Patent application title: PROTEIN ANTIGEN COMBINATION, DETECTION METHOD AND TESTING KIT USING THE SAME
Inventors:
Lu Shen (Shanghai, CN)
Qihui Wu (Shanghai, CN)
Kun Yin (Shanghai, CN)
Yonghong Zou (Shanghai, CN)
IPC8 Class: AG01N3368FI
USPC Class:
1 1
Class name:
Publication date: 2021-12-23
Patent application number: 20210396769
Abstract:
A protein antigen combination for detecting Alzheimer's disease
autoantibodies in human serum sample and an application thereof are
disclosed. The protein antigen combination includes at least two protein
fragments selected from the following proteins: MAPT, ADARB1, P21,
DNAJC8, RAGE, ASXL1, and JMJD2D. Based on the protein antigen
composition, a kit for diagnosis, especially for early diagnosis of
Alzheimer's disease or its related risks, can be prepared. By using the
protein antigen composition provided by the invention, early Alzheimer's
disease can be quickly and accurately diagnosed, which has important
practical significance.Claims:
1. A protein antigen combination, comprising at least two protein
fragments selected from the following proteins: MAPT, ADARB1, P21,
DNAJC8, RAGE, ASXL1, and JMJD2D.
2. The protein antigen combination according to claim 1, wherein at least one of the protein fragments is selected from the following sequences: the MAPT protein fragment shown in SEQ ID No. 1; the ADARB1 protein fragment shown in SEQ ID No. 2; the P21 protein fragment shown in SEQ ID No. 4; the DNAJC8 protein fragment shown in SEQ ID No. 6; the RAGE protein fragment shown in SEQ ID No. 7; the ASXL1 protein fragment shown in SEQ ID No. 8; and the JMJD2D protein fragment shown in SEQ ID No. 9.
3. The protein antigen combination according to claim 2, wherein the protein antigen combination further comprises one of the following proteins: HSP60 and DAG.
4. The protein antigen combination according to claim 3, wherein the HSP60 protein has the sequence shown in SEQ ID No. 3; and the DAG protein has the sequence shown in SEQ ID No. 5.
5. The protein antigen combination according to claim 4, comprising the MAPT protein fragment, the ADARB1 protein fragment and the HSP60 protein.
6. The protein antigen combination according to claim 4, comprising the DNAJC8 protein fragment, the RAGE protein fragment and the ASXL1 protein fragment.
7. The protein antigen combination according to claim 4, comprising the JMJD2D protein fragment, the P21 protein fragment and the DAG protein.
8. The protein antigen combination according to claim 4, comprising: (i) the MAPT protein fragment, the HSP60 protein and the DNAJC8 protein fragment; (ii) the ADARB1 protein fragment, the RAGE protein fragment and the ASXL1 protein fragment; or (iii) the HSP60 protein, the RAGE protein fragment and the P21 protein fragment.
9. A method of detecting Alzheimer's disease, comprising: combining the protein antigen combination according to claim 1 with a biological sample from a subject at risk for Alzheimer's disease; detecting autoantibodies against at least one of the protein fragments; and predicting whether the subject has the risk of Alzheimer's disease, evaluating progress of Alzheimer's disease in the subject, or determining whether the subject has a risk of recurrence of Alzheimer's disease based on a result of detecting the autoantibodies.
10. A kit for detecting Alzheimer's disease, comprising: the protein antigen combination of claim 1, purified and prepared for detecting autoantibodies against at least one of the protein fragments in a biological sample; a labeled anti-human antibody that binds to the autoantibodies; and a chromogenic agent that changes an absorbance of light at a predetermined wavelength in a test sample containing the protein antigen combination, the autoantibodies and the labeled anti-human antibody.
11. The kit according to claim 10, wherein the biological sample is whole blood or serum.
12. An antigen for detecting Alzheimer's disease, comprising a MAPT protein fragment having the sequence shown in SEQ ID No. 1.
Description:
CROSS-REFERENCE TO RELATED APPLICATIONS
[0001] This application is a continuation of International Pat. Appl. No. PCT/CN2020/085224, filed Apr. 17, 2020, pending, which claims the benefit of Chinese Patent Application No. 202010039229.1, filed on Jan. 15, 2020, incorporated herein by reference in its entirety.
SEQUENCE LISTING
[0002] The present application incorporates by reference a Sequence Listing in the ASCII text file identified by the file name "KUN-004-US SEQ LISTING 20210827_ST25.txt", created on Aug. 27, 2021, and having a size of 2,063 bytes.
FIELD OF THE INVENTION
[0003] The present disclosure belongs to the field of biological detection, in particular to a protein antigen combination for detecting Alzheimer's disease autoantibodies in human serum sample and an application thereof.
BACKGROUND
[0004] Alzheimer's disease (AD) is a progressive neurodegenerative disease characterized by memory and cognitive dysfunction. It frequently occurs in the elderly, with a slow and irreversible course. According to the development of cognitive dysfunction, Alzheimer's disease can be divided into early, middle and late stages. In the early stage, the patients have no obvious symptoms, most of them only show forgetfulness and anxiety, so it is difficult to detect or diagnose. In the middle stage, there will be chaotic symptoms, the patients' character and habits will change, and memory will also be confused. In the later stage, the patients completely show dementia, have no ability to take care of themselves, and eventually die of a variety of secondary diseases.
[0005] The current diagnostic methods of Alzheimer's disease include: 1. Early and significant episodic memory dysfunction; 2. Middle temporal gyrus atrophy; 3. Abnormal cerebrospinal fluid biomarkers, including decreased concentration of amyloid beta 1-42 (A.beta.1-42), increased concentration of total Tau protein, increased concentration of phosphorylated Tau protein, or a combination of the three; 4. Specificity of PET functional neuroimaging showed that glucose metabolic rate in bilateral temporal and parietal lobes decreased; 5. AD related autosomal dominant mutation was found in lineal relatives. However, because the early symptoms are not obvious, and it is difficult to distinguish the middle stage from other diseases, there are still significant problems of missed diagnosis and misdiagnosis in the diagnosis of Alzheimer's disease. Therefore, an effective tool for the diagnosis or staging of AD is urgently needed.
[0006] An autoantibody is an antibody produced by the individual's immune system against the individual's autoprotein (i.e., own protein) antigen. Normally, the immune system produces antibodies in response to exogenous proteins or substances in the body, but sometimes it also recognizes one or more endogenous components of the body, resulting in the production of autoantibody. There has been a lot of evidence that there are a variety of autoantibodies in the serum involved in neurological diseases and syndromes. As far as Alzheimer's disease is concerned, many literatures have reported that patients have high titers of autoantibodies against non-brain and brain-related targets, including those binding to neurons.
[0007] The detection of antibodies in serum is a very mature technology, which makes it possible to accurately detect the autoantibodies of Alzheimer's disease, and then use the autoantibodies of Alzheimer's disease in serum as the detection target to achieve the purpose of diagnosis. For example, Chinese patent application Publication No. CN103154736A disclosed a series of proteins, which suggested that these proteins could potentially be used as antigens binding to autoantibodies of Alzheimer's disease, so they could be used as diagnostic indicators of Alzheimer's disease.
[0008] However, the protein antigens disclosed in CN103154736A are extremely numerous, so it is still necessary to select the proteins that can be used in combination as a protein antigen combination to detect the possible autoantibodies of Alzheimer's disease in the serum of subjects with high specificity and sensitivity, so as to provide a practical means for the diagnosis of Alzheimer's disease. Moreover, even for a single protein antigen, the binding of the full-length protein to the corresponding autoantibodies of Alzheimer's disease may be very weak, resulting in poor detection, detection failure, or even misdiagnosis. Therefore, whether used alone or in combination, it is very important to screen out specific protein antigen combination, or specific region or fragment in the protein to effectively bind and detect the corresponding autoantibodies.
SUMMARY OF THE INVENTION
[0009] An object of the invention is to provide a protein antigen combination for detecting Alzheimer's disease autoantibodies in human serum sample and its application.
[0010] In order to realize the above object of the invention, embodiments of the invention include an antigen combination that includes at least two protein fragments selected from the following proteins: MAPT, ADARB1, P21, DNAJC8, RAGE, ASXL1 and JMJD2D.
[0011] In some embodiments, the protein fragment sequence is selected from one or more of the following sequences:
[0012] The MAPT protein fragment shown in SEQ ID No. 1;
[0013] The Adarb1 protein fragment shown in SEQ ID No. 2;
[0014] The P21 protein fragment shown in SEQ ID No. 4;
[0015] The DNAJC8 protein fragment shown in SEQ ID No. 6;
[0016] The RAGE protein fragment shown in SEQ ID No. 7;
[0017] The ASXL1 protein fragment shown in SEQ ID No. 8; and
[0018] The JMJD2D protein fragment shown in SEQ ID No. 9.
[0019] Furthermore, the protein antigen combination may comprise any one of the following proteins: HSP60 and DAG. The protein sequences may be as follows: the HSP60 protein sequence shown in SEQ ID No. 3; and the DAG protein sequence shown in SEQ ID No. 5.
[0020] In some embodiments, the protein antigen combination includes the MAPT protein fragment, the ADARB1 protein fragment and the HSP60 protein.
[0021] In other embodiments, the protein antigen combination includes the DNAJC8 protein fragment, the RAGE protein fragment and the ASXL1 protein fragment.
[0022] In other embodiments, the protein antigen combination includes the JMJD2D protein fragment, the P21 protein fragment and the DAG protein.
[0023] In yet other embodiments, the protein antigen combination includes (i) the MAPT protein fragment, the HSP60 protein and the DNAJC8 protein fragment; (ii) the ADARB1 protein fragment, the RAGE protein fragment and the ASXL1 protein fragment; or (iii) the HSP60 protein, the RAGE protein fragment and the P21 protein fragment.
[0024] Accordingly, the protein antigen combination can be applied in detecting Alzheimer's disease.
[0025] Accordingly, a kit for detecting Alzheimer's disease can be prepared by using the protein antigen combination.
[0026] Accordingly, the sample used in the kit may be whole blood or serum.
[0027] Preferably, an antigen for detecting Alzheimer's disease is a MAPT protein fragment, and its sequence may be as shown in SEQ ID No. 1.
[0028] Another antigen for detecting Alzheimer's disease is an ADARB1 protein fragment, and its sequence may be shown in SEQ ID No. 2.
[0029] Another antigen for detecting Alzheimer's disease is a P21 protein fragment, and its sequence may be shown in SEQ ID No. 4.
[0030] Another antigen for detecting Alzheimer's disease is a DNAJC8 protein fragment, and its sequence may be shown in SEQ ID No. 6.
[0031] Another antigen for detecting Alzheimer's disease is a RAGE protein fragment, and its sequence may be shown in SEQ ID No. 7.
[0032] Another antigen for detecting Alzheimer's disease is an ASXL1 protein fragment, and its sequence may be shown in SEQ ID No. 8.
[0033] Yet another antigen for detecting Alzheimer's disease is a JMJD2D protein fragment, and its sequence may be shown in SEQ ID No. 9.
[0034] The invention has the following beneficial effects: The invention provides a protein antigen composition for detecting the autoantibodies of Alzheimer's disease, wherein the protein antigen or its fragment can be prepared by artificial synthesis. For example, the synthetic protein antigen or the coding DNA of its fragment is used as the template, the primers are designed, and the gene fragment of the protein antigen or its fragment is cloned into an expression plasmid by PCR, enzyme digestion, ligation and other molecular cloning means. At the same time, HIS and c-myc tags can be selectively added to the N-terminal of protein antigen or its fragment.
[0035] The protein antigen combination provided by the invention has the following uses:
[0036] (1) Testing the presence or presence level of autoantibodies against the above protein antigen combination in biological samples from the subject, so as to determine whether the subject has Alzheimer's disease; predicting whether the subject has a risk of Alzheimer's disease; evaluating the progress of Alzheimer's disease; or determining whether the subject has the risk of recurrence of Alzheimer's disease. The biological samples can be serum, plasma, whole blood, saliva, oral mucosa swab, urine, lymph, cerebrospinal fluid, etc. According to the specific situation, the biological samples can be pretreated by extraction, dilution, enrichment and other means. The method of use is various, simple and easy to operate.
[0037] When the protein antigen combination provided by the invention is used for the above test, the presence or presence level of the autoantibody is tested by binding or interacting the protein or fragment in the protein antigen combination with the corresponding autoantibody that may exist.
[0038] (2) The protein antigen combination provided by the invention can also be used for preparing Alzheimer's disease autoantibody detection reagents or Alzheimer's disease diagnosis reagents. It should be understood that the protein antigen combination can also be used to prepare an Alzheimer's disease autoantibody detection kit. The kit can refer to the method and reagent preparation when using the protein antigen combination for Alzheimer's disease autoantibody detection in embodiments of the invention, and can also be adjusted according to the needs.
[0039] In conclusion, the invention provides a protein antigen combination, which can be used for the detection or diagnosis of Alzheimer's disease, especially for early detection or diagnosis; it can also be used for the disease risk prediction of Alzheimer's disease; and it can be further prepared as a related reagent or kit according to the needs.
DETAILED DESCRIPTION
[0040] The present application is further explained in combination with specific embodiments. Unless otherwise specified, the experimental methods used in the following examples are conventional methods; the materials and reagents used can be obtained from commercial channels; the data obtained are the average values obtained after at least three repetitions, and the data obtained from each repetition are valid data.
EXAMPLE 1: CONSTRUCTION, EXPRESSION AND PURIFICATION OF RECOMBINANT VECTOR OF PROTEIN ANTIGEN
[0041] 1. Protein antigen selection. 115 antigen proteins highly related to Alzheimer's disease were selected for construction, expression and purification. For brevity, only 50 representative ones of them are represented in this paper, and their respective database IDs are shown in Table 1.
TABLE-US-00001 TABLE 1 Database ID of proteins to be tested Protein name Database ID Protein name Database ID RABPT5 NM_004703.6 C20orf96 BC051762.1 RAGE NM_001136.5 CCL12 NM_011331.2 MAPT NM_016835.4 ARPP-19 NM_006628.4 MBP NM_001025101.2 BMF BC069328.1 MOG NM_002433.4 CA13 BC052602.1 PTCD2 NM_024754.5 CENTD2 BC056401.1 POMC NM_000939.4 CSAG3A BC007228.1 DNAJC8 NM_014280 CSNK2A2 NM_001896.2 MRPL34 NM_023937.3 DDX54 BC001132.1 CENTA2 NM_018404 FCGR3A BC036723.1 HSP60 NM_002156.5 FGF16 NM_003868.1 ADARB1 NM_001112.4 HSPC111 BC040106.1 LENG1 NM_024316.2 IER3 NM_003897.2 ASXL1 NM_015338.5 IMPACT NM_018439.1 RPL23A NM_000984.6 PIN4 NM_006223.1 EDRK NP_001171558.1 ROBO3 BC008623.1 P21 NM_000389 SERPINE2 BC042628.1 GDF11 NM_005811 SPT16 BC021561._1 CCL2 NM_002982.4 STK25 NM_006374.2 JMJD2D NM_00018039.3 TARBP2 NM_004178.3 GFAP NM_002055.5 TBC1D21 NM_153356.1 DAG NM_004393.5 TIPIN BC000870.1 CTGF NM_001901.2 TTLL7 BC048970.1 SH3GL2 NM_003026.3 VCY BC056508.1 RABEP2 BC058900.1 POLB NM_002690.1
[0042] 2. Construction and expression of antigen recombinant vector. The target protein antigens were screened from the 50 proteins in Table 1. Using a human cDNA library (purchased from Invitrogen company) or whole gene synthetic DNA as template, primers were designed respectively, and the full-length gene of the proteins was cloned into the pET28 plasmid by PCR, enzyme digestion, ligation and other molecular cloning methods. At the same time, HIS and c-myc tags were added to the N-terminal of the proteins to form fusion proteins. The recombinant expression vector was identified by DNA sequencing and confirmed to contain the correct protein gene fragment. It should be noted that the added tag(s) is only convenient for identification and extraction of protein, and does not have a decisive impact on the function of protein as antigen. When using, it is not necessary to add a label or add other labels as needed.
[0043] The recombinant plasmid containing the protein gene fragment was transformed into competent cells of E. coli BL21 (DE3), and the clones were selected and inoculated into LB medium, and then shaking-cultured at 37.degree. C. to grow the bacteria. When the E. coli BL21 (DE3) density reached OD.sub.600 about 0.8, the temperature was reduced to 16.degree. C., and 0.1 mM isopropylthio-.beta.-d-galactoside (IPTG) was added to each LB medium to induce the expression overnight.
[0044] 3. Purification of protein antigen. The expression-induced bacteria were collected by centrifugation and rinsed twice with PBS. The pyrolysate (5-10 mL pyrolysate per g bacteria) was used to suspend and disperse the bacteria. The bacteria cell was broken by ice bath and ultrasonic wave (ultrasonic power 200 W, broken for 5 S, rest for 5 S). After crushing, centrifugation at 13000 rpm, 10.degree. C. was conducted for, and the supernatant was purified by Ni column affinity chromatography and molecular sieve chromatography. SDS-PAGE electrophoresis was used to confirm the molecular weight and purity of the protein. Bradford method was used to determine the concentration, and then the protein was stored at -80.degree. C. for standby. The purified protein was obtained.
EXAMPLE 2: SCREENING CANDIDATE ANTIGENS FROM PROTEINS TO BE TESTED
[0045] 1. The solutions and reagents used in this example are as follows:
[0046] (1) The coating buffer was PBS buffer, pH=7.4. The preparation method is as follows: 3.58 g Na.sub.2HPO.sub.412H.sub.2O, 0.23 g KH.sub.2PO.sub.42H.sub.2O, 0.2 g KCl and 8.0 g NaCl are accurately weighed and dissolved in a relatively small amount of water, then diluted with water to 1 L.
[0047] (2) Blocking solution/sample diluent/antibody diluent: dissolve 10 g BSA (bovine serum albumin) in the coating buffer, and dilute with water to 1 L.
[0048] (3) Detergent: It should be prepared when using. Add 0.5% Tween20 (V/V) to the coating buffer before use, pH=7.4.
[0049] (4) TMB chromogenic agent, purchased from KPL company.
[0050] (5) Termination solution: 1M hydrochloric acid.
[0051] 2. Coating the protein onto a solid phase: Dilute the purified protein to be tested in example 1 to 5 .mu.g/mL with the coating buffer, add it to 96-well plate, 50 .mu.L for each well, and coat it at 4.degree. C. overnight. The next day, pour out the solution, dry it, and wash it three times with detergent, 200 .mu.L per well each time. Then 200 .mu.L blocking solution was added to each well, and incubated at room temperature for 1 h, then the blocking solution was poured out and dried, and then washed with the detergent for three times, 200 .mu.L per well each time, and dried again to obtain the solid coated antigen in 96 well plate.
[0052] 3. Adding the sample to be tested: The human serum to be tested was diluted 100 times with sample diluent and then added to the 96-well plate containing the protein to be tested, and 50 .mu.L of the diluted sample to be tested is added to each well. Then, the 96-well plate was placed on the microplate shaker and incubated at room temperature for 1 h; then, the plate was dried, washed with the detergent three times, 200 .mu.L per well each time, and then dried again.
[0053] 4. Adding the enzyme-labeled second antibody: 1.0 mg/mL horseradish peroxidase-labeled recombinant Goat anti-human immunoglobulin G antibody (purchased from Jackson immune research Inc.) was diluted 20000 times with the antibody diluent, and then added to the 96-well plate treated in step 3, 50 .mu.L for each well. Then, the 96-well plate was placed on the microplate shaker, incubated at room temperature for 0.5 h, then dried, washed three times with the detergent, 200 .mu.L per well each time, and dried again.
[0054] 5. Color reaction and optical density reading: In the 96-well plate treated in step 4, 50 .mu.L TMB chromogenic agent was added to each well, and the shaking time was 15 s. The reaction was kept away from light for 15 min at room temperature, and then 50 .mu.L termination solution was added. Then the absorbance value at 450 nm was read by a microplate reader to obtain the detection signal(S) of each sample.
[0055] 6. Sensitivity and specificity analysis: 180 positive samples (serum of patients diagnosed with Alzheimer's disease) and 180 negative samples (serum of healthy subjects) were taken respectively. The detection signal (S) of each sample was determined according to the above method (absorption value of 450 nm wavelength). Negative samples were taken as negative reference samples. The mean (M, average value) and standard deviation (SD) of the detection signals (S) of all negative reference samples were calculated, and M+3 SD was taken as the cut-off value. The samples with a detection signal (S).gtoreq.cut off value (S.gtoreq.M+3 SD) were regarded as positive; the samples with a detection signal (S)<cut off value (S<M+3 SD) were regarded as negative.
[0056] The specificity and sensitivity were calculated based on the positive and negative results of the samples. Among them, specificity refers to the proportion of healthy subjects whose samples are correctly determined as negative, that is, the number of negative samples which are correctly determined as negative divided by the total number of negative samples. Sensitivity refers to the proportion of samples of patients with Alzheimer's disease that are correctly determined to be positive, that is, the number of positive samples divided by the total number of positive samples. The sensitivity and specificity of using each protein to be tested as antigen for sample detection are calculated, and the results are shown in Table 2.
TABLE-US-00002 TABLE 2 Sensitivity and specificity of proteins to be tested as antigens suscepti- protein bility Specificity protein susceptibility Specificity RABPT5 20.56% 83.33% C20orf96 7.78% 79.44% RAGE 28.33% 84.44% CCL12 11.11% 93.33% MAPT 36.67% 88.89% ARPP-19 18.89% 76.11% MBP 27.78% 89.44% BMF 16.67% 82.22% MOG 20.56% 80.56% CA13 8.89% 81.67% PTCD2 24.44% 84.44% CENTD2 4.44% 99.44% POMC 21.11% 85.56% CSAG3A 11.67% 72.22% DNAJC8 31.11% 86.67% CSNK2A2 17.22% 79.44% MRPL34 26.67% 87.22% DDX54 0.56% 76.11% CENTA2 27.22% 82.78% FCGR3A 0.56% 95% HSP60 35.56% 88.33% FGF16 4.44% 84.44% ADARB1 36.67% 87.78% HSPC111 18.89% 72.22% LENG1 24.44% 87.22% IER3 19.44% 90% ASXL1 27.78% 86.11% IMPACT 16.11% 74.44% RPL23A 22.22% 83.33% PIN4 5.56% 95% EDRK 26.67% 85.56% ROBO3 8.33% 85% P21 36.11% 84.44% SERPINE2 15% 91.11% GDF11 25% 84.44% SPT16 10% 97.22% CCL2 25.56% 86.67% STK25 19.44% 80% JMJD2D 27.78% 86.11% TARBP2 11.11% 73.89% GFAP 23.89% 85% TBC1D21 10% 77.78% DAG 30.56% 85.56% TIPIN 2.78% 85.56% CTGF 12.22% 86.67% TTLL7 19.44% 84.44% SH3GL2 18.33% 78.89% VCY 10% 97.78% RABEP2 23.89% 68.89% POLB 14.44% 80.56%
[0057] 7. The proteins with sensitivity.gtoreq.20% and specificity.gtoreq.75% were selected as candidate antigens. The screening results are shown in Table 3.
TABLE-US-00003 TABLE 3 Display of candidate antigens selected from the proteins to be tested Candidate antigen susceptibility Specificity MAPT 36.67% 88.89% ADARB1 36.67% 87.78% HSP60 35.56% 88.33% P21 36.11% 84.44% DAG 30.56% 85.56% DNAJC8 31.11% 86.67% RAGE 28.33% 84.44% ASXL1 27.78% 86.11% JMJD2D 27.78% 86.11% EDRK 26.67% 85.56% MBP 27.78% 89.44% MRPL34 26.67% 87.22% CENTA2 27.22% 82.78% PTCD2 24.44% 84.44% LENG1 24.44% 87.22% GDF11 25.00% 84.44% CCL2 25.56% 86.67% GFAP 23.89% 85.00% RPL23A 22.22% 83.33% POMC 21.11% 85.56% RABPT5 20.56% 83.33% MOG 20.56% 80.56%
EXAMPLE 3: ACTIVE SITES SCREENING OF CANDIDATE ANTIGENS
[0058] 1. The amino acid sequences and structures of the candidate antigens obtained in example 2 were analyzed. After a large number of preliminary tests, different sequence fragments and epitopes were selected from each candidate antigen. The selected sequence fragments or full length is shown in Table 4.
TABLE-US-00004 TABLE 4 Sequence fragments intercepted from each candidate antigen Starting and Starting and Candidate ending positions Candidate ending positions antigen of amino acids antigen of amino acids MAPT 2-288 DNACJ8 2-253 502-758 114-253 526-691 2-140 ADARB1 1-299 RAGE 1-404 299-741 23-54 678-741 338-404 HSP60 1-355 ASXL1 1-84 302-573 100-209 1-573 641-684 P21 42-164 JMJD2D 1-523 2-164 223-523 55-160 1-160 EDRK 1-35 GDF11 25-298 20-59 42-407 1-62 299-407 MBP 120-304 CCL2 45-120 1-304 1-120 1-135 25-100 MRPL34 1-92 GFAP 120-423 1-46 100-175 47-92 251-436 CENTA2 1-220 RPL23A 1-163 105-320 81-163 1-381 9-163 PTCD2 151-268 POMC 61-301 38-120 1-301 195-320 113-301 LENG1 1-264 RABPT5 1-433 1-120 101-399 121-260 187-433 MOG 1-252 DAG 1-9 30-183 30-252
[0059] 2. According to the method of example 1, the expression vector of each protein fragment in Table 4 was constructed, expressed and purified to obtain the constructed protein fragment, and then the sensitivity and specificity of each constructed protein fragment as antigen were detected according to the method of example 2. As in example 1, although some labels are added to each protein fragment, the purpose of adding labels is to facilitate extraction and recognition, and does not have a material impact on the function of protein fragment as antigen. The purpose of the invention can be realized by using the protein before and after adding the label. In actual use, a person having ordinary skill in the art can select whether to add the label and the type of the label according to the need. Therefore, the full text of the invention only provides the protein sequence before labeling. The test results are shown in Table 5.
TABLE-US-00005 TABLE 5 Comparison table of sensitivity and specificity of optimized candidate antigen fragments Candidate Starting and ending positions antigen of amino acids susceptibility Specificity MAPT 2-288 11.11% 83.33% 502-758 40.56% 90.00% 526-691 19.44% 80.00% ADARB1 1-299 24.44% 72.22% 299-741 42.78% 83.89% 678-741 39.44% 93.33% HSP60 1-355 15.56% 84.44% 302-573 20.00% 88.89% 1-573 38.33% 95.00% P21 42-164 27.78% 88.89% 2-164 37.22% 90.00% 55-160 30.56% 89.44% DAG 1-9 35.56% 90.00% DNACJ8 2-253 32.22% 81.67% 114-253 35.00% 88.89% 2-140 50.00% 55.56% RAGE 1-404 20.56% 81.67% 23-54 33.89% 88.33% 338-404 24.44% 82.78% ASXL1 1-84 33.33% 90.00% 100-209 31.67% 79.44% 641-684 32.78% 82.22% JMJD2D 1-523 20.56% 73.89% 223-523 23.89% 77.78% 1-160 33.89% 89.44% EDRK 1-35 21.11% 77.78% 20-59 23.33% 83.89% 1-64 32.22% 90.00% MBP 120-304 32.22% 87.22% 1-304 27.78% 84.44% 1-135 26.11% 85.56% MRPL34 1-92 19.44% 90.56% 1-46 23.89% 81.67% 47-92 30.56% 87.22% CENTA2 1-220 22.78% 80.00% 105-320 25.56% 75.56% 1-381 30.00% 88.89% PTCD2 151-268 31.11% 77.22% 38-120 28.89% 91.11% 195-320 21.67% 86.67% LENG1 1-264 27.78% 92.22% 1-120 25.00% 85.00% 121-260 26.11% 85.56% GDF11 25-298 25.56% 78.33% 42-407 27.78% 92.78% 299-407 23.89% 86.11% CCL2 45-120 26.67% 87.22% 1-120 10.56% 91.11% 25-100 21.11% 81.67% GFAP 120-423 26.11% 89.44% 100-175 19.44% 84.44% 251-436 26.11% 75.00% RPL23A 1-163 8.89% 92.22% 81-163 17.22% 86.67% 9-163 25.56% 88.33% POMC 61-301 23.89% 87.22% 1-301 15.00% 93.33% 113-301 20.56% 82.78% RABPT5 1-433 18.89% 79.44% 101-399 16.67% 84.44% 187-433 22.22% 89.44% MOG 1-252 8.33% 93.33% 30-183 20.00% 83.33% 30-252 13.89% 80.56%
[0060] 3. According to the results in Table 5, for some proteins, compared with the whole protein, the protein fragments obtained by intercepting specific amino acid sequence regions and corresponding optimization have better detection effect; for some antigens, the detection effect of whole protein is better than that of its fragments. This may be due to the inhibition of some protein fragments in some whole proteins during the binding or recognition of Alzheimer's disease-related sites.
[0061] According to the results in Table 5, nine full-length proteins or their fragments were further screened. The sensitivity of the selected full-length proteins or their fragments was more than 33%, and the specificity was more than 88%. They were used as candidate antigens to distinguish Alzheimer's disease patients and healthy subjects. The screening results are shown in Table 6.
TABLE-US-00006 TABLE 6 Comparison of sensitivity and specificity of each candidate antigen Fragment Candidate or full Serial antigen susceptibility Specificity length number MAPT[502-758] 40.56% 90.00% fragment SEQ ID NO. 1 ADARB1[678-741] 39.44% 93.33% fragment SEQ ID NO. 2 HSP60[1-573] 38.33% 95.00% overall SEQ ID length NO. 3 P21[2-164] 37.22% 90.00% fragment SEQ ID NO. 4 DAG[1-9] 35.56% 90.00% length SEQ ID NO. 5 DNAJC8[114-253] 35.00% 88.89% fragment SEQ ID NO. 6 RAGE[23-54] 33.89% 88.33% fragment SEQ ID NO. 7 ASXL4[1-84] 33.33% 90.00% fragment SEQ ID NO. 8 JMJD2D[1-160] 33.89% 89.44% fragment SEQ ID NO. 9
EXAMPLE 4: DISPLAY OF DETECTION EFFECT OF CANDIDATE ANTIGENS
[0062] 1. According to the screening results in Table 6, different antigen combinations are selected from the candidate protein antigens. Based on the whole proteins corresponding to the candidate protein fragments of candidate groups 1-8, the corresponding whole protein combinations are set as control groups 1-8; according to the combinations 5 and 6 in Table 5 of patent CN109738653A, the control groups 9 and 10 are set respectively. The details are shown in Table 7. It should be noted that the inventor did not only carry out the combination test in Table 7; the inventor obtained the protein antigen combinations shown in Table 7 after a large number of preliminary tests, and only selected some combinations with better effect due to space limitation.
TABLE-US-00007 TABLE 7 Comparison of antigen combinations group combination Candidate MAPT[502-758], ADARB1[678-741], HSP60[1-573] group 1 Candidate DNAJC8[114-253], RAGE[23-54], ASXL1[1-84] group 2 Candidate JMJD2D[1-160], P21[2-164], DAG[1-9] group 3 Candidate MAPT[502-758], DNAJC8[114-253], JMJD2D[1-160] group 4 Candidate MAPT[502-758], HSP60[1-573], DNAJC8[114-253] group 5 Candidate ADARB1[678-741], RAGE[23-54], ASXL1[1-84] group 6 Candidate HSP60[1-573], RAGE[23-54], P21[2-164] group 7 Candidate ADARB1[678-741], HSP60[1-573], ASXL1[1-84] group 8 Candidate MAPT[502-758], RAGE[23-54], JMJD2D[1-160] group 9 Candidate ADARB1[678-741], ASXL1[1-84], DAG[1-9] group 10 Control group MAPT, ADARB1, HSP60 1 Control group DNAJC8, RAGE, ASXL1 2 Control group JMJD2D, P21, DAG 3 Control group MAPT, DNAJC8, JMJD2D 4 Control group MAPT, HSP60, DNAJC8 5 Control group ADARB1, RAGE, ASXL1 6 Control group HSP60, RAGE, P21 7 Control group 8 ADARB1, HSP60, ASXL1 Control group 9 RAGE, DNAJC8, HSP60, MRPL34, ADARB1, CCL2, MAPT, ASXL1, GDF11 Control group RAGE, DNAJC8, HSP60, MRPL34, ADARB1, 10 CCL2, MAPT, MBP, GDF11
[0063] 2. According to Mini-Mental State Examination (MMSE), the patients with Alzheimer's disease and healthy subjects were scored. The subjects with scores of 27-30 were normal, the subjects with scores of 21-26 were mild (early), the subjects with scores of 10-20 were moderate (middle), and the subjects with scores of 0-9 were severe (late).
[0064] According to the MMSE score, 180 patients with Alzheimer's disease in the early stage, 90 patients in the middle stage and 90 patients in the late stage were selected as the test samples; 180 healthy subjects with normal MMSE score were selected as the samples of healthy subjects. According to the detection method of example 2, the sensitivity and specificity of the above samples were detected by using the protein antigen combinations of each group in Table 7 (it should be noted that the proteins used in the control group were whole proteins).The sensitivity and specificity in this embodiment are specifically overall specificity, overall sensitivity, early sensitivity, mid-term sensitivity and late sensitivity.
[0065] Among them, the definition method of positive and negative for early sensitivity, mid-term sensitivity and late sensitivity refers to example 2.
[0066] Early sensitivity refers to the proportion of 180 samples of patients with early Alzheimer's disease correctly determined as positive by the antigen combination, that is, the number of samples of patients with early Alzheimer's disease correctly determined as positive divided by the total number of samples of patients with early Alzheimer's disease; medium sensitivity refers to the proportion of 90 samples of patients with middle Alzheimer's disease correctly determined as positive, that is, in the middle stage, the number of positive samples from patients with Alzheimer's disease divided by the total number of samples from patients with mid-term Alzheimer's disease; late sensitivity refers to the proportion of 90 samples from patients with late Alzheimer's disease correctly determined to be positive, that is, the number of positive samples from patients with late Alzheimer's disease divided by the total number of samples from patients with late Alzheimer's disease. Overall sensitivity refers to the proportion of 180 samples of patients with early Alzheimer's disease, 90 samples of patients with intermediate Alzheimer's disease and 90 samples of patients with advanced Alzheimer's disease that are correctly determined as positive, that is, the number of samples of all patients with Alzheimer's disease divided by the total number of samples of all patients with Alzheimer's disease; overall specificity refers to the proportion of 180 samples of healthy subjects that are correctly determined as negative, that is, in 180 healthy subjects, the number of negative healthy subjects divided by the total number of healthy subjects.
[0067] The results of antigen combination test of each group are shown in Table 8.
TABLE-US-00008 TABLE 8 Comparison of antigen combination test results of each group Early Medium term Late Overall Overall group sensitivity sensitivity sensitivity sensitivity specificity Candidate 94.44% 88.89% 93.33% 92.78% 90.00% group 1 Candidate 93.33% 88.89% 88.89% 91.11% 88.89% group 2 Candidate 94.44% 84.44% 91.11% 91.11% 88.33% group 3 Candidate 90.00% 86.67% 86.67% 88.33% 88.33% group 4 Candidate 92.22% 88.89% 91.11% 91.11% 90.00% group 5 Candidate 94.44% 84.44% 91.11% 91.11% 88.89% group 6 Candidate 93.33% 91.11% 80.00% 89.44% 90.00% group 7 Candidate 93.33% 73.33% 91.11% 87.78% 88.89% group 8 Candidate 74.44% 88.89% 91.11% 82.22% 88.33% group 9 Candidate 66.67% 84.44% 93.33% 77.78% 88.89% group 10 Control 77.78% 66.67% 80.00% 75.56% 83.33% group 1 Control 76.67% 73.33% 77.78% 76.11% 80.56% group 2 Control 80.00% 62.22% 80.00% 75.56% 77.78% group 3 Control 73.33% 64.44% 71.11% 70.56% 79.44% group 4 Control 75.56% 66.67% 75.56% 73.33% 80.00% group 5 Control 77.78% 68.89% 80.00% 76.11% 78.89% group 6 Control 78.89% 68.89% 77.78% 76.11% 77.78% group 7 Control 76.67% 64.44% 80.00% 74.44% 75.56% group 8 Control 83.33% 77.78% 82.22% 81.67% 87.22% group 9 Control 85.56% 84.44% 75.56% 82.78% 87.78% group 10
[0068] It can be seen from Table 8 that candidate groups 1-8 have higher sensitivity and specificity; the overall sensitivity is greater than 85%, and the overall specificity is greater than 88%. At the same time, compared with intermediate and late samples, the antigen combination provided by the invention has higher sensitivity in detecting early samples. Therefore, the invention provides a more accurate detection method for the diagnosis of Alzheimer's disease, especially for the early diagnosis.
[0069] In later application, one or more candidate antigen or antigen combinations provided by the invention can be selected as AD diagnostic kit according to needs.
Sequence CWU
1
1
91257PRTHomo sapiens 1Ser Gly Glu Pro Pro Lys Ser Gly Asp Arg Ser Gly Tyr
Ser Ser Pro1 5 10 15Gly
Ser Pro Gly Thr Pro Gly Ser Arg Ser Arg Thr Pro Ser Leu Pro 20
25 30Thr Pro Pro Thr Arg Glu Pro Lys
Lys Val Ala Val Val Arg Thr Pro 35 40
45Pro Lys Ser Pro Ser Ser Ala Lys Ser Arg Leu Gln Thr Ala Pro Val
50 55 60Pro Met Pro Asp Leu Lys Asn Val
Lys Ser Lys Ile Gly Ser Thr Glu65 70 75
80Asn Leu Lys His Gln Pro Gly Gly Gly Lys Val Gln Ile
Ile Asn Lys 85 90 95Lys
Leu Asp Leu Ser Asn Val Gln Ser Lys Cys Gly Ser Lys Asp Asn
100 105 110Ile Lys His Val Pro Gly Gly
Gly Ser Val Gln Ile Val Tyr Lys Pro 115 120
125Val Asp Leu Ser Lys Val Thr Ser Lys Cys Gly Ser Leu Gly Asn
Ile 130 135 140His His Lys Pro Gly Gly
Gly Gln Val Glu Val Lys Ser Glu Lys Leu145 150
155 160Asp Phe Lys Asp Arg Val Gln Ser Lys Ile Gly
Ser Leu Asp Asn Ile 165 170
175Thr His Val Pro Gly Gly Gly Asn Lys Lys Ile Glu Thr His Lys Leu
180 185 190Thr Phe Arg Glu Asn Ala
Lys Ala Lys Thr Asp His Gly Ala Glu Ile 195 200
205Val Tyr Lys Ser Pro Val Val Ser Gly Asp Thr Ser Pro Arg
His Leu 210 215 220Ser Asn Val Ser Ser
Thr Gly Ser Ile Asp Met Val Asp Ser Pro Gln225 230
235 240Leu Ala Thr Leu Ala Asp Glu Val Ser Ala
Ser Leu Ala Lys Gln Gly 245 250
255Leu264PRTHomo sapiens 2Arg Val His Gly Lys Val Pro Ser His Leu
Leu Arg Ser Lys Ile Thr1 5 10
15Lys Pro Asn Val Tyr His Glu Ser Lys Leu Ala Ala Lys Glu Tyr Gln
20 25 30Ala Ala Lys Ala Arg Leu
Phe Thr Ala Phe Ile Lys Ala Gly Leu Gly 35 40
45Ala Trp Val Glu Lys Pro Thr Glu Gln Asp Gln Phe Ser Leu
Thr Pro 50 55 603573PRTHomo sapiens
3Met Leu Arg Leu Pro Thr Val Phe Arg Gln Met Arg Pro Val Ser Arg1
5 10 15Val Leu Ala Pro His Leu
Thr Arg Ala Tyr Ala Lys Asp Val Lys Phe 20 25
30Gly Ala Asp Ala Arg Ala Leu Met Leu Gln Gly Val Asp
Leu Leu Ala 35 40 45Asp Ala Val
Ala Val Thr Met Gly Pro Lys Gly Arg Thr Val Ile Ile 50
55 60Glu Gln Ser Trp Gly Ser Pro Lys Val Thr Lys Asp
Gly Val Thr Val65 70 75
80Ala Lys Ser Ile Asp Leu Lys Asp Lys Tyr Lys Asn Ile Gly Ala Lys
85 90 95Leu Val Gln Asp Val Ala
Asn Asn Thr Asn Glu Glu Ala Gly Asp Gly 100
105 110Thr Thr Thr Ala Thr Val Leu Ala Arg Ser Ile Ala
Lys Glu Gly Phe 115 120 125Glu Lys
Ile Ser Lys Gly Ala Asn Pro Val Glu Ile Arg Arg Gly Val 130
135 140Met Leu Ala Val Asp Ala Val Ile Ala Glu Leu
Lys Lys Gln Ser Lys145 150 155
160Pro Val Thr Thr Pro Glu Glu Ile Ala Gln Val Ala Thr Ile Ser Ala
165 170 175Asn Gly Asp Lys
Glu Ile Gly Asn Ile Ile Ser Asp Ala Met Lys Lys 180
185 190Val Gly Arg Lys Gly Val Ile Thr Val Lys Asp
Gly Lys Thr Leu Asn 195 200 205Asp
Glu Leu Glu Ile Ile Glu Gly Met Lys Phe Asp Arg Gly Tyr Ile 210
215 220Ser Pro Tyr Phe Ile Asn Thr Ser Lys Gly
Gln Lys Cys Glu Phe Gln225 230 235
240Asp Ala Tyr Val Leu Leu Ser Glu Lys Lys Ile Ser Ser Ile Gln
Ser 245 250 255Ile Val Pro
Ala Leu Glu Ile Ala Asn Ala His Arg Lys Pro Leu Val 260
265 270Ile Ile Ala Glu Asp Val Asp Gly Glu Ala
Leu Ser Thr Leu Val Leu 275 280
285Asn Arg Leu Lys Val Gly Leu Gln Val Val Ala Val Lys Ala Pro Gly 290
295 300Phe Gly Asp Asn Arg Lys Asn Gln
Leu Lys Asp Met Ala Ile Ala Thr305 310
315 320Gly Gly Ala Val Phe Gly Glu Glu Gly Leu Thr Leu
Asn Leu Glu Asp 325 330
335Val Gln Pro His Asp Leu Gly Lys Val Gly Glu Val Ile Val Thr Lys
340 345 350Asp Asp Ala Met Leu Leu
Lys Gly Lys Gly Asp Lys Ala Gln Ile Glu 355 360
365Lys Arg Ile Gln Glu Ile Ile Glu Gln Leu Asp Val Thr Thr
Ser Glu 370 375 380Tyr Glu Lys Glu Lys
Leu Asn Glu Arg Leu Ala Lys Leu Ser Asp Gly385 390
395 400Val Ala Val Leu Lys Val Gly Gly Thr Ser
Asp Val Glu Val Asn Glu 405 410
415Lys Lys Asp Arg Val Thr Asp Ala Leu Asn Ala Thr Arg Ala Ala Val
420 425 430Glu Glu Gly Ile Val
Leu Gly Gly Gly Cys Ala Leu Leu Arg Cys Ile 435
440 445Pro Ala Leu Asp Ser Leu Thr Pro Ala Asn Glu Asp
Gln Lys Ile Gly 450 455 460Ile Glu Ile
Ile Lys Arg Thr Leu Lys Ile Pro Ala Met Thr Ile Ala465
470 475 480Lys Asn Ala Gly Val Glu Gly
Ser Leu Ile Val Glu Lys Ile Met Gln 485
490 495Ser Ser Ser Glu Val Gly Tyr Asp Ala Met Ala Gly
Asp Phe Val Asn 500 505 510Met
Val Glu Lys Gly Ile Ile Asp Pro Thr Lys Val Val Arg Thr Ala 515
520 525Leu Leu Asp Ala Ala Gly Val Ala Ser
Leu Leu Thr Thr Ala Glu Val 530 535
540Val Val Thr Glu Ile Pro Lys Glu Glu Lys Asp Pro Gly Met Gly Ala545
550 555 560Met Gly Gly Met
Gly Gly Gly Met Gly Gly Gly Met Phe 565
5704163PRTHomo sapiens 4Ser Glu Pro Ala Gly Asp Val Arg Gln Asn Pro Cys
Gly Ser Lys Ala1 5 10
15Cys Arg Arg Leu Phe Gly Pro Val Asp Ser Glu Gln Leu Ser Arg Asp
20 25 30Cys Asp Ala Leu Met Ala Gly
Cys Ile Gln Glu Ala Arg Glu Arg Trp 35 40
45Asn Phe Asp Phe Val Thr Glu Thr Pro Leu Glu Gly Asp Phe Ala
Trp 50 55 60Glu Arg Val Arg Gly Leu
Gly Leu Pro Lys Leu Tyr Leu Pro Thr Gly65 70
75 80Pro Arg Arg Gly Arg Asp Glu Leu Gly Gly Gly
Arg Arg Pro Gly Thr 85 90
95Ser Pro Ala Leu Leu Gln Gly Thr Ala Glu Glu Asp His Val Asp Leu
100 105 110Ser Leu Ser Cys Thr Leu
Val Pro Arg Ser Gly Glu Gln Ala Glu Gly 115 120
125Ser Pro Gly Gly Pro Gly Asp Ser Gln Gly Arg Lys Arg Arg
Gln Thr 130 135 140Ser Met Thr Asp Phe
Tyr His Ser Lys Arg Arg Leu Ile Phe Ser Lys145 150
155 160Arg Lys Pro59PRTHomo sapiens 5Cys Asp Ala
Gly Arg Lys Gln Lys Cys1 56140PRTHomo sapiens 6Glu Gln Lys
Lys Arg Ala Leu Asp Val Ile Gln Ala Gly Lys Glu Tyr1 5
10 15Val Glu His Thr Val Lys Glu Arg Lys
Lys Gln Leu Lys Lys Glu Gly 20 25
30Lys Pro Thr Ile Val Glu Glu Asp Asp Pro Glu Leu Phe Lys Gln Ala
35 40 45Val Tyr Lys Gln Thr Met Lys
Leu Phe Ala Glu Leu Glu Ile Lys Arg 50 55
60Lys Glu Arg Glu Ala Lys Glu Met His Glu Arg Lys Arg Gln Arg Glu65
70 75 80Glu Glu Ile Glu
Ala Gln Glu Lys Ala Lys Arg Glu Arg Glu Trp Gln 85
90 95Lys Asn Phe Glu Glu Ser Arg Asp Gly Arg
Val Asp Ser Trp Arg Asn 100 105
110Phe Gln Ala Asn Thr Lys Gly Lys Lys Glu Lys Lys Asn Arg Thr Phe
115 120 125Leu Arg Pro Pro Lys Val Lys
Met Glu Gln Arg Glu 130 135
140732PRTHomo sapiens 7Ala Gln Asn Ile Thr Ala Arg Ile Gly Glu Pro Leu
Val Leu Lys Cys1 5 10
15Lys Gly Ala Pro Lys Lys Pro Pro Gln Arg Leu Glu Trp Lys Leu Asn
20 25 30884PRTHomo sapiens 8Met Lys
Asp Lys Gln Lys Lys Lys Lys Glu Arg Thr Trp Ala Glu Ala1 5
10 15Ala Arg Leu Val Leu Glu Asn Tyr
Ser Asp Ala Pro Met Thr Pro Lys 20 25
30Gln Ile Leu Gln Val Ile Glu Ala Glu Gly Leu Lys Glu Met Ser
Gly 35 40 45Thr Ser Pro Leu Ala
Cys Leu Asn Ala Met Leu His Ser Asn Ser Arg 50 55
60Gly Gly Glu Gly Leu Phe Tyr Lys Leu Pro Gly Arg Ile Ser
Leu Phe65 70 75 80Thr
Leu Lys Arg9160PRTHomo sapiens 9Met Glu Thr Met Lys Ser Lys Ala Asn Cys
Ala Gln Asn Pro Asn Cys1 5 10
15Asn Ile Met Ile Phe His Pro Thr Lys Glu Glu Phe Asn Asp Phe Asp
20 25 30Lys Tyr Ile Ala Tyr Met
Glu Ser Gln Gly Ala His Arg Ala Gly Leu 35 40
45Ala Lys Ile Ile Pro Pro Lys Glu Trp Lys Ala Arg Glu Thr
Tyr Asp 50 55 60Asn Ile Ser Glu Ile
Leu Ile Ala Thr Pro Leu Gln Gln Val Ala Ser65 70
75 80Gly Arg Ala Gly Val Phe Thr Gln Tyr His
Lys Lys Lys Lys Ala Met 85 90
95Thr Val Gly Glu Tyr Arg His Leu Ala Asn Ser Lys Lys Tyr Gln Thr
100 105 110Pro Pro His Gln Asn
Phe Glu Asp Leu Glu Arg Lys Tyr Trp Lys Asn 115
120 125Arg Ile Tyr Asn Ser Pro Ile Tyr Gly Ala Asp Ile
Ser Gly Ser Leu 130 135 140Phe Asp Glu
Asn Thr Lys Gln Trp Asn Leu Gly His Leu Gly Thr Ile145
150 155 160
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