity value is at least 95%. In some embodiments, the identity value is at least 99%. In some embodiments, the identity value is 100%.
[0035] The adenoviruses and yeasts disclosed herein may further comprise a nucleic acid encoding a trafficking sequence, a co-stimulatory molecule, and/or an immune stimulatory cytokine. The co-stimulatory molecule is selected from the group consisting of CD80, CD86, CD30, CD40, CD30L, CD40L, ICOS-L, B7-H3, B7-H4, CD70, OX40L, 4-1BBL, GITR-L, TIM-3, TIM-4, CD48, CD58, TL1A, ICAM-1, and LFA3. The immune stimulatory cytokine may be selected from the group consisting of IL-2, IL-12, IL-15, nogapendekin alfa-imbakicept, IL-21, IPS1, and LMP1. Additionally or alternatively, the vaccines disclosed herein may also encode SARS-CoV-2 M protein, with or without an ETSD tag.
[0036] In yet another embodiment, disclosed herein is a vaccine composition comprising the adenovirus or yeast as disclosed above, and wherein the composition is formulated for injection. The vaccine composition may be used for inducing immunity against CoV2 in a patient in need thereof, by administering to the patient the vaccine composition
[0037] Also disclosed herein are methods for preventing and/or treating coronavirus diseases, and especially COVID-19. Preferably, the method includes using a viral or yeast vector that encodes the nucleocapsid protein and/or spike protein of the coronavirus in an immunogenic composition that is administered to a subject individual. The virus and/or yeast vaccine, thus administered, would infect the individual with CoV2 nucleocapsid or spike protein. With that in place, the individual would have an immune response against it, and be vaccinated. Notably, as the nucleocapsid protein and the spike protein are relatively conserved polypeptides, immune responses can be elicited for a variety of members of the coronavirus family.
[0038] Where the recombinant vector is an adenovirus, the adenoviral vector may be modified to encode the nucleocapsid protein, and/or the spike protein. Similarly, in case of yeast, the yeast vector may also be modified to encode the nucleocapsid protein, and/or the spike protein. Positive responses were obtained on cell mediated immunity upon administration of immunogenic compositions comprising the viral and/or yeast vectors in patients in need thereof. Thus, in one embodiment, the present disclosure envision creating the coronaviral spikes to be expressed on the yeast surface. So, in this embodiment, the yeast is acting as an avatar coronavirus to stimulate the B cells. The stimulation of the B cells then results in humoral immunity.
Coronaviruses
[0039] Coronaviruses are found in avian and mammalian species. They resemble each other in morphology and chemical structure: for example, the coronaviruses of humans and cattle are antigenically related. There is no evidence, however, that human coronaviruses can be transmitted by animals. In animals, various coronaviruses invade many different tissues and cause a variety of diseases in humans. One such disease was Severe acute respiratory syndrome (SARS) coronavirus disease that spread to several countries in Asia, Europe and North America in late 2002/early 2003. Another such disease is the novel Coronavirus Disease of 2019 (COVID 19) that has spread to several countries in the world.
[0040] COVID 19 usually begins with a fever greater than 38.degree. C. Initial symptoms can also include cough, sore throat, malaise and mild respiratory symptoms. Within two days to a week, patients may have trouble breathing. Patients in more advanced stages of COVID 19 develop either pneumonia or respiratory distress syndrome. Public health interventions, such as surveillance, travel restrictions and quarantines, are being used to contain the spread of COVID 19. It is unknown, however, whether these draconian containment measures can be sustained with each appearance of the COVID 19 in humans. Furthermore, the potential of this new and sometimes lethal CoV as a bio-terrorism threat is obvious.
[0041] Coronavirus virions are spherical to pleomorphic enveloped particles. The envelope is studded with projecting glycoproteins, and surrounds a core consisting of matrix protein enclosed within which is a single strand of positive-sense RNA (Mr 6.times.10.sup.6) associated with nucleocapsid protein. In that regard, it should be noted that the terms "nucleocapsid protein," "nucleoprotein," and "nucleocapsid" are used interchangeably throughout this disclosure. The coronavirus nucleocapsid (N) is a structural protein found in all coronaviruses, including COVID 19. The nucleocapsid protein forms complexes with genomic RNA, interacts with the viral membrane protein during virion assembly and plays a critical role in enhancing the efficiency of virus transcription and assembly.
[0042] Another protein found throughout all coronavirus virions is the viral spike(S) protein. Coronaviruses are large positive-stranded RNA viruses typically with a broad host range. Like other enveloped viruses, CoV enter target cells by fusion between the viral and cellular membranes, and that process is mediated by the viral spike (S) protein.
[0043] The methods and compositions disclosed herein target the nucleoprotein and the spike protein that is conserved in all types of coronaviruses. In one embodiment, the present disclosure provides a vaccine formulation comprising a recombinant entity, wherein the recombinant entity comprises a nucleic acid that encodes a nucleocapsid protein of coronavirus 2 (CoV2); and/or wherein the recombinant entity encodes a spike protein of CoV2. The vaccine formulation may be useful for treating a disease, such as a coronavirus mediated disease or infection. Thus, in another embodiment, disclosed is a method for treating a coronavirus disease, in a patient in need thereof, comprising: administering to the subject an immunotherapy composition comprising a recombinant entity, wherein the recombinant entity comprises a nucleic acid that encodes a nucleocapsid protein of coronavirus 2 (CoV2). The coronavirus contemplated herein may be coronavirus disease 2019 (COVID-19) and/or severe acute respiratory syndrome coronavirus 2 (SARS-CoV2)
[0044] The instant disclosure also provides a method for treating coronavirus disease 2019 (COVID-19) and/or severe acute respiratory syndrome coronavirus 2 (SARS-CoV2), in a patient in need thereof, comprising: administering to the subject a first immunotherapy composition comprising a recombinant virus, wherein the recombinant virus comprises a nucleic acid that encodes a nucleocapsid protein of coronavirus 2 (CoV2), administering to the subject a second immunotherapy composition comprising a recombinant yeast, wherein the recombinant yeast comprises a nucleic acid that encodes a spike protein of CoV2. The first and second immunotherapy compositions may be administered concurrently or sequentially to the patient.
[0045] Viewed form a different perspective, contemplated herein is a viral vector (e.g., recombinant adenovirus genome, optionally with a deleted or non-functional E2b gene) that comprises a nucleic acid that encodes (a) at least a nucleocapsid protein; and (b) at least one spike protein. The viral vector may further comprise co-stimulatory molecule. Most typically, the nucleic acid will further include a trafficking signal to direct a peptide product encoded by the nucleic acid to the cytoplasm, the endosomal compartment, or the lysosomal compartment, and the peptide product will further comprise a sequence portion that enhances intracellular turnover of the peptide product.
Recombinant Viruses
[0046] With respect to recombinant viruses it is contemplated that all known manners of making recombinant viruses are deemed suitable for use herein, however, especially preferred viruses are those already established in therapy, including adenoviruses, adeno-associated viruses, alphaviruses, herpes viruses, lentiviruses, etc. Among other appropriate choices, adenoviruses are particularly preferred.
[0047] Moreover, it is further generally preferred that the virus is a replication deficient and non-immunogenic virus. For example, suitable viruses include genetically modified alphaviruses, adenoviruses, adeno-associated viruses, herpes viruses, lentiviruses, etc. However, adenoviruses are particularly preferred. For example, genetically modified replication defective adenoviruses are preferred that are suitable not only for multiple vaccinations but also vaccinations in individuals with preexisting immunity to the adenovirus (see e.g., WO 2009/006479 and WO 2014/031178, which are incorporated by reference in its entirety). In some embodiments, the replication defective adenovirus vector comprises a replication defective adenovirus 5 vector. In some embodiments, the replication defective adenovirus vector comprises a deletion in the E2b region. In some embodiments, the replication defective adenovirus vector further comprises a deletion in the E1 region. In that regard, it should be noted that deletion of the E2b gene and other late proteins in the genetically modified replication defective adenovirus to reduce immunogenicity. Moreover, due to these specific deletions, such genetically modified viruses were replication deficient and allowed for relatively large recombinant cargo.
[0048] For example, WO 2014/031178 describes the use of such genetically modified viruses to express CEA (colorectal embryonic antigen) to provide an immune reaction against colon cancer. Moreover, relatively high titers of recombinant viruses can be achieved using genetically modified human 293 cells as has been reported (e.g., J Virol. 1998 February; 72(2): 926-933).
[0049] E1-deleted adenovirus vectors Ad5 [E1-] are constructed such that a trans gene replaces only the E1 region of genes. Typically, about 90% of the wild-type Ad5 genome is retained in the vector. Ad5 [E1-] vectors have a decreased ability to replicate and cannot produce infectious virus after infection of cells not expressing the Ad5 E1 genes. The recombinant Ad5 [E1-] vectors are propagated in human cells allowing for Ad5 [E1-] vector replication and packaging. Ad5 [E1-] vectors have a number of positive attributes; one of the most important is their relative ease for scale up and cGMP production. Currently, well over 220 human clinical trials utilize Ad5 [E1-] vectors, with more than two thousand subjects given the virus sc, im, or iv. Additionally, Ad5 vectors do not integrate; their genomes remain episomal. Generally, for vectors that do not integrate into the host genome, the risk for insertional mutagenesis and/or germ-line transmission is extremely low if at all. Conventional Ad5 [E1-] vectors have a carrying capacity that approaches 7 kb.
[0050] One obstacle to the use of first generation (E1-deleted) Ad5-based vectors is the high frequency of pre-existing anti-adeno virus type 5 neutralizing antibodies. Attempts to overcome this immunity is described in WO 2014/031178, which is incorporated by reference herein. Specifically, a novel recombinant Ad5 platform has been described with deletions in the early 1 (E1) gene region and additional deletions in the early 2b (E2b) gene region (Ad5 [E1-, E2b-]). Deletion of the E2b region (that encodes DNA polymerase and the pre-terminal protein) results in decreased viral DNA replication and late phase viral protein expression. E2b deleted adenovirus vectors provide an improved Ad-based vector that is safer, more effective, and more versatile than First Generation adenovirus vectors.
[0051] In a further embodiment, the adenovirus vectors contemplated for use in the present disclosure include adenovirus vectors that have a deletion in the E2b region of the Ad genome and, optionally, deletions in the E1, E3 and, also optionally, partial or complete removal of the E4 regions. In a further embodiment, the adenovirus vectors for use herein have the E1 and/or the preterminal protein functions of the E2b region deleted. In some cases, such vectors have no other deletions. In another embodiment, the adenovirus vectors for use herein have the E1, DNA polymerase and/or the preterminal protein functions deleted.
[0052] The term "E2b deleted", as used herein, refers to a specific DNA sequence that is mutated in such a way so as to prevent expression and/or function of at least one E2b gene product. Thus, in certain embodiments, "E2b deleted" is used in relation to a specific DNA sequence that is deleted (removed) from the Ad genome. E2b deleted or "containing a deletion within the E2b region" refers to a deletion of at least one base pair within the E2b region of the Ad genome. Thus, in certain embodiments, more than one base pair is deleted and in further embodiments, at least 20, 30, 40, 50, 60, 70, 80, 90, 100, 110, 120, 130, 140, or 150 base pairs are deleted. In another embodiment, the deletion is of more than 150, 160, 170, 180, 190, 200, 250, or 300 base pairs within the E2b region of the Ad genome. An E2b deletion may be a deletion that prevents expression and/or function of at least one E2b gene product and therefore, encompasses deletions within exons of encoding portions of E2b-specific proteins as well as deletions within promoter and leader sequences. In certain embodiments, an E2b deletion is a deletion that prevents expression and/or function of one or both of the DNA polymerase and the preterminal protein of the E2b region. In a further embodiment, "E2b deleted" refers to one or more point mutations in the DNA sequence of this region of an Ad genome such that one or more encoded proteins is non-functional. Such mutations include residues that are replaced with a different residue leading to a change in the amino acid sequence that result in a nonfunctional protein.
[0053] As noted before, the desired nucleic acid sequences (for expression from virus infected cells) are under the control of appropriate regulatory elements well known in the art. In view of the above, it should be appreciated that compositions and methods presented are not only suitable for directing virally expressed antigens specifically to one or another (or both) MHC systems, but will also provide increased stimulatory effect on the CD8+ and/or CD4+ cells via inclusion of various co-stimulatory molecules (e.g., ICAM-1 (CD54), ICOS-L, LFA-3 (CD58), and at least one of B7.1 (CD80) and B7.2 (CD86)), and via secretion or membrane bound presentation of checkpoint inhibitors.
[0054] With respect to viral expression and vaccination systems it is contemplated that all therapeutic recombinant viral expression systems are deemed suitable for use herein so long as such viruses are capable to lead to expression of the recombinant payload in an infected cell.
[0055] Regardless of the type of recombinant virus it is contemplated that the virus may be used to infect patient (or non-patient) cells ex vivo or in vivo. For example, the virus may be injected subcutaneously or intravenously, or may be administered intranasaly or via inhalation to so infect the patient's cells, and especially antigen presenting cells. Alternatively, immune competent cells (e.g., NK cells, T cells, macrophages, dendritic cells, etc.) of the patient (or from an allogeneic source) may be infected in vitro and then transfused to the patient. Alternatively, immune therapy need not rely on a virus but may be effected with nucleic acid transfection or vaccination using RNA or DNA, or other recombinant vector that leads to the expression of the neoepitopes (e.g., as single peptides, tandem mini-gene, etc.) in desired cells, and especially immune competent cells.
[0056] As noted above, the desired nucleic acid sequences (for expression from virus infected cells) are under the control of appropriate regulatory elements well known in the art. For example, suitable promoter elements include constitutive strong promoters (e.g., SV40, CMV, UBC, EF1A, PGK, CAGG promoter), but inducible promoters are also deemed suitable for use herein, particularly where induction conditions are typical for a tumor microenvironment. For example, inducible promoters include those sensitive to hypoxia and promoters that are sensitive to TGF-.beta. or IL-8 (e.g., via TRAF, JNK, Erk, or other responsive elements promoter). In other examples, suitable inducible promoters include the tetracycline-inducible promoter, the myxovirus resistance 1 (Mx1) promoter, etc.
[0057] The replication defective adenovirus comprising an E1 gene region deletion, an E2b gene region deletion, and a nucleic acid encoding a coronavirus 2 (CoV2) nucleocapsid protein and/or a CoV2 spike protein, as disclosed herein may be administered to a patient in need for inducing immunity against CoV2. Routes and frequency of administration of the therapeutic compositions described herein, as well as dosage, may vary from individual to individual, and the severity of the disease, and may be readily established using standard techniques. In some embodiments, the administration comprises delivering 4.8-5.2.times.10.sup.11 replication defective adenovirus particles, or 4.9-5.1.times.10.sup.11 replication defective adenovirus particles, or 4.95-5.05.times.10.sup.11 replication defective adenovirus particles, or 4.99-5.01.times.10.sup.11 replication defective adenovirus particles.
[0058] The administration of the virus particles can be through a variety of suitable paths for delivery. One preferred route contemplated herein is by injection, such as intracutaneous injection, intramuscular injection, intravenous injection or subcutaneous injection. In some embodiments, a subcutaneous delivery may be preferred.
Recombinant Yeasts
[0059] With respect to yeast expression and vaccination systems, it is contemplated that all known yeast strains are deemed suitable for use herein. However, it is preferred that the yeast is a recombinant Saccharomyces strain that is genetically modified with a nucleic acid construct encoding a protein selected from the group consisting of coronavirus 2 (CoV2) nucleocapsid protein, CoV2 spike protein, and a combination thereof, to thereby initiate an immune response against the CoV2 viral disease. In one aspect of any of the embodiments of the disclosure described above or elsewhere herein, the yeast vehicle is a whole yeast. The whole yeast, in one aspect is killed. In one aspect, the whole yeast is heat-inactivated. In one preferred embodiment, the yeast is a whole, heat-inactivated yeast from Saccharomyces cerevisiae.
[0060] The use of a yeast based therapeutic compositions are disclosed in the art. For example, WO 2012/109404 discloses yeast compositions for treatment of chronic hepatitis b infections.
[0061] It is noted that any yeast strain can be used to produce a yeast vehicle of the present disclosure. Yeasts are unicellular microorganisms that belong to one of three classes: Ascomycetes, Basidiomycetes and Fungi Imperfecti. One consideration for the selection of a type of yeast for use as an immune modulator is the pathogenicity of the yeast. In preferred embodiments, the yeast is a non-pathogenic strain such as Saccharomyces cerevisiae as non-pathogenic yeast strains minimize any adverse effects to the individual to whom the yeast vehicle is administered. However, pathogenic yeast may also be used if the pathogenicity of the yeast can be negated using pharmaceutical intervention.
[0062] For example, suitable genera of yeast strains include Saccharomyces, Candida, Cryptococcus, Hansenula, Kluyveromyces, Pichia, Rhodotorula, Schizosaccharomyces and Yarrowia. In one aspect, yeast genera are selected from Saccharomyces, Candida, Hansenula, Pichia or Schizosaccharomyces, and in a preferred aspect, Saccharomyces is used. Species of yeast strains that may be used include Saccharomyces cerevisiae, Saccharomyces carlsbergensis, Candida albicans, Candida kefyr, Candida tropicalis, Cryptococcus laurentii, Cryptococcus neoformans, Hansenula anomala, Hansenula polymorpha, Kluyveromyces fragilis, Kluyveromyces lactis, Kluyveromyces marxianus var. lactis, Pichia pastoris, Rhodotorula rubra, Schizosaccharomyces pombe, and Yarrowia lipolytica.
[0063] It should further be appreciated that a number of these species include a variety of subspecies, types, subtypes, etc. that are intended to be included within the aforementioned species. In one aspect, yeast species used in the instant disclosure include S. cerevisiae, C. albicans, H. polymorpha, P. pastoris and S. pombe. S. cerevisiae is useful due to it being relatively easy to manipulate and being "Generally Recognized As Safe" or "GRAS" for use as food additives (GRAS, FDA proposed Rule 62FR18938, Apr. 17, 1997). Therefore, particularly contemplated herein is a yeast strain that is capable of replicating plasmids to a particularly high copy number, such as a S. cerevisiae cir strain. The S. cerevisiae strain is one such strain that is capable of supporting expression vectors that allow one or more target antigen(s) and/or antigen fusion protein(s) and/or other proteins to be expressed at high levels. In addition, any mutant yeast strains can be used, including those that exhibit reduced post-translational modifications of expressed target antigens or other proteins, such as mutations in the enzymes that extend N-linked glycosylation.
[0064] Expression of contemplated peptides/proteins in yeast can be accomplished using techniques known to those skilled in the art. Most typically, a nucleic acid molecule encoding at least one protein is inserted into an expression vector such manner that the nucleic acid molecule is operatively linked to a transcription control sequence to be capable of effecting either constitutive or regulated expression of the nucleic acid molecule when transformed into a host yeast cell. As will be readily appreciated, nucleic acid molecules encoding one or more proteins can be on one or more expression vectors operatively linked to one or more expression control sequences. Particularly important expression control sequences are those which control transcription initiation, such as promoter and upstream activation sequences.
[0065] Any suitable yeast promoter can be used in the methods and compositions of the present disclosure and a variety of such promoters are known to those skilled in the art and have generally be discussed above. Promoters for expression in Saccharomyces cerevisiae include promoters of genes encoding the following yeast proteins: alcohol dehydrogenase I (ADH1) or II (ADH2), CUP1, phosphoglycerate kinase (PGK), triose phosphate isomerase (TPI), translational elongation factor EF-1 alpha (TEF2), glyceraldehyde-3-phosphate dehydrogenase (GAPDH; also referred to as TDH3, for triose phosphate dehydrogenase), galactokinase (GAL1), galactose-1-phosphate uridyl-transferase (GAL7), UDP-galactose epimerase (GAL10), cytochrome c1 (CYC1), Sec7 protein (SECT) and acid phosphatase (PHO5), including hybrid promoters such as ADH2/GAPDH and CYC1/GAL10 promoters, and including the ADH2/GAPDH promoter, which is induced when glucose concentrations in the cell are low (e.g., about 0.1 to about 0.2 percent), as well as the CUP1 promoter and the TEF2 promoter. Likewise, a number of upstream activation sequences (UASs), also referred to as enhancers, are known. Upstream activation sequences for expression in Saccharomyces cerevisiae include the UASs of genes encoding the following proteins: PCK1, TPI, TDH3, CYC1, ADH1, ADH2, SUC2, GAL1, GAL7 and GAL10, as well as other UASs activated by the GAL4 gene product, with the ADH2 UAS being used in one aspect. Since the ADH2 UAS is activated by the ADR1 gene product, it may be preferable to overexpress the ADR1 gene when a heterologous gene is operatively linked to the ADH2 UAS. Transcription termination sequences for expression in Saccharomyces cerevisiae include the termination sequences of the alpha-factor, GAPDH, and CYC1 genes. Transcription control sequences to express genes in methyltrophic yeast include the transcription control regions of the genes encoding alcohol oxidase and formate dehydrogenase.
[0066] Likewise, transfection of a nucleic acid molecule into a yeast cell according to the present disclosure can be accomplished by any method by which a nucleic acid molecule administered into the cell and includes diffusion, active transport, bath sonication, electroporation, microinjection, lipofection, adsorption, and protoplast fusion. Transfected nucleic acid molecules can be integrated into a yeast chromosome or maintained on extrachromosomal vectors using techniques known to those skilled in the art. As discussed above, yeast cytoplast, yeast ghost, and yeast membrane particles or cell wall preparations can also be produced recombinantly by transfecting intact yeast microorganisms or yeast spheroplasts with desired nucleic acid molecules, producing the antigen therein, and then further manipulating the microorganisms or spheroplasts using techniques known to those skilled in the art to produce cytoplast, ghost or subcellular yeast membrane extract or fractions thereof containing desired antigens or other proteins. Further exemplary yeast expression systems, methods, and conditions suitable for use herein are described in US20100196411A1, US2017/0246276, or US 2017/0224794, and US 2012/0107347.
[0067] So produced recombinant viruses and yeasts may then be individually or in combination used as a therapeutic vaccine in a pharmaceutical composition, typically formulated as a sterile injectable composition with a virus of between 10.sup.4-10.sup.13 virus or yeast particles per dosage unit, or more preferably between 10.sup.9-10.sup.12 virus or yeast particles per dosage unit. Alternatively, virus or yeast may be employed to infect patient cells ex vivo and the so infected cells are then transfused to the patient. However, alternative formulations are also deemed suitable for use herein, and all known routes and modes of administration are contemplated herein.
Second Generation hAd5 [E1-, E2b-, E3-] Based Vaccines Disclosed Herein Overcome Pre-Existing Anti-Ad5 Immunity
[0068] To avoid the Ad immunization barrier and circumvent the adverse conditions for first generation Ad5 [E1-E3-] vectors, an advanced 2nd generation human adenoviral (hAd5) vector was constructed having two (2) additional deletions in the E2b region, removing the DNA polymerase and the preterminal protein genes [E1-, E2b-, E3-]. (Former names of our adenovirus vector were Ad5, ETBX in literature)
[0069] E2b-deleted hAd5 vectors have up to a 12-14 kb gene-carrying capacity as compared to the 7-kb capacity of first generation Ad5 [E1-] vectors, providing space for multiple genes if needed. hAd5 [E1-, E2b-, E3-] based recombinant vectors are produced using the human E.C7 cell line. Deletion of the E2b region also confers advantageous immune properties on these novel Ad vectors, eliciting potent immune responses to specific, non-viral antigens while minimizing the immune responses to Ad viral proteins.
[0070] hAd5 [E1-, E2b-, E3-] vectors induce a potent cell mediated immune (CMI) response, as well as Abs against the vectored antigens even in the presence of Ad immunity. hAd5 [E1-, E2b-, E3-] vectors also have reduced adverse reactions as compared to Ad5 [E1-] vectors, in particular the appearance of hepatotoxicity and tissue damage. In one embodiment, the reduced inflammatory response against hAd5 [E1-, E2b-, E3-] vector viral proteins and the resulting evasion of pre-existing Ad immunity increases the capability for the hAd5 [E1-, E2b-, E3-] vectors to infect dendritic cells (DC), resulting in greater immunization of the vaccine. In addition, increased infection of other cell types provides high levels of antigen presentation needed for a potent CD8+ and CD4+ T cell responses, leading to memory T cell development. In one embodiment, hAd5 [E1-, E2b-, E3-] vectors are superior to Ad5 [E1-] vectors in immunogenicity and safety and will be the best platform to develop a COVID-19 vaccine in a rapid and efficient manner. In one embodiment, a prophylactic vaccine is tested against COVID-19 by taking advantage of this new hAd5 vector system that overcomes barriers found with other Ad5 systems and permits the immunization of people who have previously been exposed to Ad5.
Track Record of Rapid Vaccine Development Utilizing Second Generation Human (hAd5) Adenovirus Platform During Pandemic Treats: H1N1 Experience in 2009
[0071] To address emerging pathogen threats, especially in times of pandemic, it is critical that modernized vaccine technologies be deployed. These technologies will utilize the power of genomic sequencing, rapid transfection in well-established vaccine vectors to rapidly identify constructs with high immunogenicity.
[0072] Vaccines against emerging pathogens such as the 2009 H1N1 pandemic virus can benefit from current technologies such as rapid genomic sequencing to construct the most biologically relevant vaccine. A novel platform (hAd5 [E1-, E2b-, E3-]) has been utilized to induce immune responses to various antigenic targets. This vector platform expressed hemagglutinin (HA) and neuraminidase (NA) genes from 2009 H1N1 pandemic viruses. Inserts were consensuses sequences designed from viral isolate sequences and the vaccine was rapidly constructed and produced. Vaccination induced H1N1 immune responses in mice, which afforded protection from lethal virus challenge. In ferrets, vaccination protected from disease development and significantly reduced viral titers in nasal washes. H1N1 cell mediated immunity as well as antibody induction correlated with the prevention of disease symptoms and reduction of virus replication. The hAd5 [E1-, E2b-, E3-] has thus demonstrated the capability for the rapid development of effective vaccines against infectious diseases.
hAd5 Vaccine Constructs and Results
[0073] Disclosed herein are constructs that have been constructed and tested, a hAd5-COVID-19 vaccine construct E1-, E2b-, E3-hAd5 vector with SARS-CoV-2 (S/N) protein insert (FIG. 1). This construct has been tested in preclinical experiments, including in vitro expression (FIG. 2) and small animal immunogenicity.
[0074] In addition, ImmunityBio has developed multiple COVID-19 constructs including RBD-alone, S1-alone, S1-fusion proteins, and combinations of RBD, S1 and S1 fusions with N. Preliminary in-vitro studies demonstrate that these constructs (FIG. 3) recognize convalescent serum antibodies and could serve as alternative vaccines following analysis of the two (2) constructs above (FIG. 1) which is intended to initiate in our first in human Phase 1b study.
Rationale for Inclusion of Nucleocapsid (N) in hAd5 Constructs for COVID-19
[0075] The nucleocapsid (N) protein of SARS-CoV-2 is highly conserved and highly expressed. Previous research with the related coronavirus that causes SARS demonstrated that N protein is immunogenic (Gupta, 2006), when integrated with intracellular trafficking constructs. To date, vaccine strategies in development all involve developing immunogenicity against spike (S) protein. However, very recent evidence in patients who recovered from COVID-19 demonstrates Th1 immunity generated against the nucleocapsid (N) (Grifoni, 2020). A second report by Grifoni et al. further confirmed that in the predictive bioinformatics model, T and B cell epitopes were highest for both spike glycoprotein and nucleoprotein (Grifoni, 2020). The present disclosure confirms the potential that combining S with N, that long-term cell-mediated immunity with a Th1 phenotype can be induced. The potential exists for this combination vaccine to serve as a long-term "universal" COVID-19 vaccine in light of mutations undergoing in S and the finding that the structural N protein is highly conserved in the coronavirus family. The clinical trial is designed to compare S alone versus S+N, to demonstrate safety and to better inform the immunogenicity of S and S+N. A single construct having S & N would be selected to induce potent humoral and cell mediated immunity.
Immunogenicity Studies (Small Animal Model):
[0076] Homologous prime-boost immunogenicity in BALB-c mice. Mice have been treated with 1, 2 or 3 doses of the hAd5 COVID-19 vaccine and serum and splenocyte samples are being tested for SARS-CoV-2 antigen-specific immune responses. Serum is tested for anti-spike and anti-nucleocapsid antibody responses by ELISA. Splenocytes is tested for spike- and nucleocapsid-specific cell mediated immune responses by ELISPOT and intracellular cytokine simulation assays.
[0077] The results show promising immunogenic activity. In one embodiment, hAd5 [E1-,E2b-, E3-] N-ETSD, a vaccine containing SARS-CoV-2 nucleocapsid plus an enhanced T cell stimulation domain (ETSD), alters T cell responses to nucleocapsid. Mice were immunized subcutaneously (SC) with a dose of 1010 VP twice at 7-day intervals. Blood was collected at several time points and spleen was collected upon sacrifice in order to perform immunogenicity experiments. Splenocytes were isolated and tested for cell mediated immune (CMI) responses. The results showed that SARS-CoV-2 nucleocapsid antigen specific CMI responses were detected by ELISpot and flow cytometry analyses in the spleens of all the mice immunized with hAd5 [E1-, E2b-, E3-] N-ETSD vaccine but not vector control (hAd5 [E1-, E2b-, E3-] null) immunized mice.
[0078] In addition, antibody responses were detected in all the mice immunized with hAd5 [E1-, E2b-, E3-]-N-ETSD vaccine but not vector control (Ad5 [E1-, E2b-, E3-]-null) immunized mice (FIG. 4 & FIG. 5). Additional studies to confirm and extend these results are ongoing.
Enhanced RBD Cell Surface Expression:
[0079] Further evidence of the potential enhancing immunogenicity value of N when combined with S was the surprising finding of enhanced surface expression of the RBD protein in 293 cells transfected with the N-ETSD+S construct as seen in FIG. 6. Expression and presentation of RBD appears to be highly important as evidenced by the recent report by Robbiani et al who showed that rare but recurring RBD-specific antibodies with potent antiviral activity were found in all individuals tested who had recovered from COVID-19 infections (Robbiani 2020).
[0080] This finding of enhanced expression of RBD when N is combined with S-Fusion was coraborated in studies using plasma from a patient recovered from COVID-19 infection (FIG. 7). The alternative construct of RBD-ETSD could serve as alternative vaccines following analysis of the two (2) constructs above (FIG. 1) which is intended to initiate in human Phase 1b studies.
[0081] In summary, on the basis of enhanced expression and exposure of the RBD protein with S Fusion and S Fusion+N construct, both were tested in the hAd5 vector. Furthermore, on the basis of recent clinical data from patients recovered from COVID-19, as well as the corroborating preclinical data that the N construct induces long lasting CD4.sup.+ and Th1 cell-mediated immunity, this combination of S Fusion+N construct could provide long-lasting immunity beyond short term neutralizing antibodies.
Immunogenicity Testing of Candidate COVID-19 Vaccine Constructs
[0082] Two (2) Adenovirus-based COVID-19 vaccine constructs will be tested in preclinical experiments, including in vitro expression; small animal immunogenicity, and non-human primate immunogenicity and efficacy.
[0083] Constructs description: ImmunityBio has generated two (2) second generation hAd5-based COVID-19 vaccine constructs for preclinical testing and clinical evaluation. First is a hAd5 vector with SARS-CoV-2 with spike protein insert (see FIG. 1). Second is E1-, E2b-, E3-hAd5 vector with SARS-CoV-2 wild type spike protein (S) insert and Nucleocapsid protein (N) insert containing an Endosomal-targeting domain sequence (ETSD) in the same vector backbone.
[0084] Immunogenicity Studies: Homologous prime-boost immunogenicity in mice was examined by treating Mice with 1, 2 or 3 doses of the ImmunityBio adenovirus vaccine candidates listed in FIG. 1 and serum and splenocyte samples will be tested for SARS-CoV-2 antigen-specific immune responses. Serum is being tested for anti-spike and anti-nucleocapsid antibody responses by ELISA. Splenocytes will be tested for spike- and nucleocapsid-specific cell mediated immune responses by ELISPOT and intracellular cytokine simulation assays. Data from these studies are disclosed throughout this disclosure.
[0085] SARS-CoV-2 Virus Neutralization Studies: Serum from the mice immunized during the course of the immunogenicity studies described above is used will be sent to a third-party subcontractor for SARS-CoV-2 neutralization studies to be performed in their ABSL-3 facility. Serum will be tested for COVID 19 virus neutralizing activity by mixing various dilutions of serum with COVID 19 virus, incubating the mixture, and then exposing the mixture to Vero cells to detect cytopathic effect (CPE). The last dilution that prevents CPE will be considered the endpoint neutralizing titer.
[0086] Immunogenicity and Efficacy Evaluation in Non-Human Primates (third-party subcontractor): Rhesus macaques will be treated with three doses of the ImmunityBio adenovirus vaccine candidates listed in FIG. 1. SARS-CoV-2 antigen-specific immune responses will be monitored in serum and PBMCs by ELISA, ELISPOT and ICS throughout the course of the therapy. Four weeks after the final vaccination, animals will be challenged with SARS-CoV-2 and monitored for disease hallmarks and virus shedding.
[0087] Phase Ib Clinical trial: ImmunityBio has submitted an IND for Phase Ib clinical trial testing of hAd5 [E1-, E2b-, E3-] CoV-2 vaccine.
[0088] Study Design: This is a Phase 1b open-label study in adult healthy subjects. This clinical trial is designed to assess the safety, reactogenicity, and immunogenicity of the hAd5-COVID-19-S and hAd5-COVID-19-S/N vaccines. The hAd5-COVID-19-S and hAd5-COVID-19-S/N vaccines are hAd5 [E1-, E2b-, E3-] vector-based targeting vaccines encoding the SARS-CoV-2 Spike (S) protein alone or together with the SARS-CoV-2 nucleocapsid (N) protein. The hAd5 [E1-, E2b-, E3-] vector is the platform technology for targeted vaccines that has demonstrated safety in over 125 patients with cancer to date at doses as high as 5.times.1011 virus particles per dose. Co-administration of three different hAd5 [E1-, E2b-, E3-] vector-based vaccines on the same day at 5.times.1011 virus particles per dose each (1.5.times.1012 total virus particles) has also been demonstrated to be safe.
[0089] COVID-19 infection causes significant morbidity and mortality in a worldwide population. The hAd5-COVID-19-S and hAd5-COVID-19-S/N vaccines are designed to induce both a humoral and cellular response even in individuals with pre-existing adenoviral immunity. Thus, the potential exists for the hAd5-COVID-19-S and hAd5-COVID-19-S/N to induce anti-COVID-19 immunity and prevent or lessen the health impact of COVID-19 infection in healthy subjects.
[0090] Phase 1b Safety Analysis: In the initial safety analysis of phase 1b, a total of 40 healthy subjects will be divided into 4 dosing cohorts (cohorts 1A, 1B, 2A, 2B; n=10 for each cohort):
[0091] Cohort 1A--hAd5-COVID-19-S at 5.times.1010 viral particles (VP) per dose (n=10),
[0092] Cohort 1B--hAd5-COVID-19-S at 1.times.1011 VP per dose (n=10),
[0093] Cohort 2A--hAd5-COVID-19-S/N at 5.times.1010 VP per dose (n=10),
[0094] Cohort 2B--hAd5-COVID-19-S/N at 1.times.1011 VP per dose (n=10).
[0095] Each subject will receive a subcutaneous (SC) injection of hAd5-COVID-19-S or hAd5-COVID-19-S/N on Day 1 and Day 22 (ie, 2 doses). This dosing schedule is consistent with hAd5 [E1-, E2b-, E3-] vector-based vaccines currently in clinical trials. Cohorts 1-2 will enroll in parallel and may be opened at the same time or in a staggered manner depending upon investigational product supply. Subjects in cohorts 1A and 2A will complete the low-dose vaccination regimen first. After all subjects in cohorts 1A and 2A have completed at least a single dose and follow-up assessments during the toxicity assessment period through study day 8, enrollment will proceed if ImmunityBio Safety Review Committee (SRC) and at least one qualified infectious disease physician, independent of the Sponsor and trial, confirms absence of safety concerns. Subjects will then be enrolled in higher-dose cohorts 1B and 2B, and vaccinated. For all subjects, follow-up study visits will occur at days 8, 22, 29, 52, and at months 3, 6, and 12 following the final vaccination. Additional follow up for safety information will occur via telephone contact as noted in the Schedule of Events. The primary objectives of the initial safety phase 1b are to evaluate preliminary safety and reactogenicity of the hAd5-COVID-19-S and hAd5-COVID-19-S/N vaccines. The secondary objectives are to evaluate the extended safety and immunogenicity of the hAd5-COVID-19-S and hAd5-COVID-19-S/N vaccines.
Expanded Phase 1b: Safety and Immunogenicity for Construct Selection
[0096] Phase 1b expansion will proceed if the SRC determines it is safe to do so based on a review of safety data from the phase 1b safety assessment. In phase 1b expansion, a total of 60 healthy subjects will be divided into 4 dosing cohorts (cohorts 1A, 1B, 2A, 2B; n=15 for each cohort):
[0097] Cohort 1A--hAd5-COVID-19-S at 5.times.1010 VP per dose (n=15)
[0098] Cohort 1B--hAd5-COVID-19-S at 1.times.1011 VP per dose (n=15)
[0099] Cohort 2A--hAd5-COVID-19-S/N at 5.times.1010 VP per dose (n=15)
[0100] Cohort 2B--hAd5-COVID-19-S/N at 1.times.1011 VP per dose (n=15)
[0101] Each subject will receive a SC injection of hAd5-COVID-19-S or hAd5-COVID-19-S/N on Day 1 and Day 22 (ie, 2 doses). For all subjects, follow-up study visits will occur at days 8, 22, 29, 52, and at months 3, 6, and 12 following the final vaccination. Additional follow up for safety information will occur via telephone contact as noted in the Schedule of Events. The primary objective of the expanded phase 1b is to select the most immunogenic construct between hAd5-COVID-19-S and hAd5-COVID-19-S/N and dose level as determined by changes in humoral and cellular immunogenicity indexes. The secondary objectives are to assess safety and reactogenicity of hAd5-COVID-19-S and hAd5-COVID-19-S/N.
[0102] As used herein, the term "administering" a pharmaceutical composition or drug refers to both direct and indirect administration of the pharmaceutical composition or drug, wherein direct administration of the pharmaceutical composition or drug is typically performed by a health care professional (e.g., physician, nurse, etc.), and wherein indirect administration includes a step of providing or making available the pharmaceutical composition or drug to the health care professional for direct administration (e.g., via injection, infusion, oral delivery, topical delivery, etc.). Most preferably, the recombinant virus is administered via subcutaneous or subdermal injection. However, in other contemplated aspects, administration may also be intravenous injection. Alternatively, or additionally, antigen presenting cells may be isolated or grown from cells of the patient, infected in vitro, and then transfused to the patient.
[0103] In one aspect of any of the embodiments described above or elsewhere herein, the composition is formulated in a pharmaceutically acceptable excipient suitable for administration to a subject.
[0104] It is still further contemplated that the recombinant viruses and yeasts contemplated herein may further comprises a sequence that encodes at least one of a co-stimulatory molecule, an immune stimulatory cytokine, and a protein that interferes with or down-regulates checkpoint inhibition. For example, suitable co-stimulatory molecules include CD80, CD86, CD30, CD40, CD30L, CD40L, ICOS-L, B7-H3, B7-H4, CD70, OX40L, 4-1BBL, GITR-L, TIM-3, TIM-4, CD48, CD58, TL1A, ICAM-1, and/or LFA3, while suitable immune stimulatory cytokine include IL-2, IL-12, IL-15, IL-15 super agonist (N803), IL-21, IPS1, and/or LMP1, and/or suitable proteins that interfere include antibodies against or antagonists of CTLA-4, PD-1, TIM1 receptor, 2B4, and/or CD160.
[0105] It should be appreciated that all of the above noted co-stimulatory genes are well known in the art, and sequence information of these genes, isoforms, and variants can be retrieved from various public resources, including sequence data bases accessible at the NCBI, EMBL, GenBank, RefSeq, etc. Moreover, while the above exemplary stimulating molecules are preferably expressed in full length form as expressed in human, modified and non-human forms are also deemed suitable so long as such forms assist in stimulating or activating T-cells. Therefore, muteins, truncated forms and chimeric forms are expressly contemplated herein.
[0106] The immunotherapeutic compositions disclosed herein may be either "prophylactic" or "therapeutic". When provided prophylactically, the compositions of the present disclosure are provided in advance of the development of, or the detection of the development of, a coronavirus disease, with the goal of preventing, inhibiting or delaying the development of the coronavirus disease; and/or generally preventing or inhibiting progression of the coronavirus disease in an individual. Therefore, prophylactic compositions can be administered to individuals that appear to be coronavirus disease free (healthy, or normal, individuals), or to individuals who has not yet been detected of coronavirus. Individuals who are at high risk for developing a coronavirus disease, may be treated prophylactically with a composition of the instant disclosure.
[0107] When provided therapeutically, the immunotherapy compositions are provided to an individual who is diagnosed with a coronavirus disease, with the goal of ameliorating or curing the coronavirus disease; increasing survival of the individual; preventing, inhibiting, reversing or delaying development of coronavirus disease in the individual.
[0108] The recitation of ranges of values herein is merely intended to serve as a shorthand method of referring individually to each separate value falling within the range. Unless otherwise indicated herein, each individual value is incorporated into the specification as if it were individually recited herein. All methods described herein can be performed in any suitable order unless otherwise indicated herein or otherwise clearly contradicted by context. The use of any and all examples, or exemplary language (e.g., "such as") provided with respect to certain embodiments herein is intended merely to better illuminate the disclosures herein, and does not pose a limitation on the scope of the invention otherwise claimed. No language in the specification should be construed as indicating any non-claimed element essential to the practice of the claimed invention.
[0109] Many more modifications besides those already described are possible without departing from the concepts disclosed herein. The inventive subject matter, therefore, is not to be restricted except in the scope of the appended claims. Moreover, in interpreting both the specification and the claims, all terms should be interpreted in the broadest possible manner consistent with the context. In particular, the terms "comprises" and "comprising" should be interpreted as referring to elements, components, or steps in a non-exclusive manner, indicating that the referenced elements, components, or steps may be present, or utilized, or combined with other elements, components, or steps that are not expressly referenced. Where the specification claims refer to at least one of something selected from the group consisting of A, B, C . . . and N, the text should be interpreted as requiring only one element from the group, not A plus N, or B plus N, etc.
Sequence CWU
1
1
51473PRTArtificial SequenceNucleocapsid protein 1Met Ser Asp Asn Gly Pro
Gln Asn Gln Arg Asn Ala Pro Arg Ile Thr1 5
10 15Phe Gly Gly Pro Ser Asp Ser Thr Gly Ser Asn Gln
Asn Gly Glu Arg 20 25 30Ser
Gly Ala Arg Ser Lys Gln Arg Arg Pro Gln Gly Leu Pro Asn Asn 35
40 45Thr Ala Ser Trp Phe Thr Ala Leu Thr
Gln His Gly Lys Glu Asp Leu 50 55
60Lys Phe Pro Arg Gly Gln Gly Val Pro Ile Asn Thr Asn Ser Ser Pro65
70 75 80Asp Asp Gln Ile Gly
Tyr Tyr Arg Arg Ala Thr Arg Arg Ile Arg Gly 85
90 95Gly Asp Gly Lys Met Lys Asp Leu Ser Pro Arg
Trp Tyr Phe Tyr Tyr 100 105
110Leu Gly Thr Gly Pro Glu Ala Gly Leu Pro Tyr Gly Ala Asn Lys Asp
115 120 125Gly Ile Ile Trp Val Ala Thr
Glu Gly Ala Leu Asn Thr Pro Lys Asp 130 135
140His Ile Gly Thr Arg Asn Pro Ala Asn Asn Ala Ala Ile Val Leu
Gln145 150 155 160Leu Pro
Gln Gly Thr Thr Leu Pro Lys Gly Phe Tyr Ala Glu Gly Ser
165 170 175Arg Gly Gly Ser Gln Ala Ser
Ser Arg Ser Ser Ser Arg Ser Arg Asn 180 185
190Ser Ser Arg Asn Ser Thr Pro Gly Ser Ser Arg Gly Thr Ser
Pro Ala 195 200 205Arg Met Ala Gly
Asn Gly Gly Asp Ala Ala Leu Ala Leu Leu Leu Leu 210
215 220Asp Arg Leu Asn Gln Leu Glu Ser Lys Met Ser Gly
Lys Gly Gln Gln225 230 235
240Gln Gln Gly Gln Thr Val Thr Lys Lys Ser Ala Ala Glu Ala Ser Lys
245 250 255Lys Pro Arg Gln Lys
Arg Thr Ala Thr Lys Ala Tyr Asn Val Thr Gln 260
265 270Ala Phe Gly Arg Arg Gly Pro Glu Gln Thr Gln Gly
Asn Phe Gly Asp 275 280 285Gln Glu
Leu Ile Arg Gln Gly Thr Asp Tyr Lys His Trp Pro Gln Ile 290
295 300Ala Gln Phe Ala Pro Ser Ala Ser Ala Phe Phe
Gly Met Ser Arg Ile305 310 315
320Gly Met Glu Val Thr Pro Ser Gly Thr Trp Leu Thr Tyr Thr Gly Ala
325 330 335Ile Lys Leu Asp
Asp Lys Asp Pro Asn Phe Lys Asp Gln Val Ile Leu 340
345 350Leu Asn Lys His Ile Asp Ala Tyr Lys Thr Phe
Pro Pro Thr Glu Pro 355 360 365Lys
Lys Asp Lys Lys Lys Lys Ala Asp Glu Thr Gln Ala Leu Pro Gln 370
375 380Arg Gln Lys Lys Gln Gln Thr Val Thr Leu
Leu Pro Ala Ala Asp Leu385 390 395
400Asp Asp Phe Ser Lys Gln Leu Gln Gln Ser Met Ser Ser Ala Asp
Ser 405 410 415Thr Gln Ala
Gly Pro Gly Pro Gly Asn Leu Val Pro Met Val Ala Thr 420
425 430Val Gly Pro Gly Pro Gly Met Leu Ile Pro
Ile Ala Val Gly Gly Ala 435 440
445Leu Ala Gly Leu Val Leu Ile Val Leu Ile Ala Tyr Leu Ile Gly Lys 450
455 460Lys His Cys Ser Tyr Gln Asp Ile
Leu465 470227PRTArtificial SequenceN-ETSD 2Met Leu Leu
Leu Pro Phe Gln Leu Leu Ala Val Leu Phe Pro Gly Gly1 5
10 15Asn Ser Glu Asp Tyr Lys Asp Asp Asp
Asp Lys 20 2531552DNAArtificial SequenceDNA
encoding ETSD and nucleocapsid proteins 3aatgctgctg ctgcccttcc agttgctggc
tgtcctcttt cccggcggca actccgagga 60ttacaaggac gacgacgaca agggtggagg
ctctggaggt ggctctggtg gaggttccgg 120tggcggatct atgagcgaca acggtcccca
gaatcaaaga aatgcgccca gaattacatt 180cggcggccct tctgatagca ctggctcaaa
tcaaaacggg gagagaagcg gagccaggtc 240caaacagcgg agaccccaag gcctgcctaa
taacaccgct tcctggttca cagctctgac 300gcaacacggc aaggaggatc tgaagtttcc
acggggtcag ggcgtcccga ttaacacgaa 360ctctagccca gatgaccaaa tagggtacta
cagaagagcg acaaggcgga tcagaggagg 420cgatggaaaa atgaaggatc tgtcccctag
gtggtatttc tattacctgg gcacaggccc 480tgaagctggg ttgccttacg gcgcaaacaa
agatggaatt atatgggtgg ccaccgaggg 540ggcgttgaac accccaaagg atcacatcgg
aacgaggaat cccgccaaca atgctgctat 600agtgctccaa ctgccacagg gaacaaccct
gcctaagggc ttctacgccg aggggagccg 660cggtggcagc caggccagct ccagaagttc
ctcccgcagc cggaacagct ctagaaacag 720cactcccggc agctccagag ggacaagccc
agccagaatg gccggcaatg gcggcgacgc 780tgccctcgca cttctgttgc ttgatcggct
caatcaactc gaaagcaaaa tgtccggcaa 840gggacaacaa cagcaaggac agaccgttac
aaaaaaaagc gccgccgagg ctagcaagaa 900gcccagacag aagcgaaccg caacaaaggc
ctataatgta acacaagcct ttggaaggcg 960gggacccgaa cagacccagg gaaattttgg
cgaccaggaa ctgatccggc aagggacaga 1020ctataaacat tggccacaga tagcgcaatt
tgctccctcc gcctccgcct tctttggcat 1080gtcaagaata ggcatggaag taactccttc
tggaacctgg ctgacgtaca ctggggcaat 1140caagttggat gataaggacc ctaatttcaa
ggaccaagtt attttgctca acaagcatat 1200agacgcctac aagactttcc cgcctaccga
acctaaaaag gataagaaga agaaagcaga 1260cgagacccag gccctgcctc aacggcaaaa
gaagcagcaa actgtgacac tcctgcccgc 1320cgctgacttg gatgattttt caaaacagct
ccaacagagt atgagcagcg ccgatagcac 1380ccaagctgga ccgggtccgg gcaacctggt
gccgatggtg gcgaccgtgg gtccaggacc 1440gggtatgctg atccccatcg ccgtgggcgg
ggccctggcc ggcctcgtgc tgatcgtcct 1500tatcgcctac ctcatcggca agaagcactg
ctcatatcag gacatcctgt ga 155241282PRTArtificial Sequencespike
protein 4Met Phe Val Phe Leu Val Leu Leu Pro Leu Val Ser Ser Tyr Pro Tyr1
5 10 15Asp Val Pro Asp
Tyr Ala Gln Cys Val Asn Leu Thr Thr Arg Thr Gln 20
25 30Leu Pro Pro Ala Tyr Thr Asn Ser Phe Thr Arg
Gly Val Tyr Tyr Pro 35 40 45Asp
Lys Val Phe Arg Ser Ser Val Leu His Ser Thr Gln Asp Leu Phe 50
55 60Leu Pro Phe Phe Ser Asn Val Thr Trp Phe
His Ala Ile His Val Ser65 70 75
80Gly Thr Asn Gly Thr Lys Arg Phe Asp Asn Pro Val Leu Pro Phe
Asn 85 90 95Asp Gly Val
Tyr Phe Ala Ser Thr Glu Lys Ser Asn Ile Ile Arg Gly 100
105 110Trp Ile Phe Gly Thr Thr Leu Asp Ser Lys
Thr Gln Ser Leu Leu Ile 115 120
125Val Asn Asn Ala Thr Asn Val Val Ile Lys Val Cys Glu Phe Gln Phe 130
135 140Cys Asn Asp Pro Phe Leu Gly Val
Tyr Tyr His Lys Asn Asn Lys Ser145 150
155 160Trp Met Glu Ser Glu Phe Arg Val Tyr Ser Ser Ala
Asn Asn Cys Thr 165 170
175Phe Glu Tyr Val Ser Gln Pro Phe Leu Met Asp Leu Glu Gly Lys Gln
180 185 190Gly Asn Phe Lys Asn Leu
Arg Glu Phe Val Phe Lys Asn Ile Asp Gly 195 200
205Tyr Phe Lys Ile Tyr Ser Lys His Thr Pro Ile Asn Leu Val
Arg Asp 210 215 220Leu Pro Gln Gly Phe
Ser Ala Leu Glu Pro Leu Val Asp Leu Pro Ile225 230
235 240Gly Ile Asn Ile Thr Arg Phe Gln Thr Leu
Leu Ala Leu His Arg Ser 245 250
255Tyr Leu Thr Pro Gly Asp Ser Ser Ser Gly Trp Thr Ala Gly Ala Ala
260 265 270Ala Tyr Tyr Val Gly
Tyr Leu Gln Pro Arg Thr Phe Leu Leu Lys Tyr 275
280 285Asn Glu Asn Gly Thr Ile Thr Asp Ala Val Asp Cys
Ala Leu Asp Pro 290 295 300Leu Ser Glu
Thr Lys Cys Thr Leu Lys Ser Phe Thr Val Glu Lys Gly305
310 315 320Ile Tyr Gln Thr Ser Asn Phe
Arg Val Gln Pro Thr Glu Ser Ile Val 325
330 335Arg Phe Pro Asn Ile Thr Asn Leu Cys Pro Phe Gly
Glu Val Phe Asn 340 345 350Ala
Thr Arg Phe Ala Ser Val Tyr Ala Trp Asn Arg Lys Arg Ile Ser 355
360 365Asn Cys Val Ala Asp Tyr Ser Val Leu
Tyr Asn Ser Ala Ser Phe Ser 370 375
380Thr Phe Lys Cys Tyr Gly Val Ser Pro Thr Lys Leu Asn Asp Leu Cys385
390 395 400Phe Thr Asn Val
Tyr Ala Asp Ser Phe Val Ile Arg Gly Asp Glu Val 405
410 415Arg Gln Ile Ala Pro Gly Gln Thr Gly Lys
Ile Ala Asp Tyr Asn Tyr 420 425
430Lys Leu Pro Asp Asp Phe Thr Gly Cys Val Ile Ala Trp Asn Ser Asn
435 440 445Asn Leu Asp Ser Lys Val Gly
Gly Asn Tyr Asn Tyr Leu Tyr Arg Leu 450 455
460Phe Arg Lys Ser Asn Leu Lys Pro Phe Glu Arg Asp Ile Ser Thr
Glu465 470 475 480Ile Tyr
Gln Ala Gly Ser Thr Pro Cys Asn Gly Val Glu Gly Phe Asn
485 490 495Cys Tyr Phe Pro Leu Gln Ser
Tyr Gly Phe Gln Pro Thr Asn Gly Val 500 505
510Gly Tyr Gln Pro Tyr Arg Val Val Val Leu Ser Phe Glu Leu
Leu His 515 520 525Ala Pro Ala Thr
Val Cys Gly Pro Lys Lys Ser Thr Asn Leu Val Lys 530
535 540Asn Lys Cys Val Asn Phe Asn Phe Asn Gly Leu Thr
Gly Thr Gly Val545 550 555
560Leu Thr Glu Ser Asn Lys Lys Phe Leu Pro Phe Gln Gln Phe Gly Arg
565 570 575Asp Ile Ala Asp Thr
Thr Asp Ala Val Arg Asp Pro Gln Thr Leu Glu 580
585 590Ile Leu Asp Ile Thr Pro Cys Ser Phe Gly Gly Val
Ser Val Ile Thr 595 600 605Pro Gly
Thr Asn Thr Ser Asn Gln Val Ala Val Leu Tyr Gln Asp Val 610
615 620Asn Cys Thr Glu Val Pro Val Ala Ile His Ala
Asp Gln Leu Thr Pro625 630 635
640Thr Trp Arg Val Tyr Ser Thr Gly Ser Asn Val Phe Gln Thr Arg Ala
645 650 655Gly Cys Leu Ile
Gly Ala Glu His Val Asn Asn Ser Tyr Glu Cys Asp 660
665 670Ile Pro Ile Gly Ala Gly Ile Cys Ala Ser Tyr
Gln Thr Gln Thr Asn 675 680 685Ser
Pro Arg Arg Ala Arg Ser Val Ala Ser Gln Ser Ile Ile Ala Tyr 690
695 700Thr Met Ser Leu Gly Ala Glu Asn Ser Val
Ala Tyr Ser Asn Asn Ser705 710 715
720Ile Ala Ile Pro Thr Asn Phe Thr Ile Ser Val Thr Thr Glu Ile
Leu 725 730 735Pro Val Ser
Met Thr Lys Thr Ser Val Asp Cys Thr Met Tyr Ile Cys 740
745 750Gly Asp Ser Thr Glu Cys Ser Asn Leu Leu
Leu Gln Tyr Gly Ser Phe 755 760
765Cys Thr Gln Leu Asn Arg Ala Leu Thr Gly Ile Ala Val Glu Gln Asp 770
775 780Lys Asn Thr Gln Glu Val Phe Ala
Gln Val Lys Gln Ile Tyr Lys Thr785 790
795 800Pro Pro Ile Lys Asp Phe Gly Gly Phe Asn Phe Ser
Gln Ile Leu Pro 805 810
815Asp Pro Ser Lys Pro Ser Lys Arg Ser Phe Ile Glu Asp Leu Leu Phe
820 825 830Asn Lys Val Thr Leu Ala
Asp Ala Gly Phe Ile Lys Gln Tyr Gly Asp 835 840
845Cys Leu Gly Asp Ile Ala Ala Arg Asp Leu Ile Cys Ala Gln
Lys Phe 850 855 860Asn Gly Leu Thr Val
Leu Pro Pro Leu Leu Thr Asp Glu Met Ile Ala865 870
875 880Gln Tyr Thr Ser Ala Leu Leu Ala Gly Thr
Ile Thr Ser Gly Trp Thr 885 890
895Phe Gly Ala Gly Ala Ala Leu Gln Ile Pro Phe Ala Met Gln Met Ala
900 905 910Tyr Arg Phe Asn Gly
Ile Gly Val Thr Gln Asn Val Leu Tyr Glu Asn 915
920 925Gln Lys Leu Ile Ala Asn Gln Phe Asn Ser Ala Ile
Gly Lys Ile Gln 930 935 940Asp Ser Leu
Ser Ser Thr Ala Ser Ala Leu Gly Lys Leu Gln Asp Val945
950 955 960Val Asn Gln Asn Ala Gln Ala
Leu Asn Thr Leu Val Lys Gln Leu Ser 965
970 975Ser Asn Phe Gly Ala Ile Ser Ser Val Leu Asn Asp
Ile Leu Ser Arg 980 985 990Leu
Asp Lys Val Glu Ala Glu Val Gln Ile Asp Arg Leu Ile Thr Gly 995
1000 1005Arg Leu Gln Ser Leu Gln Thr Tyr
Val Thr Gln Gln Leu Ile Arg 1010 1015
1020Ala Ala Glu Ile Arg Ala Ser Ala Asn Leu Ala Ala Thr Lys Met
1025 1030 1035Ser Glu Cys Val Leu Gly
Gln Ser Lys Arg Val Asp Phe Cys Gly 1040 1045
1050Lys Gly Tyr His Leu Met Ser Phe Pro Gln Ser Ala Pro His
Gly 1055 1060 1065Val Val Phe Leu His
Val Thr Tyr Val Pro Ala Gln Glu Lys Asn 1070 1075
1080Phe Thr Thr Ala Pro Ala Ile Cys His Asp Gly Lys Ala
His Phe 1085 1090 1095Pro Arg Glu Gly
Val Phe Val Ser Asn Gly Thr His Trp Phe Val 1100
1105 1110Thr Gln Arg Asn Phe Tyr Glu Pro Gln Ile Ile
Thr Thr Asp Asn 1115 1120 1125Thr Phe
Val Ser Gly Asn Cys Asp Val Val Ile Gly Ile Val Asn 1130
1135 1140Asn Thr Val Tyr Asp Pro Leu Gln Pro Glu
Leu Asp Ser Phe Lys 1145 1150 1155Glu
Glu Leu Asp Lys Tyr Phe Lys Asn His Thr Ser Pro Asp Val 1160
1165 1170Asp Leu Gly Asp Ile Ser Gly Ile Asn
Ala Ser Val Val Asn Ile 1175 1180
1185Gln Lys Glu Ile Asp Arg Leu Asn Glu Val Ala Lys Asn Leu Asn
1190 1195 1200Glu Ser Leu Ile Asp Leu
Gln Glu Leu Gly Lys Tyr Glu Gln Tyr 1205 1210
1215Ile Lys Trp Pro Trp Tyr Ile Trp Leu Gly Phe Ile Ala Gly
Leu 1220 1225 1230Ile Ala Ile Val Met
Val Thr Ile Met Leu Cys Cys Met Thr Ser 1235 1240
1245Cys Cys Ser Cys Leu Lys Gly Cys Cys Ser Cys Gly Ser
Cys Cys 1250 1255 1260Lys Phe Asp Glu
Asp Asp Ser Glu Pro Val Leu Lys Gly Val Lys 1265
1270 1275Leu His Tyr Thr 128053850DNAArtificial
SequenceHA-spike 5aatgttcgtt tttctcgttc tcctcccgct tgtgagcagc tatccgtatg
atgtgccgga 60ttatgcgcaa tgtgtcaacc tcaccacaag gacacagctc cctcccgcat
atacgaatag 120ctttaccaga ggcgtatact atcctgataa ggtctttagg agctcagtac
tgcatagcac 180tcaggatctc ttcctgccgt tcttcagtaa tgttacttgg tttcacgcca
ttcatgtttc 240cgggaccaat ggcaccaaac ggttcgataa tccagtgctt cccttcaacg
atggggtgta 300ctttgccagc actgaaaaat ctaatataat tcggggatgg attttcggaa
ccacactcga 360ttccaagact cagtccctct tgatcgttaa caacgctact aatgttgtca
ttaaggtgtg 420tgagtttcag ttctgcaacg accctttcct gggtgtctac taccataaaa
ataacaagag 480ctggatggag tccgaatttc gcgtctactc aagcgccaat aattgcactt
ttgagtatgt 540gtcccagccc tttttgatgg atctggaggg aaagcagggc aatttcaaaa
atctgagaga 600attcgttttt aagaatatag atggatactt caaaatctac agcaaacaca
cacccataaa 660tcttgtgcgc gatcttcccc agggcttcag cgcgttggaa ccccttgttg
acttgcccat 720aggcatcaac attaccaggt tccaaacgct gctcgccctc caccgcagct
acttgacacc 780cggggattcc agctccggat ggaccgccgg cgccgcagcg tattatgtgg
ggtacctgca 840acccaggaca tttttgctca agtacaatga gaatgggacc atcacagatg
cggtagactg 900tgcactggat ccactcagcg aaactaaatg taccctgaaa agctttaccg
tggagaaagg 960aatctaccaa accagcaact tcagggtcca gcccactgaa tccatcgtta
gatttccaaa 1020tataactaat ttgtgtccat ttggagaggt gttcaatgct acaaggttcg
cgtctgtata 1080cgcttggaac cggaagcgca tctcaaattg cgtggctgat tatagcgttc
tttacaacag 1140cgcttccttt tccacgttca agtgctatgg tgtatccccg acaaagctga
atgacttgtg 1200cttcaccaat gtgtatgcgg attctttcgt tattcgaggc gatgaagtca
gacaaattgc 1260gcctggccag accggaaaga ttgccgacta caactataaa ctgccggacg
actttactgg 1320ttgcgtgatc gcttggaaca gcaataatct tgatagtaaa gttggaggaa
actacaatta 1380cctctataga ctgttcagaa agagcaactt gaagccattc gaacgggata
tctctacgga 1440gatctatcaa gctggcagca ccccctgcaa tggtgtggaa ggctttaatt
gttattttcc 1500tttgcagagc tatggcttcc aacctaccaa cggagtgggc taccagccct
acagagtggt 1560ggtgctcagc tttgaactgc tgcatgcccc ggccacagtt tgcgggccca
aaaaaagcac 1620gaatctggtt aagaacaaat gcgtcaactt caattttaat gggttgacag
gtacaggcgt 1680actgaccgaa tccaacaaaa agttcctgcc ttttcagcag ttcgggagag
atatcgccga 1740cactacagac gccgtcaggg atccccaaac actcgaaatt ctggacatca
caccttgttc 1800cttcggcggg gtatctgtga ttactccggg cacaaatacc agtaaccagg
tagcggtgct 1860ttaccaggat gtcaactgta cggaagtacc tgtcgctatt catgcggatc
aactcactcc 1920tacctggaga gtttattcca ctgggtccaa cgtgtttcag acccgagccg
gctgcttgat 1980tggcgcggaa catgttaaca actcctacga atgtgacatc cctatcggag
ctggcatctg 2040tgcttcctat caaacgcaaa cgaacagccc acggcgggcc agatccgtag
cctctcaaag 2100catcatcgct tatactatgt ccttgggggc tgaaaacagc gttgcctatt
ccaacaatag 2160catcgctatc cctaccaact ttaccatttc cgtgaccaca gaaatactgc
cggtgagcat 2220gacaaagact tctgtggact gtaccatgta tatatgcggc gatagcacag
agtgttctaa 2280tttgctgctg cagtacggca gcttttgtac ccaactcaac agagcactta
cagggattgc 2340cgtcgagcag gataaaaaca cccaggaggt tttcgcccag gttaagcaga
tctacaagac 2400cccaccaatc aaggatttcg gcggcttcaa tttttcccag atactgcccg
atccttccaa 2460gccatccaaa aggagcttta tagaggatct gctgttcaac aaggtgactc
tggccgacgc 2520tggctttatc aagcaatatg gcgattgcct gggggatatt gccgctaggg
accttatctg 2580cgctcaaaaa ttcaacggtc ttaccgttct cccgcccctg ctcaccgacg
agatgatagc 2640ccagtacacg agcgcacttt tggccggcac gataaccagc ggctggacat
tcggtgccgg 2700ggccgctctt caaatcccct ttgccatgca gatggcctac agatttaatg
ggataggcgt 2760gacacaaaat gtcttgtatg aaaatcagaa actgattgca aaccagttta
atagcgctat 2820tggcaagatc caagatagcc tttcctccac cgcatccgct ctgggaaagt
tgcaagacgt 2880cgtgaatcaa aacgcccaag ctctgaatac cctcgtgaag cagcttagct
ccaactttgg 2940cgcgatatcc tccgtgctga acgatatcct gtccagattg gacaaggtcg
aggcagaagt 3000ccagatcgat agattgataa ccggcagact ccagtctctg cagacatatg
tgactcagca 3060gttgataaga gcggccgaaa tacgagcgtc tgcaaatctc gcagcaacga
aaatgtcaga 3120gtgtgtattg gggcaaagta aaagagtaga tttctgtgga aagggttacc
atctgatgtc 3180attcccccag tctgcaccac atggagtagt ttttttgcat gtgacttatg
tgcctgccca 3240ggagaaaaat ttcaccactg cacctgcgat ctgtcatgac ggcaaggcac
atttccctag 3300agaaggcgtc ttcgtatcaa atggaacaca ctggtttgta acccaaagga
acttttacga 3360gccccaaatt ataactaccg acaacacctt cgtaagcgga aactgcgacg
tcgttatagg 3420gatagtcaat aatacggtct atgaccctct tcagccggaa ctggactcct
ttaaagaaga 3480actggataag tacttcaaga accatacgtc tccggatgtg gatctcggag
atataagtgg 3540aatcaacgca agcgtagtaa acattcagaa ggagatagac cgactcaatg
aggttgctaa 3600aaacctgaac gaaagcttga tagacttgca ggagctgggt aagtacgaac
agtacattaa 3660gtggccatgg tatatctggt tgggcttcat agcaggactc atagctatcg
tcatggtgac 3720aataatgctt tgttgtatga ccagctgttg ttcttgtctg aaaggctgct
gcagctgtgg 3780cagctgttgt aaatttgacg aagatgattc cgagcctgtg cttaagggcg
taaaactcca 3840ctatacatga
3850
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