Patent application title: MUTANT OF ADENO-ASSOCIATED VIRUS (AAV) CAPSID PROTEIN
Inventors:
IPC8 Class: AC07K14005FI
USPC Class:
1 1
Class name:
Publication date: 2021-08-12
Patent application number: 20210246173
Abstract:
The present invention provides: a mutant of adeno-associated virus (AAV)
capsid protein, which contains at least one amino acid substitution in
PLA2 domain when compared with the amino acid sequence for wild-type AAV
capsid protein; a nucleic acid encoding the mutant; a cell containing the
nucleic acid; a method for producing a recombinant AAV particle,
comprising a step of culturing the cell to produce the recombinant AAV
particle; a recombinant AAV particle containing the mutant; a composition
containing the recombinant AAV particle; and a method for transferring a
gene into a target cell, comprising a step of bringing the recombinant
AAV particle into contact with the target cell.Claims:
1-11. (canceled)
12. A mutant of an adeno-associated virus (AAV) capsid protein, comprising one or more amino acid replacements in a PLA2 domain as compared with the amino acid sequence of a wild-type AAV capsid protein, wherein the mutant is a mutant of AAV other than AAV2, and wherein the one or more amino acid replacements comprise an amino acid replacement at a position corresponding to position 68 in the amino acid sequence of wild-type AAV2 VP1 capsid protein shown by SEQ ID NO:2.
13. The mutant of an AAV capsid protein according to claim 12, wherein the one or more amino acid replacements comprise an amino acid replacement by valine at a position corresponding to position 68 in the amino acid sequence of wild-type AAV2 VP1 capsid protein shown by SEQ ID NO:2.
14. The mutant of an AAV capsid protein according to claim 12, wherein the one or more amino acid replacements further comprise amino acid replacements at positions corresponding to position 3 and position 6 in the amino acid sequence of wild-type AAV2 VP1 capsid protein shown by SEQ ID NO:2.
15. The mutant of an AAV capsid protein according to claim 12, wherein the one or more amino acid replacements comprise: (a) an amino acid replacement by threonine at a position corresponding to position 3 in the amino acid sequence of wild-type AAV2 VP1 capsid protein shown by SEQ ID NO:2, (b) an amino acid replacement by histidine at a position corresponding to position 6 in the amino acid sequence of wild-type AAV2 VP1 capsid protein shown by SEQ ID NO:2, and (c) an amino acid replacement by valine at a position corresponding to position 68 in the amino acid sequence of wild-type AAV2 VP1 capsid protein shown by SEQ ID NO:2.
16. A nucleic acid encoding the mutant of an AAV capsid protein according to claim 12.
17. A cell containing the nucleic acid according to claim 16.
18. A method of producing a recombinant AAV particle, the method comprising a step of culturing the cell according to claim 17 to produce a recombinant AAV particle.
19. The method of producing a recombinant AAV particle according to claim 18, wherein the cell according to claim 17 further contains a nucleic acid encoding an AAV Rep protein, a nucleic acid encoding an adenovirus-derived element necessary for formation of an AAV particle, and a nucleic acid having a nucleotide sequence of an AAV genomic DNA.
20. A recombinant AAV particle containing the mutant of an AAV capsid protein according to claim 12.
21. A composition containing the recombinant AAV particle according to claim 20.
22. A method of introducing a gene into a target cell, the method comprising a step of bringing the recombinant AAV particle according to claim 20 into contact with a target cell.
Description:
TECHNICAL FIELD
[0001] The present invention relates to mutants of adeno-associated virus (AAV) capsid protein. The AAV capsid protein mutants of the present invention are particularly useful for gene transfer into a target cell and/or expression of the transgene in the target cell.
BACKGROUND ART
[0002] Adeno-associated virus (AAV) is a non-enveloped virus with a diameter of about 20 nm which infects mammals such as humans and primates, and is classified into family Parvoviridae, genus Dependovirus. To date, a large number of AAV serotypes have been identified (for example, Non-Patent Literature 1), and it is known that different serotypes of AAV infect different types of animals or cells.
[0003] The AAV genome is a single stranded DNA (ssDNA) of approximately 4.7 kb, and comprises inverted terminal repeat (ITR) sequences of about 145 bases at both ends. The ITR sequence forms Watson-Crick base pairs by itself to form a T-type hairpin structure comprising cis elements necessary for replication and packaging of the AAV genome. The AAV genome comprises two open reading frames (ORFs) in a region flanked by the ITR sequences. One ORF (also called "rep gene") encodes four Rep proteins (Rep78, Rep68, Rep52 and Rep40). The other ORF (also called "cap gene") encodes three capsid proteins (VP1, VP2 and VP3) and an assembly-activating protein (AAP). The Rep proteins have helicase activity, and are required not only for induction of outer shell formation but also for integration of the AAV genome into a host cell chromosome. On the other hand, a total of 60 molecules of VP1, VP2 and VP3 assemble at a ratio of 1:1:10 to form an icosahedral AAV outer shell. VP1, VP2 and VP3 are mainly different in the N-terminal region. For example, a phospholipase A2 (phospholipase A2: PLA2) domain is present at the N-terminus of VP1. Since the PLA2 domain is present only in VP1, the N-terminal region of VP1 is also called a VP1 unique region (VP1u). The PLA2 domain is known to be exposed to outside of the AAV particle under acidic conditions, though it is usually present inside the AAV particle. Thus it is believed that the PLA2 domain is necessary for AAV to escape from endosome and transfer into a nucleus after the AAV enters a cell (Non-patent Literature 2). AAP is a protein necessary for formation of AAV capsid.
[0004] Replication of AAV in nature depends on the presence of a helper virus such as adenovirus and herpes virus. In the presence of a helper virus, the AAV genome is replicated in a host cell and a complete AAV particle containing the AAV genome is formed. Then, the AAV particle is released from the host cell. In the absence of a helper virus, the AAV genome is episomally maintained, or is integrated into a host chromosome and becomes latent.
[0005] AAV can infect a wide variety of cells including human cells, and AAV infects even non-dividing cells in which differentiation terminates, including blood cells, muscle cells, and nerve cells. In addition, since AAV is not pathogenic to human, it has a low risk of adverse effect. The virus particle of AAV is physicochemically stable. For these reasons, AAV has recently attracted attention to utility value as a vector for gene transfer used in gene therapy for the treatment of congenital genetic disease as well as the treatment of cancer or infection.
[0006] Production of genetically modified AAV (hereinafter, referred to as recombinant AAV) is usually performed by introducing elements essential for formation of an AAV particle in the form of a nucleic acid construct(s) into a cell to produce a cell having the ability to produce the virus (hereinafter, referred to as a virus-producing cell), and culturing the cell to express the elements essential for AAV particle formation. In general, of the elements essential for AAV particle formation, the elements that need to be provided in cis and the elements that can be provided in trans are separately introduced into a cell as separate constructs, thereby production of a wild-type AAV and self-replication of a recombinant AAV in a host are prevented.
[0007] Generally, the virus-producing cell is produced by introducing three types of plasmids as described below into a cell. 1) A plasmid for supplying a recombinant AAV genome which retains ITR sequences at both ends, from which rep and cap genes are removed, and which carries a desired heterologous polynucleotide (sometimes referred to as a transgene) in place of the removed rep and cap genes (hereinafter, referred to as a vector plasmid); 2) a plasmid for supplying Rep proteins and capsid proteins (hereinafter, referred to as a packaging plasmid); and 3) a plasmid for supplying only elements essential for AAV particle formation among adenovirus-derived elements (hereinafter, referred to as a helper plasmid).
[0008] Using a recombinant AAV particle loaded with a desired heterologous polynucleotide enables long-term stable gene transfer into various target cells or target organs. To date, it has been shown that gene transfer into skeletal muscle cells, liver cells (liver), cardiomyocytes (heart), nerve cells, pancreatic gland cells, and pancreatic islet cells is possible. Furthermore, a recombinant AAV has been used in human clinical trials.
[0009] On the other hand, attempts to change the cell tropism of AAV (Patent Literature 1) or to increase gene transfer efficiency (for example, Patent Literature 2 and Patent Literature 3) were made by altering capsid proteins. For example, Patent Literature 2 discloses that long-term survival of AAV in a living body becomes possible by replacing an antigenic residue present on the outer shell surface of AAV with another amino acid to avoid removal of AAV particles by a neutralizing antibody, and as a result, the gene transfer efficiency is increased. Patent Literature 3 discloses that long-term survival of AAV in a living body becomes possible by replacing a tyrosine residue present on the outer shell surface of AAV with another amino acid (for example, phenylalanine) to inhibit ubiquitination of tyrosine in a cell and avoid ubiquitin-proteasome hydrolysis, and as a result, the gene transfer efficiency is increased.
CITATION LIST
Patent Literatures
[0010] Patent Literature 1: WO 2014/103957
[0011] Patent Literature 2: WO 2014/194132
[0012] Patent Literature 3: WO 2008/124724
Non-Patent Literatures
[0013] Non-Patent Literature 1: Vandenberghe et al., Human Gene Therapy, Vol. 21, pp. 1251-1257, 2010
[0014] Non-Patent Literature 2: Kronenberg et al., Journal of Virology, Vol. 79, pp. 5296-5303, 2005
SUMMARY OF THE INVENTION
Technical Problems
[0015] As described above, attempts to increase gene transfer efficiency by altering AAV capsid proteins have ever been made. However, such attempts to increase gene transfer efficiency and/or gene expression efficiency by using a recombinant AAV still have room for improvement. Specifically, infection of a target cell with AAV and expression of a transgene are accomplished by passing through plural steps. Thus it is expected that the gene transfer efficiency and/or the gene expression efficiency can be synergistically increased by improving each step.
[0016] An object of the present invention is to provide mutants of AAV capsid proteins in order to increase the efficiency of gene transfer into a target cell and/or to increase the efficiency of gene expression by using a recombinant AAV.
Solutions to the Problems
[0017] As a result of intensive efforts to solve the above-described problems, the present inventors found that a desired gene can be introduced into a target cell with high efficiency and the gene can be strongly expressed in the cell by utilizing a novel mutant of an AAV capsid protein. Thus the present invention was completed.
[0018] Specifically, the present invention relates to:
[0019] [1] a mutant of an adeno-associated virus (AAV) capsid protein, comprising one or more amino acid replacements in a PLA2 domain as compared with the amino acid sequence of a wild-type AAV capsid protein,
[0020] wherein the one or more amino acid replacements are located at one or more positions selected from the group consisting of:
[0021] (1) alanine at position 3,
[0022] (2) tyrosine at position 6,
[0023] (3) alanine at position 68,
[0024] (4) aspartic acid at position 87,
[0025] (5) leucine at position 91,
[0026] (6) serine at position 149,
[0027] (7) proline at position 150, and
[0028] (8) serine at position 156 in the amino acid sequence of AAV2 VP1 capsid protein, or at one or more positions corresponding to the above (1) to (8) in the amino acid sequence of VP1 capsid protein of an AAV other than AAV2;
[0029] [2] the mutant of an AAV capsid protein according to [1], wherein the one or more amino acid replacements are one or more amino acid replacements selected from the group consisting of:
[0030] (1) a replacement of alanine at position 3 by threonine (A3T),
[0031] (2) a replacement of tyrosine at position 6 by histidine (Y6H),
[0032] (3) a replacement of alanine at position 68 by valine (A68V),
[0033] (4) a replacement of aspartic acid at position 87 by asparagine (D87N),
[0034] (5) a replacement of leucine at position 91 by proline (L91P),
[0035] (6) a replacement of serine at position 149 by tyrosine (S149Y),
[0036] (7) a replacement of proline at position 150 by histidine (P150H), and
[0037] (8) a replacement of serine at position 156 by tyrosine (S156Y) in the amino acid sequence of AAV2 VP1 capsid protein, or one or more amino acid replacements corresponding to the above (1) to (8) in the amino acid sequence of VP1 capsid protein of an AAV other than AAV2;
[0038] [3] the mutant of an AAV capsid protein according to [1], wherein the one or more amino acid replacements are one or more amino acid replacements selected from the group consisting of:
[0039] (1) a replacement of alanine at position 3 by threonine (A3T),
[0040] (2) a replacement of tyrosine at position 6 by histidine (Y6H), and
[0041] (3) a replacement of alanine at position 68 by valine (A68V) in the amino acid sequence of AAV2 VP1 capsid protein, or one or more amino acid replacements corresponding to the above (1) to (3) in the amino acid sequence of VP1 capsid protein of an AAV other than AAV2;
[0042] [4] the mutant according to any one of [1] to [3], which is a mutant of AAV2 capsid protein;
[0043] [5] a nucleic acid encoding the mutant of an AAV capsid protein according to any one of [1]-[4];
[0044] [6] a cell containing the nucleic acid according to [5];
[0045] [7] a method of producing a recombinant AAV particle, the method comprising a step of culturing the cell according to [6] to produce a recombinant AAV particle;
[0046] [8] the method of producing a recombinant AAV particle according to [7], wherein the cell according to [6] further contains a nucleic acid encoding an AAV Rep protein, a nucleic acid encoding an adenovirus-derived element necessary for formation of an AAV particle, and a nucleic acid having a nucleotide sequence of an AAV genomic DNA; [9] a recombinant AAV particle containing the mutant of an AAV capsid protein according to any one of [1]-[4];
[0047] [10] a composition containing the recombinant AAV particle according to [9]; and
[0048] [11] a method of introducing a gene into a target cell, the method comprising a step of bringing the recombinant AAV particle according to [9] into contact with a target cell.
Effects of the Invention
[0049] According to the present invention, a gene transfer system useful for gene transfer into a target cell is provided. The recombinant AAV particle of the present invention can introduce a gene into a target cell with high efficiency, allow the gene introduced into the target cell to be transcribed with high efficiency, and then allow the gene to be strongly expressed.
BRIEF DESCRIPTION OF DRAWINGS
[0050] FIG. 1 shows results of electrophoresis in Example 1.
[0051] FIG. 2 shows results of fluorescence microscope observation in Example 3.
DESCRIPTION OF EMBODIMENTS
[0052] As used herein, the term "adeno-associated virus (AAV)" refers to small virus that infects primates and other mammals including humans and is classified into family Parvoviridae, genus Dependovirus. AAV has a non-enveloped icosahedral outer shell and a single-stranded genomic DNA within the shell. As used herein, if not otherwise specified, AAV includes wild-type virus and its derivatives, and also includes all serotypes and clades. As used herein, the serotype of an AAV particle is based on the serotype from which capsid is derived. In other words, the serotype of a recombinant AAV particle is determined based on the source of cap gene used for preparation of the recombinant AAV particle, and does not depend on the serotype of an AAV genome encapsulated in the recombinant AAV particle. For example, when capsid protein is derived from AAV6 and ITR sequences in an AAV genome encapsulated in a recombinant AAV particle are derived from AAV2, the recombinant AAV particle is defined as serotype 6.
[0053] As used herein, the term "capsid protein" means a protein which is encoded by cap gene present in a viral genome and constitutes the outer shell of virus. The wild-type AAV genome or cap gene encodes three capsid proteins (VP1, VP2 and VP3). As used herein, all of VP1, VP2 and VP3 are included in the capsid protein.
[0054] As used herein, the term "AAV particle" means a particle having a complete outer shell structure. An AAV genome may or may not be contained within the outer shell. In other words, as used herein, the AAV particle also includes an AAV particle containing a recombinant AAV genome (sometimes referred to as an AAV vector) and an AAV-like particle that does not contain an AAV genome (for example, an AAV hollow particle: WO 2012/144446).
[0055] As used herein, the term "recombinant" means production using genetic recombination technology. For example, a recombinant AAV particle means an AAV particle produced using genetic recombination technology, and a recombinant DNA means a DNA produced using genetic recombination technology.
[0056] As used herein, the term "wild-type" means the type most commonly found in a wild population among species. In contrast to a mutant-type, the wild-type refers to a phenotype that is considered basic or an individual having the phenotype. The wild-type is also called "normal-type". On the other hand, as used herein, the term "mutant" means a protein, virus, cell, individual or the like expressing a change in trait caused by a mutated gene. Furthermore, as used herein, the term "mutant" may also refer to the mutated gene itself.
[0057] As used herein, the term "amino acid replacement" means a replacement of an amino acid in a protein molecule by another amino acid due to non-synonymous mutation. The amino acid replacement may be naturally occurring due to differences between species or individuals, or may be artificially induced. The artificial induction may be performed by a known method. For example, a polypeptide comprising an amino acid sequence having one or several amino acid replacements can be produced by introducing a base replacement, deletion, addition or insertion into a nucleic acid encoding the polypeptide by a known method.
[0058] The present invention is explained in detail below.
(I) AAV Capsid Protein Mutant
[0059] The mutant of an AAV capsid protein of the present invention is produced by replacing at least one amino acid with another amino acid in the amino acid sequence of an AAV capsid protein. Use of the AAV capsid protein mutant enables introduction of a gene into a target cell with high efficiency and strong expression of the gene in the cell.
[0060] The serotype or origin of the AAV capsid protein that can be used in the present invention is not particularly limited, and may be any known serotype or origin. Examples of the AAV capsid proteins that can be used in the present invention include, but not limited to, capsid proteins of any AAV including AAV from primates such as AAV type 1 (AAV1), AAV type 2 (AAV2), AAV type 3 (AAV3a and AAV3b), AAV type 4 (AAV4), AAV type 5 (AAV5), AAV type 6 (AAV6), AAV type 7 (AAV7), AAV type 8 (AAV8), AAV type 9 (AAV9), AAV type 10 (AAV10), AAV type 11 (AAV11), AAV type 12 (AAV12), and AAV type 13 (AAV13), and AAV from non-primate animals such as avian AAV, bovine AAV, canine AAV, equine AAV, ovine AAV, and goat AAV. In addition, AAV capsid proteins derived from any known serotype AAV or capsid proteins of any known recombinant AAV can be also used in the present invention. For example, the amino acid replacement as identified by the present invention can be introduced simultaneously with a mutation known to increase gene transfer efficiency and/or gene expression efficiency into an AAV capsid protein to synergistically increase the gene transfer efficiency and/or gene expression efficiency of AAV having the capsid protein. Furthermore, the present invention may be combined with a known mutation that changes stability or cell tropism. In the present invention, AAV2 capsid protein can be preferably used. The amino acid sequence of wild-type AAV2 VP1 is shown in SEQ ID NO: 2.
[0061] A person skilled in the art can easily identify a position in the amino acid sequence of an capsid protein of an AAV serotype or clade other than AAV2 corresponding to each amino acid position in the amino acid sequence of AAV2 capsid protein. See, for example, amino acid sequence alignments of VP1 described in Gao et al., Proc. Natl. Acad. Sci. USA, Vol. 99, No. 18, pp. 11854-11859, 2002.
[0062] The amino acid replacement in the AAV capsid protein mutant of the present invention occurs in a position selected from (1) alanine at position 3, (2) tyrosine at position 6, (3) alanine at position 68, (4) aspartic acid at position 87, (5) leucine at position 91, (6) serine at position 149, (7) proline at position 150, and (8) serine at position 156 in the amino acid sequence of wild-type AAV2 VP1 capsid protein, or in a position selected from positions corresponding to the above (1) to (8) in the amino acid sequence of VP1 capsid protein of AAV other than AAV2. As used herein, the term "AAV other than AAV2" means AAV of a serotype or clade other than AAV2, and examples thereof include, but not limited to, AAV1, AAV3 (AAV3a and AAV3b), AAV4, AAV5, AAV6, AAV7, AAV8, AAV9, AAV10, AAV11, AAV12, and AAV13, and AAV from non-primate animals such as avian AAV, bovine AAV, canine AAV, equine AAV, ovine AAV, and goat AAV. As used herein, the phrase "a position(s) corresponding to" or "one or more positions corresponding to" means, in the case where the AAV capsid protein mutant of the present invention is an AAV2 capsid protein mutant, the amino acid position(s) represented by the above (1) to (8), and in the case where the AAV capsid protein mutant of the present invention is a mutant of capsid protein of AAV of a serotype or clade other than AAV2, a position(s) corresponding to the above (1) to (8) in the amino acid sequence of VP1 capsid protein of AAV of the serotype or clade. Such corresponding positions in the amino acid sequence of VP1 capsid protein of an AAV serotype or clade other than AAV2 are easily determined by a person skilled in the art as described above.
[0063] The positions of the amino acid replacements all are present in the PLA2 domain. The PLA2 domain is present in VP1 but not in VP2 and VP3. In other words, the capsid protein that can be used in the present invention is preferably a protein containing a PLA2 domain, such as VP1. Examples of the protein containing a PLA2 domain include, but not limited to, a full-length VP1, a VP1 fragment, a PLA2 domain, and a fusion protein of a PLA2 domain and another protein.
[0064] In the AAV capsid protein mutant of the present invention, an amino acid residue after the amino acid replacement is not particularly limited as long as the desired function is obtained. The amino acid residue after the amino acid replacement may be a natural amino acid or an artificial amino acid as long as the desired function is obtained. There are 20 amino acids in nature except for some special amino acids. The natural amino acids are classified into several groups based on their structures. Examples of the groups include, but not limited to, group A: glycine, alanine; group B: valine, leucine, isoleucine; group C: aspartic acid, glutamic acid; group D: asparagine, glutamine; group E: serine, threonine; group F: lysine, arginine, histidine; group G: phenylalanine, tyrosine, tryptophan; group H: cysteine, methionine; and group I: proline. Since amino acid residues contained in the same group have similar property, it is expected that they are mutually exchangeable.
[0065] Examples of the amino acid replacement include, but not limited to, (1) a replacement of alanine at position 3 by threonine (A3T), (2) a replacement of tyrosine at position by histidine (Y6H), (3) a replacement of alanine at position 68 by valine (A68V), (4) a replacement of aspartic acid at position 87 by asparagine substitution (D87N), (5) a replacement of leucine at position 91 by proline (L91P), (6) a replacement of serine at position 149 by tyrosine (S149Y), (7) a replacement of proline at position 150 by histidine (P150H), and (8) a replacement of serine at position 156 by tyrosine (S156Y) in the amino acid sequence of AAV2 VP1 capsid protein, and amino acid replacements corresponding to the above (1) to (8) in the amino acid sequence of VP1 capsid protein of AAV other than AAV2. As used herein, the phrase "an amino acid replacement(s) corresponding to" or "one or more amino acid replacements corresponding to" means, in the case where the AAV capsid protein mutant of the present invention is an AAV2 capsid protein mutant, the amino acid replacement(s) represented by the above (1) to (8), and in the case where the AAV capsid protein mutant of the present invention is a mutant of a capsid protein of an AAV serotype or clade other than AAV2, the corresponding amino acid replacements that occur in positions corresponding to the amino acid positions represented by the above (1) to (8) in the amino acid sequence of VP1 capsid protein of the AAV serotype or clade. As described above, the corresponding amino acid positions in the amino acid sequence of VP1 capsid protein of an AAV serotype or clade other than AAV2 are easily determined by a person skilled in the art.
[0066] Preferable examples of the amino acid replacements include one or more amino acid replacements selected from the group consisting of (1) a replacement of alanine at position 3 by threonine (A3T), (2) a replacement of tyrosine at position 6 by histidine (Y6H), and (3) a replacement of alanine at position 68 by valine (A68V) in the amino acid sequence of AAV2 VP1 capsid protein, and one or more amino acid replacements selected from the group consisting of amino acid replacements corresponding to the above (1) to (3) in the amino acid sequence of VP1 capsid protein of an AAV other than AAV2.
[0067] More preferable examples of the amino acid replacements are three amino acid replacements consisting of (1) a replacement of alanine at position 3 by threonine (A3T), (2) a replacement of tyrosine at position 6 by histidine (Y6H), and (3) a replacement of alanine at position 68 by valine (A68V) in the amino acid sequence of AAV2 VP1 capsid protein, or three amino acid replacements consisting of amino acid replacements corresponding to the above (1) to (3) in the amino acid sequence of VP1 capsid protein of an AAV other than AAV2. For example, a protein represented by SEQ ID NO: 6, which is obtained by introducing the three amino acid replacements (A3T/Y6H/A68V) into the VP1 of wild-type AAV2, is an example of the present invention.
(II) Nucleic Acid Encoding AAV Capsid Protein Mutant
[0068] The present invention provides a nucleic acid encoding a mutant of an AAV capsid protein. The nucleic acid of the present invention encodes the mutant of an AAV capsid protein as described in above (I). The nucleic acid of the present invention is produced by replacing at least one base in the nucleotide sequence of a nucleic acid (cap gene) encoding an AAV capsid protein with another base.
[0069] The nucleic acid of the present invention may be present in the form of DNA, or may be in the form of RNA or a chimera of DNA and RNA. The nucleic acid of the present invention also includes a complementary nucleic acid (for example, cDNA). The nucleic acid of the present invention may be single-stranded or double-stranded. The nucleic acid of the present invention is preferably double-stranded.
[0070] The serotype or origin of the cap gene of AAV that can be used in the present invention is not particularly limited, and may be any known serotype or origin. Examples of the AAV serotype that can be used in the present invention include, but not limited to, any AAV such as AAV type 1 (AAV1), AAV type 2 (AAV2), AAV type 3 (AAV3a and AAV3b), AAV type 4 (AAV4), AAV type 5 (AAV5), AAV type 6 (AAV6), AAV type 7 (AAV7), AAV type 8 (AAV8), AAV type 9 (AAV9), AAV type 10 (AAV10), AAV type 11 (AAV11), AAV type 12 (AAV12), and AAV type 13 (AAV13), avian AAV, bovine AAV, canine AAV, equine AAV, ovine AAV, and goat AAV. In addition, a cap gene derived from any known serotype AAV or a cap gene of any known recombinant AAV can be also used in the present invention. In the present invention, AAV2 cap gene can be preferably used. The nucleotide sequence of wild-type AAV2 cap gene (nucleotide sequence encoding VP1) is shown in SEQ ID NO: 1.
[0071] Examples of the nucleic acid encoding a mutant of an AAV capsid protein include, but not limited to, a nucleic acid encoding AAV2 VP1 (A68V) (SEQ ID NO: 3), and a nucleic acid encoding AAV2 VP1 (A3T/Y6H/A68V) (SEQ ID NO: 5).
[0072] The nucleic acid of the present invention may be operably linked to an appropriate regulatory sequence. Examples of the regulatory sequence include a promoter sequence, a polyadenylation signal, a transcription termination sequence, an upstream regulatory domain, an internal ribosome entry site (IRES), and an enhancer. Examples of the promoter sequence include an inducible promoter sequence, and a constitutive promoter sequence. The regulatory sequence may be inherent in or foreign to the AAV from which the capsid protein is derived, and may be a natural sequence or a synthetic sequence. A recombinant DNA comprising the nucleic acid of the present invention which is capable of expressing an AAV capsid protein mutant is also included in the present invention.
[0073] The recombinant DNA is useful for delivering the nucleic acid of the present invention to cells in vitro, ex vivo or in vivo to impart ability to express the AAV capsid protein mutant to the cells. The cell to which the nucleic acid of the present invention has been delivered is useful for production of a recombinant AAV particle. The recombinant DNA can be used particularly for delivery or introduction of the nucleic acid of the present invention to eukaryotic cells, preferably animal cells, more preferably mammalian cells.
[0074] In the present invention, a DNA used as a vector is loaded with the nucleic acid of the present invention to produce a recombinant DNA. For example, a plasmid, a phage, a transposon, a cosmid, an episomal DNA, a viral genome or the like can be used.
[0075] For example, a plasmid can be loaded with the nucleic acid (cap gene) encoding the AAV capsid protein mutant of the present invention to produce a packaging plasmid. The packaging plasmid may further contain any nucleotide sequence such as a nucleic acid encoding a Rep protein (a rep gene).
[0076] A recombinant DNA comprising the nucleic acid of the present invention can be also produced by replacing at least one base in the PLA2 domain-encoding region in the nucleotide sequence of a cap gene loaded into a known packaging plasmid with another base. Examples of the packaging plasmid include, but not limited to, a packaging plasmid loaded with a cap gene, preferably a packaging plasmid loaded with a cap gene and a rep gene. An example of the packaging plasmid loaded with a cap gene and a rep gene is pAAV-Ad-ACG2 (SEQ ID NO: 7).
[0077] Introduction of a base replacement into a nucleic acid may be performed by a known method, and for example, it is achieved by performing PCR using a commercially available reagent such as Mutagenesis Basal Kit (manufactured by TAKARA BIO INC.) following instructions attached to the kit.
(III) Cell Containing the Nucleic Acid of the Present Invention
[0078] The present invention also provides a cell, for example an isolated cell, containing the nucleic acid of the present invention, specifically the recombinant DNA as described in above (II). The isolated cell is, for example, a cell line maintained in vitro. The cell of the present invention is useful for production of the recombinant AAV particle of the present invention as explained below. When the cell of the present invention is used to produce a viral particle, the cell is referred to as "a virus-producing cell" (also referred to as a packaging cell or a producer cell). The recombinant DNA of the present invention as described in above (II) may be integrated into the genome of the cell of the present invention, or may be retained within the cell so as to transiently express the AAV capsid protein mutant.
[0079] Examples of a method for introducing a recombinant DNA (nucleic acid construct) containing the nucleic acid of the present invention into a cell include transient or constitutive introduction methods. Examples of a transient introduction method include, but not limited to, any known transient introduction methods, such as a calcium phosphate method, a lipofection method, a DEAE dextran method, a polyethyleneimine method, and an electroporation method. A commercially available reagent, for example, TransIT (registered trademark)-293 Reagent (manufacture by Mirus Bio LLC), TransIT (registered trademark)-2020 (manufacture by Mirus Bio LLC), Lipofectamine (registered trademark) 2000 Reagent (manufactured by Thermo Fisher Scientific Inc.), Lipofectamine (registered trademark) 2000CD Reagent (manufactured by Thermo Fisher Scientific Inc.), or FuGene (registered trademark) Transfection Reagent (manufactured by Promega Corporation) may be used. Baculovirus can also be used to introduce a nucleic acid construct into an insect cell.
[0080] Examples of a constitutive introduction method include, but not limited to, any known constitutive introduction methods, such as a method comprising use of a retrovirus vector, and a method comprising introducing a plasmid by a transient introduction method as described above and selecting cells in which a recombinant DNA is integrated into the chromosomes of the cells. In the method comprising use of a retrovirus vector, a commercially available reagent such as Retorovirus Constructive System (manufactured by TAKARA BIO INC.) may be used.
[0081] The recombinant DNA of the present invention is stably or transiently introduced into cells by using such established techniques. For stable transformation, a selection marker, for example, a well-known selection marker such as a neomycin resistance gene (encoding neomycin phosphotransferase) or a hygromycin B resistance gene (encoding aminoglycoside phosphotransferase) can be linked with the recombinant DNA of the present invention.
[0082] As a cell into which the nucleic acid of the present invention is introduced, various eukaryotic cells such as mammalian cells including rodent cells and primate cells (for example, human cells), and insect cells can be used. The cell into which the nucleic acid of the present invention is introduced may be a primary cultured cell or a cell line. Examples of a suitable cell line include a 293 cell (ATCC CRL-1573), a 293T cell, a 293F cell, a 293FT cell, a 293EB cell, a COS cell, a HeLa cell, a Vero cell, a 3T3 mouse fibroblast, a C3H10T1/2 fibroblast, a CHO cell, a Sf9 cell (ATCC CRL-1711), a AAV 293 cell (manufactured by Stratagene), and cells derived from these cells. In the present invention, for example, preferably used is a cell modified so as to transiently or constitutively express one or some of proteins necessary for production of a recombinant AAV, such as the 293 cell or the like which constitutively expresses adenovirus E1 protein.
(IV) Recombinant AAV Particle and Method of Producing Recombinant AAV Particle
[0083] The recombinant AAV particle of the present invention is a recombinant AAV particle comprising a mutant of an AAV capsid protein. The recombinant AAV particle can be produced from the cell as described in above (III). The recombinant AAV particle of the present invention is useful for introduction of a gene into a target cell. The gene introduced by the recombinant AAV particle of the present invention is strongly expressed in the target cell.
[0084] The recombinant AAV particle can be produced using a cell containing several elements necessary for production of AAV particles as a virus-producing cell. The first element is a "recombinant AAV genome" to be replicated in cells and packaged in AAV particles. The recombinant AAV genome comprises a desired heterologous polynucleotide and two inverted terminal repeat (ITR) sequences located on either side, i.e. 5'-side and 3'-side of the desired heterologous polynucleotide. The desired heterologous polynucleotide may have a gene that is desired to be expressed in a cell infected with the recombinant AAV particle, and a regulatory sequence for the expression. The nucleotide sequence of the ITR sequence is known. For example, for ITR sequences derived from AAV2, see Kotin R. M. et al., Human Gene Therapy, volume 5, pages 793-801, 1994. ITR sequences derived from any of various AAV serotypes, such as AAV1, AAV2, AAV3, AAV4, AAV5, and AAV7, can be used. The ITR sequences used in the present invention may be sequences derived from a wild-type AAV or may be sequences altered by insertion, deletion or replacement of a nucleotide(s). The ITR sequences allow replication of the recombinant AAV genome in the presence of Rep protein and allow packaging of the recombinant AAV genome into a capsid particle during AAV particle formation.
[0085] The desired heterologous polynucleotide with which the recombinant AAV genome can be loaded generally has a size of less than about 5 kilobases (kb). The recombinant AAV genome can be loaded with a heterologous nucleotide depending on the purpose, for example a gene encoding a desired protein which has been deleted or lost in a recipient, a gene encoding a protein having a desired biological or therapeutic activity (for example, antibacterial, antiviral or antitumor activity), a desired nucleotide sequence encoding an RNA that inhibits or reduces the production of a harmful or undesired protein, a nucleotide sequence encoding an antigenic protein, or a gene encoding a marker protein (for example, EGFP, luciferase, LacZ).
[0086] In an aspect of the present invention, the recombinant AAV genome lacks the cap gene region and/or the rep gene region. In this aspect, when AAV particles in which the recombinant AAV genome has been packaged infect cells, the AAV particles do not replicate alone in the infected cells.
[0087] For example, a plasmid may be used to introduce the first element (recombinant AAV genome) into cells. When the first element is introduced into cells by a plasmid, the plasmid is referred to as a vector plasmid.
[0088] The second element necessary for necessary for production of AAV particles is a "nucleic acid construct that provides packaging function". The nucleic acid construct encodes a gene derived from AAV that provides a protein necessary for formation of AAV particles. In other words, the nucleic acid construct contains the rep gene region or the cap gene region or both, which are major ORFs of AAV. In order to produce the recombinant AAV particle of the present invention, the nucleic acid encoding the AAV capsid protein mutant of the present invention is used as the cap gene. The virus-producing cell as described in above (III) which has the ability to express the above-described mutant can be used for production of AAV particles. The outer shell of AAV particles is formed by assembling many molecules of capsid proteins VP1, VP2 and VP3. In the recombinant AAV particle of the present invention, all molecules of capsid protein VP1 may be the mutants, or a part of molecules of capsid protein VP1 constituting the outer shell of the AAV particle may be the mutants and the rest may be the wild-type capsid protein VP1. Furthermore, capsid proteins VP2 and VP3 constituting the outer shell of the recombinant AAV particle of the present invention may also have mutations. The capsid protein mutants contained in the recombinant AAV particle of the present invention may be a single type of mutants or plural types of mutants.
[0089] The AAV rep gene encodes four Rep proteins (Rep 78, Rep 68, Rep 52 and Rep 40). These Rep proteins are shown to have many functions, for example recognition, binding and nicking of DNA replication origin of an AAV genome, DNA helicase activity, and alteration of transcription by an AAV-derived promoter.
[0090] For example, a plasmid may be used to introduce the second element (a nucleic acid construct that provides packaging function) into cells. When the second element is introduced into cells by a plasmid, the plasmid is referred to as a packaging plasmid.
[0091] The third element necessary for production of AAV particles is a "helper virus function (also called accessory function)" for AAV replication. For introduction of the helper virus function, a virus or a nucleic acid construct can be used. When a virus is used, though adenovirus is generally used, a virus such as herpes simplex virus type 1 or 2 or vaccinia virus can also be used. When a virus is used, the cells into which the first element and the second element have been introduced are infected with the virus as a helper virus. Because packaging of AAV particles only requires expression of adenovirus early genes, for example, an adenovirus that does not express late genes may be used. An adenovirus mutant that is deficient in late gene expression (for example, ts100K or ts149 adenovirus mutant) can be used. When a nucleic acid construct is used, a nucleic acid construct that provides the helper virus function is prepared from a nucleic acid necessary for the helper virus function which is isolated from a helper virus, and then introduced into the cells. The nucleic acid construct that provides the helper virus function comprises a nucleotide sequence for providing one or more kinds of helper virus function, and is provided to the cells in the form of a plasmid, phage, transposon, cosmid or another virus.
[0092] For example, a plasmid may be used to introduce the third element (helper virus function) into cells. When the third element is introduced into cells by a plasmid, the plasmid is referred to as a helper plasmid. A commercially available helper plasmid, for example, pHelper Vector (manufactured by TAKARA BIO INC.) may be used.
[0093] For production of AAV particles, 1) a step of introducing the first element, i.e. the recombinant AAV genome, into cells, 2) a step of introducing the second element, i.e. the nucleic acid construct that provides packaging function, into cells, and 3) a step of introducing the third element, i.e. the helper virus function, into cells are performed. These steps may be performed simultaneously or sequentially. The steps 1) to 3) may be performed in any order. Virus-producing cells thus produced are cultured. In the virus-producing cells, the recombinant AAV genome is excised by the expression product of the rep gene and then replicated. The expressed capsid proteins form an outer shell, and the recombinant AAV genome is packaged in the outer shell to produce AAV particles. When the virus-producing cell expresses a mutant of an AAV capsid protein, the outer shell of the produced AAV particle contains the mutant of the AAV capsid protein. The cells into which the first to third elements are introduced are the same as the "cells into which the nucleic acid of the present invention is introduced" described in above (III).
[0094] Culturing of the virus-producing cells can be performed under known culture conditions. Examples of the culture conditions include, but not limited to, a temperature of 30 to 40.degree. C., preferably 37.degree. C., a humidity of 90 to 99%, preferably 95%, and CO.sub.2 concentration of 2 to 10%, preferably CO.sub.2 concentration of 5%. Temperature, humidity and CO.sub.2 concentration lying out of the above-mentioned ranges may be used as long as growth of the virus-producing cells and production of the recombinant AAV are achieved. Culture time is not particularly limited, and examples thereof include 12 to 150 hours, preferably 48 to 120 hours. A medium used for culturing the virus-producing cells may contain components necessary for cell culture. Examples of the medium include basal synthetic media such as DMEM, IMDM, and DMEM:F-12, the basal synthetic media additionally containing, if necessary, fetal bovine serum, growth factors and peptides, and the basal synthetic media containing an increasing amounts of amino acids.
[0095] The recombinant AAV particles formed in the virus-producing cells remain in the cells or are released into a culture supernatant. It is known that the abundance ratio of recombinant AAV particles in virus-producing cells to those in the culture supernatant differs depending on AAV serotypes (Adachi et al., Gene Therapy and Regulation, Vol. 5, pp. 31-55, 2010). For purifying the recombinant AAV particles from the virus-producing cells, a sample containing the recombinant AAV particles is prepared by disrupting the cells using a known method or by bringing the cells into contact with an acidic solution (WO 2015/005430). The sample thus prepared is subjected to a purification step. On the other hand, for purifying the recombinant AAV particles from the culture supernatant, the culture supernatant may be directly subjected to a purification step, or may be concentrated and then subjected to a purification step. The culture supernatant may be concentrated by a known method, or by using a commercially available reagent such as AAVpro (registered trademark) Concentrator (manufactured by TAKARA BIO INC.).
[0096] Examples of a purification method of AAV particles include, but not limited to, various purification methods such as CsCl gradient ultracentrifugation, chromatography, and ultrafiltration. The AAV particles can be isolated and purified from a sample containing the recombinant AAV particles by appropriately using the above-described purification methods. The AAV particles can also be purified by using commercially available reagents, such as AAVpro (registered trademark) Purification Kit (All Serotypes) (manufactured by TAKARA BIO INC.).
[0097] When a helper virus is used in above step 3) (a step of introducing the third element, i.e. the helper virus function, into cells), for example, a step of separating the AAV particles and the helper virus based on size may be added. The AAV particles can also be separated from the helper virus based on differences in affinity for heparin. Furthermore, the remaining helper virus can be inactivated using a known method. For example, adenovirus can be inactivated by heating at about 60.degree. C., for example for 20 minutes or more. This treatment is effective for selective removal of adenovirus used as a helper virus because AAV particles are extremely stable to heat.
[0098] The amount of the recombinant AAV particles is shown as the titer of the recombinant AAV particles or the like. The titer of the recombinant AAV particles is shown as, but not limited to, in a certain amount of a sample, (a) the number of AAV genomes (genomic titer), (b) the infection ability (infectious titer) of AAV to cells as determined experimentally, or (c) the amount (or purity) of protein constituting AAV.
[0099] Examples of a method for determining above (a) include a method comprising determination of the copy number (genome copy: g.c.) of the AAV genome in a sample containing the AAV particles by PCR. For the determination of genomic titer, for example, AAVpro (registered trademark) Titration Kit (for Real Time PCR) Ver. 2 (manufactured by TAKARA BIO INC.) is used, and the genomic titer can be calculated by a method as described in the attached instruction manual. Examples of a method for determination of above (b) include a method comprising infection of a suitable target cell with serially diluted solutions of a sample containing the AAV particles and detection of change in the form of the cell (cytopathy), a method comprising detection of the expression of a transgene, and a method comprising determination of the copy number of the AAV genome introduced into the cell. Examples of a method for determination of above (c) include a method comprising SDS-PAGE analysis of the protein and a method comprising quantitative determination of the protein by an immunological technique.
(V) Method for Introduction of Gene into Target Cell Comprising Step of Contacting Recombinant AAV Particle with Target Cell
[0100] The purified recombinant AAV particles of the present invention are used for delivery of a desired heterologous polynucleotide to a target cell, for the purpose of gene therapy and other purposes. In general, the AAV particles introduce a desired gene into a target cell in vivo or in vitro. For in vitro gene introduction, the AAV particles are brought into contact with cells obtained from a living organism. The cells can also be transplanted into a living body. For transplantation of the cells into a living body, the cells are formulated as a pharmaceutical composition, and various techniques such as intramuscular, intravenous, subcutaneous and intraperitoneal administration can be used. For in vivo gene introduction, the AAV particles are formulated as a pharmaceutical composition, and the pharmaceutical composition is generally administered parenterally (for example, administered via an administration route such as intramuscularly, subcutaneously, intratumorally, transdermally, intrathecally, etc.). The pharmaceutical composition comprising the AAV particles contains a pharmaceutically acceptable carrier and optionally other agents, such as a pharmaceutical, a stabilizer, a buffer, a carrier, an adjuvant, and a diluent.
[0101] As the target cell, for example, various eukaryotic cells such as mammalian cells including rodent cells and primate cells (for example, human cells) and insect cells can be used. The target cell may be a primary cultured cell or a cell line. Examples thereof include, but not limited to, a CHO cell, and preferably a CHO-K1 cell.
[0102] As used herein, the term "gene transfer efficiency" means a proportion of the number of cells that have acquired the AAV genome in the number of cells subjected to gene introduction. Moreover, it is possible to estimate the gene transfer efficiency on the basis of the degree of introduction of the desired heterologous nucleotide per target cell, that is, the copy number of the AAV genome per cell. The introduced AAV genome may be integrated into the chromosomes of the target cells or maintained episomally. When the recombinant AAV particle of the present invention is used, it is possible to achieve gene transfer efficiency equal to or higher than that achieved by using a conventional recombinant AAV particle.
[0103] As used herein, the term "gene expression efficiency" means the degree of expression of the desired heterologous nucleotide per target cell. Even when the amount of a transcript (mRNA) is measured instead of the amount of an expression product (protein), the term "gene expression efficiency" is used herein. When the recombinant AAV particle of the present invention is used, it is possible to achieve gene transfer efficiency at least 2 times, at least 3 times, at least 4 times, at least 5 times or at least 10 times that achieved by using a conventional recombinant AAV particle.
EXAMPLES
[0104] The present invention will be more specifically explained by Examples described below, to which the scope of the present invention should not be limited.
Example 1
Isolation of Marmoset AAV
[0105] A genomic DNA was collected from the brain, heart and skeletal muscle of an aged common marmoset (10 years-old or older, died of debilitation). Then, 293EB cells were transfected with the genomic DNA, pAdS (manufactured by Agilent Technologies Inc.), pSV3neo-LargeT and pE1A55 (WO2012/144446), and then cultured. The cells were collected, and a cell lysate was prepared. Then, 293 cells were transfected with the lysate and adenovirus type 5 (Ad5), and then cultured. The cells were collected, and a cell lysate was prepared. Using the lysate as a template, a primer set designed for a highly conserved region of AAV, and Tks Gflex (trademark) DNA polymerase (manufactured by TAKARA BIO INC.), PCR was performed for 50 cycles of 10 seconds at 98.degree. C. and 15 seconds at 61.degree. C. When PCR amplified products were loaded on an agarose gel and electrophoresed, a band of an amplified product corresponding to AAV was found in a sample derived from the 293EB cells transfected with the brain-derived genomic DNA (FIG. 1). A DNA fragment extracted from the band was cloned, and its nucleotide sequence was determined. As a result, several marmoset AAV clones were obtained.
Example 2
Comparison of Marmoset AAV with AAV2
[0106] When the amino acid sequence of VP1 of marmoset AAV that was determined in Example 1 was compared with the amino acid sequence of VP1 of AAV2 (SEQ ID NO: 2), different amino acids were found at 11 positions (A3T, Y6H, A68V, D87N, L91P, S149Y, P150H, S156Y, Y444F, Y500F, Y730F).
[0107] Among them, the amino acid residues at 8 positions on the N-terminal side (threonine at position 3, histidine at position 6, valine at position 68, asparagine at position 87, proline at position 91, tyrosine at position 149, histidine at position 150, tyrosine at position 156) have never been found in other AAV serotypes and are all located in a VP1 unique region (VP1u).
[0108] On the other hand, the amino acid residues at 3 positions on the C-terminal side (phenylalanine at position 444, position 500 and position 730) have been known in other AAV serotypes, and are located in a common region of VP1, VP2 and VP3.
Example 3
Preparation of AAV2 Mutant
[0109] Mutations were introduced into the cap gene of AAV2 to prepare two AAV2 mutants in which a portion of the amino acid sequence of VP1 was replaced with an amino acid sequence derived from VP1 of marmoset AAV, i.e. AAV2(A68V) and AAV2(A3T/Y6H/A68V). For VP1 of each AAV2 mutant, the nucleotide sequences of cap gene encoding the VP1 and the amino acid sequences of the full length VP1 are shown in Table 1.
TABLE-US-00001 TABLE 1 Nucleotide Amino acid sequence sequence AAV2 VP1 (A68V) SEQ ID NO: 3 SEQ ID NO: 4 AAV2 VP1 (A3T/Y6H/A68V) SEQ ID NO: 5 SEQ ID NO: 6
[0110] The viral genomes of these AAV2 mutants are loaded with an EGFP gene. Cells infected with the AAV2 mutants can express EGFP. A method for producing the AAV2 mutants is shown below.
(1) Preparation of Packaging Plasmid Mutant
[0111] Packaging plasmid pAAV-Ad-ACG2 (SEQ ID NO: 7) contains the rep gene of AAV2 and the cap gene of AAV2. A packaging plasmid mutant, pAAV-Ad-ACG2(A68V), was produced by performing PCR using pAAV-Ad-ACG2 as a template, a mutant-1F primer (SEQ ID NO: 8), a mutant-1R primer (SEQ ID NO: 9), and PrimeSTAR (registered trademark) Mutagenesis Basal Kit (manufactured by TAKARA BIO INC.) following instructions attached to the kit. The cap gene present on this mutant plasmid contains the nucleotide sequence shown by SEQ ID NO: 3 in the VP1 coding region. Similarly, pAAV-Ad-ACG2(A3T/Y6H/A68V) was produced by performing PCR using the above-described pAAV-Ad-ACG2(A68V) as a template, a mutant-2F primer (SEQ ID NO: 10) and mutant-2R primer (SEQ ID NO: 11). The cap gene present on this mutant plasmid contains the nucleotide sequence shown by SEQ ID NO: 5 in the VP1 coding region.
(2) Introduction of Plasmid into 293EB Cell
[0112] Each packaging plasmid mutant prepared in Example 3-(1), a helper plasmid (pHelper Vector, manufactured by TAKARA BIO INC.) and a vector plasmid (pAAV-CB-EGFP, SEQ ID NO: 12) were introduced into 293EB cells by a transfection method using polyethylenimine (manufactured by Cosmo Bio Inc.). The 293EB cells were cultured in a DMEM medium containing 1/100 volume of GlutaMax (manufactured by Gibco) at 37.degree. C. and 5% CO.sub.2 for 3 days.
(3) Purification of AAV2 Mutant
[0113] The AAV2 mutants were purified from the 293EB cells cultured as described in Example 3-(2) and a culture supernatant. From the 293EB cells, the AAV2 mutants were purified by using AAVpro (registered trademark) Purification Kit (All Serotypes) (manufactured by TAKARA BIO INC.) following instructions attached to the kit. From the culture supernatant, the AAV2 mutants were purified by using AAVpro (registered trademark) Concentrator (manufactured by TAKARA BIO INC.) following instructions attached to the kit. The AAV2 mutant purified from the 293EB cells and the AAV2 mutant purified from the culture supernatant were mixed and used for the next experiments. These two AAV2 mutants are designated AAV2(A68V) and AAV2(A3T/Y6H/A68V).
(4) Titer Determination of AAV2 Mutant
[0114] The AAV2 mutant solution obtained in Example 3-(3) (5 .mu.L), phosphate buffered saline (PBS) (84.5 .mu.L), 20 mM MgCl.sub.2 (10 .mu.L), and 250 U/.mu.L Benzonase (0.5 .mu.L) were mixed, and incubated at room temperature for 1 hour to degrade free genomic DNAs and plasmid DNAs. After 100 .mu.L of PBS was added, the genomic DNA of AAV was purified by using DNeasy Blood & Tissue Kit (manufactured by Qiagen) following instructions attached to the kit. Using this AAV genomic DNA as a template, an ITR-F primer (SEQ ID NO: 13), an ITR-R primer (SEQ ID NO: 14), and SYBR (registered trademark) Premix DimerEraser (trademark) (Perfect Real Time) (manufactured by TAKARA BIO INC.), quantitative PCR was performed following instructions attached to the kit. On the other hand, as a standard, quantitative PCR was performed under the same conditions as described above except that the vector plasmid linearized by digestion with restriction enzyme Sad was used, and then a standard curve was prepared. Thus, genomic titer of the AAV2 mutants obtained in Example 3-(3) was determined.
Example 4
Infection with AAV2 Mutant
[0115] With 5.times.10.sup.3 g.c./cells of each AAV2 mutant obtained in Example 3-(3), CHO-K1 cells (2.times.10.sup.4 cells) were infected (n=3). As a control, CHO-K1 cells were infected with the wild-type AAV2 under the same conditions. These CHO-K1 cells were cultured on a collagen-coated 96-well plate at 37.degree. C. and 5% CO.sub.2 for 48 hours, and then the expression of EGFP was observed with a fluorescence microscope (FIG. 2).
[0116] Lysis Buffer (manufactured by Thermo Fisher Scientific Inc.) was added to the CHO-K1 cells at 100 .mu.l/well and then incubated at 75.degree. C. for 10 minutes to extract a mixture of DNA and RNA. The mixture of DNA and RNA was stored at -80.degree. C. until use. Then, three experiments as below were performed.
[0117] First, quantitative PCR was performed using the DNA in the mixture as a template, a hamster-actin-F primer (SEQ ID NO: 15), a hamster-actin-R primer (SEQ ID NO: 16), and SYBR (registered trademark) Premix Ex Taq (trademark) (Tli RNase H Plus) (manufactured by TAKARA BIO INC.). The PCR was performed following instructions attached to the kit. From an experimental result, the number of cells in each well (cell) was determined. Next, quantitative PCR was performed using the DNA in the mixture as a template, an ITR-F primer (SEQ ID NO: 13), an ITR-R primer (SEQ ID NO: 14), and SYBR (registered trademark) Premix DimerEraser (trademark) (Perfect Real Time) (manufactured by TAKARA BIO INC.). The PCR was performed following instructions attached to the kit. From an experimental result, the number of genome copies of AAV present in each well (genome copy: g.c.) was determined. Based on these values, the number of AAV genome copies per cell (g.c./cell) was calculated.
[0118] Furthermore, quantitative RT-PCR was performed using the RNA in the mixture as a template, High-Capacity cDNA Reverse Transcription Kit (manufactured by Thermo Fisher Scientific Inc.), an EGFP-F primer (SEQ ID NO: 17) and an EGFP-R primer (SEQ ID NO: 18). The RT-PCR was performed following instructions attached to the kit. From an experimental result, the transcription amount of the EGFP gene in each well (EGFP) was determined. Based on the transcription amount of EGFP (EGFP) and the number of cells (cell), the EGFP transcription amount per cell (EGFP/cell) was calculated.
[0119] Based on the number of AAV genome copies per cell (g.c./cell) and the EGFP transcription amount per cell (EGFP/cell), the EGFP transcription amount per genome copy (EGFP/g.c.) was calculated. Results are shown relatively to results of the wild-type AAV2 in Table 2.
TABLE-US-00002 TABLE 2 g.c./cell EGFP/cell EGFP/g.c. AAV2 1 1 1 AAV2 (A68V) 1.7 4.3 2.5 AAV2 (A3T/Y6H/A68V) 1.1 18.0 16.8 g.c. = genome copy
[0120] As for the number of AAV genome copies per cell (g.c./cell), each AAV2 mutant showed a value not more than 2 times that of the wild-type AAV2, and there was not a large difference. This result suggests that the infection efficiency and gene transfer efficiency of AAV do not differ much between the wild-type AAV2 and the AAV2 mutants.
[0121] As for the EGFP transcription amount per cell (EGFP/cell) and the EGFP transcription amount per genome copy (EGFP/g.c.), however, both of AAV2(A68V) and AAV2(A3T/Y6H/A68V) showed high values as compared with the wild-type AAV2. Particularly, AAV2(A3T/Y6H/A68V) showed very high values, wherein the EGFP transcription amount per cell (EGFP/cell) and the EGFP transcription amount per genome copy (EGFP/g.c.) were 18.0 times and 16.8 times higher than the EGFP/cell and EGFP/g.c. of the wild-type AAV2, respectively. These results show that the efficiency of transcription from the gene introduced into the target cell is high, and thus the transcription amount of the foreign gene per cell is also high. In other words, it is suggested that a foreign gene can be efficiently transcribed and expressed in a target cell by using, for example, AAV2(A3T/Y6H/A68V).
INDUSTRIAL APPLICABILITY
[0122] According to the present invention, mutants of adeno-associated virus (AAV) capsid proteins are provided. The AAV capsid protein mutants of the present invention are particularly useful for introduction of a gene into a target cell and/or expression of the transgene in the target cell.
Sequence Listing Free Text
[0123] SEQ ID NO: 1: a nucleotide sequence encoding AAV2 VP1
[0124] SEQ ID NO: 2: an amino acid sequence of AAV2 VP1
[0125] SEQ ID NO: 3: a nucleotide sequence encoding AAV2 VP1 (A68V)
[0126] SEQ ID NO: 4: an amino acid sequence of AAV2 VP1 (A68V)
[0127] SEQ ID NO: 5: a nucleotide sequence encoding AAV2 VP1 (A3T/Y6H/A68V)
[0128] SEQ ID NO: 6: an amino acid sequence of AAV2 VP1 (A3T/Y6H/A68V)
[0129] SEQ IS NO: 7: a nucleotide sequence of pAAV-Ad-ACG2
[0130] SEQ ID NO: 8: a nucleotide sequence of mutant-1F primer
[0131] SEQ ID NO: 9: a nucleotide sequence of mutant-1R primer
[0132] SEQ ID NO: 10: a nucleotide sequence of mutant-2F primer
[0133] SEQ ID NO: 11: a nucleotide sequence of mutant-2R primer
[0134] SEQ ID NO: 12: a nucleotide sequence of pAAV-CB-EGFP
[0135] SEQ ID NO: 13: a nucleotide sequence of ITR-F primer
[0136] SEQ ID NO: 14: a nucleotide sequence of ITR-R primer
[0137] SEQ ID NO: 15: a nucleotide sequence of hamster-actin-F primer
[0138] SEQ ID NO: 16: a nucleotide sequence of hamster-actin-R primer
[0139] SEQ ID NO: 17: a nucleotide sequence of EGFP-F primer
[0140] SEQ ID NO: 18: a nucleotide sequence of EGFP-R primer
Sequence CWU
1
1
1812208DNAadeno-associated virus 2 1atggctgccg atggttatct tccagattgg
ctcgaggaca ctctctctga aggaataaga 60cagtggtgga agctcaaacc tggcccacca
ccaccaaagc ccgcagagcg gcataaggac 120gacagcaggg gtcttgtgct tcctgggtac
aagtacctcg gacccttcaa cggactcgac 180aagggagagc cggtcaacga ggcagacgcc
gcggccctcg agcacgacaa agcctacgac 240cggcagctcg acagcggaga caacccgtac
ctcaagtaca accacgccga cgcggagttt 300caggagcgcc ttaaagaaga tacgtctttt
gggggcaacc tcggacgagc agtcttccag 360gcgaaaaaga gggttcttga acctctgggc
ctggttgagg aacctgttaa gacggctccg 420ggaaaaaaga ggccggtaga gcactctcct
gtggagccag actcctcctc gggaaccgga 480aaggcgggcc agcagcctgc aagaaaaaga
ttgaattttg gtcagactgg agacgcagac 540tcagtacctg acccccagcc tctcggacag
ccaccagcag ccccctctgg tctgggaact 600aatacgatgg ctacaggcag tggcgcacca
atggcagaca ataacgaggg cgccgacgga 660gtgggtaatt cctcgggaaa ttggcattgc
gattccacat ggatgggcga cagagtcatc 720accaccagca cccgaacctg ggccctgccc
acctacaaca accacctcta caaacaaatt 780tccagccaat caggagcctc gaacgacaat
cactactttg gctacagcac cccttggggg 840tattttgact tcaacagatt ccactgccac
ttttcaccac gtgactggca aagactcatc 900aacaacaact ggggattccg acccaagaga
ctcaacttca agctctttaa cattcaagtc 960aaagaggtca cgcagaatga cggtacgacg
acgattgcca ataaccttac cagcacggtt 1020caggtgttta ctgactcgga gtaccagctc
ccgtacgtcc tcggctcggc gcatcaagga 1080tgcctcccgc cgttcccagc agacgtcttc
atggtgccac agtatggata cctcaccctg 1140aacaacggga gtcaggcagt aggacgctct
tcattttact gcctggagta ctttccttct 1200cagatgctgc gtaccggaaa caactttacc
ttcagctaca cttttgagga cgttcctttc 1260cacagcagct acgctcacag ccagagtctg
gaccgtctca tgaatcctct catcgaccag 1320tacctgtatt acttgagcag aacaaacact
ccaagtggaa ccaccacgca gtcaaggctt 1380cagttttctc aggccggagc gagtgacatt
cgggaccagt ctaggaactg gcttcctgga 1440ccctgttacc gccagcagcg agtatcaaag
acatctgcgg ataacaacaa cagtgaatac 1500tcgtggactg gagctaccaa gtaccacctc
aatggcagag actctctggt gaatccgggc 1560ccggccatgg caagccacaa ggacgatgaa
gaaaagtttt ttcctcagag cggggttctc 1620atctttggga agcaaggctc agagaaaaca
aatgtggaca ttgaaaaggt catgattaca 1680gacgaagagg aaatcaggac aaccaatccc
gtggctacgg agcagtatgg ttctgtatct 1740accaacctcc agagaggcaa cagacaagca
gctaccgcag atgtcaacac acaaggcgtt 1800cttccaggca tggtctggca ggacagagat
gtgtaccttc aggggcccat ctgggcaaag 1860attccacaca cggacggaca ttttcacccc
tctcccctca tgggtggatt cggacttaaa 1920caccctcctc cacagattct catcaagaac
accccggtac ctgcgaatcc ttcgaccacc 1980ttcagtgcgg caaagtttgc ttccttcatc
acacagtact ccacgggaca ggtcagcgtg 2040gagatcgagt gggagctgca gaaggaaaac
agcaaacgct ggaatcccga aattcagtac 2100acttccaact acaacaagtc tgttaatgtg
gactttactg tggacactaa tggcgtgtat 2160tcagagcctc gccccattgg caccagatac
ctgactcgta atctgtaa 22082735PRTadeno-associated virus 2
2Met Ala Ala Asp Gly Tyr Leu Pro Asp Trp Leu Glu Asp Thr Leu Ser1
5 10 15Glu Gly Ile Arg Gln Trp
Trp Lys Leu Lys Pro Gly Pro Pro Pro Pro 20 25
30Lys Pro Ala Glu Arg His Lys Asp Asp Ser Arg Gly Leu
Val Leu Pro 35 40 45Gly Tyr Lys
Tyr Leu Gly Pro Phe Asn Gly Leu Asp Lys Gly Glu Pro 50
55 60Val Asn Glu Ala Asp Ala Ala Ala Leu Glu His Asp
Lys Ala Tyr Asp65 70 75
80Arg Gln Leu Asp Ser Gly Asp Asn Pro Tyr Leu Lys Tyr Asn His Ala
85 90 95Asp Ala Glu Phe Gln Glu
Arg Leu Lys Glu Asp Thr Ser Phe Gly Gly 100
105 110Asn Leu Gly Arg Ala Val Phe Gln Ala Lys Lys Arg
Val Leu Glu Pro 115 120 125Leu Gly
Leu Val Glu Glu Pro Val Lys Thr Ala Pro Gly Lys Lys Arg 130
135 140Pro Val Glu His Ser Pro Val Glu Pro Asp Ser
Ser Ser Gly Thr Gly145 150 155
160Lys Ala Gly Gln Gln Pro Ala Arg Lys Arg Leu Asn Phe Gly Gln Thr
165 170 175Gly Asp Ala Asp
Ser Val Pro Asp Pro Gln Pro Leu Gly Gln Pro Pro 180
185 190Ala Ala Pro Ser Gly Leu Gly Thr Asn Thr Met
Ala Thr Gly Ser Gly 195 200 205Ala
Pro Met Ala Asp Asn Asn Glu Gly Ala Asp Gly Val Gly Asn Ser 210
215 220Ser Gly Asn Trp His Cys Asp Ser Thr Trp
Met Gly Asp Arg Val Ile225 230 235
240Thr Thr Ser Thr Arg Thr Trp Ala Leu Pro Thr Tyr Asn Asn His
Leu 245 250 255Tyr Lys Gln
Ile Ser Ser Gln Ser Gly Ala Ser Asn Asp Asn His Tyr 260
265 270Phe Gly Tyr Ser Thr Pro Trp Gly Tyr Phe
Asp Phe Asn Arg Phe His 275 280
285Cys His Phe Ser Pro Arg Asp Trp Gln Arg Leu Ile Asn Asn Asn Trp 290
295 300Gly Phe Arg Pro Lys Arg Leu Asn
Phe Lys Leu Phe Asn Ile Gln Val305 310
315 320Lys Glu Val Thr Gln Asn Asp Gly Thr Thr Thr Ile
Ala Asn Asn Leu 325 330
335Thr Ser Thr Val Gln Val Phe Thr Asp Ser Glu Tyr Gln Leu Pro Tyr
340 345 350Val Leu Gly Ser Ala His
Gln Gly Cys Leu Pro Pro Phe Pro Ala Asp 355 360
365Val Phe Met Val Pro Gln Tyr Gly Tyr Leu Thr Leu Asn Asn
Gly Ser 370 375 380Gln Ala Val Gly Arg
Ser Ser Phe Tyr Cys Leu Glu Tyr Phe Pro Ser385 390
395 400Gln Met Leu Arg Thr Gly Asn Asn Phe Thr
Phe Ser Tyr Thr Phe Glu 405 410
415Asp Val Pro Phe His Ser Ser Tyr Ala His Ser Gln Ser Leu Asp Arg
420 425 430Leu Met Asn Pro Leu
Ile Asp Gln Tyr Leu Tyr Tyr Leu Ser Arg Thr 435
440 445Asn Thr Pro Ser Gly Thr Thr Thr Gln Ser Arg Leu
Gln Phe Ser Gln 450 455 460Ala Gly Ala
Ser Asp Ile Arg Asp Gln Ser Arg Asn Trp Leu Pro Gly465
470 475 480Pro Cys Tyr Arg Gln Gln Arg
Val Ser Lys Thr Ser Ala Asp Asn Asn 485
490 495Asn Ser Glu Tyr Ser Trp Thr Gly Ala Thr Lys Tyr
His Leu Asn Gly 500 505 510Arg
Asp Ser Leu Val Asn Pro Gly Pro Ala Met Ala Ser His Lys Asp 515
520 525Asp Glu Glu Lys Phe Phe Pro Gln Ser
Gly Val Leu Ile Phe Gly Lys 530 535
540Gln Gly Ser Glu Lys Thr Asn Val Asp Ile Glu Lys Val Met Ile Thr545
550 555 560Asp Glu Glu Glu
Ile Arg Thr Thr Asn Pro Val Ala Thr Glu Gln Tyr 565
570 575Gly Ser Val Ser Thr Asn Leu Gln Arg Gly
Asn Arg Gln Ala Ala Thr 580 585
590Ala Asp Val Asn Thr Gln Gly Val Leu Pro Gly Met Val Trp Gln Asp
595 600 605Arg Asp Val Tyr Leu Gln Gly
Pro Ile Trp Ala Lys Ile Pro His Thr 610 615
620Asp Gly His Phe His Pro Ser Pro Leu Met Gly Gly Phe Gly Leu
Lys625 630 635 640His Pro
Pro Pro Gln Ile Leu Ile Lys Asn Thr Pro Val Pro Ala Asn
645 650 655Pro Ser Thr Thr Phe Ser Ala
Ala Lys Phe Ala Ser Phe Ile Thr Gln 660 665
670Tyr Ser Thr Gly Gln Val Ser Val Glu Ile Glu Trp Glu Leu
Gln Lys 675 680 685Glu Asn Ser Lys
Arg Trp Asn Pro Glu Ile Gln Tyr Thr Ser Asn Tyr 690
695 700Asn Lys Ser Val Asn Val Asp Phe Thr Val Asp Thr
Asn Gly Val Tyr705 710 715
720Ser Glu Pro Arg Pro Ile Gly Thr Arg Tyr Leu Thr Arg Asn Leu
725 730 73532208DNAArtificial
Sequencenucleic acid sequence coding AAV2 VP1(A68V) 3atggctgccg
atggttatct tccagattgg ctcgaggaca ctctctctga aggaataaga 60cagtggtgga
agctcaaacc tggcccacca ccaccaaagc ccgcagagcg gcataaggac 120gacagcaggg
gtcttgtgct tcctgggtac aagtacctcg gacccttcaa cggactcgac 180aagggagagc
cggtcaacga ggtagacgcc gcggccctcg agcacgacaa agcctacgac 240cggcagctcg
acagcggaga caacccgtac ctcaagtaca accacgccga cgcggagttt 300caggagcgcc
ttaaagaaga tacgtctttt gggggcaacc tcggacgagc agtcttccag 360gcgaaaaaga
gggttcttga acctctgggc ctggttgagg aacctgttaa gacggctccg 420ggaaaaaaga
ggccggtaga gcactctcct gtggagccag actcctcctc gggaaccgga 480aaggcgggcc
agcagcctgc aagaaaaaga ttgaattttg gtcagactgg agacgcagac 540tcagtacctg
acccccagcc tctcggacag ccaccagcag ccccctctgg tctgggaact 600aatacgatgg
ctacaggcag tggcgcacca atggcagaca ataacgaggg cgccgacgga 660gtgggtaatt
cctcgggaaa ttggcattgc gattccacat ggatgggcga cagagtcatc 720accaccagca
cccgaacctg ggccctgccc acctacaaca accacctcta caaacaaatt 780tccagccaat
caggagcctc gaacgacaat cactactttg gctacagcac cccttggggg 840tattttgact
tcaacagatt ccactgccac ttttcaccac gtgactggca aagactcatc 900aacaacaact
ggggattccg acccaagaga ctcaacttca agctctttaa cattcaagtc 960aaagaggtca
cgcagaatga cggtacgacg acgattgcca ataaccttac cagcacggtt 1020caggtgttta
ctgactcgga gtaccagctc ccgtacgtcc tcggctcggc gcatcaagga 1080tgcctcccgc
cgttcccagc agacgtcttc atggtgccac agtatggata cctcaccctg 1140aacaacggga
gtcaggcagt aggacgctct tcattttact gcctggagta ctttccttct 1200cagatgctgc
gtaccggaaa caactttacc ttcagctaca cttttgagga cgttcctttc 1260cacagcagct
acgctcacag ccagagtctg gaccgtctca tgaatcctct catcgaccag 1320tacctgtatt
acttgagcag aacaaacact ccaagtggaa ccaccacgca gtcaaggctt 1380cagttttctc
aggccggagc gagtgacatt cgggaccagt ctaggaactg gcttcctgga 1440ccctgttacc
gccagcagcg agtatcaaag acatctgcgg ataacaacaa cagtgaatac 1500tcgtggactg
gagctaccaa gtaccacctc aatggcagag actctctggt gaatccgggc 1560ccggccatgg
caagccacaa ggacgatgaa gaaaagtttt ttcctcagag cggggttctc 1620atctttggga
agcaaggctc agagaaaaca aatgtggaca ttgaaaaggt catgattaca 1680gacgaagagg
aaatcaggac aaccaatccc gtggctacgg agcagtatgg ttctgtatct 1740accaacctcc
agagaggcaa cagacaagca gctaccgcag atgtcaacac acaaggcgtt 1800cttccaggca
tggtctggca ggacagagat gtgtaccttc aggggcccat ctgggcaaag 1860attccacaca
cggacggaca ttttcacccc tctcccctca tgggtggatt cggacttaaa 1920caccctcctc
cacagattct catcaagaac accccggtac ctgcgaatcc ttcgaccacc 1980ttcagtgcgg
caaagtttgc ttccttcatc acacagtact ccacgggaca ggtcagcgtg 2040gagatcgagt
gggagctgca gaaggaaaac agcaaacgct ggaatcccga aattcagtac 2100acttccaact
acaacaagtc tgttaatgtg gactttactg tggacactaa tggcgtgtat 2160tcagagcctc
gccccattgg caccagatac ctgactcgta atctgtaa
22084735PRTArtificial Sequenceamino acid sequence of AAV2 VP1(A68V) 4Met
Ala Ala Asp Gly Tyr Leu Pro Asp Trp Leu Glu Asp Thr Leu Ser1
5 10 15Glu Gly Ile Arg Gln Trp Trp
Lys Leu Lys Pro Gly Pro Pro Pro Pro 20 25
30Lys Pro Ala Glu Arg His Lys Asp Asp Ser Arg Gly Leu Val
Leu Pro 35 40 45Gly Tyr Lys Tyr
Leu Gly Pro Phe Asn Gly Leu Asp Lys Gly Glu Pro 50 55
60Val Asn Glu Val Asp Ala Ala Ala Leu Glu His Asp Lys
Ala Tyr Asp65 70 75
80Arg Gln Leu Asp Ser Gly Asp Asn Pro Tyr Leu Lys Tyr Asn His Ala
85 90 95Asp Ala Glu Phe Gln Glu
Arg Leu Lys Glu Asp Thr Ser Phe Gly Gly 100
105 110Asn Leu Gly Arg Ala Val Phe Gln Ala Lys Lys Arg
Val Leu Glu Pro 115 120 125Leu Gly
Leu Val Glu Glu Pro Val Lys Thr Ala Pro Gly Lys Lys Arg 130
135 140Pro Val Glu His Ser Pro Val Glu Pro Asp Ser
Ser Ser Gly Thr Gly145 150 155
160Lys Ala Gly Gln Gln Pro Ala Arg Lys Arg Leu Asn Phe Gly Gln Thr
165 170 175Gly Asp Ala Asp
Ser Val Pro Asp Pro Gln Pro Leu Gly Gln Pro Pro 180
185 190Ala Ala Pro Ser Gly Leu Gly Thr Asn Thr Met
Ala Thr Gly Ser Gly 195 200 205Ala
Pro Met Ala Asp Asn Asn Glu Gly Ala Asp Gly Val Gly Asn Ser 210
215 220Ser Gly Asn Trp His Cys Asp Ser Thr Trp
Met Gly Asp Arg Val Ile225 230 235
240Thr Thr Ser Thr Arg Thr Trp Ala Leu Pro Thr Tyr Asn Asn His
Leu 245 250 255Tyr Lys Gln
Ile Ser Ser Gln Ser Gly Ala Ser Asn Asp Asn His Tyr 260
265 270Phe Gly Tyr Ser Thr Pro Trp Gly Tyr Phe
Asp Phe Asn Arg Phe His 275 280
285Cys His Phe Ser Pro Arg Asp Trp Gln Arg Leu Ile Asn Asn Asn Trp 290
295 300Gly Phe Arg Pro Lys Arg Leu Asn
Phe Lys Leu Phe Asn Ile Gln Val305 310
315 320Lys Glu Val Thr Gln Asn Asp Gly Thr Thr Thr Ile
Ala Asn Asn Leu 325 330
335Thr Ser Thr Val Gln Val Phe Thr Asp Ser Glu Tyr Gln Leu Pro Tyr
340 345 350Val Leu Gly Ser Ala His
Gln Gly Cys Leu Pro Pro Phe Pro Ala Asp 355 360
365Val Phe Met Val Pro Gln Tyr Gly Tyr Leu Thr Leu Asn Asn
Gly Ser 370 375 380Gln Ala Val Gly Arg
Ser Ser Phe Tyr Cys Leu Glu Tyr Phe Pro Ser385 390
395 400Gln Met Leu Arg Thr Gly Asn Asn Phe Thr
Phe Ser Tyr Thr Phe Glu 405 410
415Asp Val Pro Phe His Ser Ser Tyr Ala His Ser Gln Ser Leu Asp Arg
420 425 430Leu Met Asn Pro Leu
Ile Asp Gln Tyr Leu Tyr Tyr Leu Ser Arg Thr 435
440 445Asn Thr Pro Ser Gly Thr Thr Thr Gln Ser Arg Leu
Gln Phe Ser Gln 450 455 460Ala Gly Ala
Ser Asp Ile Arg Asp Gln Ser Arg Asn Trp Leu Pro Gly465
470 475 480Pro Cys Tyr Arg Gln Gln Arg
Val Ser Lys Thr Ser Ala Asp Asn Asn 485
490 495Asn Ser Glu Tyr Ser Trp Thr Gly Ala Thr Lys Tyr
His Leu Asn Gly 500 505 510Arg
Asp Ser Leu Val Asn Pro Gly Pro Ala Met Ala Ser His Lys Asp 515
520 525Asp Glu Glu Lys Phe Phe Pro Gln Ser
Gly Val Leu Ile Phe Gly Lys 530 535
540Gln Gly Ser Glu Lys Thr Asn Val Asp Ile Glu Lys Val Met Ile Thr545
550 555 560Asp Glu Glu Glu
Ile Arg Thr Thr Asn Pro Val Ala Thr Glu Gln Tyr 565
570 575Gly Ser Val Ser Thr Asn Leu Gln Arg Gly
Asn Arg Gln Ala Ala Thr 580 585
590Ala Asp Val Asn Thr Gln Gly Val Leu Pro Gly Met Val Trp Gln Asp
595 600 605Arg Asp Val Tyr Leu Gln Gly
Pro Ile Trp Ala Lys Ile Pro His Thr 610 615
620Asp Gly His Phe His Pro Ser Pro Leu Met Gly Gly Phe Gly Leu
Lys625 630 635 640His Pro
Pro Pro Gln Ile Leu Ile Lys Asn Thr Pro Val Pro Ala Asn
645 650 655Pro Ser Thr Thr Phe Ser Ala
Ala Lys Phe Ala Ser Phe Ile Thr Gln 660 665
670Tyr Ser Thr Gly Gln Val Ser Val Glu Ile Glu Trp Glu Leu
Gln Lys 675 680 685Glu Asn Ser Lys
Arg Trp Asn Pro Glu Ile Gln Tyr Thr Ser Asn Tyr 690
695 700Asn Lys Ser Val Asn Val Asp Phe Thr Val Asp Thr
Asn Gly Val Tyr705 710 715
720Ser Glu Pro Arg Pro Ile Gly Thr Arg Tyr Leu Thr Arg Asn Leu
725 730 73552208DNAArtificial
Sequencenucleic acid sequence coding AAV2 VP1(A3T/Y6H/ A68V)
5atggctaccg atggtcatct tccagattgg ctcgaggaca ctctctctga aggaataaga
60cagtggtgga agctcaaacc tggcccacca ccaccaaagc ccgcagagcg gcataaggac
120gacagcaggg gtcttgtgct tcctgggtac aagtacctcg gacccttcaa cggactcgac
180aagggagagc cggtcaacga ggtagacgcc gcggccctcg agcacgacaa agcctacgac
240cggcagctcg acagcggaga caacccgtac ctcaagtaca accacgccga cgcggagttt
300caggagcgcc ttaaagaaga tacgtctttt gggggcaacc tcggacgagc agtcttccag
360gcgaaaaaga gggttcttga acctctgggc ctggttgagg aacctgttaa gacggctccg
420ggaaaaaaga ggccggtaga gcactctcct gtggagccag actcctcctc gggaaccgga
480aaggcgggcc agcagcctgc aagaaaaaga ttgaattttg gtcagactgg agacgcagac
540tcagtacctg acccccagcc tctcggacag ccaccagcag ccccctctgg tctgggaact
600aatacgatgg ctacaggcag tggcgcacca atggcagaca ataacgaggg cgccgacgga
660gtgggtaatt cctcgggaaa ttggcattgc gattccacat ggatgggcga cagagtcatc
720accaccagca cccgaacctg ggccctgccc acctacaaca accacctcta caaacaaatt
780tccagccaat caggagcctc gaacgacaat cactactttg gctacagcac cccttggggg
840tattttgact tcaacagatt ccactgccac ttttcaccac gtgactggca aagactcatc
900aacaacaact ggggattccg acccaagaga ctcaacttca agctctttaa cattcaagtc
960aaagaggtca cgcagaatga cggtacgacg acgattgcca ataaccttac cagcacggtt
1020caggtgttta ctgactcgga gtaccagctc ccgtacgtcc tcggctcggc gcatcaagga
1080tgcctcccgc cgttcccagc agacgtcttc atggtgccac agtatggata cctcaccctg
1140aacaacggga gtcaggcagt aggacgctct tcattttact gcctggagta ctttccttct
1200cagatgctgc gtaccggaaa caactttacc ttcagctaca cttttgagga cgttcctttc
1260cacagcagct acgctcacag ccagagtctg gaccgtctca tgaatcctct catcgaccag
1320tacctgtatt acttgagcag aacaaacact ccaagtggaa ccaccacgca gtcaaggctt
1380cagttttctc aggccggagc gagtgacatt cgggaccagt ctaggaactg gcttcctgga
1440ccctgttacc gccagcagcg agtatcaaag acatctgcgg ataacaacaa cagtgaatac
1500tcgtggactg gagctaccaa gtaccacctc aatggcagag actctctggt gaatccgggc
1560ccggccatgg caagccacaa ggacgatgaa gaaaagtttt ttcctcagag cggggttctc
1620atctttggga agcaaggctc agagaaaaca aatgtggaca ttgaaaaggt catgattaca
1680gacgaagagg aaatcaggac aaccaatccc gtggctacgg agcagtatgg ttctgtatct
1740accaacctcc agagaggcaa cagacaagca gctaccgcag atgtcaacac acaaggcgtt
1800cttccaggca tggtctggca ggacagagat gtgtaccttc aggggcccat ctgggcaaag
1860attccacaca cggacggaca ttttcacccc tctcccctca tgggtggatt cggacttaaa
1920caccctcctc cacagattct catcaagaac accccggtac ctgcgaatcc ttcgaccacc
1980ttcagtgcgg caaagtttgc ttccttcatc acacagtact ccacgggaca ggtcagcgtg
2040gagatcgagt gggagctgca gaaggaaaac agcaaacgct ggaatcccga aattcagtac
2100acttccaact acaacaagtc tgttaatgtg gactttactg tggacactaa tggcgtgtat
2160tcagagcctc gccccattgg caccagatac ctgactcgta atctgtaa
22086735PRTArtificial Sequenceamino acid sequence of AAV2
VP1(A3T/Y6H/A68V) 6Met Ala Thr Asp Gly His Leu Pro Asp Trp Leu Glu Asp
Thr Leu Ser1 5 10 15Glu
Gly Ile Arg Gln Trp Trp Lys Leu Lys Pro Gly Pro Pro Pro Pro 20
25 30Lys Pro Ala Glu Arg His Lys Asp
Asp Ser Arg Gly Leu Val Leu Pro 35 40
45Gly Tyr Lys Tyr Leu Gly Pro Phe Asn Gly Leu Asp Lys Gly Glu Pro
50 55 60Val Asn Glu Val Asp Ala Ala Ala
Leu Glu His Asp Lys Ala Tyr Asp65 70 75
80Arg Gln Leu Asp Ser Gly Asp Asn Pro Tyr Leu Lys Tyr
Asn His Ala 85 90 95Asp
Ala Glu Phe Gln Glu Arg Leu Lys Glu Asp Thr Ser Phe Gly Gly
100 105 110Asn Leu Gly Arg Ala Val Phe
Gln Ala Lys Lys Arg Val Leu Glu Pro 115 120
125Leu Gly Leu Val Glu Glu Pro Val Lys Thr Ala Pro Gly Lys Lys
Arg 130 135 140Pro Val Glu His Ser Pro
Val Glu Pro Asp Ser Ser Ser Gly Thr Gly145 150
155 160Lys Ala Gly Gln Gln Pro Ala Arg Lys Arg Leu
Asn Phe Gly Gln Thr 165 170
175Gly Asp Ala Asp Ser Val Pro Asp Pro Gln Pro Leu Gly Gln Pro Pro
180 185 190Ala Ala Pro Ser Gly Leu
Gly Thr Asn Thr Met Ala Thr Gly Ser Gly 195 200
205Ala Pro Met Ala Asp Asn Asn Glu Gly Ala Asp Gly Val Gly
Asn Ser 210 215 220Ser Gly Asn Trp His
Cys Asp Ser Thr Trp Met Gly Asp Arg Val Ile225 230
235 240Thr Thr Ser Thr Arg Thr Trp Ala Leu Pro
Thr Tyr Asn Asn His Leu 245 250
255Tyr Lys Gln Ile Ser Ser Gln Ser Gly Ala Ser Asn Asp Asn His Tyr
260 265 270Phe Gly Tyr Ser Thr
Pro Trp Gly Tyr Phe Asp Phe Asn Arg Phe His 275
280 285Cys His Phe Ser Pro Arg Asp Trp Gln Arg Leu Ile
Asn Asn Asn Trp 290 295 300Gly Phe Arg
Pro Lys Arg Leu Asn Phe Lys Leu Phe Asn Ile Gln Val305
310 315 320Lys Glu Val Thr Gln Asn Asp
Gly Thr Thr Thr Ile Ala Asn Asn Leu 325
330 335Thr Ser Thr Val Gln Val Phe Thr Asp Ser Glu Tyr
Gln Leu Pro Tyr 340 345 350Val
Leu Gly Ser Ala His Gln Gly Cys Leu Pro Pro Phe Pro Ala Asp 355
360 365Val Phe Met Val Pro Gln Tyr Gly Tyr
Leu Thr Leu Asn Asn Gly Ser 370 375
380Gln Ala Val Gly Arg Ser Ser Phe Tyr Cys Leu Glu Tyr Phe Pro Ser385
390 395 400Gln Met Leu Arg
Thr Gly Asn Asn Phe Thr Phe Ser Tyr Thr Phe Glu 405
410 415Asp Val Pro Phe His Ser Ser Tyr Ala His
Ser Gln Ser Leu Asp Arg 420 425
430Leu Met Asn Pro Leu Ile Asp Gln Tyr Leu Tyr Tyr Leu Ser Arg Thr
435 440 445Asn Thr Pro Ser Gly Thr Thr
Thr Gln Ser Arg Leu Gln Phe Ser Gln 450 455
460Ala Gly Ala Ser Asp Ile Arg Asp Gln Ser Arg Asn Trp Leu Pro
Gly465 470 475 480Pro Cys
Tyr Arg Gln Gln Arg Val Ser Lys Thr Ser Ala Asp Asn Asn
485 490 495Asn Ser Glu Tyr Ser Trp Thr
Gly Ala Thr Lys Tyr His Leu Asn Gly 500 505
510Arg Asp Ser Leu Val Asn Pro Gly Pro Ala Met Ala Ser His
Lys Asp 515 520 525Asp Glu Glu Lys
Phe Phe Pro Gln Ser Gly Val Leu Ile Phe Gly Lys 530
535 540Gln Gly Ser Glu Lys Thr Asn Val Asp Ile Glu Lys
Val Met Ile Thr545 550 555
560Asp Glu Glu Glu Ile Arg Thr Thr Asn Pro Val Ala Thr Glu Gln Tyr
565 570 575Gly Ser Val Ser Thr
Asn Leu Gln Arg Gly Asn Arg Gln Ala Ala Thr 580
585 590Ala Asp Val Asn Thr Gln Gly Val Leu Pro Gly Met
Val Trp Gln Asp 595 600 605Arg Asp
Val Tyr Leu Gln Gly Pro Ile Trp Ala Lys Ile Pro His Thr 610
615 620Asp Gly His Phe His Pro Ser Pro Leu Met Gly
Gly Phe Gly Leu Lys625 630 635
640His Pro Pro Pro Gln Ile Leu Ile Lys Asn Thr Pro Val Pro Ala Asn
645 650 655Pro Ser Thr Thr
Phe Ser Ala Ala Lys Phe Ala Ser Phe Ile Thr Gln 660
665 670Tyr Ser Thr Gly Gln Val Ser Val Glu Ile Glu
Trp Glu Leu Gln Lys 675 680 685Glu
Asn Ser Lys Arg Trp Asn Pro Glu Ile Gln Tyr Thr Ser Asn Tyr 690
695 700Asn Lys Ser Val Asn Val Asp Phe Thr Val
Asp Thr Asn Gly Val Tyr705 710 715
720Ser Glu Pro Arg Pro Ile Gly Thr Arg Tyr Leu Thr Arg Asn Leu
725 730
73578177DNAArtificial SequencepAAV-Ad-ACG2 7aattcccatc atcaataata
taccttattt tggattgaag ccaatatgat aatgaggggg 60tggagtttgt gacgtggcgc
ggggcgtggg aacggggcgg gtgacgtagt agtctctaga 120ggtcctgtat tagaggtcac
gtgagtgttt tgcgacattt tgcgacacca tgtggtcacg 180ctgggtattt aagcccgagt
gagcacgcag ggtctccatt ttgaagcggg aggtttgaac 240gcgcagccac cacgccgggg
ttttacgaga ttgtgattaa ggtccccagc gaccttgacg 300ggcatctgcc cggcatttct
gacagctttg tgaactgggt ggccgagaag gaatgggagt 360tgccgccaga ttctgacatg
gatctgaatc tgattgagca ggcacccctg accgtggccg 420agaagctgca gcgcgacttt
ctgacggaat ggcgccgtgt gagtaaggcc ccggaggccc 480ttttctttgt gcaatttgag
aagggagaga gctacttcca catgcacgtg ctcgtggaaa 540ccaccggggt gaaatccatg
gttttgggac gtttcctgag tcagattcgc gaaaaactga 600ttcagagaat ttaccgcggg
atcgagccga ctttgccaaa ctggttcgcg gtcacaaaga 660ccagaaatgg cgccggaggc
gggaacaagg tggtggatga gtgctacatc cccaattact 720tgctccccaa aacccagcct
gagctccagt gggcgtggac taatatggaa cagtatttaa 780gcgcctgttt gaatctcacg
gagcgtaaac ggttggtggc gcagcatctg acgcacgtgt 840cgcagacgca ggagcagaac
aaagagaatc agaatcccaa ttctgatgcg ccggtgatca 900gatcaaaaac ttcagccagg
tacatggagc tggtcgggtg gctcgtggac aaggggatta 960cctcggagaa gcagtggatc
caggaggacc aggcctcata catctccttc aatgcggcct 1020ccaactcgcg gtcccaaatc
aaggctgcct tggacaatgc gggaaagatt atgagcctga 1080ctaaaaccgc ccccgactac
ctggtgggcc agcagcccgt ggaggacatt tccagcaatc 1140ggatttataa aattttggaa
ctaaacgggt acgatcccca atatgcggct tccgtctttc 1200tgggatgggc cacgaaaaag
ttcggcaaga ggaacaccat ctggctgttt gggcctgcaa 1260ctaccgggaa gaccaacatc
gcggaggcca tagcccacac tgtgcccttc tacgggtgcg 1320taaactggac caatgagaac
tttcccttca acgactgtgt cgacaagatg gtgatctggt 1380gggaggaggg gaagatgacc
gccaaggtcg tggagtcggc caaagccatt ctcggaggaa 1440gcaaggtgcg cgtggaccag
aaatgcaagt cctcggccca gatagacccg actcccgtga 1500tcgtcacctc caacaccaac
atgtgcgccg tgattgacgg gaactcaacg accttcgaac 1560accagcagcc gttgcaagac
cggatgttca aatttgaact cacccgccgt ctggatcatg 1620actttgggaa ggtcaccaag
caggaagtca aagacttttt ccggtgggca aaggatcacg 1680tggttgaggt ggagcatgaa
ttctacgtca aaaagggtgg agccaagaaa agacccgccc 1740ccagtgacgc agatataagt
gagcccaaac gggtgcgcga gtcagttgcg cagccatcga 1800cgtcagacgc ggaagcttcg
atcaactacg cagacaggta ccaaaacaaa tgttctcgtc 1860acgtgggcat gaatctgatg
ctgtttccct gcagacaatg cgagagaatg aatcagaatt 1920caaatatctg cttcactcac
ggacagaaag actgtttaga gtgctttccc gtgtcagaat 1980ctcaacccgt ttctgtcgtc
aaaaaggcgt atcagaaact gtgctacatt catcatatca 2040tgggaaaggt gccagacgct
tgcactgcct gcgatctggt caatgtggat ttggatgact 2100gcatctttga acaataaatg
atttaaatca ggtatggctg ccgatggtta tcttccagat 2160tggctcgagg acactctctc
tgaaggaata agacagtggt ggaagctcaa acctggccca 2220ccaccaccaa agcccgcaga
gcggcataag gacgacagca ggggtcttgt tcttcctggg 2280tacaagtacc tcggaccctt
caacggactc gacaagggag agccggtcaa cgaggcagac 2340gccgcggccc tcgagcacga
caaagcctac gaccggcagc tcgacagcgg agacaacccg 2400tacctcaagt acaaccacgc
cgacgcggag tttcaggagc gccttaaaga agatacgtct 2460tttgggggca acctcggacg
agcagtcttc caggcgaaaa agagggttct tgaacctctg 2520ggcctggttg aggaacctgt
taagacggct ccgggaaaaa agaggccggt agagcactct 2580cctgtggagc cagactcctc
ctcgggaacc ggaaaggcgg gccagcagcc tgcaagaaaa 2640agattgaatt ttggtcagac
tggagacgca gactcagtac ctgaccccca gcctctcgga 2700cagccaccag cagccccctc
tggtctggga actaatacga tggcaacagg cagtggcgca 2760ccaatggcag acaataacga
gggcgccgac ggggtgggta attcctcggg aaattggcat 2820tgcgattcca catggatggg
cgacagagtc atcaccacca gcacccgaac ctgggccctg 2880cccacctaca acaaccacct
ctacaaacaa atttccagcc aatcaggagc ctcgaacgac 2940aatcactact ttggctacag
caccccttgg gggtattttg acttcaacag attccactgc 3000cacttttcac cacgtgactg
gcaaagactc atcaacaaca actggggatt ccgacccaag 3060agactcaact tcaagctctt
taacattcaa gtcaaagagg tcacgcagaa tgacggtacg 3120acgacgattg ccaataacct
taccagcacg gttcaggtgt ttactgactc ggagtaccag 3180ctcccgtacg tcctcggctc
ggcgcatcaa ggatgcctcc cgccgttccc agcagacgtc 3240ttcatggtgc cacagtatgg
atacctcacc ctgaacaacg ggagtcaggc agtaggacgc 3300tcttcatttt actgcctgga
gtactttcct tctcagatgc tgcgtaccgg aaacaacttt 3360accttcagct acacttttga
ggacgttcct ttccacagca gctacgctca cagccagagt 3420ctggaccgtc tcatgaatcc
tctcatcgac cagtacctgt attacttgag cagaacaaac 3480actccaagtg gaaccaccac
gcagtcaagg cttcagtttt ctcaggccgg agcgagtgac 3540attcgggacc agtctaggaa
ctggcttcct ggaccctgtt accgccagca gcgagtatca 3600aagacatctg cggataacaa
caacagtgaa tactcgtgga ctggagctac caagtaccac 3660ctcaatggca gagactctct
ggtgaatccg ggcccggcca tggcaagcca caaggacgat 3720gaagaaaagt tttttcctca
gagcggggtt ctcatctttg ggaagcaagg ctcagagaaa 3780gcaaatgtgg acattgaaaa
ggtcatgatt acagacgaag aggaaatcag gacaaccaat 3840cccgtggcta cggagcagta
tggttctgta tctaccaacc tccagagagg caacagacaa 3900gcagctaccg cagatgtcaa
cacacaaggc gttcttccag gcatggtctg gcaggacaga 3960gatgtgtacc ttcaggggcc
catctgggca aagattccac acacggacgg acattttcac 4020ccctctcccc tcatgggtgg
attcggactt aaacaccctc ctccacagat tctcatcaag 4080aacaccccgg tacctgcgaa
tccttcgacc accttcagtg cggcaaagtt tgcttccttc 4140atcacacagt actccacggg
acaggtcagc gtggagatcg agtgggagct gcagaaggaa 4200aacagcaaac gctggaatcc
cgaaattcag tacacttcca actacaacaa gtctgttaat 4260gtggacttta ctgtggacac
taatggcgtg tattcagagc ctcgccccat tggcaccaga 4320tacctgactc gtaatctgta
attgcttgtt aatcaataaa ccgtttaatt cgtttcagtt 4380gaactttggt ctctgcgtat
ttctttctta tctagtttcc atgctctaga ctactacgtc 4440acccgccccg ttcccacgcc
ccgcgccacg tcacaaactc caccccctca ttatcatatt 4500ggcttcaatc caaaataagg
tatattattg atgatgcatc gctggcgtaa tagcgaagag 4560gcccgcaccg atcgcccttc
ccaacagttg cgcagcctga atggcgaatg gaattccaga 4620cgattgagcg tcaaaatgta
ggtatttcca tgagcgtttt tcctgttgca atggctggcg 4680gtaatattgt tctggatatt
accagcaagg ccgatagttt gagttcttct actcaggcaa 4740gtgatgttat tactaatcaa
agaagtattg cgacaacggt taatttgcgt gatggacaga 4800ctcttttact cggtggcctc
actgattata aaaacacttc tcaggattct ggcgtaccgt 4860tcctgtctaa aatcccttta
atcggcctcc tgtttagctc ccgctctgat tctaacgagg 4920aaagcacgtt atacgtgctc
gtcaaagcaa ccatagtacg cgccctgtag cggcgcatta 4980agcgcggcgg gtgtggtggt
tacgcgcagc gtgaccgcta cacttgccag cgccctagcg 5040cccgctcctt tcgctttctt
cccttccttt ctcgccacgt tcgccggctt tccccgtcaa 5100gctctaaatc gggggctccc
tttagggttc cgatttagtg ctttacggca cctcgacccc 5160aaaaaacttg attagggtga
tggttcacgt agtgggccat cgccctgata gacggttttt 5220cgccctttga cgttggagtc
cacgttcttt aatagtggac tcttgttcca aactggaaca 5280acactcaacc ctatctcggt
ctattctttt gatttataag ggattttgcc gatttcggcc 5340tattggttaa aaaatgagct
gatttaacaa aaatttaacg cgaattttaa caaaatatta 5400acgtttacaa tttaaatatt
tgcttataca atcttcctgt ttttggggct tttctgatta 5460tcaaccgggg tacatatgat
tgacatgcta gttttacgat taccgttcat cgattctctt 5520gtttgctcca gactctcagg
caatgacctg atagcctttg tagagacctc tcaaaaatag 5580ctaccctctc cggcatgaat
ttatcagcta gaacggttga atatcatatt gatggtgatt 5640tgactgtctc cggcctttct
cacccgtttg aatctttacc tacacattac tcaggcattg 5700catttaaaat atatgagggt
tctaaaaatt tttatccttg cgttgaaata aaggcttctc 5760ccgcaaaagt attacagggt
cataatgttt ttggtacaac cgatttagct ttatgctctg 5820aggctttatt gcttaatttt
gctaattctt tgccttgcct gtatgattta ttggatgttg 5880gaattcctga tgcggtattt
tctccttacg catctgtgcg gtatttcaca ccgcatatgg 5940tgcactctca gtacaatctg
ctctgatgcc gcatagttaa gccagccccg acacccgcca 6000acacccgctg acgcgccctg
acgggcttgt ctgctcccgg catccgctta cagacaagct 6060gtgaccgtct ccgggagctg
catgtgtcag aggttttcac cgtcatcacc gaaacgcgcg 6120agacgaaagg gcctcgtgat
acgcctattt ttataggtta atgtcatgat aataatggtt 6180tcttagacgt caggtggcac
ttttcgggga aatgtgcgcg gaacccctat ttgtttattt 6240ttctaaatac attcaaatat
gtatccgctc atgagacaat aaccctgata aatgcttcaa 6300taatattgaa aaaggaagag
tatgagtatt caacatttcc gtgtcgccct tattcccttt 6360tttgcggcat tttgccttcc
tgtttttgct cacccagaaa cgctggtgaa agtaaaagat 6420gctgaagatc agttgggtgc
acgagtgggt tacatcgaac tggatctcaa cagcggtaag 6480atccttgaga gttttcgccc
cgaagaacgt tttccaatga tgagcacttt taaagttctg 6540ctatgtggcg cggtattatc
ccgtattgac gccgggcaag agcaactcgg tcgccgcata 6600cactattctc agaatgactt
ggttgagtac tcaccagtca cagaaaagca tcttacggat 6660ggcatgacag taagagaatt
atgcagtgct gccataacca tgagtgataa cactgcggcc 6720aacttacttc tgacaacgat
cggaggaccg aaggagctaa ccgctttttt gcacaacatg 6780ggggatcatg taactcgcct
tgatcgttgg gaaccggagc tgaatgaagc cataccaaac 6840gacgagcgtg acaccacgat
gcctgtagca atggcaacaa cgttgcgcaa actattaact 6900ggcgaactac ttactctagc
ttcccggcaa caattaatag actggatgga ggcggataaa 6960gttgcaggac cacttctgcg
ctcggccctt ccggctggct ggtttattgc tgataaatct 7020ggagccggtg agcgtgggtc
tcgcggtatc attgcagcac tggggccaga tggtaagccc 7080tcccgtatcg tagttatcta
cacgacgggg agtcaggcaa ctatggatga acgaaataga 7140cagatcgctg agataggtgc
ctcactgatt aagcattggt aactgtcaga ccaagtttac 7200tcatatatac tttagattga
tttaaaactt catttttaat ttaaaaggat ctaggtgaag 7260atcctttttg ataatctcat
gaccaaaatc ccttaacgtg agttttcgtt ccactgagcg 7320tcagaccccg tagaaaagat
caaaggatct tcttgagatc ctttttttct gcgcgtaatc 7380tgctgcttgc aaacaaaaaa
accaccgcta ccagcggtgg tttgtttgcc ggatcaagag 7440ctaccaactc tttttccgaa
ggtaactggc ttcagcagag cgcagatacc aaatactgtc 7500cttctagtgt agccgtagtt
aggccaccac ttcaagaact ctgtagcacc gcctacatac 7560ctcgctctgc taatcctgtt
accagtggct gctgccagtg gcgataagtc gtgtcttacc 7620gggttggact caagacgata
gttaccggat aaggcgcagc ggtcgggctg aacggggggt 7680tcgtgcacac agcccagctt
ggagcgaacg acctacaccg aactgagata cctacagcgt 7740gagctatgag aaagcgccac
gcttcccgaa gggagaaagg cggacaggta tccggtaagc 7800ggcagggtcg gaacaggaga
gcgcacgagg gagcttccag ggggaaacgc ctggtatctt 7860tatagtcctg tcgggtttcg
ccacctctga cttgagcgtc gatttttgtg atgctcgtca 7920ggggggcgga gcctatggaa
aaacgccagc aacgcggcct ttttacggtt cctggccttt 7980tgctggcctt ttgctcacat
gttctttcct gcgttatccc ctgattctgt ggataaccgt 8040attaccgcct ttgagtgagc
tgataccgct cgccgcagcc gaacgaccga gcgcagcgag 8100tcagtgagcg aggaagcgga
agagcgccca atacgcaaac cgcctctccc cgcgcgttgg 8160ccgattcatt aatgcag
8177833DNAArtificial
Sequencemutant-1F primer 8atcaggtatg gctaccgatg gtcatcttcc aga
33933DNAArtificial Sequencemutant-1R primer
9tctggaagat gaccatcggt agccatacct gat
331033DNAArtificial Sequencemutant-2F primer 10agccggtcaa cgaggtagac
gccgcggccc tcg 331133DNAArtificial
Sequencemutant-2R primer 11cgagggccgc ggcgtctacc tcgttgaccg gct
33125770DNAArtificial SequencepAAV-CB-EGFP
12cagcagctgg cgtaatagcg aagaggcccg caccgatcgc ccttcccaac agttgcgcag
60cctgaatggc gaatggaatt ccagacgatt gagcgtcaaa atgtaggtat ttccatgagc
120gtttttcctg ttgcaatggc tggcggtaat attgttctgg atattaccag caaggccgat
180agtttgagtt cttctactca ggcaagtgat gttattacta atcaaagaag tattgcgaca
240acggttaatt tgcgtgatgg acagactctt ttactcggtg gcctcactga ttataaaaac
300acttctcagg attctggcgt accgttcctg tctaaaatcc ctttaatcgg cctcctgttt
360agctcccgct ctgattctaa cgaggaaagc acgttatacg tgctcgtcaa agcaaccata
420gtacgcgccc tgtagcggcg cattaagcgc ggcgggtgtg gtggttacgc gcagcgtgac
480cgctacactt gccagcgccc tagcgcccgc tcctttcgct ttcttccctt cctttctcgc
540cacgttcgcc ggctttcccc gtcaagctct aaatcggggg ctccctttag ggttccgatt
600tagtgcttta cggcacctcg accccaaaaa acttgattag ggtgatggtt cacgtagtgg
660gccatcgccc tgatagacgg tttttcgccc tttgacgttg gagtccacgt tctttaatag
720tggactcttg ttccaaactg gaacaacact caaccctatc tcggtctatt cttttgattt
780ataagggatt ttgccgattt cggcctattg gttaaaaaat gagctgattt aacaaaaatt
840taacgcgaat tttaacaaaa tattaacgtt tacaatttaa atatttgctt atacaatctt
900cctgtttttg gggcttttct gattatcaac cggggtacat atgattgaca tgctagtttt
960acgattaccg ttcatcgcct gcactgcgcg ctcgctcgct cactgaggcc gcccgggcaa
1020agcccgggcg tcgggcgacc tttggtcgcc cggcctcagt gagcgagcga gcgcgcagag
1080agggagtgga attcacgcgt ggtacgatct gaattcggta caattcacgc gtggtacctc
1140tggtcgttac ataacttacg gtaaatggcc cgcctggctg accgcccaac gaccccgccc
1200attgacgtca ataatgacgt atgttcccat agtaacgcca atagggactt tccattgacg
1260tcaatgggtg gagtatttac ggtaaactgc ccacttggca gtacatcaag tgtatcatat
1320gccaagtacg ccccctattg acgtcaatga cggtaaatgg cccgcctggc attatgccca
1380gtacatgacc ttatgggact ttcctacttg gcagtacatc tactcgaggc cacgttctgc
1440ttcactctcc ccatctcccc cccctcccca cccccaattt tgtatttatt tattttttaa
1500ttattttgtg cagcgatggg ggcggggggg gggggggggg gggcgcgcgc caggcggggc
1560ggggcggggc gaggggcggg gcggggcgag gcggagaggt gcggcggcag ccaatcagag
1620cggcgcgctc cgaaagtttc cttttatggc gaggcggcgg cggcggcggc cctataaaaa
1680gcgaagcgcg cggcgggcgg gagcgggatc agccaccgcg gtggcggccc tagagtcgat
1740cgaggaactg aaaaaccaga aagttaactg gtaagtttag tctttttgtc ttttatttca
1800ggtcccggat ccggtggtgg tgcaaatcaa agaactgctc ctcagtggat gttgccttta
1860cttctaggcc tgtacggaag tgttacttct gctctaaaag ctgcggaatt gtacccgcgg
1920ccgatccacc ggtcgccacc atggtgagca agggcgagga gctgttcacc ggggtggtgc
1980ccatcctggt cgagctggac ggcgacgtaa acggccacaa gttcagcgtg tccggcgagg
2040gcgagggcga tgccacctac ggcaagctga ccctgaagtt catctgcacc accggcaagc
2100tgcccgtgcc ctggcccacc ctcgtgacca ccctgaccta cggcgtgcag tgcttcagcc
2160gctaccccga ccacatgaag cagcacgact tcttcaagtc cgccatgccc gaaggctacg
2220tccaggagcg caccatcttc ttcaaggacg acggcaacta caagacccgc gccgaggtga
2280agttcgaggg cgacaccctg gtgaaccgca tcgagctgaa gggcatcgac ttcaaggagg
2340acggcaacat cctggggcac aagctggagt acaactacaa cagccacaac gtctatatca
2400tggccgacaa gcagaagaac ggcatcaagg tgaacttcaa gatccgccac aacatcgagg
2460acggcagcgt gcagctcgcc gaccactacc agcagaacac ccccatcggc gacggccccg
2520tgctgctgcc cgacaaccac tacctgagca cccagtccgc cctgagcaaa gaccccaacg
2580agaagcgcga tcacatggtc ctgctggagt tcgtgaccgc cgccgggatc actctcggca
2640tggacgagct gtacaagtaa agcggccatc aagcttatcg ataccgtcga ctagagctcg
2700ctgatcagcc tcgactgtgc cttctagttg ccagccatct gttgtttgcc cctcccccgt
2760gccttccttg accctggaag gtgccactcc cactgtcctt tcctaataaa atgaggaaat
2820tgcatcgcat tgtctgagta ggtgtcattc tattctgggg ggtggggtgg ggcaggacag
2880caagggggag gattgggaag acaatagcag gcatgctggg gagagatcga tctaggaacc
2940cctagtgatg gagttggcca ctccctctct gcgcgctcgc tcgctcactg aggccgcccg
3000ggcaaagccc gggcgtcggg cgacctttgg tcgcccggcc tcagtgagcg agcgagcgcg
3060cagagaggga gtggccaacc cccccccccc cccccctgca tgcaggcgat tctcttgttt
3120gctccagact ctcaggcaat gacctgatag cctttgtaga gacctctcaa aaatagctac
3180cctctccggc atgaatttat cagctagaac ggttgaatat catattgatg gtgatttgac
3240tgtctccggc ctttctcacc cgtttgaatc tttacctaca cattactcag gcattgcatt
3300taaaatatat gagggttcta aaaattttta tccttgcgtt gaaataaagg cttctcccgc
3360aaaagtatta cagggtcata atgtttttgg tacaaccgat ttagctttat gctctgaggc
3420tttattgctt aattttgcta attctttgcc ttgcctgtat gatttattgg atgttggaat
3480tcctgatgcg gtattttctc cttacgcatc tgtgcggtat ttcacaccgc atatggtgca
3540ctctcagtac aatctgctct gatgccgcat agttaagcca gccccgacac ccgccaacac
3600ccgctgacgc gccctgacgg gcttgtctgc tcccggcatc cgcttacaga caagctgtga
3660ccgtctccgg gagctgcatg tgtcagaggt tttcaccgtc atcaccgaaa cgcgcgagac
3720gaaagggcct cgtgatacgc ctatttttat aggttaatgt catgataata atggtttctt
3780agacgtcagg tggcactttt cggggaaatg tgcgcggaac ccctatttgt ttatttttct
3840aaatacattc aaatatgtat ccgctcatga gacaataacc ctgataaatg cttcaataat
3900attgaaaaag gaagagtatg agtattcaac atttccgtgt cgcccttatt cccttttttg
3960cggcattttg ccttcctgtt tttgctcacc cagaaacgct ggtgaaagta aaagatgctg
4020aagatcagtt gggtgcacga gtgggttaca tcgaactgga tctcaacagc ggtaagatcc
4080ttgagagttt tcgccccgaa gaacgttttc caatgatgag cacttttaaa gttctgctat
4140gtggcgcggt attatcccgt attgacgccg ggcaagagca actcggtcgc cgcatacact
4200attctcagaa tgacttggtt gagtactcac cagtcacaga aaagcatctt acggatggca
4260tgacagtaag agaattatgc agtgctgcca taaccatgag tgataacact gcggccaact
4320tacttctgac aacgatcgga ggaccgaagg agctaaccgc ttttttgcac aacatggggg
4380atcatgtaac tcgccttgat cgttgggaac cggagctgaa tgaagccata ccaaacgacg
4440agcgtgacac cacgatgcct gtagcaatgg caacaacgtt gcgcaaacta ttaactggcg
4500aactacttac tctagcttcc cggcaacaat taatagactg gatggaggcg gataaagttg
4560caggaccact tctgcgctcg gcccttccgg ctggctggtt tattgctgat aaatctggag
4620ccggtgagcg tgggtctcgc ggtatcattg cagcactggg gccagatggt aagccctccc
4680gtatcgtagt tatctacacg acggggagtc aggcaactat ggatgaacga aatagacaga
4740tcgctgagat aggtgcctca ctgattaagc attggtaact gtcagaccaa gtttactcat
4800atatacttta gattgattta aaacttcatt tttaatttaa aaggatctag gtgaagatcc
4860tttttgataa tctcatgacc aaaatccctt aacgtgagtt ttcgttccac tgagcgtcag
4920accccgtaga aaagatcaaa ggatcttctt gagatccttt ttttctgcgc gtaatctgct
4980gcttgcaaac aaaaaaacca ccgctaccag cggtggtttg tttgccggat caagagctac
5040caactctttt tccgaaggta actggcttca gcagagcgca gataccaaat actgtccttc
5100tagtgtagcc gtagttaggc caccacttca agaactctgt agcaccgcct acatacctcg
5160ctctgctaat cctgttacca gtggctgctg ccagtggcga taagtcgtgt cttaccgggt
5220tggactcaag acgatagtta ccggataagg cgcagcggtc gggctgaacg gggggttcgt
5280gcacacagcc cagcttggag cgaacgacct acaccgaact gagataccta cagcgtgagc
5340tatgagaaag cgccacgctt cccgaaggga gaaaggcgga caggtatccg gtaagcggca
5400gggtcggaac aggagagcgc acgagggagc ttccaggggg aaacgcctgg tatctttata
5460gtcctgtcgg gtttcgccac ctctgacttg agcgtcgatt tttgtgatgc tcgtcagggg
5520ggcggagcct atggaaaaac gccagcaacg cggccttttt acggttcctg gccttttgct
5580ggccttttgc tcacatgttc tttcctgcgt tatcccctga ttctgtggat aaccgtatta
5640ccgcctttga gtgagctgat accgctcgcc gcagccgaac gaccgagcgc agcgagtcag
5700tgagcgagga agcggaagag cgcccaatac gcaaaccgcc tctccccgcg cgttggccga
5760ttcattaatg
57701321DNAArtificial SequenceITR-F primer 13ggaaccccta gtgatggagt t
211416DNAArtificial
SequenceITR-R primer 14cggcctcagt gagcga
161519DNAArtificial Sequencehamster-actin-F primer
15gtggccatct cttgcttga
191621DNAArtificial Sequencehamster-actin-R primer 16agggaaatgg
tgtgtgacat c
211723DNAArtificial SequenceEGFP-F primer 17agcagcacga cttcttcaag tcc
231824DNAArtificial
SequenceEGFP-R primer 18tgtagttgta ctccagcttg tgcc
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