Patent application title: Screening Assay for Insecticides
Inventors:
Paul Bernasconi (Chapel Hill, NC, US)
John Dorsch (Raleigh, NC, US)
Lynn Stam (Raleigh, NC, US)
Scott Zitko (Hillborough, NC, US)
Nancy B. Ranki (Cary, NC, US)
Mike Griswold (Cary, NC, US)
Franz-Josef Braun (Durham, NC, US)
Franz-Josef Braun (Durham, NC, US)
Gang Lu (Durham, NC, US)
Robert D. Kirkton (Morrrisville, NC, US)
Barbara Wedel (Durham, NC, US)
Joachim Dickhaut (Heidelberg, DE)
Assignees:
BASF SE
IPC8 Class: AA01N4388FI
USPC Class:
Class name:
Publication date: 2015-07-16
Patent application number: 20150196031
Abstract:
The present invention relates to polypeptides, preferably from Drosophila
melanogaster (DmShal) as target for insecticides.Claims:
1-19. (canceled)
20. A method for identifying an insecticidal active compound that reduces the activity of a G-protein coupled receptor (GPCR) with the activity of an octopamine receptor, which method comprises: a) assembling in a membrane a polypeptide with the activity of an octopamine receptor which is originally not present in said membrane; b) applying at one side of the membrane a compound suspected of having the ability to inhibit the activity of said polypeptide which is originally not present said membrane; c) determining the activity of said polypeptide; and d) identifying the compound applied in (b) that reduces the activity of said polypeptide as an insect-controlling compound, wherein the polypeptide has the activity of an octopamine receptor selected from the group consisting of oa2, Oamb, Oct-beta-2R and Oct-beta-3R, and such receptor is from a species selected from the group consisting of Drosophila melanogaster, Myzus persicae, and Tribolium castaneum.
21. The method of claim 20, wherein a gene coding for the polypeptide is expressed in a host cell and the polypeptide is assembled in the membrane of the host cell.
22. The method of claim 20, wherein the polypeptide is encoded by a nucleic acid molecule selected from the group consisting of: a) a nucleic acid molecule encoding a polypeptide shown in SEQ ID NO: 130, 134, 138, 142, 146, 150, 154, 158, 162, 166, 170 or 174; b) a nucleic acid molecule shown in SEQ ID NO: 129, 133, 137, 141, 145, 149, 153, 157, 161, 165, 169 or 173; c) a nucleic acid molecule, which, as a result of the degeneracy of the genetic code, can be derived from a polypeptide sequence according to SEQ ID NO: 130, 134, 138, 142, 146, 150, 154, 158, 162, 166, 170 or 174; d) a nucleic acid molecule having at least 50% identity with the nucleic acid molecule of b); e) a nucleic acid molecule encoding a polypeptide having at least 50% identity with the amino acid sequence of the polypeptide encoded by the nucleic acid molecule of (a) to (c); f) a nucleic acid molecule which hybridizes with a nucleic acid molecule of (a) to (c) under stringent hybridization conditions; g) a nucleic acid molecule encoding a polypeptide which can be isolated with the aid of monoclonal or polyclonal antibodies made against a polypeptide encoded by one of the nucleic acid molecules of (a) to (e) and having the activity of an octopamine G-protein coupled receptor (GPCR) and the receptor is selected from the group consisting of oa2, Oamb, Oct-beta-2R and Oct-beta-3R, and such receptor is from a species selected from the group consisting of Drosophila melanogaster, Myzus persicae, and Tribolium castaneum; h) a nucleic acid molecule encoding a polypeptide comprising the consensus sequence as shown in SEQ ID NO: 177, 178 or 179, or one or more motifs selected from the group consisting of SEQ ID NO: 180, 181, 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225 and 226; i) nucleic acid molecule which comprises a polynucleotide, which is obtained by amplifying a cDNA library or a genomic library using the primers selected from the group consisting of SEQ ID NO: 131, 132; 135, 136; 139, 140; 143, 144; 147, 148; 151, 152; 155, 156; 159, 160; 163, 164; 167, 168; 171, 172, 175, and 176; and j) a nucleic acid molecule which is obtainable by screening a suitable nucleic acid library under stringent hybridization conditions with a probe comprising a complementary sequence of a nucleic acid molecule of (a) or (b) or with a fragment thereof, having at least 200 nucleotides of a nucleic acid molecule complementary to a nucleic acid molecule sequence characterized in (a) to (e).
23. The method of claim 20, wherein the activity of the polypeptide is determined by fluorescence measurement.
24. The method of claim 21 wherein the activity of the polypeptide is determined with calcium concentration sensitive dyes.
25. The method of claim 21 wherein the host cell is a mammalian cell.
26. The method of claim 25 wherein the host cell is selected from the group consisting of CHO-cells and HEK293 cells.
27. The method of claim 20, further comprising: e) treating insects, populations of insect pest or the location wherein insect pests are to be controlled by applying to an insect pest, to a population of insect pests or to the location wherein said insect pest is to be controlled, an insect-controlling amount of the insect-controlling compound identified in step d); f) comparing the growth or the viability of the treated insect pest or population of insect pests or of insects pest or population of insect pests on said location with the growth and viability of untreated insects, population of insects or location of insects; and g) selecting the insect-controlling compounds that reduce the growth or the viability of the treated insect pest or population of insect pests or of insects pest or population of insect pests on said location following application of the insect-controlling compound of step e).
28. An assay system comprising a host organism, tissue, cells or a cell digest thereof or a membrane, which has embedded, assembled, intercalated or incorporated a nucleic acid molecule selected from the group consisting of the nucleic acid molecules depicted in claim 22 and, based on the expression of the nucleic acid molecule, a polypeptide having the biological activity of a G-protein coupled receptor (GPCR) with the activity of an octopamine receptor selected from the group consisting of oa2, Oamb, Oct-beta-2R and Oct-beta-3R, and such receptor is from a species selected from the group consisting of Drosophila melanogaster, Myzus persicae, and Tribolium castaneum, for identifying insecticidally active compound that reduces the activity of a G-protein coupled receptor (GPCR) with the activity of an octopamine receptor selected from the group consisting of oa2, Oamb, Oct-beta-2R and Oct-beta-3R, and such receptor is from a species selected from the group consisting of Drosophila melanogaster, Myzus persicae, and Tribolium castaneum.
29. The assay system of claim 28 whereby the host organism is a stably transfected mammalian cell which expresses a nucleic acid molecule selected from the group consisting of the nucleic acid molecules as depicted in claim 22.
30. The assay system of claim 29 wherein the mammalian cell is selected from the group consisting of CHO-cells, HEK293, COS, HeLa, NIH3T3, BAK21, Jurkat, CV-1, HepC-2-, Xenopus oocyte, Sf9, S2, Sf21, Hi5, Pc12, and U2OS.
31. A method for killing or inhibiting the growth or viability of an insect pest comprising applying to the insect pest the compound identified in claim 20.
32. A nucleic acid molecule selected from the group consisting of: a) a nucleic acid molecule encoding the polypeptide shown in 2, 6, 10, 14, 18, 22, 26, 30, 34, b) a nucleic acid molecule shown in SEQ ID NO: 129, 133, 137, 141, 145, 149, 153, 157, 161, 165, 169 or 173; c) a nucleic acid molecule, which, as a result of the degeneracy of the genetic code, can be derived from a polypeptide sequence according to SEQ ID NO: 130, 134, 138, 142, 146, 150, 154, 158, 162, 166, 170 or 174; d) a nucleic acid molecule having at least 50% identity with the nucleic acid molecule of b); e) a nucleic acid molecule encoding a polypeptide having at least 50% identity with the amino acid sequence of the polypeptide encoded by the nucleic acid molecule of (a) to (c); f) a nucleic acid molecule which hybridizes with a nucleic acid molecule of (a) to (c) under stringent hybridization conditions; g) a nucleic acid molecule encoding a polypeptide which can be isolated with the aid of monoclonal or polyclonal antibodies made against a polypeptide encoded by one of the nucleic acid molecules of (a) to (e) and having the activity of an octopamine G-protein coupled receptor (GPCR) and the receptor is selected from the group consisting of oa2, Oamb, Oct-beta-2R and Oct-beta-3R, and such receptor is from a species selected from the group consisting of Drosophila melanogaster, Myzus persicae, and Tribolium castaneum; h) a nucleic acid molecule encoding a polypeptide comprising the consensus sequence as shown in SEQ ID NO: 177, 178 or 179, or one or more motifs selected from the group consisting of SEQ ID NO: 180, 181, 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225 and 226; i) nucleic acid molecule which comprises a polynucleotide, which is obtained by amplifying a cDNA library or a genomic library using the primers selected from the group consisting of SEQ ID NO: 131, 132; 135, 136; 139, 140; 143, 144; 147, 148; 151, 152; 155, 156; 159, 160; 163, 164; 167, 168; 171, 172, 175, and 176; and j) a nucleic acid molecule which is obtainable by screening a suitable nucleic acid library under stringent hybridization conditions with a probe comprising a complementary sequence of a nucleic acid molecule of (a) or (b) or with a fragment thereof, having at least 200 nucleotides of a nucleic acid molecule complementary to a nucleic acid molecule sequence characterized in (a) to (e).
33. A transgenic cell comprising a vector comprising a nucleic acid molecule according to claim 32.
34. A transgenic cell comprising a vector according to claim 33.
35. A transgenic cell comprising a nucleic acid molecule according to claim 32.
36. A polypeptide encoded by a nucleic acid molecule according to claim 32.
Description:
CROSS-REFERENCE TO RELATED APPLICATIONS
[0001] This application is a continuation of U.S. application Ser. No. 13/127,505, filed Jun. 21, 2011, which is a National Stage application of International Application No. PCT/EP2009/064700, filed Nov. 5, 2009, which claims the benefit of U.S. Provisional Application No. 61/111,870, filed Nov. 6, 2008; U.S. Provisional Application No. 61/139,667, filed Dec. 22, 2008; U.S. Provisional Application No. 61/139,676, filed Dec. 22, 2008; and U.S. Provisional Application No. 61/139,686, filed Dec. 22, 2008; the entire contents of which are hereby incorporated herein by reference.
BACKGROUND OF THE INVENTION
[0002] Insects cause many human and animal diseases. Insects are also responsible for substantial agricultural and property damage resulting in economic loss. In spite of all the pesticide poison's used but also misused, insects still destroy over 30% of the world's food crops each year.
[0003] Many approaches have been developed in order to limit the damages caused by insects. One approach is the use of chemicals for insect control. The problem of many insecticides, for example like DDT, is the fact that they require a application in high concentrations and they have a unspecific, broad spectrum of activity. Chemical pesticides generally affect beneficial as well as nonbeneficial species. Many of them are persistent in the environment and accumulate therefore in the food chain.
[0004] Another approach are transgenic crops that express insecticidal toxins, such as protein toxins from the bacterium Bacillus thuringiensis.
[0005] Insect pests tend to acquire resistance to all kinds of insecticides because they have an exceptional ability to adapt to their environment, due to a mechanisms which leads to the rapid development of resistance in an insect population, such as short life cycles, a high reproductive rate and the ability to travel long distances. At the moment pests exhibiting insecticide resistance is increasing.
[0006] Therefore, there is still a need to find effective and economic insecticides with a very specific effect against insect pests. The more effective an insecticide is the less environmental hazard it creates.
[0007] This can be achieved by identification and isolation of a gene that codes for a protein which will control insect development and/or surviving.
SUMMARY OF THE INVENTION
[0008] The present invention relates to a potassium channel with the activity of a voltage-gated potassium channel Sha1 (Shaker cognate 1 or Shaker-like), preferably from Drosophila melanogaster (DmSha1) as target for insecticides. In one embodiment the voltage-gated potassium channel Sha1 is co-expressed with its accessory protein KChIP (potassium channel-interacting protein), preferably its putative accessory protein CG5890, the Drosophila KChIP (potassium channel-interacting protein) ortholog.
[0009] The present invention provides polypeptides with the activity of an insect voltage-gated potassium channel Sha1 (Shaker cognate 1 or Shaker-like), preferably from Drosophila melanogaster (DmSha1) and its accessory protein KChIP (potassium channel-interacting protein), preferably its putative accessory protein CG5890, the Drosophila KChIP (potassium channel-interacting protein) ortholog as targets for insecticides, provides novel nucleic acid sequences encoding a polypeptide with the activity of an insect voltage-gated potassium channel Sha1 (Shaker cognate 1 or Shaker-like) and its accessory protein KChIP (potassium channel-interacting protein) and functional equivalents of the aforementioned nucleic acid sequences.
[0010] The present invention relates further to the use of a polypeptide with the activity of an insect voltage-gated potassium channel Sha1 and/or its accessory protein KChIP (potassium channel-interacting protein) in a method and in an assay for identifying insecticidally active compound that reduces the activity of an insect voltage-gated potassium channel Sha1 (Shaker cognate 1 or Shaker-like) and/or its accessory protein KChIP (potassium channel-interacting protein). Furthermore, the invention relates to insecticidal compounds identified by the above mentioned method and the use of these compounds as insecticides.
[0011] In another embodiment, the present invention relates to a potassium channel with the activity of a Shaker potassium channel, preferably from Drosophila melanogaster as target for insecticides. In one embodiment the Shaker channel is co-expressed with a Hyperkinetic beta subunit, preferably H-kv beta subunit A or C subtype, preferably from Drosophila melanogaster.
[0012] The present invention further provides polypeptides with the activity of an insect Shaker channel, preferably from Drosophila melanogaster and a Hyperkinetic beta subunit, preferably H-kv beta subunit A or C subtype in an screening assay for insecticides, provides novel nucleic acid sequences encoding a polypeptide with the activity of an insect Shaker channel and a Hyperkinetic beta subunit, preferably H-kv beta subunit A or C subtype and functional equivalents of the aforementioned nucleic acid sequences.
[0013] The present invention furthermore relates further to the use of a polypeptide with the activity of an insect Shaker channel and/or a Hyperkinetic beta subunit, preferably H-kv beta subunit A or C subtype respectively in a method and in an assay for identifying insecticidally active compound that reduces the activity of an insect Shaker channel and a Hyperkinetic beta subunit, preferably H-kv beta subunit A or C subtype respectively. Furthermore, the invention relates to insecticidal compounds identified by the above mentioned method and the use of these compounds as insecticides.
[0014] In another embodiment, the present invention relates to a G-protein coupled receptor (GPCR) with the activity of an octopamine receptor, preferably from Drosophila melanogaster as target for insecticides.
[0015] The present invention further provides polypeptides with the activity of an octopamine receptor, preferably from Drosophila melanogaster in an screening assay for insecticides, provides novel nucleic acid sequences encoding a polypeptide with the activity of an octopamine receptor, preferably from Drosophila melanogaster and functional equivalents of the aforementioned nucleic acid sequences.
[0016] The present invention relates further to the use of a polypeptide with the activity of an octopamine receptor selected from the group consisting of oa2, preferably from Drosophila melanogaster, Oamb, Oct-beta-2R and Oct-beta-3R in a method and in an assay for identifying insecticidally active compound that reduces the activity of an octopamine receptor selected from the group consisting of oa2, preferably from Drosophila melanogaster, Oamb, Oct-beta-2R and Oct-beta-3R. Furthermore, the invention relates to insecticidal compounds identified by the above mentioned method and the use of these compounds as insecticides.
[0017] In another embodiment, the present invention relates to a SK-channel as target for insecticides. The present invention furthermore provides polypeptides with the activity of an insect small-conductance Ca2+-activated potassium channel as targets for insecticides, provides novel nucleic acid sequences encoding a polypeptide with the activity of an insect small-conductance Ca2+-activated potassium channel and functional equivalents of the aforementioned nucleic acid sequences.
[0018] The present invention relates further to the use of a polypeptide with the activity of an insect small-conductance Ca2+-activated potassium channel in a method and in an assay for identifying insecticidally active compound that reduces the activity of an insect small-conductance Ca2+-activated potassium channel. Furthermore, the invention relates to insecticidal compounds identitied by the above mentioned method and the use of these compounds as insecticides.
BRIEF DESCRIPTION OF THE DRAWINGS
[0019] FIG. 1: Vector NTI-generated map of the primary Sha1 clone showing the major features of the construct.
[0020] FIG. 2: Vector NTI-generated map of the primary KChIP clone showing the major features of the construct.
[0021] FIG. 3: Vector maps of pcDNA3/AcGFP-Sha1 and pcDNA3/AcGFP-Sha1delN2-40aa.
[0022] FIG. 4: Patch clamp data for full length and truncated constructs Sha1 and Sha1_delN when co-expressed with AmCyan as well as AcGFP-tagged versions (top); schematic representation of GFP-Sha1 pore mutant and patch clamp data for wild type and pore mutant.
[0023] FIG. 5: Sha1_DelN clones tested on FLIPR with KCl depolarization.
[0024] FIG. 6: K channel blocker inhibition curves of known K-channel blockers tested on FLIPR.
[0025] FIG. 7: Screening Sha1_delN Clone10 subclones by KCl depolarization on FLIPR.
[0026] FIG. 8: Patch clamp data for clones 10-2, 10-3 and 10-6. IV curves showing the relationship of applied voltage to current.
[0027] FIG. 9: Sha1_DelN C10-3 cells at passage 12. Left panel--fluorescence excitation, right panel--normal light.
[0028] FIG. 10: Effect of BaCl2 on Sha1 channel activity on FLIPR.
[0029] FIG. 11: Sha1_delN C10-3 function on FLIPR at passage 20.
[0030] FIG. 12: CHO-K1 cells stably expressing Sha1_delN were either mock transfected (lower line) or co-transfected with KChIP (upper line).
[0031] FIG. 13: Sha1/KChIP inhibition by arachidonic acid measured by whole cell patch-clamp; Right panel: Peak current amplitudes; Left panel: Integrated area.
[0032] FIG. 14: I/V curves for clones 18-13-6 and 18-13-20.
[0033] FIG. 15: Sha1/KChIP clone screening and Neo/Zeo control line. ScreenWorks screenshots showing primary FLIPR data and a reduced data table for the 19 clones and the Neo/Zeo pool (middle panel, wells H4-6).
[0034] FIG. 16: Sha1/KChIP final subclone screening. Reduced FLIPR data from subclone screening resulting in the final cell line.
[0035] FIG. 17: Sha1/KChIP assay FLIPR response profiles.
[0036] FIG. 18: Effect of dye in activation buffer measured on FLIPR Tetra.
[0037] FIG. 19: Comparison of BD and Greiner 384-well assay plates.
[0038] FIG. 20: Cell density optimization measured on FLIPR.
[0039] FIG. 21: Dye concentration evaluation for Sha1/KChIP clones 18-13 and 18-28.
[0040] FIG. 22: Effect of DMSO on Sha1/KChIP assay window size, standard deviations and Z' statistics.
[0041] FIG. 23: Effect of dye loading time on Sha1/KChIP assay window size, standard deviation and resulting Z' statistic.
[0042] FIG. 24: The effects of pre-cooling cells to room temperature on the Sha1/KChIP assay prior to dye-loading.
[0043] FIG. 25: Group-averaged primary FLIPR data and preliminary EC50 for Sha1/KChIP18-13 cell line.
[0044] FIG. 26: Comparison of GraphPad Prism scatter plots showing maximum and minimum responses with resultant statistics of the Sha1/KChIP assay for MDC and Axygen FLIPR 384 tips.
[0045] FIG. 27: Determination of stability of reagents used in the Sha1/KChIP 18-13 assay over time.
[0046] FIG. 28: Three-day minimum, midpoint and maximum statistics for Sha1/KChIP 20 assay cells.
[0047] FIG. 29: Three-day KCl dose response curves and EC50s of Sha1/KChIP 20 assay cells.
[0048] FIG. 30: Three-day amiloride dose response curves in Sha1/KChIP 20 cells.
[0049] FIG. 31: Sha1/KChIP 20 direct-to-plate assay results.
[0050] FIG. 32: ScreenWorks screenshots showing primary FLIPR data for BIOMOL compound screening in Sha1/KChIP 20 cells.
[0051] FIG. 33: Assay plate views showing percent inhibition of Sha1/KChIP response by BIOMOL compounds.
[0052] FIG. 34: Compound preparation protocol for BioFocus screening.
[0053] FIG. 35: Sha1/KChIP FLIPR BioFocus 1° screening--activation and distribution of actives on Sha1/KChIP.
[0054] FIG. 35A: PCR products from the reactions described in Table A1.
[0055] FIG. 36: VectorNTi map of the final pExSelect_Shaker construct.
[0056] FIG. 37: Assay data for mock clones upon KCl injection.
[0057] FIG. 38: Assay data for Shaker and Hkvβ clones upon KCl injection.
[0058] FIG. 39: Re-test assay data for two mock clones and six clones each from both Shaker plus A or C subtype.
[0059] FIG. 40: A-3A10 signal stability at different cell passages.
[0060] FIG. 41: A-3A10 signal stability after freezing and thawing.
[0061] FIG. 42: TEA effect on A-3A10 clone.
[0062] FIG. 43: Hypertonic and isotonic solutions analysis.
[0063] FIG. 44: A-3A10 II limiting dilution clone selection at FLIPR384.
[0064] FIG. 45: n° 1 and n° 9 II limiting dilution clones analyzed at FLIPRTETRA.
[0065] FIG. 46: Cell density dependency and KCl dose-response.
[0066] FIG. 47: DMSO sensitivity: 10000 c/w-24 h.
[0067] FIG. 48: DMSO sensitivity: 7500 c/w-24 h.
[0068] FIG. 49: DMSO sensitivity: 5000 c/w-24 h.
[0069] FIG. 50: Clone stability in culture and after freezing/thawing: 10000, 7500, 5000 c/w-24 h.
[0070] FIG. 51: EC50 reproducibility on three different days.
[0071] FIG. 52A: Patch clamp analysis of clone 3a10 subtype A.
[0072] FIG. 52B: Patch clamp analysis of clone 7d1 subtype C.
[0073] FIG. 53: a) Activation of Dm-Shaker in cells cultured for 10-11 passages; b) Activation of Dm-Shaker in cells cultured for 17-20 passages; c) Activation of Dm-Shaker in cells after thawing.
[0074] FIG. 54: The I-V relationship of voltage dependency of the activity of DM-Shaker.
[0075] FIG. 55A: Schematic of calcium release from activation of G-alpha-16-protein.
[0076] FIG. 55B: Vector maps of pcDNA3.1-OcrR for and pcDNA3.1-OcrR-GFP.
[0077] FIG. 55C: Fluorescence change in response to 1 μM and 100 nM octopamine.
[0078] FIG. 55D: Calcium-sensing Fluo-4 fluorescent dye response to octopamine or tyramine stimulation in CHO cells stably expressing G-alpha-16 and transiently expressed tagged or untagged OctR-pcDNA3.1.
[0079] FIG. 56: Stable pool of zeocin-selected CHO-- G-alpha-16 cells identified by green fluorescent protein expression.
[0080] FIG. 57: Screening of all GFP-positive monoclonal cell lines for response to octopamine.
[0081] FIG. 58: Response of clones #13 and #30 to octopamine on FLIPR Tetra.
[0082] FIG. 59: Single-cell response to octopamine for clones #13 and #30.
[0083] FIG. 60: OCTR clone 55 selection.
[0084] FIG. 61: Homogeneity assay of OCTR clone 55.
[0085] FIG. 62: Antagonist dose response curves and agonist dose response curves in transfected and parent cell lines analysed on FLIPR.
[0086] FIG. 63: Octopamine EC50 curves in different DMSO concentrations in 1st and 2nd additions.
[0087] FIG. 64: Graphical representation of effect of cell density measured on FLIP.
[0088] FIG. 65: Graphical representation of effect of dye concentration on assay window size.
[0089] FIG. 66: Graphical results of time course experiment of effect of dye loading time.
[0090] FIG. 67: Graphical results of effect of different tip washings measured on FLIPR.
[0091] FIG. 68: Octopamine and mianserin dose response curves run on three separate days in OCTR cells.
[0092] FIG. 69: A scatter plot of plate #7, showing the controls and test wells for the agonist portion of the screen (left) and antagonist portion of the screen (right).
[0093] FIG. 70: Vector map of pCRII-SK2+4D
[0094] FIG. 71: Vector map of pTriEx3 Neo SK
[0095] FIG. 72: Activation curves for CHO-K1 cells transfected with pTriEx3 Neo SK and activated with ionomycin.
[0096] FIG. 73: Activation curves comparing normal assay buffer and Ca2+ free buffer.
[0097] FIG. 74: EC50 curves for SK/CHO-K1 and SK/pTx-CHO cells activated with increasing amounts of ionomycin.
[0098] FIG. 75: Graphical representation of assay window size variability in relation to dye loading time.
[0099] FIG. 76: Graphical representation of DMSO concentration effect on ionomycin activation.
[0100] FIG. 77: Graphical representation of data used for statistically testing the probability of a differential response occurring by chance in the assay.
[0101] FIG. 78: Graphical result for BAY K-8644 L-type Ca2+ channel agonist.
[0102] FIG. 79: Graphical result for Propafenone.
[0103] FIG. 80: Graphical result for tetraethylammonium (SK3) as percent baseline.
[0104] FIG. 81: Graphical EC50 result for 4-aminopyridine (SK3-4) as a percent baseline.
[0105] FIG. 82: Graphical EC50 results for propafenone (SK3).
[0106] FIG. 83: Graphical representation of characterization of DmSK expression in CHO cells by functional expression assay.
[0107] FIG. 84: Graphical representation of the effect of Propafenone on DmSK expressing CHO cells
[0108] FIG. 85: Graphical results of whole cell patch-clamp assay for DmSK expressing CHO cells subjected to 70 μm propafenone.
[0109] FIG. 86: Schematic of an automated scheduled process for a single assay experiment.
[0110] FIG. 87: Schematic of Tripos compound dilution file.
[0111] FIG. 88: Schematic of Divpick compound dilution control file.
[0112] FIG. 89: Schematic of Read 1 plate map.
[0113] FIG. 90: Schematic of Read 2 plate map.
[0114] FIG. 91: Screenshot of Batch Export statistics interface.
[0115] FIG. 92: Reference graph of activity of rat SK channel in oocyte expression system.
DETAILED DESCRIPTION OF THE INVENTION
[0116] The present invention provides a insect voltage-gated potassium channel Sha1 (Shaker cognate 1 or Shaker-like) and/or its accessory protein KChIP (potassium channel-interacting protein) as new target for insecticides. The present invention puts further a method and an assay at disposal for identifying insecticidally active compounds that reduce the activity of a insect voltage-gated potassium channel Sha1 (Shaker cognate 1 or Shaker-like) and/or its accessory protein KChIP (potassium channel-interacting protein).
[0117] The outward voltage-dependent K+ currents found in many Drosophila embryonic and larval neurons arise from a mix of currents generated from the Shaker family members Shaw, Shab and Sha1 (Tsunoda, S. & L. Salkoll (1995) J Neuroscience. March; 15(3):1741-1754). Sha1 generates the transient component (the "A-type" current) of these macroscopic K+ currents and modulates these currents by, for example, causing a delayed current spike in certain neurons (Yu, D., Feng, C. & A. Guo (1999) J Neurobiology. August; 40(2):158-70). Alternative splicing, post-translational modifications and other Sha1-associated processes are likely responsible in part for the large repertoire of modulations seen in these neurons (Choi, J. C., Park, D. & L. C. Griffith (2004) J Neurophysiology. 91:2353-2365).
[0118] KChIP, a Kv4.x (Sha1) accessory protein, has been shown to dramatically increase the trafficking of Sha1 to the cell membrane, probably by promoting tetrameric channel assembly, and to cause distinct changes in Sha1 channel gating properties (Kunjilwar, K., Strang, C., DeRubeis, D. & P. J. Pfaffinger (2004) J Biological Chemistry. December; 279(52): 54542-54551).
[0119] Despite Sha1's role in neuronal transmission, the validation case for this target remains to be established. Our in situ data indicate low-levels of expression in the embryonic ventral nerve cord and visceral musculature. In situs at the Berkeley Drosophila Genome Project show staining in embryonic/larval visceral muscle, longitudinal visceral muscle fibers, ventral midline, and embryonic central nervous system including the ventral nerve cord. DmSha1 mRNA is a rare transcript with an expression peak at mid-embryonic stages (in-house Lynx data). There are two intronic transposon insertion lines at the Harvard Medical School Drosophila Stock Collection, but no viability data is associated with these, and no other Sha1 mutants are available. There is no microarray or northern data in the public domain.
[0120] No insecticide on the market has been identified as having modulation of Sha1 potassium channels as its primary mode of action, meaning that a compound does not merely contribute by a "side effect" to a insecticidal activity, but its activity is the key lethal effect.
[0121] In another embodiment, the present invention provides a insect Shaker channel and/or a Hyperkinetic beta subunit, preferably H-kv beta subunit A or C subtype respectively as new target for insecticides. The present invention puts further a method and an assay at disposal for identifying insecticidally active compounds that reduce the activity of a insect Shaker channel and/or a Hyperkinetic beta subunit, preferably H-kv beta subunit A or C subtype respectively.
[0122] The Drosophila Hyperkinetic (Hk) mutations alter a gene encoding a homolog of the mammalian K+ channel P subunit. Wang et al. (Biophysical Journal Volume 71, December 1996, 3167-3176) have shown that the Hk P subunit modulates a wide range of the Shaker (Sh) K+ current properties. Coexpression of Hk with Sh in Xenopus oocytes is also known from CHOUINARD et al. (Proc. Natl. Acad. Sci. USA, Vol. 92, pp. 6763-6767, July 1995 Neurobiology) which demonstrated that this coexpression increases current amplitudes and changes the voltage dependence and kinetics of activation and inactivation.
[0123] Surprisingly it was found, that the coexpression Shaker channel and a Hyperkinetic beta subunit, preferably H-kv beta subunit A or C subtype respectively leads to a new screening assay for insecticides.
[0124] No insecticide on the market has been identified as having modulation of Shaker channel and/or a Hyperkinetic beta subunit, preferably H-kv beta subunit A or C subtype respectively as its primary mode of action, meaning that a compound does not merely contribute by a "side effect" to a insecticidal activity, but its activity is the key lethal effect.
[0125] In another embodiment, the present invention provides a insect octopamine receptor selected from the group consisting of oa2, preferably from Drosophila melanogaster, Oamb, Oct-beta-2R and Oct-beta-3R as new target for insecticides. The present invention puts further a method and an assay at disposal for identifying insecticidally active compounds that reduce the activity of a insect octopamine receptor selected from the group consisting of oa2, preferably from Drosophila melanogaster, Oamb, Oct-beta-2R and Oct-beta-3R.
[0126] Octopamine, a biogenic monoamine structurally related to noradrenaline, is a major neurotransmitter, neuromodulator and neurohormone, mediating diverse physiological processes in peripheral and central nervous system of invertebrates. Together with tyramine, octopamine is the only neuroactive non-peptide transmitter whose physiological role is restricted to invertebrates.
[0127] The action of octopamine is mediated through various receptor classes like oa2, Oamb, Oct-beta-2R or Oct-beta-3R.
[0128] The fact that octopamine receptors can only/mainly be found in invertebrates makes them a significant target for insecticides. Compounds that specifically modulate octopamine receptors should therefore have low vertebrate toxicity. In addition to selectivity, octopamine receptors are a good target for insecticides due to its neuronal expression. Together with tyramine, octopamine is the only neuroactive non-peptide transmitter whose physiological role is restricted to invertebrates.
[0129] Although octopamine is a principal neuromediator in insects, its receptors have proven to be difficult to clone. To date, only a few octopamine receptors have been cloned.
[0130] The present invention puts a method at disposal for cloning octopamine receptors and for introducing them in membranes, preferably of cells. Preferably additionally linked proteins are introduced in the membrane.
[0131] Octopamine receptors can modulate their action through cyclic AMP production or intracellular calcium release, dependent on the receptor isoform. Octopamine receptors, preferably oa2 endogenously signals though cAMP. A detection of the activity of the receptor is difficult.
[0132] Therefore the present invention puts a method at disposal to force coupling to calcium, which leads to calcium release upon its activation. The calcium release is measurable by fluorescent calcium sensing dyes.
[0133] Surprisingly it was found, that the expression of octopamine receptor selected from the group consisting of oa2, preferably from Drosophila melanogaster, Oamb, Oct-beta-2R and Oct-beta-3R and expression of a promiscuous G-alpha protein leads to a new screening assay for insecticides.
[0134] GPCRs mediate signal transduction across a cell membrane upon the binding of a ligand to an extracellular portion of a GPCR. The intracellular portion of a GPCR interacts with a G-protein to modulate signal transduction from outside to inside a cell. A GPCR is therefore said to be "coupled" to a G-protein. G-proteins are composed of three polypeptide subunits: an α subunit, which binds and hydolyzes GTP, and a dimeric βγ subunit. Certain G-proteins are considered "promiscuous" G-proteins because their G subunits allow them to couple with GPCRs that normally couple with G-proteins of other families.
[0135] No insecticide on the market has been identified as having modulation of octopamine receptor selected from the group consisting of oa2, preferably from Drosophila melanogaster, Oamb, Oct-beta-2R and Oct-beta-3R as its primary mode of action, meaning that a compound does not merely contribute by a "side effect" to a insecticidal activity, but its activity is the key lethal effect.
[0136] In another embodiment, the present invention provides a small-conductance calcium-activated potassium channel as new target for insecticides. The present invention puts further a method and an assay at disposal for identifying insecticidally active compounds that reduce the activity of an insect small-conductance Ca2+-activated potassium channel.
[0137] Calcium-activated potassium channels are a functionally diverse group of ion channels activated by an increase in intracellular calcium. In mammals they are found in a majority of nerve cells where they contribute to the shaping of action potentials and regulate neuronal excitability. More specifically, their currents underlie the after hyperpolarization that follows an action potential; they also appear to be involved in neuronal firing frequency precision (for review see: Stocker et al., Nature Reviews Neuroscience 5, 2004).
[0138] This class of potassium channel exists in three general types based on single channel conductances. The large-, intermediate- and small-conductance channels are termed BK, IK and SK, respectively. In Drosophila, the genes are termed slo, slack and SK, respectively.
[0139] Each type of potassium ion channel shows a distinct pharmacological profile. Potassium ion channels have been associated with a number of physiological processes, including regulation of heartbeat, dilation of arteries, release of insulin, excitability of nerve cells, and regulation of renal electrolyte transport. Therefore potassium ion channels are already known as a therapeutic target in the treatment of a number of diseases as disclosed in WO 2005 099711 and US 2005 0239800.
[0140] Specifically, SK channels have been shown to have distinct pharmacological profiles. As disclosed in WO 2005 100349, different compounds were found with clinically relevant psycho activity using patch clamp techniques. The evaluated compounds are structurally related to tricyclic antidepressants and include amitriptyline, carbamazepine, chlorpromazine, cyproheptadine, imipramine, tacrine and trifluperazine. Each of the compounds tested was found to block SK2 channel currents with micromolar affinity. A number of neuromuscular inhibiting agents exist that affect SK channels, e. g. apamin, atracurium, pancuronium and tubocurarine (Shah et al., Br J Pharmacol 129: 627-30 (2000)).
[0141] Assays which use SK channels as target for pharmacological active compounds for treatment of diseases are also described:
[0142] Recombinant rat brain SK2 channels were expressed in HEK293 mammalian cells to study by patch clamp technique the effect of centrally acting muscle relaxant compounds, like chlorzoxazone (Cao et al., J. Pharmacol. Exp. Ther. 296: 683-689, 2001). The effect of metal ions on the activation of recombinant human SK4 channels has also been studied by patch clamp technique with transformed HEK293 cells (Cao et al., FEBS, 446: 137-141, 1999).
[0143] A method of identifying a compound which increases or decreases the potassium ion flux through a calcium-activated potassium SK channel is described in WO 98/11139.
[0144] Until now, classical molecular targets in insects were acetylcholinesterase, voltage-dependent sodium channels, ionotropic receptors such as nicotinic acetylcholine and GABA receptors. Gautier et al. (J. Pharm. Exp. Therapeutics, jpet.107.128694, 2007) have brought evidence for the participation of calcium-activated potassium channel as an indirect target in insecticide neurotoxicity. They demonstrated by knockdown of DUM (dorsal unpaired median) neuron. BK channels by antisense oligonucleotides treatment in DUM neurons from cockroaches (Periplaneta americana) that DMDS (dimethyl disulfide) inhibits calcium-activated potassium currents.
[0145] Further specific toxins, which inhibit the activity Ca2+-activated potassium channels, have been identified from several organisms, the most well-known being apamin from bee venom as disclosed for example in U.S. Pat. No. 5,607,843.
[0146] Nevertheless, at the moment no insecticide on the market has been identified that has modulation of Ca2+-activated potassium channels, preferably of an SK channel, as its primary mode of action, meaning that a compound does not merely contribute by a "side effect" to a insecticidal activity, but its activity is the key lethal effect.
[0147] In general, there is a great demand for the detection of polypeptides which might constitute novel targets for insecticides. The reasons are the above mentioned resistance problems and the ongoing endeavor to identify novel insecticidal active ingredients which are distinguished by a wide as possible spectrum of action, ecological and toxicological acceptability and/or low application rates.
[0148] The present invention now provides an insect voltage-gated potassium channel Sha1 (Shaker cognate 1 or Shaker-like) and/or its accessory protein KChIP (potassium channel-interacting protein) as targets for insecticides and a method and an assay for identifying insecticidally active compound that reduces the activity of an insect voltage-gated potassium channel Sha1 (Shaker cognate 1 or Shaker-like) and/or its accessory protein KChIP (potassium channel-interacting protein).
[0149] The present invention also provides an Shaker channel and/or a Hyperkinetic beta subunit, preferably H-kv beta subunit A or C subtype respectively as targets for insecticides and a method and an assay for identifying insecticidally active compound that reduces the activity of Shaker channel and/or a Hyperkinetic beta subunit, preferably H-kv beta subunit A or C subtype respectively.
[0150] The present invention further provides an octopamine receptor selected from the group consisting of oa2, preferably from Drosophila melanogaster, Oamb, Oct-beta-2R and Oct-beta-3R as targets for insecticides and a method and an assay for identifying insecticidally active compound that reduces the activity of octopamine receptor selected from the group consisting of oa2, preferably from Drosophila melanogaster, Oamb, Oct-beta-2R and Oct-beta-3R.
[0151] The present invention furthermore provides an insect small-conductance. Ca2+-activated potassium channel as targets for insecticides and a method and an assay for identifying insecticidally active compound that reduces the activity of an insect small-conductance Ca2+-activated potassium channel.
[0152] In practice, the detection of novel targets entails great difficulties since the inhibition of the activity of a polypeptide frequently has no further effect on the survival of insects. This may be attributed to the fact that insects may switches to alternative activities, hence the number of protein-encoding genes is at least 3 fold higher than that of microorganisms.
[0153] Furthermore, in the case of the SK-channel, with regard to the research results in human medicine, e.g. WO 2005 100349, which teaches that even a inhibition of the potassium ion flow through the potassium ion channels is useful in the treatment of diseases, it was surprisingly that the SK channels of the invention are targets for insecticides as thy influence their survival.
[0154] It is an object of the present invention to identify novel targets which are essential for the development or survival of insects, and to provide methods which are suitable for identifying insecticidal active compounds.
[0155] We have found that this object is achieved by the use of a polypeptide with the activity of an insect voltage-gated potassium channel Sha1 (Shaker cognate 1 or Shaker-like) and/or its accessory protein KChIP (potassium channel-interacting protein).
[0156] One embodiment of the present invention is directed to a method for identifying an insecticidal active compound that reduces the activity of a polypeptide with the activity of an insect voltage-gated potassium channel Sha1 (Shaker cognate 1 or Shaker-like) and/or its accessory protein KChIP (potassium channel-interacting protein) which method comprises:
[0157] a) assembling in a membrane a polypeptide with the activity of an insect voltage-gated potassium channel Sha1 (Shaker cognate 1 or Shaker-like) and/or its accessory protein KChIP (potassium channel-interacting protein), which is originally not present in said membrane,
[0158] b) applying at one side of the membrane the compound suspected of having the ability to inhibit the activity of said polypeptide which is originally not present said membrane,
[0159] c) determining the activity of said polypeptide and
[0160] d) identifying a compound applied in (b) that reduces the activity of said polypeptide.
[0161] In another embodiment, we have found that this object is achieved by the use of a polypeptide with the activity of an insect Shaker channel and/or a Hyperkinetic beta subunit, preferably H-kv beta subunit A or C subtype respectively.
[0162] One embodiment of the present invention is directed to a method for identifying an insecticidal active compound that reduces the activity of a polypeptide with the activity of an insect Shaker channel and/or a Hyperkinetic beta subunit, preferably H-kv beta subunit A or C subtype respectively which method comprises:
[0163] a) assembling in a membrane a polypeptide with the activity of an insect Shaker channel and/or a Hyperkinetic beta subunit, preferably H-kv beta subunit A or C subtype respectively, which is originally not present in said membrane,
[0164] b) applying at one side of the membrane the compound suspected of having the ability to inhibit the activity of said polypeptide which is originally not present said membrane,
[0165] c) determining the activity of said polypeptide and
[0166] d) identifying a compound applied in (b) that reduces the activity of said polypeptide.
[0167] In another embodiment, we have found that this object is achieved by the use of a polypeptide with the activity of an insect octopamine receptor selected from the group consisting of oa2, preferably from Drosophila melanogaster, Oamb, Oct-beta-2R and Oct-beta-3R.
[0168] One embodiment of the present invention is directed to a method for identifying an insecticidal active compound that reduces the activity of a polypeptide with the activity of an insect octopamine receptor selected from the group consisting of oa2, preferably from Drosophila melanogaster, Oamb, Oct-beta-2R and Oct-beta-3R which method comprises:
[0169] a) assembling in a membrane a polypeptide with the activity of an insect octopamine receptor selected from the group consisting of oa2, preferably from Drosophila melanogaster, Oamb, Oct-beta-2R and Oct-beta-3R, which is originally not present in said membrane,
[0170] b) applying at one side of the membrane the compound suspected of having the ability to inhibit the activity of said polypeptide which is originally not present said membrane,
[0171] c) determining the activity of said polypeptide and
[0172] d) identifying a compound applied in (b) that reduces the activity of said polypeptide.
[0173] In another embodiment, we have found that this object is achieved by the use of a polypeptide with the activity of an insect small-conductance Ca2+-activated potassium channel.
[0174] One embodiment of the present invention is directed to a method for identifying a insecticidally active compound that reduces the activity of an insect small-conductance Ca2+-activated potassium channel which method comprises:
[0175] a) assembling in a membrane a polypeptide with the activity of an, insect small-conductance Ca2+-activated potassium channel, which is originally not present in said membrane,
[0176] b) applying at one side of the membrane the compound suspected of having the ability to inhibit the activity of said polypeptide which is originally not present said membrane,
[0177] c) determining the activity of said polypeptide and
[0178] d) identifying a compound applied in (b) that reduces the activity of said polypeptide.
[0179] According to the present invention, a membrane is a structure like a semipermeable sheet or layer which acts as a barrier between two phases or solutions, whereby the membrane is solvent permeable, preferably water permeable. In one embodiment the membrane is a biological membrane, biomembrane or a lipid layer or lipid bilayer. The membrane is preferably composed of a fluid lipid bilayer. In one embodiment the membrane is the outer surface of a cell, cell compartment, vesicle, liposomes (vesicles made of phospholipids which are amphiphilic molecules), polymer vesicles or synthosomes.
[0180] Polymer vesicles are often referred as "polymersomes", which have been studied in detail and progress has been summarized in reviews [Discher et al., Science 2002, 297; 967 973]. Polymersomes or polymer vesicles consist of self-assembled di- or triblock copolymers.
[0181] The Synthosome, which is a functionalized nanocompartment system, has been developed for putative biotechnological applications [Nardin et al., Chem. Commun. 2000, 1433 1434]. A Synthosome is a hollow sphere consisting of a mechanically stable vesicle with a block copolymer membrane and an engineered transmembrane protein acting as the selective gate.
[0182] The, preferably insect, voltage-gated potassium channel Sha1 (Shaker cognate 1 or Shaker-like) and/or its accessory protein KChIP (potassium channel-interacting protein) of the invention is assembled or intercalated, embedded or integrated, terms which are synonymously and interchangeable, in the membrane.
[0183] The, preferably insect, Shaker channel and/or a Hyperkinetic beta subunit, preferably H-kv beta subunit A or C subtype respectively of the invention is assembled or intercalated, embedded or integrated, terms which are synonymously and interchangeable, in the membrane.
[0184] The, preferably insect, octopamine receptor selected from the group consisting of oa2, preferably from Drosophila melanogaster, Oamb, Oct-beta-2R and Oct-beta-3R of the invention is assembled or intercalated, embedded or integrated, terms which are synonymously and interchangeable, in the membrane.
[0185] The insect small-conductance Ca2+-activated potassium channel is assembled or intercalated, embedded or integrated, terms which are synonymously and interchangeable, in the membrane.
[0186] For the purposes of the invention, as a rule the plural is intended to encompass the singular and vice versa.
[0187] Unless otherwise specified, the terms "polynucleotides", "nucleic acid" and "nucleic acid molecule" are interchangeably in the present context. Unless otherwise specified, the terms "peptide", "polypeptide" and "protein" are interchangeably in the present context. The term "sequence" may relate to polynucleotides, nucleic acids, nucleic acid molecules, peptides, polypeptides and proteins, depending on the context in which the term "sequence" is used. The terms "gene(s)", "polynucleotide", "nucleic acid sequence", "nucleotide sequence", or "nucleic acid molecule(s)" as used herein refers to a polymeric form of nucleotides of any length, either ribonucleotides or deoxyribonucleotides. The terms refer only to the primary structure of the molecule.
[0188] Thus, the terms "gene(s)", "polynucleotide", "nucleic acid sequence", "nucleotide sequence", or "nucleic acid molecule(s)" as used herein include double- and single-stranded DNA and RNA. They also include known types of modifications, for example, methylation, "caps", substitutions of one or more of the naturally occurring nucleotides with an analog. Preferably, the DNA or RNA sequence comprises a coding sequence encoding the herein defined polypeptide.
[0189] A "coding sequence" is a nucleotide sequence, which is transcribed into a RNA, e.g. a regulatory RNA, such as a miRNA, a ta-siRNA, cosuppression molecule, a RNAi, a ribozyme, etc. or into a mRNA which is translated into a polypeptide when placed under the control of appropriate regulatory sequences. The boundaries of the coding sequence are determined by a translation start codon at the 5'-terminus and a translation stop codon at the 3'-terminus. A coding sequence can include, but is not limited to mRNA, cDNA, recombinant nucleotide sequences or genomic DNA, while introns may be present as well under certain circumstances.
[0190] As used in the present context a nucleic acid molecule may also encompass the untranslated sequence located at the 3' and at the 5' end of the coding gene region, for example at least 500, preferably 200, especially preferably 100, nucleotides of the sequence upstream of the 5' end of the coding region and at least 100, preferably 50, especially preferably 20, nucleotides of the sequence downstream of the 3' end of the coding gene region. In the event for example the antisense, RNAi, snRNA, dsRNA, siRNA, miRNA, ta-siRNA, cosuppression molecule, ribozyme etc. technology is used coding regions as well as the 5'- and/or 3'-regions can advantageously be used.
[0191] However, it is often advantageous only to choose the coding region for cloning and expression purposes.
[0192] "Polypeptide" refers to a polymer of amino acid (amino acid sequence) and does not refer to a specific length of the molecule. Thus peptides and oligopeptides are included within the definition of polypeptide. This term does also refer to or include post-translational modifications of the polypeptide, for example, glycosylations, acetylations, phosphorylations and the like. Included within the definition are, for example, polypeptides containing one or more analogs of an amino acid (including, for example, unnatural amino acids, etc.), polypeptides with substituted linkages, as well as other modifications known in the art, both naturally occurring and non-naturally occurring.
[0193] The terms "comprise" or "comprising" and grammatical variations thereof when used in this specification are to be taken to specify the presence of stated features, integers, steps or components or groups thereof, but not to preclude the presence or addition of one or more other features, integers, steps, components or groups thereof.
[0194] The terms "reduction", "repression", "decrease" or "inhibition" relate to a corresponding change of a property in an organism, a part of an organism such as a tissue, or in a cell. Under "change of a property" it is understood that the activity is changed in a specific volume or in a specific amount of protein relative to a corresponding volume or amount of protein of a control, reference or wild type.
[0195] The terms "reduction", "repression", "decrease" or "inhibition" include the change of said property in only parts of the subject of the present invention, for example, the modification can be found in compartment of a cell, like an organelle, or in a part of a organism, like tissue, wing, leg, trunk etc. . . . . Preferably, the "reduction", "repression", "decrease" or "inhibition" is found cellular, thus the term "reduction, decrease or inhibition of an activity" relates to the cellular reduction, decrease or inhibition compared to the wild type cell or to the control cell.
[0196] Accordingly, the term "reduction", "repression", "decrease" or "inhibition" means that the specific activity of a gene product, a protein or a regulatory RNA as well as the amount of a compound or metabolite, e.g. of a polypeptide, a nucleic acid molecule, a ion or an encoding mRNA or DNA, can be reduced, decreased or inhibited in a specific volume. The terms "reduction", "repression", "decrease" or "inhibition" include that the reason for said "reduction", "repression", "decrease" or "inhibition" can be a chemical compound that is administered to the organism or part thereof.
[0197] The terms "reduction", "repression", or "decrease" are exchangeable. The term "reduction" shall include the terms "repression", "decrease" or "inhibition" if not otherwise specified.
[0198] Reduction is also understood as meaning the modification of the activity. In this context, the function or activity, e.g. the "functional activity" or the "biological activity", is reduced by at least 10%, advantageously 20%, preferably 30%, especially preferably 40%, 50% or 60%, very especially preferably 70%, 80%, 85% or 90% or more, very especially preferably are 95%, more preferably are 99% or more in comparison to the control, reference or wild type. Most preferably the reduction, decrease or deletion in activity amounts to essentially 100%. Thus, a particularly advantageous embodiment is the inactivation, e.g. inhibition of the function of a compound, e.g. a polypeptide or a nucleic acid molecule.
[0199] The terms "wild type", "control" or "reference" are exchangeable and can be a cell or a part of organisms such as an organelle or a tissue, or an organism, in particular an insect, which was not modified or treated according to the herein described process according to the invention. Accordingly, the cell or a part of organisms such as an organelle or a tissue, or an organism, in particular an insect used as wild type, control or reference corresponds to the cell, organism or part thereof as much as possible and is in any other property but in the result of the process of the invention as identical to the subject matter of the invention as possible. Thus, the wild type, control, or reference is treated identically or as identical as possible, saying that only conditions or properties might be different which do not influence the quality of the tested property.
[0200] Preferably, any comparison is carried out under analogous conditions. The term "analogous conditions" means that all conditions such as, for example, culture or growing conditions, assay conditions (such as buffer composition, temperature, substrates, pathogen strain, concentrations and the like) are kept identical between the experiments to be compared.
[0201] The "reference", "control", or "wild type" is preferably a subject, e.g. an organelle, a cell, a tissue, an organism, in particular an insect, which was not modified or treated according to the herein described process of the invention and is in any other property as similar to the subject matter of the invention as possible. The reference, control, or wild type is in its genome, transcriptome, proteome or metabolome as similar as possible to the subject of the present invention. Preferably, the term "reference-" "control-" or "wild type-"-organelle, -cell, -tissue or -organism, relates to an organelle, cell, tissue or organism, which is nearly genetically identical to the organelle, cell, tissue or organism, of the present invention or a part thereof preferably 95%, more preferred are 98%, even more preferred are 99.00%, in particular 99.10%, 99.30%, 99.50%, 99.70%, 99.90%, 99.99%, 99.999% or more. Most preferable the "reference", "control", or "wild type" is a subject, e.g. an organelle, a cell, a tissue, an organism, which is genetically identical to the organism, cell or organelle used according to the process of the invention except that the responsible or activity conferring nucleic acid molecules or the gene product encoded by them are amended, manipulated, exchanged or introduced according to the inventive process.
[0202] Preferably, the reference, control or wild type differs form the subject of the present invention only in the activity of the polypeptide of the invention or the polypeptide used in the method of the invention.
[0203] "Significant decrease": referring to the activity of the polypeptide encoded by a nucleic acid sequence according to the invention, this is understood as meaning a decrease in activity of the polypeptide treated with a test compound in comparison with the control. e.g. in comparison with the activity of the polypeptide which has not been incubated with the test compound, with a magnitude outside a measurement error.
[0204] Reference to the "functional activity" of an ion channel should be understood as a reference to any one or more of the functions and/or traits which an ion channel performs or is involved in.
[0205] Reference to the "functional activity" of an octopamine receptor should be understood as a reference to any one or more of the functions and/or traits which an octopamine receptor performs or is involved in.
[0206] In one embodiment the term "functional activity" or "biological activity" of a polypeptide with the activity of an insect voltage-gated potassium channel Sha1 (Shaker cognate 1 or Shaker-like) and/or its accessory protein KChIP (potassium channel-interacting protein) is defined by the transport of potassium ions across membranes.
[0207] In another embodiment the term "functional activity" or "biological activity" of a polypeptide with the activity of an insect Shaker channel and/or a Hyperkinetic beta subunit, preferably H-kv beta subunit A or C subtype respectively is defined by the transport of potassium ions across membranes.
[0208] In another embodiment the term "functional activity" or "biological activity" of a polypeptide with the activity of an octopamine receptor selected from the group consisting of oat, preferably from Drosophila melanogaster, Oamb, Oct-beta-2R and Oct-beta-3R is defined by the fact, that octopamine receptors are selectively blocked by α-adrenergic antagonists and activated by α-adrenergic agonists.
[0209] In another embodiment the term "functional activity" or "biological activity" of a polypeptide with the activity of an insect small-conductance Ca2+-activated potassium channel is defined by the transport of potassium ions across membranes. This transport is activated by calcium ions, with a half maximal activation or Ca2+ sensitivity K0.5 selected from the group of intervals 200-1000 nM, 300-900 nM, 300-800 nM and 400-800 nM. The SK channels of the invention have a single-channel conductance selected from the group of intervals 2-20 pS, 3-20 pS, 4-15 pS, 5-12 pS and 5-10 pS. The biological activity of a polypeptide of the invention is apamine-insensitive.
[0210] The term "activity" of a compound refers to the function of a compound in a biological system such as a cell, an organ or an organism. For example, the term "activity" of a compound refers to the enzymatic function, regulatory function or its function as binding partner, transporter, regulator, or carrier, etc of a compound.
[0211] Insecticidal activity of a compound refers to the ability of said compound to kill or paralyze insects, or to inhibit the insect development or growth in such a manner that the insects provide less damage. Compounds having insecticidal activity are also referred to as toxic to insects. Insecticidal activity of a compound induce not just to death of insects, but also include other detrimental effects on insects such as sickness, anti-feedant activity, growth retardation, reduced reproductive ability and reduced fecundity.
[0212] A compound with a insecticidal activity as used herein is a "insecticide". The term "insecticide" generally refers to chemicals, biological agents, and other compounds that adversely affect insect viability, e.g., that kill, paralyze, sterilize or otherwise disable insect species in the areas of agricultural crop protection, human and animal health.
[0213] In one embodiment the method of the invention is implemented with a membrane which comprises at least one polypeptide encoded by a nucleic acid molecule selected from the group consisting of:
[0214] a) a nucleic acid molecule encoding the polypeptide shown in SEQ ID NO: 2, 6, 10, 14, 18, 22, 26 and/or 30;
[0215] b) a nucleic acid molecule shown in SEQ ID NO: 1, 5, 9, 13, 17, 21, 25 and/or 29;
[0216] c) a nucleic acid molecule, which, as a result of the degeneracy of the genetic code, can be derived from a polypeptide sequence according to SEQ ID NO: 2, 6, 10, 14, 18, 22, 26 and/or 30;
[0217] d) a nucleic acid molecule having at least 50% identity with the nucleic acid molecule sequence of a polynucleotide comprising the nucleic acid molecule shown in SEQ ID NO: 1, 5, 9, 13, 17, 21, 25 and/or 29;
[0218] e) a nucleic acid molecule encoding a polypeptide having at least 50% identity with the amino acid sequence of the polypeptide encoded by the nucleic acid molecule of (a) to (c) and having the activity of an insect voltage-gated potassium channel Sha1 (Shaker cognate 1 or Shaker-like) and/or its accessory protein KChIP (potassium channel-interacting protein) respectively;
[0219] f) nucleic acid molecule which hybridizes with a nucleic acid molecule of (a) to (c) under stringent hybridization conditions;
[0220] g) a nucleic acid molecule encoding a polypeptide which can be isolated with the aid of monoclonal or polyclonal antibodies made against a polypeptide encoded by one of the nucleic acid molecules of (a) to (e) and having the activity of a an insect voltage-gated potassium channel Sha1 (Shaker cognate 1 or Shaker-like) and/or its accessory protein KChIP (potassium channel-interacting protein) respectively;
[0221] h) a nucleic acid molecule encoding a polypeptide comprising the consensus sequence as depicted in SEQ ID NO: 33 and/or 34 respectively or one or more motifs as depicted in SEQ ID NO: 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54 and/or 55, and/or 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70 and/or 71 respectively;
[0222] i) nucleic acid molecule which comprises a polynucleotide, which is obtained by amplifying a cDNA library or a genomic library using the primers in SEQ ID NO: 3, 4; 7, 8; 11, 12; 15, 16; 19, 20; 23, 24; 27, 28 and/or 31, 32 respectively;
[0223] and
[0224] j) a nucleic acid molecule which is obtainable by screening a suitable nucleic acid library under stringent hybridization conditions with a probe comprising a complementary sequence of a nucleic acid molecule of (a) or (b) or with a fragment thereof, having at least 15 nt, preferably 20 nt, 30 nt, 50 nt, 100 nt, 200 nt or 500 nt of a nucleic acid molecule complementary to a nucleic acid molecule sequence characterized in (a) to (e) and encoding a polypeptide and having the activity of a an insect voltage-gated potassium channel Sha1 (Shaker cognate 1 or Shaker-like) and/or its accessory protein KChIP (potassium channel-interacting protein) respectively.
[0225] In one embodiment the method of the invention is implemented with a membrane which comprises at least a functional equivalent or homologue of a polypeptide encoded by a nucleic acid molecule selected from the group as depicted above under item a), b), c), d), e), g), h), i) or j), for example a Sha1_delN mutant, which has an N-terminal deletion for the 2-40 amino acid coding region.
[0226] In one embodiment the method of the invention is implemented with a membrane which comprises at least a functional equivalent or homologue of a polypeptide with the activity of a voltage-gated potassium channel Sha1 as depicted in SEQ ID NO: 2, 6, 10, 14, 18 and/or 22 or homolog thereof and/or a Sha1_delN mutant, which has an N-terminal deletion for the 2-40 amino acid coding region linked to a polypeptide with the activity of its accessory protein KChIP as depicted in SEQ ID NO: 26 and/or 30 or homolog thereof.
[0227] In another embodiment the method of the invention is implemented with a membrane which comprises at least one polypeptide encoded by a nucleic acid molecule selected from the group consisting of:
[0228] a) a nucleic acid molecule encoding a polypeptide comprising the polypeptide shown in SEQ ID NO: 73, 75, 77, 79, 81, 83, 85 and/or 87;
[0229] b) a nucleic acid molecule comprising the nucleic acid molecule shown in SEQ ID NO: 72, 74, 76, 78, 80, 82, 84 and/or 86;
[0230] c) a nucleic acid molecule, which, as a result of the degeneracy of the genetic code, can be derived from a polypeptide comprising a polypeptide sequence according to SEQ ID NO: 73, 75, 77, 79, 81, 83, 85 and/or 87;
[0231] d) a nucleic acid molecule having at least 50% identity with the nucleic acid molecule sequence of a polynucleotide comprising the nucleic acid molecule shown in SEQ ID NO: 72, 74, 76, 78, 80, 82, 84 and/or 86;
[0232] e) a nucleic acid molecule encoding a polypeptide having at least 50% identity with the amino acid sequence of the polypeptide encoded by the nucleic acid molecule of (a) to (c) and having the activity of an insect Shaker channel and/or a Hyperkinetic beta subunit, preferably H-kv beta subunit A or C subtype respectively;
[0233] f) nucleic acid molecule which hybridizes with a nucleic acid molecule of (a) to (c) under stringent hybridization conditions;
[0234] g) a nucleic acid molecule encoding a polypeptide which can be isolated with the aid of monoclonal or polyclonal antibodies made against a polypeptide encoded by one of the nucleic acid molecules of (a) to (e) and having the activity of a an insect Shaker channel and/or a Hyperkinetic beta subunit, preferably H-kv beta subunit A or C subtype respectively;
[0235] h) a nucleic acid molecule encoding a polypeptide comprising the consensus sequence as depicted in SEQ ID NO: 102 and/or 103 respectively or one or more motifs as depicted in SEQ ID NO: 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124 and/or 125 and/or 126, 127 and/or 128 respectively;
[0236] i) nucleic acid molecule which comprises a polynucleotide, which is obtained by amplifying a cDNA library or a genomic library using the primers in SEQ ID NO: 88, 89; 90, 91; 92, 93; 94, 95; 96, 97; 98, 99 and/or 100, 101 respectively;
[0237] and
[0238] j) a nucleic acid molecule which is obtainable by screening a suitable nucleic acid library under stringent hybridization conditions with a probe comprising a complementary sequence of a nucleic acid molecule of (a) or (b) or with a fragment thereof, having at least 15 nt, preferably 20 nt, 30 nt, 50 nt, 100 nt, 200 nt or 500 nt of a nucleic acid molecule complementary to a nucleic acid molecule sequence characterized in (a) to (e) and encoding a polypeptide and having the activity of a an insect. Shaker channel and/or a Hyperkinetic beta subunit, preferably H-kv beta subunit A or C subtype respectively.
[0239] In one embodiment the method of the invention is implemented with a membrane which comprises at least a functional equivalent or homologue of a polypeptide encoded by a nucleic acid molecule selected from the group as depicted above under item a), b), c), d), e), f), g), h), i) or j), whereby the nucleic acid molecule comprises a Kozak sequence (e.g. ACCATG).
[0240] In one embodiment the method of the invention is implemented with a membrane which comprises at least a functional equivalent or homologue of a polypeptide encoded by a nucleic acid molecule selected from the group as depicted above under item a), b), c), d), e), f), g), h), i) or j), whereby the nucleic acid molecule comprises a sequence coding for a 400 bp or 500 bp 5'-fragment of the Shaker channel, preferably comprising the Shaker ATG codon, preferably together with a proper Kozak, and/or 1770 bp fragment of the Shaker channel and/or for a Hyperkinetic beta subunit, preferably H-kv beta subunit A or C subtype.
[0241] In one embodiment the method of the invention is implemented with a membrane which comprises any combination of at least a polypeptide selected from the group consisting of SEQ ID NO: 73, 75, 77, 79, 81 and 83 or a functional equivalent or homologue thereof and a polypeptide selected from the group consisting of SEQ ID NO: 85 and 87 or a functional equivalent or homologue thereof.
[0242] In another embodiment the method of the invention is implemented with a membrane which comprises at least one polypeptide encoded by a nucleic acid molecule selected from the group consisting of:
[0243] a) a nucleic acid molecule encoding the polypeptide shown in SEQ ID NO: 130, 134, 138, 142, 146, 150, 154, 158, 162, 166, 170 and/or 174;
[0244] b) a nucleic acid molecule shown in SEQ ID NO: 129, 133, 137, 141, 145, 149, 153, 157, 161, 165, 169 and/or 173;
[0245] a nucleic acid molecule, which, as a result of the degeneracy of the genetic code, can be derived from a polypeptide sequence according to SEQ ID NO: 130, 134, 138, 142, 146, 150, 154, 158, 162, 166, 170 and/or 174;
[0246] d) a nucleic acid molecule having at least 50% identity with the nucleic acid molecule sequence of a polynucleotide comprising the nucleic acid molecule shown in SEQ ID NO: 129, 133, 137, 141, 145, 149, 153, 157, 161, 165, 169 and/or 173;
[0247] e) a nucleic acid molecule encoding a polypeptide having at least 50% identity with the amino acid sequence of the polypeptide encoded by the nucleic acid molecule of (a) to (c) and having the activity of an insect octopamine receptor selected from the group consisting of oa2, preferably from Drosophila melanogaster, Oamb, Oct-beta-2R and Oct-beta-3R;
[0248] f) nucleic acid molecule which hybridizes with a nucleic acid molecule of (a) to (c) under stringent hybridization conditions;
[0249] g) a nucleic acid molecule encoding a polypeptide which can be isolated with the aid of monoclonal or polyclonal antibodies made against a polypeptide encoded by one of the nucleic acid molecules of (a) to (e) and having the activity of a an insect octopamine receptor selected from the group consisting of oa2, preferably from Drosophila melanogaster, Oamb, Oct-beta-2R and Oct-beta-3R;
[0250] h) a nucleic acid molecule encoding a polypeptide comprising the consensus sequence as depicted in SEQ ID NO: 177, 178 and/or 179 respectively or one or more motifs as depicted in SEQ ID NO: 180, 181, 182, 183, 184, 185, 186, 187, 188, 189 and/or 190, and/or 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207 and/or 208, and/or 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225 and/or 226 respectively;
[0251] i) nucleic acid molecule which comprises a polynucleotide, which is obtained by amplifying a cDNA library or a genomic library using the primers in SEQ ID NO: 131, 132; 135, 136; 139, 140; 143, 144; 147, 148; 151, 152; 155, 156, 159, 160; 163, 164; 167, 168; 171, 172 and/or 175, 176;
[0252] and
[0253] j) a nucleic acid molecule which is obtainable by screening a suitable nucleic acid library under stringent hybridization conditions with a probe comprising a complementary sequence of a nucleic acid molecule of (a) or (b) or with a fragment thereof, having at least 15 nt, preferably 20 nt, 30 nt, 50 nt, 100 nt, 200 nt or 500 nt of a nucleic acid molecule complementary to a nucleic acid molecule sequence characterized in (a) to (e) and encoding a polypeptide and having the activity of a an insect octopamine receptor selected from the group consisting of oa2, preferably from Drosophila melanogaster, Oamb, Oct-beta-2R and Oct-beta-3R.
[0254] In one embodiment the method of the invention is implemented with a membrane which comprises at least a functional equivalent or homologue of a polypeptide encoded by a nucleic acid molecule selected from the group as depicted above under item a), b), c), d), e), f), g), h), i) or j) and additionally a marker protein, e.g. GFP, whereby it is preferably linked with the polypeptide of the invention, e.g. encoded by a nucleic acid molecule selected from the group as depicted above under item a), b), c), d), e), f), g), h), i) or j).
[0255] In one embodiment the method of the invention is implemented with a membrane which comprises at least a functional equivalent or homologue of a polypeptide as shown in SEQ ID NO: 46 encoded by a nucleic acid molecule as depicted in SEQ ID NO: 173 or a homolog thereof.
[0256] In one embodiment the method of the invention is implemented with a membrane which comprises at least a functional equivalent or homologue of a polypeptide encoded by a nucleic acid molecule selected from the group as depicted above under item a), b), c), d), e), f), g), h), i) or j) and additionally a "promiscuous" G-protein, whose G subunits allow the G-proteins to couple with GPCRs that normally couple with G-proteins of other families, whereby the "promiscuous" G-protein is preferably linked with the polypeptide of the invention, e.g. encoded by a nucleic acid molecule selected from the group as depicted above under item a), b), c), d), e), f), g), h), i) or j).
[0257] In one embodiment the method of the invention is implemented with a membrane which comprises at least a functional equivalent or homologue of a polypeptide encoded by a nucleic acid molecule selected from the group as depicted above under item a), b), c), d), e), g), h), i) or j) and additionally a marker protein, e.g. GFP, and/or additionally a "promiscuous" G-protein, whereby marker protein and/or the "promiscuous" G-protein is preferably linked with the polypeptide of the invention, e.g. encoded by a nucleic acid molecule selected from the group as depicted above under item a), b), c), d), e), f), g), h), i) or j).
[0258] In one embodiment the method of the invention is implemented with a membrane which comprises at least a functional equivalent or homologue of a polypeptide as shown in SEQ ID NO: 46 encoded by a nucleic acid molecule as depicted in SEQ ID NO: 173 or a homolog thereof and additionally a "promiscuous" G-protein whereby the protein is preferably linked with the.
[0259] In one embodiment the "promiscuous" G-protein is a promiscuous G-alpha-16-protein or a homolog thereof.
[0260] In another embodiment the method of the invention is implemented with a membrane which comprises at least one polypeptide encoded by a nucleic acid molecule selected from the group consisting of:
[0261] a) a nucleic acid molecule encoding the polypeptide shown in SEQ ID NO: 228, 230, 232;
[0262] b) a nucleic acid molecule shown in SEQ ID NO: 227, 229, 231;
[0263] c) a nucleic acid molecule, which, as a result of the degeneracy of the genetic code, can be derived from a polypeptide sequence according to SEQ ID NO: 228, 230, 232;
[0264] d) a nucleic acid molecule having at least 50% identity with the nucleic acid molecule sequence of a polynucleotide comprising the nucleic acid molecule shown in SEQ ID NO: 227, 229, 231;
[0265] e) a nucleic acid molecule encoding a polypeptide having at least 50% identity with the amino acid sequence of the polypeptide encoded by the nucleic acid molecule of (a) to (c) and having the activity of a small-conductance Ca2+-activated potassium channel;
[0266] f) nucleic acid molecule which hybridizes with a nucleic acid molecule of (a) to (c) under stringent hybridization conditions;
[0267] g) a nucleic acid molecule encoding a polypeptide which can be isolated with the aid of monoclonal or polyclonal antibodies made against a polypeptide encoded by one of the nucleic acid molecules of (a) to (e) and having the activity of a small-conductance Ca2+-activated potassium channel;
[0268] h) a nucleic acid molecule encoding a polypeptide comprising the consensus sequence as shown in SEQ ID NO: 239 or one or more motifs selected from the group consisting of SEQ ID NO: 240, 241, 242, 243, 244, 245, 246, 247, 248, 249, 250, 251, 252 and 253;
[0269] i) nucleic acid molecule which comprises a polynucleotide, which is obtained by amplifying a cDNA library or a genomic library using the primers in SEQ ID NO: 233, 234, 235, 236; and 237, 238 respectively;
[0270] and
[0271] j) a nucleic acid molecule which is obtainable by screening a suitable nucleic acid library under stringent hybridization conditions with a probe comprising a complementary sequence of a nucleic acid molecule of (a) or (b) or with a fragment thereof, having at least 15 nt, preferably 20 nt, 30 nt, 50 nt, 100 nt, 200 nt or 500 nt of a nucleic acid molecule complementary to a nucleic acid molecule sequence characterized in (a) to (e) and encoding a polypeptide and having the activity of a small-conductance Ca2+-activated potassium channel.
[0272] In one embodiment the method of the invention is implemented with a membrane which comprises at least a functional equivalent or homologue of a polypeptide encoded by a nucleic acid molecule selected from the group as depicted above under item a), b), c), d), e), f), g), h), i) or j).
[0273] The term "functional equivalent" of a polypeptide as depicted above is a polypeptide which confers essentially the activity of a polypeptide as depicted in SEQ ID NO: 2, 6, 10, 14, 18, 22, 26 and/or 30, in the case of the shaker channel and/or a Hyperkinetic beta subunit SEQ ID NO:73, 75, 77, 79, 81, 83, 85 and/or 87, in the case of the G-protein coupled receptor SEQ ID NO: 130, 134, 138, 142, 146, 150, 154, 158, 162, 166, 170 and/or 174 and in the case of the SK-channel SEQ ID NO: 228, 230, 232.
[0274] The term "functional equivalent" of a nucleic acid molecule as depicted above is a polynucleotide which confers essentially the activity of a nucleic acid molecule as depicted in SEQ ID NO: 1, 5, 9, 13, 17, 21, 25 and/or 29, in the case of the shaker channel and/or a Hyperkinetic beta subunit SEQ ID NO: 72, 74, 76, 78, 80, 82, 84 and/or 86, in the case of the G-protein coupled receptor SEQ ID NO: 129, 133, 137, 141, 145, 149, 153, 157, 161, 165, 169 and/or 173 and in the case of the SK-channel SEQ ID NO: 227, 229, 231.
[0275] In accordance with the invention, a protein or polypeptide has the activity of a polypeptide as depicted in SEQ ID NO: 2, 6, 10, 14, 18, 22, 26 and/or 30, in the case of the shaker channel and/or a Hyperkinetic beta subunit SEQ ID NO: 73, 75, 77, 79, 81, 83, 85 and/or 87, in the case of the G-protein coupled receptor SEQ ID NO: 130, 134, 138, 142, 146, 150, 154, 158, 162, 166, 170 and/or 174 and in the case of the SK-channel SEQ ID NO:228, 230, 232 if the reduction, repression, decrease or inhibition of its activity mediates a decrease of potassium flux through the membrane.
[0276] In accordance with the invention, a nucleic acid molecule or polynucleotide has the activity of a nucleic acid molecule as depicted in SEQ ID NO: 1, 5, 9, 13, 17, 21, 25 and/or 29, in the case of the shaker channel and/or a Hyperkinetic beta subunit SEQ ID NO: 72, 74, 76, 78, 80, 82, 84 and/or 86, in the case of the G-protein coupled receptor SEQ ID NO: 129, 133, 137, 141, 145, 149, 153, 157, 161, 165, 169 and/or 173 and in the case of the SK-channel SEQ ID NO: 227, 229, 231 if the reduction, repression, decrease or inhibition of its expression mediates a decrease of potassium flux through the membrane.
[0277] Homologues (=homologs) of the polypeptide of the present invention, in particular homologues of a polypeptide which is encoded by or which is comprising a nucleic acid molecule as shown in SEQ ID NO: 1, 5, 9, 13, 17, 21, 25 and/or 29, or a polypeptide comprising the polypeptide, the consensus sequence as shown in SEQ ID NO: 33 and/or 34 respectively' or one or more motifs selected from the group consisting of SEQ ID NO: 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54 and/or 55, and/or 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70 and/or 71 respectively, can be derived from any organisms as long as the homologue confers the herein mentioned activity, i.e. it is a functional equivalent of said molecules.
[0278] In the case of the shaker channel and/or a Hyperkinetic beta subunit, homologues (=homologs) of the polypeptide of the present invention, in particular homologues of a polypeptide which is encoded by or which is comprising a nucleic acid molecule as shown in SEQ ID NO: 72, 74, 76, 78, 80, 82, 84 and/or 86, or a polypeptide comprising the polypeptide, the consensus sequence as shown in SEQ ID NO: 102 and/or 103 respectively or one or more motifs selected from the group consisting of SEQ ID NO: 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124 and/or 125 and/or 126, 127 and/or 128 respectively, can be derived from any organisms as long as the homologue confers the herein mentioned activity, i.e. it is a functional equivalent of said molecules.
[0279] In the case of the G-protein coupled receptor, homologues (=homologs) of the polypeptide of the present invention, in particular homologues of a polypeptide which is encoded by or which is comprising a nucleic acid molecule as shown in SEQ ID NO: 129, 133, 137, 141, 145, 149, 153, 157, 161, 165, 169 and/or 173, or a polypeptide comprising the polypeptide, the consensus sequence as shown in SEQ ID NO: 177, 178 and/or 179 respectively or one or more motifs selected from the group consisting of SEQ ID NO: 180, 181, 182, 183, 184, 185, 186, 187, 188, 189 and/or 190, and/or 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207 and/or 208, and/or 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225 and/or 226 respectively, can be derived from any organisms as long as the homologue confers the herein mentioned activity, i.e. it is a functional equivalent of said molecules.
[0280] In the case of the SK-channel, homologues (=homologs) of the polypeptide of the present invention, in particular homologues of a polypeptide which is encoded by or which is comprising a nucleic acid molecule as shown in SEQ ID NO: 227, 229, 231, or a polypeptide comprising the polypeptide, the consensus sequence as shown in SEQ ID NO: 239 or one or more motifs selected from the group consisting of SEQ ID NO: 240, 241, 242, 243, 244, 245, 246, 247, 248, 249, 250, 251, 252 and 253, can be derived from any organisms as long as the homologue confers the herein mentioned activity, i.e. it is a functional equivalent of said molecules.
[0281] Further, according to the present invention, the term "homologue" relates to the sequence of an organism having preferably the highest or essentially the highest sequence homology to the herein mentioned or listed sequences of all expressed sequences of said organism.
[0282] The person skilled in the art knows how to find, identify and confirm, that a putative homologue has the same activity as described herein. If known, the biological function or activity in an organism essentially relates or corresponds to the activity or function as described for the genes mentioned in SEQ ID NO: 1, 5, 9, 13, 17, 21, 25 and/or 29, in the case of the shaker channel and/or a Hyperkinetic beta subunit SEQ ID NO: 72, 74, 76, 78, 80, 82, 84 and/or 86, in the case of the G-protein coupled receptor SEQ ID NO: 129, 133, 137, 141, 145, 149, 153, 157, 161, 165, 169 and/or 173, and in the case of the SK-channel SEQ ID NO: 227, 229, 231.
[0283] Accordingly, in one embodiment, the homologue or the functional equivalent comprises the sequence of a polypeptide encoded by a nucleic acid molecule comprising a sequence indicated in SEQ ID NO: 1, 5, 9, 13, 17, 21, 25 and/or 29 or a polypeptide sequence as depicted in SEQ ID NO: 2, 6, 10, 14, 18, 22, 26 and/or 30, a consensus sequence as shown in SEQ ID NO: 33 and/or 34 respectively or one or more motifs selected from the group consisting of SEQ ID NO: 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54 and/or 55, and/or 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70 and/or 71 respectively or it is the expression product of a nucleic acid molecule comprising a polynucleotide indicated in SEQ ID NO: 2, 6, 10, 14, 18, 22, 26 and/or 30.
[0284] In the case of the shaker channel and/or a Hyperkinetic beta subunit, accordingly, in one embodiment, the homologue or the functional equivalent comprises the sequence of a polypeptide encoded by a nucleic acid molecule comprising a sequence indicated in SEQ ID NO: 72, 74, 76, 78, 80, 82, 84 and/or 86 or a polypeptide sequence as depicted in SEQ ID NO: 73, 75, 77, 79, 81, 83, 85 and/or 87, a consensus sequence as shown in SEQ ID NO: 102 and/or 103 respectively or one or more motifs selected from the group consisting of SEQ ID NO: 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124 and/or 125 and/or 126, 127 and/or 128 respectively or it is the expression product of a nucleic acid molecule cornprising a polynucleotide indicated in SEQ ID NO: 73, 75, 77, 79, 81, 83, 85 and/or 87.
[0285] In the case of the G-protein coupled receptor, accordingly, in one embodiment, the homologue or the functional equivalent comprises the sequence of a polypeptide encoded by a nucleic acid molecule comprising a sequence indicated in SEQ ID NO: 129, 133, 137, 141, 145, 149, 153, 157, 161, 165, 169 and/or 173 or a polypeptide sequence as depicted in SEQ ID NO: 130, 134, 138, 142, 146, 150, 154, 158, 162, 166, 170 and/or 174, a consensus sequence as shown in SEQ ID NO: 177, 178 and/or 179 respectively or one or more motifs selected from the group consisting of SEQ ID NO: 180, 181, 182, 183, 184, 185, 186, 187, 188, 189 and/or 190, and/or 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207 and/or 208, and/or 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225 and/or 226 respectively or it is the expression product of a nucleic acid molecule comprising a polynucleotide indicated in SEQ ID NO: 130, 134, 138, 142, 146, 150, 154, 158, 162, 166, 170 and/or 174.
[0286] In the case of the SK-channel, accordingly, in one embodiment, the homologue or the functional equivalent comprises the sequence of a polypeptide encoded by a nucleic acid molecule comprising a sequence indicated in SEQ ID NO: 227, 229, 231 or a polypeptide sequence as depicted in SEQ ID NO: 228, 230, 232, a consensus sequence as shown in SEQ ID NO: 239 or one or more motifs selected from the group consisting of SEQ ID NO: 240, 241, 242, 243, 244, 245, 246, 247, 248, 249, 250, 251, 252 and 253 or it is the expression product of a nucleic acid molecule comprising a polynucleotide indicated in SEQ ID NO: 228, 230, 232.
[0287] The herein disclosed information about sequence, activity, consensus sequence, polypeptide motifs and tests leads the person skilled in the art to the respective homologous or functional equivalent expression product in an organism.
[0288] In one embodiment, the homolog of any one of the polypeptides of the invention is derived from an insect and has a sequence identity of at least 50% and preferably has essentially the same or a similar activity of an insect voltage-gated potassium channel Sha1 (Shaker cognate 1 or Shaker-like) and/or its accessory protein KChIP (potassium channel-interacting protein) respectively.
[0289] In another embodiment, the homolog of any one of the polypeptides of the invention is derived from an insect and has a sequence identity of at least 50% and preferably has essentially the same or a similar activity of a Shaker channel and/or a Hyperkinetic beta subunit, preferably H-kv beta subunit A or C subtype respectively.
[0290] In another embodiment, the homolog of any one of the polypeptides of the invention is derived from an insect and has a sequence identity of at least 50% and preferably has essentially the same or a similar activity of a octopamine receptor selected from the group consisting of oa2, preferably from Drosophila melanogaster, Oamb, Oct-beta-2R and Oct-beta-3R.
[0291] In a further embodiment, the homolog of any one of the polypeptides of the invention is derived from an insect and has a sequence identity of at least 50% and preferably has essentially the same or a similar activity of an insect small-conductance Ca2+-activated potassium channel.
[0292] In one embodiment, the homolog of any one of the polypeptides of the invention is derived from a insect, preferably from a insect selected from the group consisting of Pterygota, Neopetra, Hemiptera, Lepidoptera, Coleoptera, Diptera, Homoptera, Tenebrionoidea, Tenebrionidae, Tenebrio, Sternorrhyncha, Aphidina, Brachycera, Drosophilidae, Drosophilinae and Drosophila and has a sequence identity of at least 50% and preferably has essentially the same or a essentially similar activity of
[0293] i) an insect voltage-gated potassium channel Sha1 (Shaker cognate 1 or Shaker-like) and/or its accessory protein KChIP (potassium channel-interacting protein) respectively, or
[0294] ii) a Shaker channel and/or a Hyperkinetic beta subunit, preferably H-kv beta subunit A or C subtype respectively, or
[0295] iii) a octopamine receptor selected from the group consisting of oa2, preferably from Drosophila melanogaster, Oamb, Oct-beta-2R and Oct-beta-3R, or
[0296] iv) an insect small-conductance Ca2+-activated potassium channel.
[0297] In one embodiment, the homolog of any one of the polypeptides of the invention is derived from
[0298] i) Drosophila melanogaster, southern armyworm, tribolium, brown plant hopper, or
[0299] ii) Drosophila melanogaster, southern armyworm, tribolium, green peach aphid, cotton aphid and/or black bean aphid, or
[0300] iii) Drosophila melanogaster, southern armyworm (Spodoptera eridania), Red Fluor Beetle (Tribolium castaneum), Green Peach Aphid (Myzus persicae), and Silverleaf Whitefly (Bemisia argentifolii), or
[0301] iv) a insect, preferably from a insect selected from the group consisting of Pterygota, Neopetra, Hemiptera, Lepidoptera, Coleoptera, Diptera, Homoptera, Tenebrionoidea, Tenebrionidae, Tenebrio, Sternorrhyncha, Aphidina, Brachycera, Drosophilidae, Drosophilinae and Drosophila and has a sequence identity of at least 50% and preferably has essentially the same or a essentially similar activity of an insect small-conductance Ca2+-activated potassium channel.
[0302] The functional equivalent or homologs of the polypeptide of the invention have the activity of
[0303] i) an insect voltage-gated potassium channel Sha1 (Shaker cognate 1 or Shaker-like) and/or its accessory protein KChIP (potassium channel-interacting protein) respectively, or
[0304] ii) an insect Shaker channel and/or a Hyperkinetic beta subunit, preferably H-kv beta subunit A or C subtype respectively, or
[0305] iii) an insect octopamine receptor selected from the group consisting of oa2, preferably from Drosophila melanogaster, Oamb, Oct-beta-2R and Oct-beta-3R, or
[0306] iv) an insect small-conductance Ca2+-activated potassium channel
[0307] and an amino acid sequence that has at least an identity of 55%, 56%, 57%, 58%, 59%, 60%, 61%, 62% or 63% preferably at least, 64%, 65%, 66%, 67%, 68% or 69% more preferably at least 70%, 71%, 72%, 73%, 74%, 75%, 76%, 77%, 78%, 79%, 80%, 81%, 82%, 83%, 84% or 85% most preferably 86%, 87%, 88%, 89% or 90% especially preferably at least 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98% or 99% identity with a polypeptide as shown in the sequences selected from the group consisting of SEQ ID NO: 2, 6, 10, 14, 18, 22, 26 and/or 30, in the case of the shaker channel and/or a Hyperkinetic beta subunit SEQ ID NO: 73, 75, 77, 79, 81, 83, 85 and/or 87, in the case of the G-protein coupled receptor SEQ ID NO: 130, 134, 138, 142, 146, 150, 154, 158, 162, 166, 170 and/or 174, and in the case of the SK-channel SEQ ID NO: 228, 230, 232.
[0308] "Functional equivalents" describe, in the present context, nucleic acid sequences which hybridize under standard conditions with the nucleic acid sequence encoding a polypeptide with the biological activity of
[0309] i) an insect voltage-gated potassium channel Sha1 (Shaker cognate 1 or Shaker-like) and/or its accessory protein KChIP (potassium channel-interacting protein) respectively, or
[0310] ii) an insect Shaker channel and/or a Hyperkinetic beta subunit, preferably H-kv beta subunit A or C subtype respectively, or
[0311] iii) an octopamine receptor selected from the group consisting of oa2, preferably from Drosophila melanogaster, Oamb, Oct-beta-2R and Oct-beta-3R, or
[0312] iv) an insect small-conductance Ca2+-activated potassium channel
[0313] or parts of the aforementioned nucleic acid sequence, which are capable of bringing about the expression, in a cell or an organism, of a polypeptide with the biological activity of a of
[0314] i) an insect voltage-gated potassium channel Sha1 (Shaker cognate 1 or Shaker-like) and/or its accessory protein KChIP (potassium channel-interacting protein) respectively, or
[0315] ii) an insect Shaker channel and/or a Hyperkinetic beta subunit, preferably H-kv beta subunit A or C subtype respectively, or
[0316] iii) an insect octopamine receptor selected from the group consisting of oa2, preferably from Drosophila melanogaster, Oamb, Oct-beta-2R and Oct-beta-3R, or
[0317] iv) an insect small-conductance Ca2+-activated potassium channel.
[0318] To carry out the hybridization, it is advantageous to use short oligonucleotides with a length of approximately 10-50 bp, preferably 15-40 bp, for example of the conserved or other regions, which can be determined in the manner with which the skilled worker is familiar by comparisons with other related genes. However, longer fragments of the nucleic acids according to the invention with a length of 100-500 bp, or the complete sequences, may also be used for hybridization. Depending on the nucleic acid/oligonucleotide used, the length of the fragment or the complete sequence, or depending on which type of nucleic acid, i.e. DNA or RNA, is being used for the hybridization, these standard conditions vary. Thus, for example, the melting temperatures for DNA:DNA hybrids are approximately 10° C. lower than those of DNA:RNA hybrids of the same length.
[0319] Standard hybridization conditions are to be understood as meaning, depending on the nucleic acid, for example temperatures of between 42 and 58° C. in an aqueous buffer solution with a concentration of between 0.1 to 5×SSC (1×SSC=0.15 M NaCl, 15 mM sodium citrate, pH 7.2) or additionally in the presence of 50% formamide, such as, for example, 42° C. in 5×SSC, 50% formamide. The hybridization conditions for DNA:DNA hybrids are advantageously 0.1×SSC and temperatures of between approximately 20° C. and 65° C., preferably between approximately 30° C. and 45° C. In the case of DNA:RNA hybrids, the hybridization conditions are advantageously 0.1×SSC and temperatures of between approximately 30° C. and 65° C., preferably between approximately 45° C. and 55° C. These hybridization temperatures which have been stated are melting temperature values which have been calculated by way of example for a nucleic acid with a length of approx. 100 nucleotides and a G+C content of 50% in the absence of formamide. The experimental conditions for DNA hybridization are described in specialist textbooks of genetics such as, for example, in Sambrook et al., "Molecular Cloning", Cold Spring Harbor Laboratory, 1989, and can be calculated using formulae with which the skilled worker is familiar, for example as a function of the length of the nucleic acids, the type of the hybrids or the G+C content. The skilled worker will find further information on hybridization in the following textbooks: Ausubel et al. (eds), 1985, Current Protocols in Molecular Biology, John Wiley & Sons, New York; Hames and Higgins (eds), 1985, Nucleic Acids Hybridization: A Practical Approach, IRL Press at Oxford University Press, Oxford; Brown (ed), 1991, Essential Molecular Biology: A Practical Approach, IRL Press at Oxford University Press, Oxford. A functional equivalent is furthermore also understood as meaning in particular natural or artificial mutations of the respective nucleic acid sequences of the protein encoded by the nucleic acid sequences according to the invention and their homologs from other organisms.
[0320] Thus, the present invention also encompasses, for example, those nucleotide sequences which are obtained by modification of the nucleic acid sequence of SEQ ID NO: 1, 5, 9, 13, 17, 21, 25 and/or 29, in the case of the shaker channel and/or a Hyperkinetic beta subunit SEQ ID NO: 72, 74, 76, 78, 80, 82, 84 and/or 86, in the case of the G-protein coupled receptor SEQ ID NO: 129, 133, 137, 141, 145, 149, 153, 157, 161, 165, 169 and/or 173, and in the case of the SK-channel SEQ ID NO: 227, 229, 231. For example, such modifications can be generated by techniques with which the skilled worker is familiar, such as "Site Directed Mutagenesis", "Error Prone PCR", "DNA shuffling" (Nature 370, 1994, pp. 389-391) or "Staggered Extension Process" (Nature Biotechnol. 16, 1998, pp. 258-261). The purpose of such a modification can be, for example, the insertion of further cleavage sites for restriction enzymes, the removal of DNA in order to truncate the sequence, the substitution of nucleotides to optimize the codons, or the addition of further sequences. Proteins which are encoded via modified nucleic acid sequences must retain the desired functions despite a deviating nucleic acid sequence, which is the biological activity of
[0321] i) an insect voltage-gated potassium channel Sha1 (Shaker cognate 1 or Shaker-like) and/or its accessory protein KChIP (potassium channel-interacting protein) respectively, or
[0322] ii) an insect Shaker channel and/or a Hyperkinetic beta subunit, preferably H-kv beta subunit A or C subtype respectively, or
[0323] iii) an insect octopamine receptor selected from the group consisting of oa2, preferably from Drosophila melanogaster, Oamb, Oct-beta-2R and Oct-beta-3R, or
[0324] iv) an insect small-conductance Ca2+-activated potassium channel.
[0325] Functional equivalents thus comprise naturally occurring variants of the herein-described sequences and artificial nucleic acid sequences, for example those which have been obtained by chemical synthesis and which are adapted to the codon usage, and also the amino acid sequences derived from them.
[0326] Nucleic acid molecules corresponding to natural variant homologues of the nucleic acid molecule comprising a polynucleotide shown in SEQ ID NO: 2, 6, 10, 14, 18, 22, 26 and/or 30, in the case of the shaker channel and/or a Hyperkinetic beta subunit SEQ ID NO: 73, 75, 77, 79, 81, 83, 85 and/or 87, in the case of the G-protein coupled receptor SEQ ID NO: 130, 134, 138, 142, 146, 150, 154, 158, 162, 166, 170 and/or 174, and in the case of the SK-channel SEQ ID NO: 228, 230, 232, such as the nucleic acid molecule of the invention, and which can also be a cDNA, can be isolated based on their homology to the nucleic acid molecules disclosed herein using the nucleic acid molecule shown in SEQ ID NO: 1, 5, 9, 13, 17, 21, 25 and/or 29, in the case of the shaker channel and/or a Hyperkinetic beta subunit SEQ ID NO: 72, 74, 76, 78, 80, 82, 84 and/or 86, in the case of the G-protein coupled receptor SEQ ID NO: 129, 133, 137, 141, 145, 149, 153, 157, 161, 165, 169 and/or 173, and in the case of the SK-channel SEQ ID NO: 227, 229, 231, e.g. the nucleic acid molecule of the invention, or a fragment thereof, as a hybridization probe according to standard hybridization techniques under stringent hybridization conditions.
[0327] Nucleic acid molecules which are advantageously for the process according to the invention can be isolated based on their homology to the nucleic acid molecules disclosed herein using the sequences or part thereof as hybridization probe and following standard hybridization techniques under stringent hybridization conditions.
[0328] The term "homology" means that the respective nucleic acid molecules or encoded proteins are functionally and/or structurally equivalent. The nucleic acid molecules that are homologous to the nucleic acid molecules described above and that are derivatives of said nucleic acid molecules are, for example, variations of said nucleic acid molecules which represent modifications having the same biological function, in particular encoding proteins with the same or substantially the same biological function. They may be naturally occurring variations, such as sequences from other plant varieties or species, or mutations. These mutations may occur naturally or may be obtained by mutagenesis techniques. The allelic variations may be naturally occurring allelic variants as well as synthetically produced or genetically engineered variants. Structural equivalents can for example be identified by testing the binding of said polypeptide to antibodies or computer based predictions. Structural equivalents have the similar immunological characteristic, e.g. comprise similar epitopes.
[0329] By "hybridizing" it is meant that such nucleic acid molecules hybridize under conventional hybridization conditions, preferably under stringent conditions such as described by, e.g., Sambrook (Molecular Cloning; A Laboratory Manual, 2nd Edition, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y. (1989)) or in Current Protocols in Molecular Biology, John Wiley & Sons, N. Y. (1989), 6.3.1-6.3.6.
[0330] According to the invention, DNA as well as RNA molecules of the nucleic acid of the invention can be used as probes. Further, as template for the identification of functional homologues Northern blot assays as well as Southern blot assays can be performed. The Northern blot assay advantageously provides further information about the expressed gene product: e.g. expression pattern, occurrence of processing steps, like splicing and capping, etc. The Southern blot assay provides additional information about the chromosomal localization and organization of the gene encoding the nucleic acid molecule of the invention.
[0331] A preferred, nonlimiting example of stringent Southern blot hydridization conditions are hybridizations in 6× sodium chloride/sodium citrate (=SSC) at approximately 45° C., followed by one or more wash steps in 0.2×SSC, 0.1% SDS at 50 to 65° C., for example at 50° C., 55° C. or 60° C. The skilled worker knows that these hybridization-conditions differ as a function of the type of the nucleic acid and, for example when organic solvents are present, with regard to the temperature and concentration of the buffer. The temperature under "standard hybridization conditions" differs for example as a function of the type of the nucleic acid between 42° C. and 58° C., preferably between 45° C. and 50° C. in an aqueous buffer with a concentration of 0.1×0.5×, 1×, 2×, 3×, 4× or 5×SSC (pH 7.2). If organic solvent(s) is/are present in the abovementioned buffer, for example 50% formamide, the temperature under standard conditions is approximately 40° C., 42° C. or 45° C. The hybridization conditions for DNA:DNA hybrids are preferably for example 0.1×SSC and 20° C., 25° C., 30° C., 35° C., 40° C. or 45° C., preferably between 30° C. and 45° C. The hybridization conditions for DNA:RNA hybrids are preferably for example 0.1.×SSC and 30° C., 35° C., 40° C., 45° C., 50° C. or 55° C., preferably between 45° C. and 55° C. The abovementioned hybridization temperatures are determined for example for a nucleic acid approximately 100 bp (=base pairs) in length and a G+C content of 50% in the absence of formamide. The skilled worker knows to determine the hybridization conditions required with the aid of textbooks, for example the ones mentioned above, or from the following textbooks: Sambrook et al., "Molecular Cloning", Cold Spring Harbor Laboratory, 1989; Hames and Higgins (Ed.) 1985, "Nucleic Acids Hybridization: A Practical Approach", IRL Press at Oxford University Press, Oxford; Brown (Ed.) 1991, "Essential Molecular Biology: A Practical Approach", IRL Press at Oxford University Press, Oxford.
[0332] A further example of one such stringent hybridization condition is hybridization at 4×SSC at 65° C., followed by a washing in 0.1×SSC at 65° C. for one hour. Alternatively, an exemplary stringent hybridization condition is in 50% formamide, 4×SSC at 42° C. Further, the conditions during the wash step can be selected from the range of conditions delimited by low-stringency conditions (approximately 2×SSC at 50° C.) and high-stringency conditions (approximately 0.2×SSC at 50° C., preferably at 65° C.) (20×SSC: 0.3M sodium citrate, 3M NaCl, pH 7.0). In addition, the temperature during the wash step can be raised from low-stringency conditions at room temperature, approximately 22° C., to higher-stringency conditions at approximately 65° C.
[0333] Both of the parameters salt concentration and temperature can be varied simultaneously, or else one of the two parameters can be kept constant while only the other is varied. Denaturants, for example formamide or SDS, may also be employed during the hybridization. In the presence of 50% formamide, hybridization is preferably effected at 42° C. Relevant factors like i) length of treatment, ii) salt conditions, iii) detergent conditions, iv) competitor DNAs, v) temperature and vi) probe selection can combined case by case so that not all possibilities can be mentioned herein.
[0334] Some examples of conditions for DNA hybridization (Southern blot assays) and wash step are shown hereinbelow:
[0335] (1) Hybridization conditions can be selected, for example, from the following conditions:
[0336] a) 4×SSC at 65° C.,
[0337] b) 6×SSC at 45° C.,
[0338] c) 6×SSC, 100 mg/ml denatured fragmented fish sperm DNA at 68° C.,
[0339] d) 6×SSC, 0.5% SDS, 100 mg/ml denatured salmon sperm DNA at 68° C.,
[0340] e) 6×SSC, 0.5% SDS, 100 mg/ml denatured fragmented salmon sperm DNA, 50% formamide at 42° C.,
[0341] f) 50% formamide, 4×SSC at 42° C.,
[0342] g) 50% (vol/vol) formamide, 0.1% bovine serum albumin, 0.1% Ficoll, 0.1% polyvinylpyrrolidone, 50 mM sodium phosphate buffer pH 6.5, 750 mM NaCl, 75 mM sodium citrate at 42° C.,
[0343] h) 2× or 4×SSC at 50° C. (low-stringency condition), or
[0344] i) 30 to 40% formamide, 2× or 4×SSC at 42° C. (low-stringency condition).
[0345] (2) Wash steps can be selected, for example, from the following conditions:
[0346] a) 0.015 M NaCl/0.0015 M sodium citrate/0.1% SDS at 50° C.
[0347] b) 0.1×SSC at 65° C.
[0348] c) 0.1×SSC, 0.5% SDS at 68° C.
[0349] d) 0.1×SSC, 0.5% SDS, 50% formamide at 42° C.
[0350] e) 0.2×SSC, 0.1% SDS at 42° C.
[0351] f) 2×SSC at 65° C. (low-stringency condition).
[0352] g) 0.2×SSC, 0.1% S DS at 60° C. (medium-high stringency conditions), or
[0353] h) 0.1×SSC, 0.1% S DS at 60° C. (medium-high stringency conditions), or
[0354] i) 0.2×SSC, 0.1% S DS at 65° C. (high stringency conditions), or
[0355] h) 0.1×SSC, 0.1% S DS at 65° C. (high stringency conditions).
[0356] In one embodiment, the term "hybridizes under stringent conditions" is intended to describe conditions for hybridization and washing under which nucleotide sequences of at least 30%, 40%, 50% or 65% identical to each other typically remain hybridized to each other. Preferably, the conditions are such that sequences of at least about 70%, more preferably at least about 75% or 80%, and even more preferably of at least about 85%, 90% or 95% or more identical to each other typically remain hybridized to each other.
[0357] In one embodiment the nucleic acid molecule of the invention hybridizes under stringent conditions to a sequence shown in SEQ ID NO: 1, 5, 9, 13, 17, 21, 25 and/or 29, in the case of the shaker channel and/or a Hyperkinetic beta subunit SEQ ID NO: 72, 74, 76, 78, 80, 82, 84 and/or 86, in the case of the G-protein coupled receptor SEQ ID NO: 129, 133, 137, 141, 145, 149, 153, 157, 161, 165, 169 and/or 173, and in the case of the SK-channel SEQ ID NO: 227, 229, 231 and corresponds to a naturally-occurring nucleic acid molecule. As used herein, a "naturally-occurring" nucleic acid molecule refers to a RNA or DNA molecule having a nucleotide sequence that occurs in nature (e.g., encodes a natural protein).
[0358] In addition to naturally-occurring variants of the nucleic acid or protein sequence that may exist in the population, the skilled artisan will further appreciate that changes can be introduced by mutation into a nucleotide sequence of the nucleic acid molecule encoding the polypeptide, thereby leading to changes in the amino acid sequence of the encoded polypeptide and thereby altering the functional ability of the polypeptide, meaning preferably reducing, decreasing or deleting said activity. For example, nucleotide substitutions leading to amino acid substitutions at "essential" amino acid residues can be made in a sequence of the nucleic acid molecule to be reduced in the process of the invention, e.g. comprising the corresponding nucleic acid molecule as shown in SEQ ID NO: 1, 5, 9, 13, 17, 21, 25 and/or 29, in the case of the shaker channel and/or a Hyperkinetic beta subunit SEQ ID NO: 72, 74, 76, 78, 80, 82, 84 and/or 86, in the case of the G-protein coupled receptor SEQ ID NO: 129, 133, 137, 141, 145, 149, 153, 157, 161, 165, 169 and/or 173, and in the case of the SK-channel SEQ ID NO: 227, 229, 231. An "essential" amino acid residue is a residue that if altered from the wild-type sequence of one of the polypeptide lead to an altered activity of said polypeptide, whereas a "non-essential" amino acid residue is not required for the activity of the protein for example for the activity as an enzyme or channel. The alteration of "essential" residues often lead to a reduced, decreased or deleted activity of the polypeptides. Preferably amino acid of the polypeptide are changed in such a manner that the activity is reduced, decreased or deleted that means preferably essential amino acid residues and/or more non-essential residues are changed and thereby the activity is reduced after decreasing the expression or activity of the polypeptide. Other amino acid residues, however, (e.g., those that are not conserved or only semi-conserved in the domain having said activity) may not be essential for activity and thus are likely to be amenable to alteration without altering said activity are less preferred.
[0359] Preferably, the protein encoded by the nucleic acid molecule is at least about 60%, 70% or 80% identical to the sequence shown in SEQ ID NO: 2, 6, 10, 14, 18, 22, 26 and/or 30 or to a sequence comprising a consensus sequence as shown in SEQ ID NO: 33 and/or 34 respectively or one or more motifs selected from the group consisting of SEQ ID NO: 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54 and/or 55, and/or 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70 and/or 71 respectively, more preferably at least about 85% identical to one of the sequences shown in SEQ ID NO: 2, 6, 10, 14, 18, 22, 26 and/or 30 or to a sequence comprising a consensus sequence as shown in SEQ ID NO: 33 and/or 34 respectively or one or more motifs selected from the group consisting of SEQ ID NO: 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54 and/or 55, and/or 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70 and/or 71 respectively, even more preferably at least about 90%, 91%, 92%, 93%, 94%, 95% homologous to the sequence shown in SEQ ID NO: 2, 6, 10, 14, 18, 22, 26 and/or 30 or to a sequence comprising a consensus sequence as shown in SEQ ID NO: 33 and/or 34 respectively or one or more motifs selected from the group consisting of SEQ ID NO: 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54 and/or 55, and/or 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70 and/or 71 respectively, and most preferably at least about 96%, 97%, 98%, or 99% identical to the sequence shown in SEQ ID NO: 2, 6, 10, 14, 18, 22, 26 and/or 30 or to a sequence comprising a consensus sequence as shown in SEQ ID NO: 33 and/or 34 respectively or one or more motifs selected from the group consisting of SEQ ID NO: 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54 and/or 55, and/or 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70 and/or 71 respectively.
[0360] In the case of the shaker channel and/or a Hyperkinetic beta subunit, preferably, the protein encoded by the nucleic acid molecule is at least about 60%, 70% or 80% identical to the sequence shown in SEQ ID NO: 73, 75, 77, 79, 81, 83, 85 and/or 87 or to a sequence comprising a consensus sequence as shown in SEQ ID NO: 102 and/or 103 respectively or one or more motifs selected from the group consisting of SEQ ID NO: 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124 and/or 125 and/or 126, 127 and/or 128 respectively, more preferably at least about 85% identical to one of the sequences shown in SEQ ID NO: 73, 75, 77, 79, 81, 83, 85 and/or 87 or to a sequence comprising a consensus sequence as shown in SEQ ID NO: 102 and/or 103 respectively or one or more motifs selected from the group consisting of SEQ ID NO: 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124 and/or 125 and/or 126, 127 and/or 128 respectively, even more preferably at least about 90%, 91%, 92%, 93%, 94%, 95% homologous to the sequence shown in SEQ ID NO: 73, 75, 77, 79; 81, 83, 85 and/or 87 or to a sequence comprising a consensus sequence as shown in SEQ ID NO: 102 and/or 103 respectively or one or more motifs selected from the group consisting of SEQ ID NO: 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124 and/or 125 and/or 126, 127 and/or 128 respectively, and most preferably at least about 96%, 97%, 98%, or 99% identical to the sequence shown in SEQ ID NO: 73, 75, 77, 79, 81, 83, 85 and/or 87 or to a sequence comprising a consensus sequence as shown in SEQ ID NO: 102 and/or 103 respectively or one or more motifs selected from the group consisting of SEQ ID NO: 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124 and/or 125 and/or 126, 127 and/or 128 respectively.
[0361] In the case of the G-protein coupled receptor, preferably, the protein encoded by the nucleic acid molecule is at least about 60%, 70% or 80% identical to the sequence shown in SEQ ID NO: 130, 134, 138, 142, 146, 150, 154, 158, 162, 166, 170 and/or 174 or to a sequence comprising a consensus sequence as shown in SEQ ID NO: 177, 178 and/or 179 respectively or one or more motifs selected from the group consisting of SEQ ID NO: 180, 181, 182, 183, 184, 185, 186, 187, 188, 189 and/or 190, and/or 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207 and/or 208, and/or 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225 and/or 226 respectively, more preferably at least about 85% identical to one of the sequences shown in SEQ ID NO: 130, 134, 138, 142, 146, 150, 154, 158, 162, 166, 170 and/or 174 or to a sequence comprising a consensus sequence as shown in SEQ ID NO: 177, 178 and/or 179 respectively or one or more motifs selected from the group consisting of SEQ ID NO: 180, 181, 182, 183, 184, 185, 186, 187, 188, 189 and/or 190, and/or 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207 and/or 208, and/or 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225 and/or 226 respectively, even more preferably at least about 90%, 91%, 92%, 93%, 94%, 95% homologous to the sequence shown in SEQ ID NO: 130, 134, 138, 142, 146, 150, 154, 158, 162, 166, 170 and/or 174 or to a sequence comprising a consensus sequence as shown in SEQ ID NO: 177, 178 and/or 179 respectively or one or more motifs selected from the group consisting of SEQ ID NO: 180, 181, 182, 183, 184, 185, 186, 187, 188, 189 and/or 190, and/or 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207 and/or 208, and/or 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225 and/or 226 respectively, and most preferably at least about 96%, 97%, 98%, or 99% identical to the sequence shown in SEQ ID NO: 130, 134, 138, 142, 146, 150, 154, 158, 162, 166, 170 and/or 174 or to a sequence comprising a consensus sequence as shown in SEQ ID NO: 177, 178 and/or 179 respectively or one or more motifs selected from the group consisting of SEQ ID NO: 180, 181, 182, 183, 184, 185, 186, 187, 188, 189 and/or 190, and/or 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207 and/or 208, and/or 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225 and/or 226 respectively.
[0362] In the case of the SK-channel, preferably, the protein encoded by the nucleic acid molecule is at least about 60%, 70% or 80% identical to the sequence shown in SEQ ID NO: 228, 230, 232 or to a sequence comprising a consensus sequence as shown in SEQ ID NO: 239 or one or more motifs selected from the group consisting of SEQ ID NO: 240, 241, 242, 243, 244, 245, 246, 247, 248, 249, 250, 251, 252 and 253, more preferably at least about 85% identical to one of the sequences shown in SEQ ID NO: 228, 230, 232 or to a sequence comprising a consensus sequence as shown in SEQ ID NO: 239 or one or more motifs selected from the group consisting of SEQ ID NO: 240, 241, 242, 243, 244, 245, 246, 247, 248, 249, 250, 251, 252 and 253, even more preferably at least about 90%, 91%, 92%, 93%, 94%, 95% homologous to the sequence shown in SEQ ID NO: 228, 230, 232 or to a sequence comprising a consensus sequence as shown in SEQ ID NO: 239 or one or more motifs selected from the group consisting of SEQ ID NO: 240, 241, 242, 243, 244, 245, 246, 247, 248, 249, 250, 251, 252 and 253, and most preferably at least about 96%, 97%, 98%, or 99% identical to the sequence shown in SEQ ID NO: 228, 230, 232 or to a sequence comprising a consensus sequence as shown in SEQ ID NO: 239 or one or more motifs selected from the group consisting of SEQ ID NO: 240, 241, 242, 243, 244, 245, 246, 247, 248, 249, 250, 251, 252 and 253.
[0363] To determine the percentage homology (=identity) of two amino acid sequences or of two nucleic acid molecules, the sequences are written one underneath the other for an optimal comparison. Gaps may be inserted into the sequence of a protein or of a nucleic acid molecule in order to generate an optimal alignment with the other protein or the other nucleic acid. The amino acid residue or nucleotide at the corresponding amino acid position or nucleotide position is then compared between both polymers. If a position in one sequence is occupied by the same amino acid residue or the same nucleotide as in the corresponding position of the other sequence, the molecules are identical at this position. Amino acid or nucleotide "identity" as used in the present context corresponds to amino acid or nucleic acid "homology". Generally the percentage homology between the two sequences is a function of the number of identical positions shared by the sequences (i.e. % homology=number of identical positions/total number of positions×100). The terms "homology" and "identity" are thus to be considered as synonyms for this description.
[0364] For the determination of the percentage homology (=identity) of two or more amino acid or of two or more nucleotide sequences several computer software programs have been developed. The homology of two or more sequences can be calculated with for example the software fasta, which presently has been used in the version fasta 3 (W. R. Pearson and D. J. Lipman (1988), Improved Tools for Biological Sequence Comparison.PNAS 85:2444-2448; W. R. Pearson (1990) Rapid and Sensitive Sequence Comparison with FASTP and FASTA, Methods in Enzymology 183:63-98; W. R. Pearson and D. J. Lipman (1988) Improved Tools for Biological Sequence Comparison.PNAS 85:2444-2448; W. R. Pearson (1990); Rapid and Sensitive Sequence Comparison with FASTP and FASTAMethods in Enzymology 183:63-98). Another useful program for the calculation of homologies of different sequences is the standard blast program, which is included in the Biomax pedant software (Biomax, Munich, Federal Republic of Germany). This leads unfortunately sometimes to suboptimal results since blast does not always include complete sequences of the subject and the query. Nevertheless as this program is very efficient it can be used for the comparison of a huge number of sequences. The following settings are typically used for such a comparisons of sequences: -p Program Name [String]; -d Database [String]; default=nr; -i Query File [File In]; default=stdin; -e Expectation value (E) [Real]; default=10.0; -m alignment view options: 0=pairwise; 1=query-anchored showing identities; 2=query-anchored no identities; 3=flat query-anchored, show identities; 4=flat query-anchored, no identities; 5=query-anchored no identities and blunt ends; 6=flat query-anchored, no identities and blunt ends; 7=XML Blast output; 8=tabular; 9 tabular with comment lines [Integer]; default=0; -o BLAST report Output File [File Out] Optional; default=stdout; -F Filter query sequence (DUST with blastn, SEG with others) [String]; default=T; -G Cost to open a gap (zero invokes default behavior) [Integer]; default=0; -E Cost to extend a gap (zero invokes default behavior) [Integer]; default=0; -X X dropoff value for gapped alignment (in bits) (zero invokes default behavior); blastn 30, megablast 20, tblastx 0, all others 15 [Integer]; default=0; -I Show GI's in defines [T/F]; default=F; -q Penalty for a nucleotide mismatch (blastn only) [Integer]; default=-3; -r Reward for a nucleotide match (blastn only) [Integer]; default=1; -v Number of database sequences to show one-line descriptions for (V) [Integer]; default=500; -b Number of database sequence to show alignments for (B) [Integer]; default=250; -f Threshold for extending hits, default if zero; blastp 11, blastn 0, blastx 12, tblastn 13; tblastx 13, megablast 0 [Integer]; default=0; -g Perform gapped alignment (not available with tblastx) [T/F]; default=T; -Q Query Genetic code to use [Integer]; default=1; -D DB Genetic code (for tblast[nx] only) [Integer]; default=1; -a Number of processors to use [Integer]; default=1; -O SeqAlign file [File Out] Optional; -J Believe the query defline [T/F]; default=F; -M Matrix [String]; default=BLOSUM62; -W Word size, default if zero (blastn 11, megablast 28, all others 3) [Integer]; default=0; -z Effective length of the database (use zero for the real size) [Real]; default=0; -K Number of best hits from a region to keep (off by default, if used a value of 100 is recommended) [Integer]; default=0; -P 0 for multiple hit, 1 for single hit [Integer]; default=0; -Y Effective length of the search space (use zero for the real size) [Real]; default=0; -S Query strands to search against database (for blast[nx], and tblastx); 3 is both, 1 is top, 2 is bottom [Integer]; default=3; -T Produce HTML output [T/F]; default=F; -1 Restrict search of database to list of GI's [String] Optional; -U Use lower case filtering of FASTA sequence [T/F] Optional; default=F; -y X dropoff value for ungapped extensions in bits (0.0 inyokes default behavior); blastn 20, megablast 10, all others 7 [Real]; default=0.0; -Z X dropoff value for final gapped alignment in bits (0.0 invokes default behavior); blastn/megablast 50, tblastx 0, all others 25 [Integer]; default=0; -R PSI-TBLASTN checkpoint file [File In] Optional; -n MegaBlast search [T/F]; default=F; -L Location on query sequence [String] Optional; -A Multiple Hits window size, default if zero (blastn/megablast 0, all others 40 [Integer]; default=0; -w Frame shift penalty (OOF algorithm for blastx) [Integer]; default=0; -t Length of the largest intron allowed in tblastn for linking HSPs (0 disables linking) [Integer]; default=0.
[0365] Results of high quality are reached by using the algorithm of Needleman and Wunsch or Smith and Waterman. Therefore programs based on said algorithms are preferred. Advantageously the comparisons of sequences can be done with the program PileUp (J. Mol. Evolution., 25, 351-360, 1987, Higgins et al., CABIOS, 5 1989: 151-153) or preferably with the programs Gap and BestFit, which are respectively based on the algorithms of Needleman and Wunsch [J. Mol. Biol. 48; 443-453 (1970)] and Smith and Waterman [Adv. Appl. Math. 2; 482-489 (1981)]. Both programs are part of the GCG software-package [Genetics Computer Group, 575 Science Drive, Madison, Wis., USA 53711 (1991); Altschul et al. (1997) Nucleic Acids Res. 25:3389 et seq.]. Therefore preferably the calculations to determine the perentages of sequence homology are done with the program Gap over the whole range of the sequences. The following standard adjustments for the comparison of nucleic acid sequences were used: gap weight: 50, length weight: 3, average match: 10.000, average mismatch: 0.000.
[0366] For example a sequence which has a 80% homology with sequence shown in SEQ ID NO.: 1 at the nucleic acid level is understood as meaning a sequence which, upon comparison with the sequence SEQ ID NO: 1 by the above Gap program algorithm with the above parameter set, has 80% homology.
[0367] Homology between two polypeptides is understood as meaning the identity of the amino acid sequence over in each case the entire sequence length which is calculated by comparison with the aid of the program algorithm Gap (Wisconsin Package Version 10.0, University of Wisconsin, Genetics Computer Group (GCG), Madison, USA), setting the following parameters: gap weight: 8; length weight: 2; average match: 2.912; average mismatch: -2.003.
[0368] For example a sequence which has a 80% homology with sequence SEQ ID NO: 2 at the protein level is understood as meaning a sequence which, upon comparison with the sequence SEQ ID NO: 2 by the above Gap program algorithm with the above parameter set, has 80% homology.
[0369] Functional equivalents derived from one of the polypeptides as shown in SEQ ID NO: 2, 6, 10, 14, 18, 22, 26 and/or 30 or comprising the consensus sequence as shown in SEQ ID NO: 33 and/or 34 respectively or one or more motifs selected from the group consisting of SEQ ID NO: 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54 and/or 55, and/or 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70 and/or 71 respectively according to the invention by substitution, insertion or deletion have at least 30%, 35%, 40%, 45% or 50%, preferably at least 55%, 60%, 65% or 70% by preference at least 80%, especially preferably at least 85% or 90%, 91%, 92%, 93% or 94%, very especially preferably at least 95%, 97%, 98% or 99% homology with one of the polypeptides as shown in SEQ ID NO: 2, 6, 10, 14, 18, 22, 26 and/or 30 or with one of the polypeptides comprising a consensus sequence as shown in SEQ ID NO: 33 and/or 34 respectively or one or more motifs selected from the group consisting of SEQ ID NO: 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54 and/or 55, and/or 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70 and/or 71 respectively and are distinguished by essentially the same properties as the polypeptide as shown in SEQ ID NO: 2, 6, 10, 14, 18, 22, 26 and/or 30.
[0370] Functional equivalents derived from the nucleic acid sequence as shown in SEQ ID NO: 1, 5, 9, 13, 17, 21, 25 and/or 29 according to the invention by substitution, insertion or deletion have at least 30%, 35%, 40%, 45% or 50%, preferably at least 55%, 60%, 65% or 70% by preference at least 80%, especially preferably at least 85% or 90%, 91%, 92%, 93% or 94%, very especially preferably at least 95%, 97%, 98% or 99% homology with one of the nucleic acids as shown in SEQ ID NO: 1, 5, 9, 13, 17, 21, 25 and/or 29 according to the invention and encode polypeptides having essentially the same properties as the polypeptide as shown in SEQ ID NO: 2, 6, 10, 14, 18, 22, 26 and/or 30.
[0371] In the case of the shaker channel and/or a Hyperkinetic beta subunit, functional equivalents derived from one of the polypeptides as shown in SEQ ID NO: 73, 75, 77, 79, 81, 83, 85 and/or 87 or comprising the consensus sequence as shown in SEQ ID NO: 102 and/or 103 respectively or one or more motifs selected from the group consisting of SEQ ID NO: 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124 and/or 125 and/or 126, 127 and/or 128 respectively according to the invention by substitution, insertion or deletion have at least 30%, 35%, 40%, 45% or 50%, preferably at least 55%, 60%, 65% or 70% by preference at least 80%, especially preferably at least 85% or 90%, 91%, 92%, 93% or 94%, very especially preferably at least 95%, 97%, 98% or 99% homology with one of the polypeptides as shown in SEQ ID NO: 73, 75, 77, 79, 81, 83, 85 and/or 87 or with one of the polypeptides comprising a consensus sequence as shown in SEQ ID NO: 102 and/or 103 respectively or one or more motifs selected from the group consisting of SEQ ID NO: 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124 and/or 125 and/or 126, 127 and/or 128 respectively and are distinguished by essentially the same properties as the polypeptide as shown in SEQ ID NO: 73, 75, 77, 79, 81, 83, 85 and/or 87.
[0372] In the case of the shaker channel and/or a Hyperkinetic beta subunit, functional equivalents derived from the nucleic acid sequence as shown in SEQ ID NO: 72, 74, 76, 78, 80, 82, 84 and/or 86 according to the invention by substitution, insertion or deletion have at least 30%, 35%, 40%, 45% or 50%, preferably at least 55%, 60%, 65% or 70% by preference at least 80%, especially preferably at least 85% or 90%, 91%, 92%, 93% or 94%, very especially preferably at least 95%, 97%, 98% or 99% homology with one of the nucleic acids as shown in SEQ ID NO: 72, 74, 76, 78, 80, 82, 84 and/or 86 according to the invention and encode polypeptides having essentially the same properties as the polypeptide as shown in SEQ ID NO: 73, 75, 77, 79, 81, 83, 85 and/or 87.
[0373] In the case of the G-protein coupled receptor, functional equivalents derived from one of the polypeptides as shown in SEQ ID NO: 130, 134, 138, 142, 146, 150, 154, 158, 162, 166, 170 and/or 174 or comprising the consensus sequence as shown in SEQ ID NO: 177, 178 and/or 179 respectively or one or more motifs selected from the group consisting of SEQ ID NO: 180, 181, 182, 183, 184, 185, 186, 187, 188, 189 and/or 190, and/or 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207 and/or 208, and/or 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225 and/or 226 respectively according to the invention by substitution, insertion or deletion have at least 30%, 35%, 40%, 45% or 50%, preferably at least 55%, 60%, 65% or 70% by preference at least 80%, especially preferably at least 85% or 90%, 91%, 92%, 93% or 94%, very especially preferably at least 95%, 97%, 98% or 99% homology with one of the polypeptides as shown in SEQ ID NO: 130, 134, 138, 142, 146, 150, 154, 158, 162, 166, 170 and/or 174 or with one of the polypeptides comprising a consensus sequence as shown in SEQ ID NO: 177, 178 and/or 179 respectively or one or more motifs selected from the group consisting of SEQ ID NO: 180, 181, 182, 183, 184, 185, 186, 187, 188, 189 and/or 190, and/or 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207 and/or 208, and/or 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225 and/or 226 respectively and are distinguished by essentially the same properties as the polypeptide as shown in SEQ ID NO: 130, 134, 138, 142, 146, 150, 154, 158, 162, 166, 170 and/or 174.
[0374] In the case of the G-protein coupled receptor, functional equivalents derived from the nucleic acid sequence as shown in SEQ ID NO: 129, 133, 137, 141, 145, 149, 153, 157, 161, 165, 169 and/or 173 according to the invention by substitution, insertion or deletion have at least 30%, 35%, 40%, 45% or 50%, preferably at least 55%, 60%, 65% or 70% by preference at least 80%, especially preferably at least 85% or 90%, 91%, 92%, 93% or 94%, very especially preferably at least 95%, 97%, 98% or 99% homology with one of the nucleic acids as shown in SEQ ID NO: 129, 133, 137, 141, 145, 149, 153, 157, 161, 165, 169 and/or 173 according to the invention and encode polypeptides having essentially the same properties as the polypeptide as shown in SEQ ID NO: 130, 134, 138, 142, 146, 150, 154, 158, 162, 166, 170 and/or 174.
[0375] In the case of the SK-channel, functional equivalents derived from one of the polypeptides as shown in SEQ ID NO: 228, 230, 232 or comprising the consensus sequence as shown in SEQ ID NO: 239 or one or more motifs selected from the group consisting of SEQ ID NO: 240, 241, 242, 243, 244, 245, 246, 247, 248, 249, 250, 251, 252 and 253 according to the invention by substitution, insertion or deletion have at least 30%, 35%, 40%, 45% or 50%, preferably at least 55%, 60%, 65% or 70% by preference at least 80%, especially preferably at least 85% or 90%, 91%, 92%, 93% or 94%, very especially preferably at least 95%, 97%, 98% or 99% homology with one of the polypeptides as shown in SEQ ID NO: 228, 230, 232 or with one of the polypeptides comprising a consensus sequence as shown in SEQ ID NO: 239 or one or more motifs selected from the group consisting of SEQ ID NO: 240, 241, 242, 243, 244, 245, 246, 247, 248, 249, 250, 251, 252 and 253 and are distinguished by essentially the same properties as the polypeptide as shown in SEQ ID NO: 228, 230, 232.
[0376] In the case of the SK-channel, functional equivalents derived from the nucleic acid sequence as shown in SEQ ID NO: 227, 229, 231 according to the invention by substitution, insertion or deletion have at least 30%, 35%, 40%, 45% or 50%, preferably at least 55%, 60%, 65% or 70% by preference at least 80%, especially preferably at least 85% or 90%, 91%, 92%, 93% or 94%, very especially preferably at least 95%, 97%, 98% or 99% homology with one of the nucleic acids as shown in SEQ ID NO: 227, 229, 231 according to the invention and encode polypeptides having essentially the same properties as the polypeptide as shown in SEQ ID NO: 228, 230, 232.
[0377] In one embodiment "homology" or "identity" between two nucleic acid sequences or polypeptide sequences is defined by the identity of the nucleic acid sequence/polypeptide sequence over in each case the entire sequence length, which is calculated by alignment with the aid of the program algorithm GAP (Wisconsin Package Version 10.0, University of Wisconsin, Genetics Computer Group (GCG), Madison, USA), setting the following parameters:
[0378] Gap Weight: 8 Length Weight: 2
[0379] Average Match: 2,912 Average Mismatch:--2,003
[0380] In the following text, the term identity is also used synonymously instead of the term "homologous" or "homology".
[0381] "Mutations" comprise substitutions, additions, deletions, inversions or insertions of one or more nucleotide residues, which may also bring about changes in the corresponding amino acid sequence of the target protein by substitution, insertion or deletion of one or more amino acids.
[0382] In one embodiment the present invention is directed to an isolated nucleic acid molecule selected from the group consisting of:
[0383] a) a nucleic acid molecule encoding the polypeptide shown in SEQ ID NO: 2, 6, 10, 14, 18, 22, 26 and/or 30;
[0384] b) a nucleic acid molecule shown in SEQ ID NO: 1, 5, 9, 13, 17, 21, 25 and/or 29;
[0385] c) a nucleic acid molecule, which, as a result of the degeneracy of the genetic code, can be derived from a polypeptide sequence according to SEQ ID NO: 2, 6, 10, 14, 18, 22, 26 and/or 30;
[0386] d) a nucleic acid molecule having at least 50% identity with the nucleic acid molecule sequence of a polynucleotide comprising the nucleic acid molecule shown in SEQ ID NO: 1, 5, 9, 13, 17, 21, 25 and/or 29;
[0387] e) a nucleic acid molecule encoding a polypeptide having at least 50% identity with the amino acid sequence of the polypeptide encoded by the nucleic acid molecule of (a) to (c) and having the activity of a voltage-gated potassium channel Sha1 (Shaker cognate 1 or Shaker-like) and/or its accessory protein KChIP (potassium channel-interacting protein) respectively;
[0388] f) nucleic acid molecule which hybridizes with a nucleic acid molecule of (a) to (c) under stringent hybridization conditions;
[0389] g) a nucleic acid molecule encoding a polypeptide which can be isolated with the aid of monoclonal or polyclonal antibodies made against a polypeptide encoded by one of the nucleic acid molecules of (a) to (e) and having the activity of a voltage-gated potassium channel Sha1 (Shaker cognate 1 or Shaker-like) and/or its accessory protein KChIP (potassium channel-interacting protein) respectively;
[0390] h) a nucleic acid molecule encoding a polypeptide comprising the consensus sequence as shown in SEQ ID NO: 33 and/or 34 respectively or one or more motifs selected from the group consisting of SEQ ID NO: 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54 and/or 55, and/or 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70 and/or 71 respectively;
[0391] i) nucleic acid molecule which comprises a polynucleotide, which is obtained by amplifying a cDNA library or a genomic library using the primers in SEQ ID NO: 7, 8; 9, 10; 11, 12; respectively
[0392] and
[0393] j) a nucleic acid molecule which is obtainable by screening a suitable nucleic acid library under stringent hybridization conditions with a probe comprising a complementary sequence of a nucleic acid molecule of (a) or (b) or with a fragment thereof, having at least 15 nt, preferably 20 nt, 30 nt, 50 nt, 100 nt, 200 nt or 500 nt of a nucleic acid molecule complementary to a nucleic acid molecule sequence characterized in (a) to (e) and encoding a polypeptide and having the activity of a voltage-gated potassium channel Sha1 (Shaker cognate 1 or Shaker-like) and/or its accessory protein KChIP (potassium channel-interacting protein) respectively.
[0394] In the case of the shaker channel and/or a Hyperkinetic beta subunit, in one embodiment the present invention is directed to an isolated nucleic acid molecule selected from the group consisting of:
[0395] a) a nucleic acid molecule encoding a polypeptide comprising the polypeptide shown in SEQ ID NO: 73, 75, 77, 79, 81, 83, 85 and/or 87;
[0396] b) a nucleic acid molecule comprising the nucleic acid molecule shown in SEQ ID NO: 72, 74, 76, 78, 80, 82, 84 and/or 86;
[0397] c) a nucleic acid molecule, which, as a result of the degeneracy of the genetic code, can be derived from a polypeptide comprising a polypeptide sequence according to SEQ ID NO: 73, 75, 77, 79, 81, 83, 85 and/or 87;
[0398] d) a nucleic acid molecule having at least 50% identity with the nucleic acid molecule sequence of a polynucleotide comprising the nucleic acid molecule shown in SEQ ID NO: 72, 74, 76, 78, 80, 82, 84 and/or 86;
[0399] e) a nucleic acid molecule encoding a polypeptide having at least 50% identity with the amino acid sequence of the polypeptide encoded by the nucleic acid molecule of (a) to (c) and having the activity of a Shaker channel and/or a Hyperkinetic beta subunit, preferably H-kv beta subunit A or C subtype respectively;
[0400] f) nucleic acid molecule which hybridizes with a nucleic acid molecule of (a) to (c) under stringent hybridization conditions;
[0401] g) a nucleic acid molecule encoding a polypeptide which can be isolated with the aid of monoclonal or polyclonal antibodies made against a polypeptide encoded by one of the nucleic acid molecules of (a) to (e) and having the activity of a Shaker channel and/or a Hyperkinetic beta subunit, preferably H-kv beta subunit A or C subtype respectively;
[0402] h) a nucleic acid molecule encoding a polypeptide comprising the consensus sequence as shown in SEQ ID NO: 102 and/or 103 respectively or one or more motifs selected from the group consisting of SEQ ID NO: 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124 and/or 125 and/or 126, 127 and/or 128 respectively;
[0403] i) nucleic acid molecule which comprises a polynucleotide, which is obtained by amplifying a cDNA library or a genomic library using the primers in SEQ ID NO: 88, 89; 90, 91; 92, 93; 94, 95; 96, 97; 98, 99 and/or 100, 101 respectively and
[0404] j) a nucleic acid molecule which is obtainable by screening a suitable nucleic acid library under stringent hybridization conditions with a probe comprising a complementary sequence of a nucleic acid molecule of (a) or (b) or with a fragment thereof, having at least 15 nt, preferably 20 nt, 30 nt, 50 nt, 100 nt, 200 nt or 500 nt of a nucleic acid molecule complementary to a nucleic acid molecule sequence characterized in (a) to (e) and encoding a polypeptide and having the activity of a Shaker channel and/or a Hyperkinetic beta subunit, preferably H-kv beta subunit A or C subtype respectively.
[0405] In the case of the G-protein coupled receptor, in one embodiment the present invention is directed to an isolated nucleic acid molecule selected from the group consisting of:
[0406] a) a nucleic acid molecule encoding the polypeptide shown in SEQ ID NO: 130, 134, 138, 142, 146, 150, 154, 158, 162, 166, 170 and/or 174;
[0407] b) a nucleic acid molecule shown in SEQ ID NO: 129, 133, 137, 141, 145, 149, 153, 157, 161, 165, 169 and/or 173;
[0408] c) a nucleic acid molecule, which, as a result of the degeneracy of the genetic code, can be derived from a polypeptide comprising a polypeptide sequence according to SEQ ID NO: 130, 134, 138, 142, 146, 150, 154, 158, 162, 166, 170 and/or 174;
[0409] d) a nucleic acid molecule having at least 50% identity with the nucleic acid molecule sequence of a polynucleotide comprising the nucleic acid molecule shown in SEQ ID NO: 129, 133, 137, 141, 145, 149, 153, 157, 161, 165, 169 and/or 173;
[0410] e) a nucleic acid molecule encoding a polypeptide having at least 50% identity with the amino acid sequence of the polypeptide encoded by the nucleic acid molecule of (a) to (c) and having the activity of a octopamine receptor selected from the group consisting of oa2, preferably from Drosophila melanogaster, Oamb, Oct-beta-2R and Oct-beta-3R;
[0411] f) nucleic acid molecule which hybridizes with a nucleic acid molecule of (a) to (c) under stringent hybridization conditions;
[0412] g) a nucleic acid molecule encoding a polypeptide which can be isolated with the aid of monoclonal or polyclonal antibodies made against a polypeptide encoded by one of the nucleic acid molecules of (a) to (e) and having the activity of a octopamine receptor selected from the group consisting of oa2, preferably from Drosophila melanogaster, Oamb, Oct-beta-2R and Oct-beta-3R;
[0413] h) a nucleic acid molecule encoding a polypeptide comprising the consensus sequence as shown in SEQ ID NO: 177, 178 and/or 179 respectively or one or more motifs selected from the group consisting of SEQ ID NO: 180, 181, 182, 183, 184, 185, 186, 187, 188, 189 and/or 190, and/or 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207 and/or 208, and/or 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225 and/or 226 respectively;
[0414] i) nucleic acid molecule which comprises a polynucleotide, which is obtained by amplifying a cDNA library or a genomic library using the primers in SEQ ID NO: 131, 132; 135, 136; 139, 140; 143, 144; 147, 148; 151, 152; 155, 156, 159, 160; 163, 164; 167, 168; 171, 172 and/or 175, 176
[0415] and
[0416] j) a nucleic acid molecule which is obtainable by screening a suitable nucleic acid library under stringent hybridization conditions with a probe comprising a complementary sequence of a nucleic acid molecule of (a) or (b) or with a fragment thereof, having at least 15 nt, preferably 20 nt, 30 nt, 50 nt, 100 nt, 200 nt or 500 nt of a nucleic acid molecule complementary to a nucleic acid molecule sequence characterized in (a) to (e) and encoding a polypeptide and having the activity of a octopamine receptor selected from the group consisting of oa2, preferably from Drosophila melanogaster, Oamb, Oct-beta-2R and Oct-beta-3R.
[0417] In the case of the SK-channel, in one embodiment the present invention is directed to an isolated nucleic acid molecule selected from the group consisting of:
[0418] a) a nucleic acid molecule encoding the polypeptide shown in SEQ ID NO: 230, 232;
[0419] b) a nucleic acid molecule shown in SEQ ID NO: 229, 231;
[0420] c) a nucleic acid molecule, which, as a result of the degeneracy of the genetic code, can be derived from a polypeptide sequence according to SEQ ID NO: 230, 232;
[0421] d) a nucleic acid molecule having at least 50% identity with the nucleic acid molecule sequence of a polynucleotide comprising the nucleic acid molecule shown in SEQ ID NO: 229, 231;
[0422] e) a nucleic acid molecule encoding a polypeptide having at least 50% identity with the amino acid sequence of the polypeptide encoded by the nucleic acid molecule of (a) to (c) and having the activity of a small-conductance Ca2+-activated potassium channel;
[0423] f) nucleic acid molecule which hybridizes with a nucleic acid molecule of (a) to (c) under stringent hybridization conditions;
[0424] g) a nucleic acid molecule encoding a polypeptide which can be isolated with the aid of monoclonal or polyclonal antibodies made against a polypeptide encoded by one of the nucleic acid molecules of (a) to (e) and having the activity of a small-conductance Ca2+-activated potassium channel;
[0425] h) a nucleic acid molecule encoding a polypeptide comprising the consensus sequence as shown in SEQ ID NO: 239 or one or more motifs selected from the group consisting of SEQ ID NO: 240, 241, 242, 243, 244, 245, 246, 247, 248, 249, 250, 251, 252 and 253;
[0426] i) nucleic acid molecule which comprises a polynucleotide, which is obtained by amplifying a cDNA library or a genomic library using the primers in SEQ ID NO: 233, 234, 235, 236; and 237, 238; respectively and
[0427] j) a nucleic acid molecule which is obtainable by screening a suitable nucleic acid library under stringent hybridization conditions with a probe comprising a complementary sequence of a nucleic acid molecule of (a) or (b) or with a fragment thereof, having at least 15 nt, preferably 20 nt, 30 nt, 50 nt, 100 nt, 200 nt or 500 nt of a nucleic acid molecule complementary to a nucleic acid molecule sequence characterized in (a) to (e) and encoding a polypeptide and having the activity of a small-conductance Ca2+-activated potassium channel.
[0428] In one embodiment the present invention is directed to nucleic acid construct comprising the isolated nucleic acid molecule of the invention.
[0429] In one embodiment the present invention is directed to a vector comprising the nucleic acid construct or the isolated nucleic acid molecule of the invention.
[0430] In one embodiment the present invention is directed to a transgenic host cell, comprising the vector, the nucleic acid construct or the isolated nucleic acid molecule of the invention by way of transfection/transformation.
[0431] An "isolated" polynucleotide or nucleic acid molecule is separated from other polynucleotides or nucleic acid molecules, which are present in the natural source of the nucleic acid molecule. An isolated nucleic acid molecule may be a chromosomal fragment of several kb, or preferably, a molecule only comprising the coding region of the gene. Accordingly, an isolated nucleic acid molecule may comprise chromosomal regions, which are adjacent 5' and 3' or further adjacent chromosomal regions, but preferably comprises no such sequences which naturally flank the nucleic acid molecule sequence in the genomic or chromosomal context in the organism from which the nucleic acid molecule originates (for example sequences which are adjacent to the regions encoding the 5'- and 3'-UTRs of the nucleic acid molecule). In various embodiments, the isolated nucleic acid molecule used in the process according to the invention may, for example comprise less than approximately 5 kb, 4 kb, 3 kb, 2 kb, 1 kb, 0.5 kb or 0.1 kb nucleotide sequences which naturally flank the nucleic acid molecule in the genomic DNA of the cell from which the nucleic acid molecule originates.
[0432] The nucleic acid molecules used in the process or a part thereof can be isolated using molecular-biological standard techniques and the sequence information provided herein. Also, for example a homologous sequence or homologous, conserved sequence regions at the DNA or amino acid level can be identified with the aid of comparison algorithms. The former can be used as hybridization probes under standard hybridization techniques (for example those described in Sambrook et al., Molecular Cloning: A Laboratory Manual. 2nd Ed., Cold Spring Harbor Laboratory, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y., 1989) for isolating further nucleic acid sequences useful in this process.
[0433] A nucleic acid molecule encompassing a complete sequence of a molecule which activity is to be reduced in the process of the present invention or a part thereof may additionally be isolated by polymerase chain reaction, oligonucleotide primers based on this sequence or on parts thereof being used. For example, a nucleic acid molecule comprising the complete sequence or part thereof can be isolated by polymerase chain reaction using oligonucleotide primers which have been generated on the basis of this every sequence. For example, mRNA can be isolated from cells, for example by means of the guanidinium thiocyanate extraction method of Chirgwin et al. (1979) Biochemistry 18:5294-5299, and cDNA can be generated by means of reverse transcriptase (for example Moloney MLV reverse transcriptase, available from Gibco/BRL, Bethesda, Md., or AMV reverse transcriptase, obtainable from Seikagaku America, Inc., St. Petersburg, Fla.).
[0434] Synthetic oligonucleotide primers for the amplification by means of polymerase chain reaction can be generated on the basis of a sequence shown herein. Such primers can be used to amplify nucleic acids sequences for example from cDNA libraries or from genomic libraries and identify nucleic acid molecules, which are useful in the inventive process.
[0435] Moreover, it is possible to identify conserved regions from various organisms by carrying out protein sequence alignments with the polypeptide encoded by the nucleic acid molecule to be reduced according to the process of the invention, in particular with the sequences encoded by the nucleic acid molecule shown in SEQ ID NO: 1, 5, 9, 13, 17, 21, 25 and/or 29, in the case of the shaker channel and/or a Hyperkinetic beta subunit SEQ ID NO; 72, 74, 76, 78, 80, 82, 84 and/or 86, in the case of the G-protein coupled receptor SEQ ID NO: 129, 133, 137, 141, 145, 149, 153, 157, 161, 165, 169 and/or 173, and in the case of the SK-channel SEQ ID NO: 227, 229, 231, from which conserved regions, and in turn, degenerate primers can be derived.
[0436] Conserved regions are those, which show a very little variation in the amino acid in one particular position of several homologs from different origin. The consenus sequence and polypeptide motifs shown herein are derived from said aligments. Moreover, it is possible to identify conserved regions from various organisms by carrying out protein sequence alignments with the polypeptide encoded by the nucleic acid molecule to be reduced according to the process of the invention, in particular with the sequences encoded by the polypeptide molecule shown in SEQ ID NO: 2, 6, 10, 14, 18, 22, 26 and/or 30, in the case of the shaker channel and/or a Hyperkinetic beta subunit SEQ ID NO: 73, 75, 77, 79, 81, 83, 85 and/or 87, in the case of the G-protein coupled receptor SEQ ID NO: 130, 134, 138, 142, 146, 150, 154, 158, 162, 166, 170 and/or 174, and in the case of the SK-channel SEQ ID NO: 228, 230, 232 from which conserved regions, and in turn, degenerate primers can be derived.
[0437] Conserved regions are those, which show a very little variation in the amino acid in one particular position of several homologs from different origin. The consenus sequences and polypeptide motifs shown herein are derived from said aligments. In one advantageous embodiment, in the method of the present invention the activity of a polypeptide is decreased comprising or consisting of a consensus sequence as shown in SEQ ID NO: 33 and/or 34, in the case of the shaker channel and/or a Hyperkinetic beta subunit SEQ ID NO: 102 and/or 103, in the case of the G-protein coupled receptor SEQ ID NO: 177, 178 and/or 179, and in the case of the SK-channel SEQ ID NO: 239 respectively or one or more motifs selected from the group consisting of SEQ ID NO: 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54 and/or 55, and/or 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70 and/or 71, in the case of the shaker channel and/or a Hyperkinetic beta subunit SEQ ID NO: 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124 and/or 125 and/or 126, 127 and/or 128, in the case of the G-protein coupled receptor SEQ ID NO: 180, 181, 182, 183, 184, 185, 186, 187, 188, 189 and/or 190, and/or 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207 and/or 208, and/or 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225 and/or 226, and in the case of the SK-channel SEQ ID NO: 240, 241, 242, 243, 244, 245, 246, 247, 248, 249, 250, 251, 252 and 253 respectively and in one another embodiment, the present invention relates to a polypeptide comprising or consisting of the consensus sequence as shown in SEQ ID NO: 33 and/or 34, in the case of the shaker channel and/or a Hyperkinetic beta subunit SEQ ID NO: 102 and/or 103, in the case of the G-protein coupled receptor SEQ ID NO: 177, 178 and/or 179, and in the case of the SK-channel SEQ ID NO: 239 respectively or one or more motifs selected from the group consisting of SEQ ID NO: 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54 and/or 55, and/or 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70 and/or 71, in the case of the shaker channel and/or a Hyperkinetic beta subunit SEQ ID NO: 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124 and/or 125 and/or 126, 127 and/or 128, in the case of the G-protein coupled receptor SEQ ID NO: 180, 181, 182, 183, 184, 185, 186, 187, 188, 189 and/or 190, and/or 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207 and/or 208, and/or 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225 and/or 226, and in the case of the SK-channel SEQ ID NO: 240, 241, 242, 243, 244, 245, 246, 247, 248, 249, 250, 251, 252 and 253 respectively whereby 20 or less, preferably 15 or 10, preferably 9, 8, 7, or 6, more preferred 5 or 4, even more preferred 3, even more preferred 2, even more preferred 1, most preferred 0 of the amino acids positions indicated can be replaced by any amino acid. In one embodiment not more than 15%, preferably 10%, even more preferred 5%, 4%, 3%, or 2%, most preferred 1% or 0% of the amino acid position indicated by a letter are/is replaced another amino acid. In one embodiment 20 or less, preferably 15 or 10, preferably 9, 8, 7, or 6, more preferred 5 or 4, even more preferred 3, even more preferred 2, even more preferred 1, most preferred 0 amino acids are inserted into a consensus sequence or protein motif.
[0438] The consensus sequence was derived from a multiple alignment of the sequences as shown in SEQ ID NO 2, 6, 10, 14, 18, 22, 26 and/or 30, in the case of the shaker channel and/or a Hyperkinetic beta subunit SEQ ID NO 73, 75, 77, 79, 81, 83, 85 and/or 87, in the case of the G-protein coupled receptor SEQ ID NO 130, 134, 138, 142, 146, 150, 154, 158, 162, 166, 170 and/or 174, and in the case of the SK-channel SEQ ID NO 228, 230, 232. The letters represent the one letter amino acid code and indicate that the amino acids are conserved in all aligned proteins. The letter X stands for amino acids, which are not conserved in all sequences.
[0439] Conserved domains were identified from all sequences and are described using a subset of the standard Prosite notation, e.g the pattern Y-x(21,23)-[FW] means that a conserved tyrosine is separated by minimum 21 and maximum 23 amino acid residues from either a phenylalanine or tryptophane.
[0440] Conserved patterns were identified with the software tool MEME version 3.5.1 or manually. MEME was developed by Timothy L. Bailey and Charles Elkan, Dept. of Computer Science and Engeneering, University of California, San Diego, USA and is described by Timothy L. Bailey and Charles Elkan [Fitting a mixture model by expectation maximization to discover motifs in biopolymers, Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, Calif., 1994]. The source code for the stand-alone program is public available from the San Diego Supercomputer center (http://meme.sdsc.edu).
[0441] For identifying common motifs in all sequences with the software tool MEME, the following settings were used: -maxsize 500000, -nmotifs 15, -evt 0.001, -maxw 60, -distance 1e-3, -minsites number of sequences used for the analysis. Input sequences for MEME were nonaligned sequences in Fasta format. Other parameters were used in the default settings in this software version.
[0442] Prosite patterns for conserved domains were generated with the software tool Pratt version 2.1 or manually. Pratt was developed by Inge Jonassen, Dept. of Informatics, University of Bergen, Norway and is described by Jonassen et al. [I. Jonassen, J. F. Collins and D. G. Higgins, Finding flexible patterns in unaligned protein sequences, Protein Science 4 (1995), pp. 1587-1595; I. Jonassen, Efficient discovery of conserved patterns using a pattern graph, Submitted to CABIOS Febr. 1997]. The source code (ANSI C) for the stand-alone program is public available, e.g. at establisched Bioinformatic centers like EBI (European Bioinformatics Institute).
[0443] For generating patterns with the software tool Pratt, following settings were used: PL (max Pattern Length): 100, PN (max Nr of Pattern Symbols): 100, PX (max Nr of consecutive x's): 30, FN (max Nr of flexible spacers): 5, FL (max Flexibility): 30, FP (max Flex.Product): 10, ON (max number patterns): 50. Input sequences for Pratt were distinct regions of the protein sequences exhibiting high similarity as identified from software tool MEME. The minimum number of sequences, which have to match the generated patterns (CM, min Nr of Seqs to Match) was set to at least 80% of the provided sequences. Parameters not mentioned here were used in their default settings.
[0444] The Prosite patterns of the conserved domains can be used to search for protein sequences matching this pattern. Various establisched Bioinformatic centers provide public internet portals for using those patterns in database searches (e.g. PIR [Protein Information Resource, located at Georgetown University Medical Center] or ExPASy [Expert Protein Analysis System]). Alternatively, stand-alone software is available, like the program Fuzzpro, which is part of the EM-BOSS software package. For example, the program Fuzzpro not only allows to search for an exact pattern-protein match but also allows to set various ambiguities in the performed search.
[0445] The alignment was performed with the software ClustalW (version 1.83) and is described by Thompson et al. [Thompson, J. D., Higgins, D. G. and Gibson, T. J. (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Research, 22:4673-4680]. The source code for the stand-alone program is public available from the European Molecular Biology Laboratory; Heidelberg, Germany. The analysis was performed using the default parameters of ClustalW v1.83 (gap open penalty: 10.0; gap extension penalty: 0.2; protein matrix: Gonnet; pprotein/DNA endgap: -1; protein/DNA gapdist: 4).
[0446] Degenerate primers, designed as described above, can then be utilized by PCR for the amplification of fragments of novel coding regions coding for proteins having above-mentioned activity.
[0447] These fragments can then be utilized as hybridization probe for isolating the complete gene sequence. As an alternative, the missing 5' and 3' sequences can be isolated by means of RACE-PCR. A nucleic acid molecule according to the invention can be amplified using cDNA or, as an alternative, genomic DNA as template and suitable oligonucleotide primers, following standard PCR amplification techniques. The nucleic acid molecule amplified thus can be cloned into a suitable vector and characterized by means of DNA sequence analysis. Oligonucleotides, which correspond to one of the nucleic acid molecules used in the process, can be generated by standard synthesis methods, for example using an automatic DNA synthesizer.
[0448] Nucleic acid molecules which are advantageously for the process according to the invention can be isolated based on their homology to the nucleic acid molecules disclosed herein using the sequences or part thereof as hybridization probe and following standard hybridization techniques under stringent hybridization conditions.
[0449] In one embodiment the present invention is directed to a polypeptide encoded by a nucleic acid molecule selected from the group consisting of:
[0450] a) a nucleic acid molecule encoding the polypeptide shown in SEQ ID NO: 2, 6, 10, 14, 18, 22, 26 and/or 30;
[0451] b) a nucleic acid molecule shown in SEQ ID NO: 1, 5, 9, 13, 17, 21, 25 and/or 29;
[0452] c) a nucleic acid molecule, which, as a result of the degeneracy of the genetic code, can be derived from a polypeptide sequence according to SEQ ID NO: 2, 6, 10, 14, 18, 22, 26 and/or 30;
[0453] d) a nucleic acid molecule having at least 50% identity with the nucleic acid molecule sequence of a polynucleotide comprising the nucleic acid molecule shown in SEQ ID NO: 1, 5, 9, 13, 17, 21, 25 and/or 29;
[0454] e) a nucleic acid molecule encoding a polypeptide having at least 50% identity with the amino acid sequence of the polypeptide encoded by the nucleic acid molecule of (a) to (c) and having the activity of a voltage-gated potassium channel Sha1 (Shaker cognate 1 or Shaker-like) and/or its accessory protein KChIP (potassium channel-interacting protein) respectively;
[0455] f) nucleic acid molecule which hybridizes with a nucleic acid molecule of (a) to (c) under stringent hybridization conditions;
[0456] g) a nucleic acid molecule encoding a polypeptide which can be isolated with the aid of monoclonal or polyclonal antibodies made against a polypeptide encoded by one of the nucleic acid molecules of (a) to (e) and having the activity of a voltage-gated potassium channel Sha1 (Shaker cognate 1 or Shaker-like) and/or its accessory protein KChIP (potassium channel-interacting protein) respectively;
[0457] h) a nucleic acid molecule encoding a polypeptide comprising the consensus sequence as shown in SEQ ID NO: 33 and/or 34 respectively or one or more motifs selected from the group consisting of SEQ ID NO: 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54 and/or 55, and/or 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70 and/or 71 respectively;
[0458] i) nucleic acid molecule which comprises a polynucleotide, which is obtained by amplifying a cDNA library or a genomic library using the primers in SEQ ID NO: 7, 8; 9, 10; 11, 12; respectively
[0459] and
[0460] j) a nucleic acid molecule which is obtainable by screening a suitable nucleic acid library under stringent hybridization conditions with a probe comprising a complementary sequence of a nucleic acid molecule of (a) or (b) or with a fragment thereof, having at least 15 nt, preferably 20 nt, 30 nt, 50 nt, 100 nt, 200 nt or 500 nt of a nucleic acid molecule complementary to a nucleic acid molecule sequence characterized in (a) to (e) and encoding a polypeptide and having the activity of a voltage-gated potassium channel Sha1 (Shaker cognate 1 or Shaker-like) and/or its accessory protein KChIP (potassium channel-interacting protein) respectively.
[0461] In the case of the shaker channel and/or a Hyperkinetic beta subunit, in one embodiment the present invention is directed to a polypeptide encoded by a nucleic acid molecule selected from the group consisting of:
[0462] a) a nucleic acid molecule encoding the polypeptide shown in SEQ ID NO: 73, 75, 77, 79, 81, 83, 85 and/or 87;
[0463] b) a nucleic acid molecule shown in SEQ ID NO: 72, 74, 76, 78, 80, 82, 84 and/or 86;
[0464] c) a nucleic acid molecule, which, as a result of the degeneracy of the genetic code, can be derived from a polypeptide sequence according to SEQ ID NO: 73, 75, 77, 79, 81, 83, 85 and/or 87;
[0465] d) a nucleic acid molecule having at least 50% identity with the nucleic acid molecule sequence of a polynucleotide comprising the nucleic acid molecule shown in SEQ ID NO: 72, 74, 76, 78, 80, 82, 84 and/or 86;
[0466] e) a nucleic acid molecule encoding a polypeptide having at least 50% identity with the amino acid sequence of the polypeptide encoded by the nucleic acid molecule of (a) to (c) and having the activity of a Shaker channel and/or a Hyperkinetic beta subunit, preferably H-kv beta subunit A or C subtype respectively;
[0467] f) nucleic acid molecule which hybridizes with a nucleic acid molecule of (a) to (c) under stringent hybridization conditions;
[0468] g) a nucleic acid molecule encoding a polypeptide which can be isolated with the aid of monoclonal or polyclonal antibodies made against a polypeptide encoded by one of the nucleic acid molecules of (a) to (e) and having the activity of a Shaker channel and/or a Hyperkinetic beta subunit, preferably H-kv beta subunit A or C subtype respectively;
[0469] h) a nucleic acid molecule encoding a polypeptide comprising the consensus sequence as shown in SEQ ID NO: 102 and/or 103 respectively or one or more motifs selected from the group consisting of SEQ ID NO: 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124 and/or 125 and/or 126, 127 and/or 128 respectively;
[0470] i) nucleic acid molecule which comprises a polynucleotide, which is obtained by amplifying a cDNA library or a genomic library using the primers in SEQ ID NO: 88, 89; 90, 91; 92, 93; 94, 95; 96, 97; 98, 99 and/or 100, 101 respectively
[0471] and
[0472] j) a nucleic acid molecule which is obtainable by screening a suitable nucleic acid library under stringent hybridization conditions with a probe comprising a complementary sequence of a nucleic acid molecule of (a) or (b) or with a fragment thereof, having at least 15 nt, preferably 20 nt, 30 nt, 50 nt, 100 nt, 200 nt or 500 nt of a nucleic acid molecule complementary to a nucleic acid molecule sequence characterized in (a) to (e) and encoding a polypeptide and having the activity of a Shaker channel and/or a Hyperkinetic beta subunit, preferably H-kv beta subunit A or C subtype respectively.
[0473] In the case of the G-protein coupled receptor, in one embodiment the present invention is directed to a polypeptide encoded by a nucleic acid molecule selected from the group consisting of:
[0474] a) a nucleic acid molecule encoding the polypeptide shown in SEQ ID NO: 130, 134, 138, 142, 146, 150, 154, 158, 162, 166, 170 and/or 174;
[0475] a nucleic acid molecule shown in SEQ ID NO: 129, 133, 137, 141, 145, 149, 153, 157, 161, 165, 169 and/or 173
[0476] a nucleic acid molecule, which, as a result of the degeneracy of the genetic code, can be derived from a polypeptide sequence according to SEQ ID NO: 130, 134, 138, 142, 146, 150, 154, 158, 162, 166, 170 and/or 174;
[0477] d) a nucleic acid molecule having at least 50% identity with the nucleic acid molecule sequence of a polynucleotide comprising the nucleic acid molecule shown in SEQ ID NO: 129, 133, 137, 141, 145, 149, 153, 157, 161, 165, 169 and/or 173;
[0478] e) a nucleic acid molecule encoding a polypeptide having at least 50% identity with the amino acid sequence of the polypeptide encoded by the nucleic acid molecule of (a) to (c) and having the activity of a octopamine receptor selected from the group consisting of oa2, preferably from Drosophila melanogaster, Oamb, Oct-beta-2R and Oct-beta-3R;
[0479] f) nucleic acid molecule which hybridizes with a nucleic acid molecule of (a) to (c) under stringent hybridization conditions;
[0480] g) a nucleic acid molecule encoding a polypeptide which can be isolated with the aid of monoclonal or polyclonal antibodies made against a polypeptide encoded by one of the nucleic acid molecules of (a) to (e) and having the activity of a octopamine receptor selected from the group consisting of oa2, preferably from Drosophila melanogaster, Oamb, Oct-beta-2R and Oct-beta-3R;
[0481] h) a nucleic acid molecule encoding a polypeptide comprising the consensus sequence as shown in SEQ ID NO: 177, 178 and/or 179 respectively or one or more motifs selected from the group consisting of SEQ ID NO: 180, 181, 182, 183, 184, 185, 186, 187, 188, 189 and/or 190, and/or 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207 and/or 208, and/or 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225 and/or 226 respectively;
[0482] i) nucleic acid molecule which comprises a polynucleotide, which is obtained by amplifying a cDNA library or a genomic library using the primers in SEQ ID NO: 131, 132; 135, 136; 139, 140; 143, 144; 147, 148; 151, 152; 155, 156, 159, 160; 163, 164; 167, 168; 171, 172 and/or 175, 176
[0483] and
[0484] j) a nucleic acid molecule which is obtainable by screening a suitable nucleic acid library under stringent hybridization conditions with a probe comprising a complementary sequence of a nucleic acid molecule of (a) or (b) or with a fragment thereof, having at least 15 nt, preferably 20 nt, 30 nt, 50 nt, 100 nt, 200 nt or 500 nt of a nucleic acid molecule complementary to a nucleic acid molecule sequence characterized in (a) to (e) and encoding a polypeptide and having the activity of a octopamine receptor selected from the group consisting of oa2, preferably from Drosophila melanogaster, Oamb, Oct-beta-2R and Oct-beta-3R.
[0485] In the case of the SK-channel, in one embodiment the present invention is directed to a polypeptide encoded by a nucleic acid molecule selected from the group consisting of:
[0486] a) a nucleic acid molecule encoding the polypeptide shown in SEQ ID NO: 23Q, 232;
[0487] b) a nucleic acid molecule shown in SEQ ID NO: 229, 231;
[0488] c) a nucleic acid molecule, which, as a result of the degeneracy of the genetic code, can be derived from a polypeptide sequence according to SEQ ID NO: 230, 232;
[0489] d) a nucleic acid molecule having at least 50% identity with the nucleic acid molecule sequence of a polynucleotide comprising the nucleic acid molecule shown in SEQ ID NO: 229, 231;
[0490] e) a nucleic acid molecule encoding a polypeptide having at least 50% identity with the amino acid sequence of the polypeptide encoded by the nucleic acid molecule of (a) to (c) and having the activity of a small-conductance Ca2+-activated potassium channel;
[0491] f) nucleic acid molecule which hybridizes with a nucleic acid molecule of (a) to (c) under stringent hybridization conditions;
[0492] g) a nucleic acid molecule encoding a polypeptide which can be isolated with the aid of monoclonal or polyclonal antibodies made against a polypeptide encoded by one of the nucleic acid molecules of (a) to (e) and having the activity of a small-conductance Ca2+-activated potassium channel;
[0493] h) a nucleic acid molecule encoding a polypeptide comprising the consensus sequence as shown in SEQ ID NO: 239 or one or more motifs selected from the group consisting of SEQ ID NO: 240, 241, 242, 243, 244, 245, 246, 247, 248, 249, 250, 251, 252 and 253;
[0494] i) nucleic acid molecule which comprises a polynucleotide, which is obtained by amplifying a cDNA library or a genomic library using the primers in SEQ ID NO: 233, 234, 235, 236; and 237, 238; respectively
[0495] and
[0496] j) a nucleic acid molecule which is obtainable by screening a suitable nucleic acid library under stringent hybridization conditions with a probe comprising a complementary sequence of a nucleic acid molecule of (a) or (b) or with a fragment thereof, having at least 15 nt, preferably 20 nt, 30 nt, 50 nt, 100 nt, 200 nt or 500 nt of a nucleic acid molecule complementary to a nucleic acid molecule sequence characterized in (a) to (e) and encoding a polypeptide and having the activity of a small-conductance Ca2+-activated potassium channel.
[0497] In one embodiment the present invention is directed to a membrane comprising the polypeptide of the invention, whereby the membrane has not shown endogenous activity of the polypeptide of the invention.
[0498] In one embodiment the present invention is directed to a host cell comprising the polypeptide of the invention, whereby the membrane of the host has not shown endogenous activity of the polypeptide of the invention.
[0499] The wording "the membrane has not shown originally the activity of the polypeptide of the invention" means, that a polypeptide of the invention is not part of the natural occuring membrane, but it was assembled into the membrane according to a method of the invention.
[0500] In one embodiment the method of the present invention comprise the expression of a gene coding for a polypeptide with the activity of
[0501] i) an insect voltage-gated potassium channel Sha1 (Shaker cognate 1 or Shaker-like) and/or its accessory protein KChIP (potassium channel-interacting protein) respectively in the membrane of a host cell, or
[0502] ii) an insect Shaker channel and/or a Hyperkinetic beta subunit, preferably H-kv beta subunit A or C subtype respectively in the membrane of a host cell, or
[0503] iii) an insect octopamine receptor selected from the group consisting of oa2, preferably from Drosophila melanogaster, Oamb, Oct-beta-2R and Oct-beta-3R in the membrane of a host cell, or
[0504] iv) an insect small-conductance Ca2+-activated potassium channel in the membrane of a host cell.
[0505] In one embodiment the host cell is a mammalian cell.
[0506] In one embodiment the host cell is a cell that in its native state has low or uninteresting electric activity. In contrast, a host cell expressing the polypeptide of the invention shows conductivity selected from the group of intervals 2-20 pS, 3-20 pS, 4-15 pS, 5-12 pS and 5-10 pS.
[0507] In one embodiment the host cell is selected from the group consisting of CHO-cells, HEK293, COS, HeLa, NIH3T3, BAK21, Jurkat, CV-1, HepC-2-, Xenopus oocyte; Sf9, S2, Sf21, Hi5, Pc12, U2OS.
[0508] For the production of the host cell of the invention comprising the polypeptide of the invention with the activity of
[0509] i) a ion channel and/or its accessory protein, a nucleotide sequence encoding the polypeptide, or
[0510] ii) a ion channel and/or a Hyperkinetic beta subunit, preferably H-kv beta subunit A or C subtype, a nucleotide sequence encoding the polypeptide, or
[0511] iii) an octopamine receptor and preferably additionally a marker protein, e.g. GFP, and/or additionally a "promiscuous" G-protein at least one nucleotide sequence encoding the polypeptides, or
[0512] iv) a ion channel a nucleotide sequence encoding the polypeptide is introduced into the host cell where it is recombinantly produced.
[0513] is introduced into the host cell where it is recombinantly produced.
[0514] In one embodiment the host cell is a microorganism in which the nucleotide sequence encoding the polypeptide with the activity of
[0515] i) a potassium ion channel of the invention and/or its accessory protein, or
[0516] ii) a potassium ion channel of the invention and/or a Hyperkinetic beta subunit, preferably H-kv beta subunit A or C subtype, or
[0517] iii) an octopamine receptor of the invention and preferably additionally a marker protein, e.g. GFP, and/or additionally a "promiscuous" G-protein, or
[0518] iv) a channel of the invention
[0519] is introduce in order to manifold said nucleotide sequence according to the general cloning techniques as are described, for example, in T. Maniatis, E. F. Fritsch and J. Sambrook, "Molecular Cloning: A Laboratory Manual", Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y. (1989).
[0520] The above mentioned nucleic acid molecules can be cloned into a nucleic acid constructs or vectors according to the invention in combination together with further genes, or else different genes are introduced by transforming several nucleic acid constructs or vectors (including plasmids) into a host cell.
[0521] Accordingly, the invention also relates to a nucleic acid construct, preferably to an expression construct, comprising the nucleic acid molecule or molecules used in the process of the present invention or a fragment thereof functionally linked to one or more regulatory elements or signals. Furthermore the invention also relates to a nucleic acid constructs for the production of homologous recombination events, comprising the nucleic acids molecule used in the process of the present invention or parts thereof.
[0522] The nucleic acid construct can also comprise further genes, which are to be introduced into the host cells.
[0523] As described herein, regulator sequences or factors can have a positive effect on preferably the expression of the constructs introduced, thus increasing it. Thus, an enhancement of the regulator elements may advantageously take place at the transcriptional level by using strong transcription signals such as promoters and/or enhancers. In addition, however, an enhancement of translation is also possible, for example by increasing RNA stability.
[0524] Thus, the nucleic acid construct of the invention can be used as expression cassette and thus can be used directly for introduction into the host cell, or else they may be introduced into a vector. Accordingly in one embodiment the nucleic acid construct is an expression cassette comprising a microorganism promoter or a microorganism terminator or both. In another embodiment the expression cassette encompasses a eukaryotic promoter or a eukaryotic terminator or both.
[0525] If it is intended to transform the host cell with several constructs or vectors, the marker of a preceding transformation must be removed or a further marker employed in a following transformation. The markers can be removed from the host cell as described in the state of art via methods with which the skilled worker is familiar.
[0526] In one embodiment, the nucleic acid sequences used in the method according to the invention can be advantageously linked operably to one or more regulatory signals in order to increase gene expression.
[0527] These regulatory sequences are intended to enable the specific expression of nucleic acid molecules, e.g. the genes or gene fragments or of the gene products or the nucleic acid used in the process of the invention. Depending on the host organism for example eukaryotic cell or microorganism, this may mean, for example, that the gene or gene constructs is expressed and/or overexpressed after induction only, or that it is expressed and/or overexpressed constitutive. These regulatory sequences are, for example, sequences to which the inductors or repressors bind and which thus regulate the expression of the nucleic acid. Moreover, the gene construct can advantageously also comprise one or more of what are known as enhancer sequences in operable linkage with the promoter, and these enable an increased expression of the nucleic acid sequence. Also, it is possible to insert additional advantageous sequences at the 3' end of the DNA sequences, such as, for example, further regulatory elements or terminators.
[0528] The term "increased expression" or "overexpression" as used herein means any form of expression that is additional to the original wild-type expression level.
[0529] Methods for increasing expression of genes or gene products are well documented in the art and include, for example, overexpression driven by appropriate promoters, the use of transcription enhancers or translation enhancers. Isolated nucleic acids which serve as promoter or enhancer elements may be introduced in an appropriate position (typically upstream) of a nonheterologous form of a polynucleotide so as to upregulate expression of a nucleic acid encoding the polypeptide of interest.
[0530] In the case of the shaker channel and/or a Hyperkinetic beta subunit, in one embodiment of the invention a Kozak sequence is used.
[0531] The nucleic acid molecules, which encode proteins according to the invention and nucleic acid molecules, which encode other polypeptides may be present in one nucleic acid construct or vector or in several ones. In one embodiment, only one copy of the nucleic acid molecule for use in the process of the invention or its encoding genes is present in the nucleic acid construct or vector. Several vectors or nucleic acid construct or vector can be expressed together in the host organism. The nucleic acid molecule or the nucleic acid construct according to the invention can be inserted in a vector and be present in the cell in a free form. If a stable transformation is preferred, a vector is used, which is stably duplicated over several generations or which or a part of which is else be inserted into the genome. In the case of mammalian cells, integration into the nuclear genome may have taken place. For the insertion of more than one constructs in the host genome the constructs to be expressed might be present together in one vector, for example in above-described vectors bearing a plurality of constructs.
[0532] As a rule, regulatory sequences for the expression rate of a constructs are located upstream (5'), within, and/or downstream (3') relative to the sequence of the nucleic acid molecule to be regulated. They control in particular transcription and/or translation and/or the transcript stability. The expression level is dependent on the conjunction of further cellular regulatory systems, such as the protein biosynthesis and degradation systems of the cell.
[0533] Regulatory sequences include transcription and translation regulating sequences or signals, e.g. sequences located upstream (5'), which concern in particular the regulation of transcription or translation initiation, such as promoters or start codons, and sequences located downstream (3'), which concern in particular the regulation of transcription or translation termination and transcript stability, such as polyadenylation signals or stop codons.
[0534] Promoters, which are particularly advantageous, are constitutive, tissue or compartment specific and inducible promoters. In general, "promoter" is understood as meaning, in the present context, a regulatory sequence in a nucleic acid molecule, which mediates the expression of a coding sequence segment of a nucleic acid molecule. In principle, it is possible to use natural promoters together with their regulatory sequences. Some promoters for mammalian cells are for example CMV, SV40, TK, Beta-actin.
[0535] The nucleic acid construct is advantageously constructed in such a way that a promoter is followed by a suitable cleavage site for insertion of the nucleic acid to be expressed, advantageously in a polylinker, followed, if appropriate, by a terminator located behind the polylinker. If appropriate, this order is repeated several times so that several genes are combined in one construct and thus can be introduced into the transgenic plant in order to be expressed. The sequence is a for example repeated up to three times. For the expression, the nucleic acid sequences are inserted via the suitable cleavage site, for example in the polylinker behind the promoter. It is advantageous for each nucleic acid sequence to have its own promoter and, if appropriate, its own terminator, as mentioned above. However, it is also possible to insert several nucleic acid sequences behind a promoter and, if appropriate, before a terminator, in particular, if a polycistronic transcription is possible in the host or target cells. In this context, the insertion site, or the sequence of the nucleic acid molecules inserted, in the nucleic acid construct is not decisive, that is to say a nucleic acid molecule can be inserted in the first or last position in the cassette without this having a substantial effect on the expression. However, it is also possible to use only one promoter type in the construct.
[0536] One embodiment of the present invention also relates to a method for generating a vector, which comprises the insertion, into a vector, of the nucleic acid molecule characterized herein, the nucleic acid molecule according to the invention or the expression cassette according to the invention. The vector can, for example, be introduced into a cell, e.g. a microorganism or a mammalian cell, as described herein for the nucleic acid construct, or below under transformation or transfection or shown in the examples. A transient or stable transformation of the host or target cell is possible, however, a stable transformation is preferred.
[0537] The vector according to the invention is preferably a vector, which is suitable for expressing the polypeptide according to the invention in a cell, preferable a mammalian cell. The method can thus also encompass one or more steps for integrating regulatory signals into the vector, in particular signals, which mediate the expression in an organism such as a microorganism or mammalian cell.
[0538] Accordingly, the present invention also relates to a vector comprising the nucleic acid molecule characterized herein as part of a nucleic acid construct suitable for plant expression or the nucleic acid molecule according to the invention.
[0539] A advantageous vector used in the process of the invention, e.g. the vector of the invention, comprises a nucleic acid molecule which encodes a nucleic acid molecule which is used in the method of the invention, or a nucleic acid construct suitable for the expression in a cell comprising the nucleic acid molecules usable in the method of the invention as described above, either alone or in combination with further genes such as marker or selection genes.
[0540] Accordingly, the recombinant expression vectors which are advantageously used in the method of the invention comprise the nucleic acid molecules used in the method according to the invention or the nucleic acid construct according to the invention in a form which is suitable for expressing a nucleic acid molecule comprising a polynucleotide as shown in SEQ ID NO 2, 6, 10, 14, 18, 22, 26 and/or 30, in the case of the shaker channel and/or a Hyperkinetic beta subunit SEQ ID NO 73, 75, 77, 79, 81, 83, 85 and/or 87, in the case of the G-protein coupled receptor SEQ ID NO 130, 134, 138, 142, 146, 150, 154, 158, 162, 166, 170 and/or 174, and in the case of the SK-channel SEQ ID NO 228, 230, 232, or a homologue thereof and/or in the same time expressing, in a host cell, additional genes, which are accompanied by the nucleic acid molecules according to the invention or described herein. Accordingly, the recombinant expression vectors comprise one or more regulatory signals selected on the basis of the host cells to be used for the expression, in operable linkage with the nucleic acid sequence to be expressed.
[0541] In accordance with the invention, the term "vector" refers to a nucleic acid molecule, which is capable of transporting another nucleic acid to which it is linked. One type of vector is a "plasmid", which means a circular double-stranded DNA loop into which additional DNA segments can be ligated. A further type of vector is a viral vector, it being possible to ligate additional DNA segments into the viral genome. Certain vectors are capable of autonomous replication in a host cell into which they have been introduced (for example bacterial vectors with bacterial replication origin). Other preferred vectors are advantageously completely or partly integrated into the genome of a host cell when they are introduced into the host cell and thus replicate together with the host genome. Moreover, certain vectors are capable of controlling the expression of genes with which they are in operable linkage. In the present context, these vectors are referred to as "expression vectors". As mentioned above, they are capable of autonomous replication or may be integrated partly or completely into the host genome. Expression vectors, which are suitable for DNA recombination techniques usually, take the form of plasmids. In the present description, "plasmid" and "vector", can be used interchangeably since the plasmid is the most frequently used form of a vector. However, the invention is also intended to encompass these other forms of expression vectors, such as viral vectors, which exert similar functions. The term vector is furthermore also to encompass other vectors which are known to the skilled worker, such as phages, viruses such as SV40, CMV, TMV, transposons, IS elements, phasmids, phagemids, cosmids, and linear or circular DNA.
[0542] In a recombinant expression vector, "operable linkage" means that the nucleic acid molecule of interest is linked to the regulatory signals in such a way that expression of the genes is possible: they are linked to one another in such a way that the two sequences fulfill the predicted function assigned to the sequence (for example in an in-vitro transcription/translation system, or in a host cell if the vector is introduced into the host cell).
[0543] The term "regulatory sequence" is intended to comprise promoters, enhancers and other expression control elements (for example polyadenylation signals). These regulatory sequences are described, for example, in Goeddel: Gene Expression Technology: Methods in Enzymology 185, Academic Press, San Diego, Calif. (1990), or see: Gruber and Crosby, in: Methods in Plant Molecular Biology and Biotechnolgy, CRC Press, Boca Raton, Fla., Ed.: Glick and Thompson, chapter 7, 89-108, including the references cited therein. Regulatory sequences encompass those, which control the constitutive expression of a nucleotide sequence in many types of host cells and those which control the direct expression of the nucleotide sequence in specific host cells only, and under specific conditions. The skilled worker knows that the design of the expression vector may depend on factors such as the selection of the host cell to be transformed, the extent to which the protein amount is reduced, and the like. A preferred selection of regulatory sequences is described above, for example promoters, terminators, enhancers and the like. The term regulatory sequence is to be considered as being encompassed by the term regulatory signal. Several advantageous regulatory sequences, in particular promoters and terminators are described above. In general, the regulatory sequences described as advantageous for nucleic acid construct suitable for expression are also applicable for vectors.
[0544] As an alternative, the nucleic acid sequences can be expressed in insect cells using baculovirus expression vectors. Baculovirus vectors which are available for expressing proteins in cultured insect cells (for example Sf9 cells) encompass the pAc series (Smith et al. (1983) Mol. Cell Biol. 3:2156-2165) and the pVL series (Lucklow and Summers (1989) Virology 170:31-39). The abovementioned vectors are only a small overview of potentially suitable vectors. Further plasmids are known to the skilled worker and are described, for example, in: Cloning Vectors (Ed. Pouwels, P. H., et al., Elsevier, Amsterdam-New York-Oxford, 1985, ISBN 0 444 904018). Further suitable expression systems for prokaryotic and eukaryotic cells, see the chapters 16 and 17 by Sambrook, J., Fritsch, E. F., and Maniatis, T., Molecular Cloning: A Laboratory Manual, 2nd Edition, Cold Spring Harbor Laboratory, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y., 1989.
[0545] Accordingly, one embodiment of the invention relates to a vector comprising a nucleic acid molecule for use in the process according to the invention or a nucleic acid construct for use in the method of the invention, e.g. the nucleic acid molecule or the nucleic acid construct of the invention. Said vector is useful for the transfection or transformation of host cells in order to provide the expression of the polypeptide according to the invention. Advantageously said nucleic acid molecule is in an operable linkage with regulatory sequences for the expression in a prokaryotic or eukaryotic, or in a prokaryotic and an eukaryotic host. Furthermore vectors which are suitable for homologous recombination are also within the scope of the invention.
[0546] Accordingly, one embodiment of the invention relates to a host cell, which has been transformed stably or transiently with the vector usable in the process of the invention, in particular with the vector according to the invention or the nucleic acid molecule according to the invention or the nucleic acid construct according to the invention, whereby the membrane of the host has not shown endogenously the activity of the polypeptide of the invention.
[0547] A further embodiment of the invention also relates to a method for the generation of a transgenic host cell, e.g. a eukaryotic or prokaryotic host or host cell, preferably a transgenic mammalian cell which comprises introducing, into the host cell, the nucleic acid construct according to the invention, the vector according to the invention, or the nucleic acid molecule according to the invention, whereby the membrane of the host has not shown endogenously the activity of the polypeptide of the invention.
[0548] Vector DNA can be introduced into prokaryotic or eukaryotic cells via conventional transformation or transfection techniques. The terms "transformation" and "transfection" include conjugation and transduction and, as used in the present context, are intended to encompass a multiplicity of prior-art methods for introducing foreign nucleic acid molecules (for example DNA) into a host cell, including calcium phosphate coprecipitation or calcium chloride coprecipitation, DEAE-dextran-mediated transfection, PEG-mediated transfection, lipofection, natural competence, chemically mediated transfer, electroporation or particle bombardment. Suitable methods for the transformation or transfection of host cells, including plant cells, can be found in Sambrook et al. (Molecular Cloning: A Laboratory Manual., 2nd Ed., Cold Spring Harbor Laboratory, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y., 1989) and in other laboratory handbooks such as Methods in Molecular Biology, 1995, Vol. 44, Agrobacterium protocols, Ed.: Gartland and Davey, Humana Press, Totowa, N.J.
[0549] To select for the successful transfer of a nucleic acid molecule, vector or nucleic acid construct into a host organism, it is advantageous to use marker genes as have already been described above in detail. It is known of the stable or transient integration of nucleic acids into plant cells that only a minority of the cells takes up the foreign DNA and, if desired, integrates it into its genome, depending on the expression vector used and the transfection technique used. To identify and select these integrants, a gene encoding for a selectable marker (as described above, for example resistance to antibiotics) is usually introduced into the host cells together with the gene of interest. Preferred selectable markers are, for example, markers, which encode genes involved in a resistance, preferably gene for resistance to antibiotics, or in biosynthetic pathways of, for example, sugars or amino acids, such as β-galactosidase, ura3 or ilv2. Markers, which encode genes such as luciferase, gfp or other fluorescence genes, are likewise suitable. These markers and the aforementioned markers can be used in mutants in whom these genes are not functional since, for example, they have been deleted by conventional methods. Furthermore, nucleic acid molecules, which encode a selectable marker, can be introduced into a host cell on the same vector as those, which encode the nucleotide acid molecule used in the process or else in a separate vector. Cells which have been transfected stably with the nucleic acid molecule introduced can be identified for example by selection (for example, cells which have integrated the selectable marker survive whereas the other cells die).
[0550] "Reporter genes" encode readily quantifiable proteins, as the above mentioned marker genes. The transformation efficacy or the expression site or timing can be assessed by means of these genes via growth assay, fluorescence assay, chemoluminescence assay, bioluminescence assay or resistance assay or via a photometric measurement (intrinsic color) or enzyme activity. Very especially preferred in this context are reporter proteins (Schenborn E, Groskreutz D. Mol Biotechnol. 1999; 13(1):29-44) such as the "green fluorescent protein" (GFP) (Gerdes H H and Kaether C, FEBS Lett. 1996; 389(1):44-47; Chui W L et al., Curr Biol 1996, 6:325-330; Leffel S M et al., Biotechniques. 23(5):912-8, 1997), chloramphenicol acetyltransferase, a luciferase (Giacomin, Plant Sci 1996, 116:59-72; Scikantha, J Bact 1996, 178:121; Millar et al., Plant Mol Biol Rep 1992 10:324-414), and luciferase genes in general, beta-galactosidase or beta-glucuronidase (Jefferson et al., EMBO J. 1987, 6, 3901-3907) or the Ura3 gene.
[0551] "Selection markers" confer resistance to antibiotics or other toxic compounds: examples which may be mentioned in this context are the neomycin phosphotransferase gene, which confers resistance to the aminoglycoside antibiotics neomycin (G 418), kanamycin, paromycin (Deshayes A et al., EMBO J. 4 (1985) 2731-2737), the sul gene encoding a mutated dihydropteroate synthase (Guerineau F et al., Plant Mol Biol. 1990; 15(1):127-136), the hygromycin B phosphotransferase gene (Gen Bank Accession NO: K 01193) and the she ble resistance gene, which confers resistance to the bleomycin antibiotics, e.g. zeocin. Further examples of selection marker genes are genes which confer resistance to 2-deoxyglucose-6-phosphate (WO 98/45456) or phosphinothricin and the like, or those which confer a resistance to antimetabolites, for example the dhfr gene (Reiss, Plant Physiol. (Life Sci. Adv.) 13 (1994) 142-149). Examples of other genes which are suitable are trpB or hisD (Hartman S C and Mulligan R C, Proc Natl Acad Sci U S A. 85 (1988) 8047-8051). Another suitable gene is the mannose phosphate isomerase gene (WO 94/20627), the ODC (ornithine decarboxylase) gene (McConlogue, 1987 in: Current Communications in Molecular Biology, Cold Spring Harbor Laboratory, Ed.) or the Aspergillus terreus deaminase (Tamura K et al., Biosci Biotechnol Biochem. 59 (1995) 2336-2338).
[0552] In one embodiment the vector or nucleic acid construct of the invention comprises a nucleic acid sequence coding of an affinity tag. "Affinity tag": this refers to a peptide or polypeptide whose coding nucleic acid sequence can be fused to the nucleic acid sequence encoding the polypeptide of the invention either directly or by means of a linker, using customary cloning techniques. The affinity tag serves for the isolation, concentration and/or specific purification of the recombinant target protein by means of affinity chromatography from total cell extracts. The abovementioned linker can advantageously contain a protease cleavage site (for example for thrombin or factor Xa), whereby the affinity tag can be cleaved from the target protein when required. Examples of usual affinity tags are the "His tag" for example from Quiagen, Hilden, "Strep tag", the "Myc tag" (Invitrogen, Carlsberg), the tag from New England Biolabs which consists of a chitin-binding domain and an intein, the maltose-binding protein (pMal) from New England Biolabs, and what is known as the CBD tag from Novagen. In this context, the affinity tag can be attached to the 5' or the 3' end of the coding nucleic acid sequence with the sequence encoding the target protein.
[0553] The nucleic acid molecules of the invention can be used for generating hybridization probes via which functional equivalents of the nucleic acid sequences according to the invention can be isolated. The generation of these probes and the experimental procedure are known. For example, this involves the specific generation of radioactive or nonradioactive probes by means of PCR and the use of suitably labeled oligonucleotides, followed by hybridization experiments. The techniques required for this purpose are mentioned, for example, in T. Maniatis, E. F. Fritsch and J. Sambrook, Molecular Cloning: A Laboratory Manual, Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y. (1989). The probes in question can furthermore be modified by standard techniques (Lit. SDM or random mutagenesis) in such a way that they can be employed for further purposes, for example as probe which hybridizes specifically with mRNA and the corresponding coding sequences, in order to analyze the corresponding sequences in other organisms.
[0554] The probe can be used for example for screening a genomic library or a cDNA library of the insect in question or in a computer search for analogous sequences in electronic databases.
[0555] "Genetic control sequence": the term "genetic control sequence" is considered as equivalent to the term "regulatory sequence" and describes sequences which have an effect on the transcription and, if appropriate, translation of the nucleic acids according to the invention in prokaryotic or eukaryotic organisms. Examples are promoters, terminators or what are known as "enhancer" sequences. In addition to these control sequences, or instead of these sequences, the natural regulation of these sequences may still be present before the actual structural genes and may, if appropriate, have been genetically modified in such a way that the natural regulation is switched off and the expression of the target gene has been modified, that is to say increased or reduced. The choice of the control sequence depends on the host organism or starting organism. Genetic control sequences furthermore also comprise the 5'-untranslated region, introns or the noncoding 3' region of genes. Control sequences are furthermore understood as meaning those which make possible homologous recombination or insertion into the genome of a host organism or which permit removal from the genome.
[0556] "Knock-out transformants" refers to individual transgenic organism in which a specific gene has been inactivated, respectively the activity of a specific gene has been decreased, doew regulated, reduced or deleted in a targeted fashion by means of transformation.
[0557] "Natural genetic environment" refers to the natural chromosomal locus in the organism of origin. In the case of a genomic library, the natural genetic environment of the nucleic acid sequence is preferably retained at least in part. The environment flanks the nucleic acid sequence at least 5' or 3' and has a sequence length of at least 50 bp, preferably at least 100 bp, especially preferably at least 500 bp, very especially preferably at least 1 000 bp, and most preferably at least 5 000 bp.
[0558] "Reaction time" refers to the time required for carrying out an activity assay until a significant finding regarding an activity is obtained; it depends both on the specific activity of the protein employed in the assay and on the method used and the sensitivity of the apparatus used. The skilled worker is familiar with the determination of the reaction times. In the case of methods for identifying fungicidally active compounds which are based on photometry, the reaction times are generally between >0 and 360 minutes.
[0559] "Recombinant DNA" describes a combination of DNA sequences which can be generated by recombinant DNA technology.
[0560] "Recombinant DNA technology": generally known techniques for fusing DNA sequences (for example described in Sambrook et al., 1989, Cold Spring Harbor, N.Y., Cold Spring Harbor Laboratory Press).
[0561] "Origin of Replication" ensure the multiplication of the expression cassettes or vectors according to the invention in microorganisms and yeasts, for example the pBR322 ori, ColE1 or the 1315 A on in E. coli (Sambrook et al.: Molecular Cloning. A Laboratory Manual, 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y., 1989) and the ARS1 on in yeast (Nucleic Acids Research, 2000, 28(10): 2060-2068).
[0562] "Target/target protein": the polypeptide of the invention, a protein, with the activity of i) a potassium ion channel and/or its accessory protein respectively, or
[0563] ii) a potassium ion channel and/or a Hyperkinetic beta subunit, preferably H-kv beta subunit A or C subtype, or
[0564] iii) a protein, with the activity of an octopamine receptor, or
[0565] iv) a potassium ion channel.
[0566] All of the targets or sites of action share the characteristic that the functional presence of the target protein is essential for the survival of the insect.
[0567] "Transformation" describes a process for introducing heterologous DNA into a prokaryotic or eukaryotic cell. A transformed cell describes not only the product of the transformation process per se, but also all of the transgenic progeny of the transgenic organism generated by the transformation process.
[0568] "Transgenic": referring to a nucleic acid sequence, an expression cassette or a vector comprising a nucleic acid sequence according to the invention or an organism transformed with a nucleic acid sequence according to the invention, expression cassette or vector, the term transgenic describes all those constructs which have been generated by genetic engineering methods in which either the nucleic acid sequence of the target protein or a genetic control sequence linked operably to the nucleic acid sequence of the target protein or a combination of the abovementioned possibilities are not in their natural genetic environment or have been modified by recombinant methods. In this context, the modification can be achieved, for example, by mutating one or more nucleotide residues of the nucleic acid sequence in quest.
[0569] In one embodiment the present invention is directed to the use of the polypeptide, the membrane or the host cell of the invention as insecticidal target.
[0570] The deletion of the gene coding for insect voltage-gated potassium channel Sha1 (Shaker cognate 1 or Shaker-like) and/or its accessory protein KChIP (potassium channel-interacting protein) respectively in Drosophila melanogaster, or the inhibition of the activity of the voltage-gated potassium channel Sha1 (Shaker cognate 1 or Shaker-like) and/or its accessory protein KChIP (potassium channel-interacting protein) respectively is lethal for Drosophila melanogaster.
[0571] Accordingly, in one embodiment the present invention is directed to the use of a polypeptide encoded by a nucleic acid molecule selected from the group consisting of:
[0572] a) a nucleic acid molecule encoding the polypeptide shown in SEQ ID NO: 2, 6, 10, 14, 18, 22, 26 and/or 30;
[0573] b) a nucleic acid molecule shown in SEQ ID NO: 1, 5, 9, 13, 17, 21, 25 and/or 29;
[0574] c) a nucleic acid molecule, which, as a result of the degeneracy of the genetic code, can be derived from a polypeptide sequence according to SEQ ID NO: 2, 6, 10, 14, 18, 22, 26 and/or 30;
[0575] d) a nucleic acid molecule having at least 50% identity with the nucleic acid molecule sequence of a polynucleotide comprising the nucleic acid molecule shown in SEQ ID NO: 2, 6, 10, 14, 18, 22, 26 and/or 30;
[0576] e) a nucleic acid molecule encoding a polypeptide having at least 50% identity with the amino acid sequence of the polypeptide encoded by the nucleic acid molecule of (a) to (c) and having the activity of a voltage-gated potassium channel Sha1 (Shaker cognate 1 or Shaker-like) and/or its accessory protein KChIP (potassium channel-interacting protein) respectively;
[0577] f) nucleic acid molecule which hybridizes with a nucleic acid molecule of (a) to (c) under stringent hybridization conditions;
[0578] g) a nucleic acid molecule encoding a polypeptide which can be isolated with the aid of monoclonal or polyclonal antibodies made against a polypeptide encoded by one of the nucleic acid molecules of (a) to (e) and having the activity of a voltage-gated potassium channel Sha1 (Shaker cognate 1 or Shaker-like) and/or its accessory protein KChIP (potassium channel-interacting protein) respectively;
[0579] h) a nucleic acid molecule encoding a polypeptide comprising the consensus sequence as shown in SEQ ID NO: 33 and/or 34 respectively or one or more motifs selected from the group consisting of SEQ ID NO: 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54 and/or 55, and/or 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70 and/or 71 respectively;
[0580] i) nucleic acid molecule which comprises a polynucleotide, which is obtained by amplifying a cDNA library or a genomic library using the primers in SEQ ID NO: 7, 8; 9, 10; 11, 12; respectively;
[0581] and
[0582] j) a nucleic acid molecule which is obtainable by screening a suitable nucleic acid library under stringent hybridization conditions with a probe comprising a complementary sequence of a nucleic acid molecule of (a) or (b) or with a fragment thereof, having at least 15 nt, preferably 20 nt, 30 nt, 50 nt, 100 nt, 200 nt or 500 nt of a nucleic acid molecule complementary to a nucleic acid molecule sequence characterized in (a) to (e) and encoding a polypeptide and having the activity of a voltage-gated potassium channel Sha1 (Shaker cognate 1 or Shaker-like) and/or its accessory protein KChIP (potassium channel-interacting protein) respectively,
[0583] or a homologue thereof as insecticidal target.
[0584] In the case of the shaker channel and/or a Hyperkinetic beta subunit, the deletion of the gene coding for insect Shaker channel and/or a Hyperkinetic beta subunit, preferably H-kv beta subunit A or C subtype respectively in Drosophila melanogaster, or the inhibition of the activity of the Shaker channel and/or a Hyperkinetic beta subunit, preferably H-kv beta subunit A or C subtype respectively is lethal for Drosophila melanogaster.
[0585] Accordingly, in one embodiment the present invention is directed to the use of a polypeptide encoded by a nucleic acid molecule selected from the group consisting of:
[0586] a) a nucleic acid molecule encoding a polypeptide comprising the polypeptide shown in SEQ ID NO: 73, 75, 77, 79, 81, 83, 85 and/or 87;
[0587] b) a nucleic acid molecule comprising the nucleic acid molecule shown in SEQ ID NO: 72, 74, 76, 78, 80, 82, 84 and/or 86;
[0588] c) a nucleic acid molecule, which, as a result of the degeneracy of the genetic code, can be derived from a polypeptide comprising a polypeptide sequence according to SEQ ID NO: 73, 75, 77, 79, 81, 83, 85 and/or 87;
[0589] d) a nucleic acid molecule having at least 50% identity with the nucleic acid molecule sequence of a polynucleotide comprising the nucleic acid molecule shown in SEQ ID NO: 73, 75, 77, 79, 81, 83, 85 and/or 87;
[0590] e) a nucleic acid molecule encoding a polypeptide having at least 50% identity with the amino acid sequence of the polypeptide encoded by the nucleic acid molecule of (a) to (c) and having the activity of a Shaker channel and/or a Hyperkinetic beta subunit, preferably H-kv beta subunit A or C subtype respectively;
[0591] f) nucleic acid molecule which hybridizes with a nucleic acid molecule of (a) to (c) under stringent hybridization conditions;
[0592] g) a nucleic acid molecule encoding a polypeptide which can be isolated with the aid of monoclonal or polyclonal antibodies made against a polypeptide encoded by one of the nucleic acid molecules of (a) to (e) and having the activity of a Shaker channel and/or a Hyperkinetic beta subunit, preferably H-kv beta subunit A or C subtype respectively;
[0593] h) a nucleic acid molecule encoding a polypeptide comprising the consensus sequence as shown in SEQ ID NO: 102 and/or 103 respectively or one or more motifs selected from the group consisting of SEQ ID NO: 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124 and/or 125 and/or 126, 127 and/or 128 respectively;
[0594] i) nucleic acid molecule which comprises a polynucleotide, which is obtained by amplifying a cDNA library or a genomic library using the primers in SEQ ID NO: 88, 89; 90, 91; 92, 93; 94, 95; 96, 97; 98, 99 and/or 100, 101 respectively;
[0595] and
[0596] j) a nucleic acid molecule which is obtainable by screening a suitable nucleic acid library under stringent hybridization conditions with a probe comprising a complementary sequence of a nucleic acid molecule of (a) or (b) or with a fragment thereof, having at least 15 nt, preferably 20 nt, 30 nt, 50 nt, 100 nt, 200 nt or 500 nt of a nucleic acid molecule complementary to a nucleic acid molecule sequence characterized in (a) to (e) and encoding a polypeptide and having the activity of a Shaker channel and/or a Hyperkinetic beta subunit, preferably H-kv beta subunit A or C subtype respectively,
[0597] or a homologue thereof as insecticidal target.
[0598] In the case of the G-protein coupled receptor, the deletion of the gene coding for insect octopamine receptor selected from the group consisting of oa2, preferably from Drosophila melanogaster, Oamb, Oct-beta-2R and Oct-beta-3R in Drosophila melanogaster or other insects, or the inhibition of the activity of the octopamine receptor selected from the group consisting of oa2, preferably from Drosophila melanogaster, Oamb, Oct-beta-2R and Oct-beta-3R is lethal for Drosophila melanogaster or other insect respectively.
[0599] Accordingly, in one embodiment the present invention is directed to the use of a polypeptide encoded by a nucleic acid molecule selected from the group consisting of
[0600] a) a nucleic acid molecule encoding the polypeptide shown in SEQ ID NO: 130, 134, 138, 142, 146, 150, 154, 158, 162, 166, 170 and/or 174;
[0601] b) a nucleic acid molecule shown in SEQ ID NO: 129, 133, 137, 141, 145, 149, 153, 157, 161, 165, 169 and/or 173;
[0602] c) a nucleic acid molecule, which, as a result of the degeneracy of the genetic code, can be derived from a polypeptide comprising a polypeptide sequence according to SEQ ID NO: 130, 134, 138, 142, 146, 150, 154, 158, 162, 166, 170 and/or 174;
[0603] d) a nucleic acid molecule having at least 50% identity with the nucleic acid molecule sequence of a polynucleotide comprising the nucleic acid molecule shown in SEQ ID NO: 130, 134, 138, 142, 146, 150, 154, 158, 162, 166, 170 and/or 174;
[0604] e) a nucleic acid molecule encoding a polypeptide having at least 50% identity with the amino acid sequence of the polypeptide encoded by the nucleic acid molecule of (a) to (c) and having the activity of a octopamine receptor selected from the group consisting of oa2, preferably from Drosophila melanogaster, Oamb, Oct-beta-2R and Oct-beta-3R;
[0605] f) nucleic acid molecule which hybridizes with a nucleic acid molecule of (a) to (c) under stringent hybridization conditions;
[0606] g) a nucleic acid molecule encoding a polypeptide which can be isolated with the aid of monoclonal or polyclonal antibodies made against a polypeptide encoded by one of the nucleic acid molecules of (a) to (e) and having the activity of a octopamine receptor selected from the group consisting of oa2, preferably from Drosophila melanogaster, Oamb, Oct-beta-2R and Oct-beta-3R;
[0607] h) a nucleic acid molecule encoding a polypeptide comprising the consensus sequence as shown in SEQ ID NO: 177, 178 and/or 179 respectively or one or more motifs selected from the group consisting of SEQ ID NO: 180, 181, 182, 183, 184, 185, 186, 187, 188, 189 and/or 190, and/or 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207 and/or 208, and/or 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225 and/or 226 respectively;
[0608] i) nucleic acid molecule which comprises a polynucleotide, which is obtained by amplifying a cDNA library or a genomic library using the primers in SEQ ID NO: 131, 132; 135, 136; 139, 140; 143, 144; 147, 148; 151, 152; 155, 156, 159, 160; 163, 164; 167, 168; 171, 172 and/or 175, 176;
[0609] and
[0610] j) a nucleic acid molecule which is obtainable by screening a suitable nucleic acid library under stringent hybridization conditions with a probe comprising a complementary sequence of a nucleic acid molecule of (a) or (b) or with a fragment thereof, having at least 15 nt, preferably 20 nt, 30 nt, 50 nt, 100 nt, 200 nt or 500 nt of a nucleic acid molecule complementary to a nucleic acid molecule sequence characterized in (a) to (e) and encoding a polypeptide and having the activity of a octopamine receptor selected from the group consisting of oa2, preferably from Drosophila melanogaster, Oamb, Oct-beta-2R and Oct-beta-3R,
[0611] or a homologue thereof as insecticidal target.
[0612] In the case of the SK-channel, the deletion of the gene coding for insect small-conductance Ca2+-activated potassium channel in Drosophila melanogaster, or the inhibition of the activity of the insect small-conductance Ca2+-activated potassium channel is lethal for Drosophila melanogaster.
[0613] Accordingly, in one embodiment the present invention is directed to the use of a polypeptide encoded by a nucleic acid molecule selected from the group consisting of:
[0614] a) a nucleic acid molecule encoding the polypeptide shown in SEQ ID NO: 228, 230, 232;
[0615] b) a nucleic acid molecule shown in SEQ ID NO: 227, 229, 231;
[0616] c) a nucleic acid molecule, which, as a result of the degeneracy of the genetic code, can be derived from a polypeptide sequence according to SEQ ID NO: 228, 230, 232;
[0617] d) a nucleic acid molecule having at least 50% identity with the nucleic acid molecule sequence of a polynucleotide comprising the nucleic acid molecule shown in SEQ ID NO: 228, 230, 232;
[0618] e) a nucleic acid molecule encoding a polypeptide having at least 50% identity with the amino acid sequence of the polypeptide encoded by the nucleic acid molecule of (a) to (c) and having the activity of a small-conductance Ca2+-activated potassium channel;
[0619] f) nucleic acid molecule which hybridizes with a nucleic acid molecule of (a) to (c) under stringent hybridization conditions;
[0620] g) a nucleic acid molecule encoding a polypeptide which can be isolated with the aid of monoclonal or polyclonal antibodies made against a polypeptide encoded by one of the nucleic acid molecules of (a) to (e) and having the activity of a small-conductance Ca2+-activated potassium channel;
[0621] h) a nucleic acid molecule encoding a polypeptide comprising the consensus sequence as shown in SEQ ID NO: 239 or one or more motifs selected from the group consisting of SEQ ID NO: 240, 241, 242, 243, 244, 245, 246, 247, 248, 249, 250, 251, 252 and 253;
[0622] i) nucleic acid molecule which comprises a polynucleotide, which is obtained by amplifying a cDNA library or a genomic library using the primers in SEQ ID NO: 233, 234, 235, 236; and 237, 238; respectively;
[0623] and
[0624] j) a nucleic acid molecule which is obtainable by screening a suitable nucleic acid library under stringent hybridization conditions with a probe comprising a complementary sequence of a nucleic acid molecule of (a) or (b) or with a fragment thereof, having at least 15 nt, preferably 20 nt, 30 nt, 50 nt, 100 nt, 200 nt or 500 nt of a nucleic acid molecule complementary to a nucleic acid molecule sequence characterized in (a) to (e) and encoding a polypeptide and having the activity of a small-conductance Ca2+-activated potassium channel,
[0625] or a homologue thereof as insecticidal target.
[0626] The invention furthermore relates to nucleic acid construct or expression cassettes comprising
[0627] a) genetic control sequences in operable linkage with a nucleic acid sequence encompassing
[0628] i) a nucleic acid sequence with the nucleic acid sequence shown in SEQ ID NO 1, 5, 9, 13, 17, 21, 25 and/or 29, in the case of the shaker channel and/or a Hyperkinetic beta subunit SEQ ID NO 72, 74, 76, 78, 80, 82, 84 and/or 86, in the case of the G-protein coupled receptor SEQ ID NO 129, 133, 137, 141, 145, 149, 153, 157, 161, 165, 169 and/or 173, and in the case of the SK-channel SEQ ID NO 227, 229, 231; or
[0629] ii) a nucleic acid sequence which, on the basis of the degeneracy of the genetic code, can be derived from the amino acid sequence shown in SEQ ID NO 2, 6, 10, 14, 18, 22, 26 and/or 30, in the case of the shaker channel and/or a Hyperkinetic beta subunit SEQ ID NO 73, 75, 77, 79, 81, 83, 85 and/or 87, in the case of the G-protein coupled receptor SEQ ID NO 130, 134, 138, 142, 146, 150, 154, 158, 162, 166, 170 and/or 174, and in the case of the SK-channel SEQ ID NO 228, 230, 232 by back translation; or
[0630] iii) a functional equivalent of the nucleic acid sequence SEQ ID NO 1, 5, 9, 13, 17, 21, 25 and/or 29, in the case of the shaker channel and/or a Hyperkinetic beta subunit SEQ ID NO 72, 74, 76, 78, 80, 82, 84 and/or 86, in the case of the G-protein coupled receptor SEQ ID NO 129, 133, 137, 141, 145, 149, 153, 157, 161, 165, 169 and/or 173, and in the case of the SK-channel SEQ ID NO 227, 229, 231;
[0631] and
[0632] b) additional functional elements; or
[0633] c) a combination of a) and b) and to the use of the nucleic acid construct or the expression cassettes comprising
[0634] a) genetic control sequences in operable linkage with a nucleic acid sequence according to the invention;
[0635] b) additional functional elements; or
[0636] c) a combination of a) and b) in "in vitro" or "in vivo" assay systems.
[0637] The invention furthermore relates to the use of the abovementioned embodiments of the nucleic acid construct or the expression cassettes for expressing the polypeptide of the invention for in-vitro or in-vivo assay systems.
[0638] In one embodiment the present invention is directed to the use of the polypeptide, the membrane or the host cell of the invention for identifying compounds with insecticidal activity.
[0639] The present invention furthermore relates to the use of a polypeptide of the invention in a method for identifying insecticidal compounds.
[0640] A preferred embodiment of the method according to the invention comprises the following steps:
[0641] i. bringing a polypeptide of the invention into contact with one or more test compounds under conditions which permit the test compound(s) to bind to the polypeptide of the invention,
[0642] ii. detecting whether the test compound binds the polypeptide of the invention set forth in i); or
[0643] iii. detecting whether the test compound reduces or inhibits or blocks the activity of the polypeptide of the invention set forth in i); or
[0644] iv. detecting whether the test compound reduces or inhibits or blocks the transcription, translation or expression of the polypeptide with the activity of
[0645] 1. the voltage-gated potassium channel Sha1 (Shaker cognate 1 or Shaker-like) and/or its accessory protein KChIP (potassium channel-interacting protein) respectively set forth in i), or
[0646] 2. the Shaker channel and/or a Hyperkinetic beta subunit, preferably H-kv beta subunit A or C subtype respectively set forth in i), or
[0647] 3. the octopamine receptor selected from the group consisting of oa2, preferably from Drosophila melanogaster, Oamb, Oct-beta-2R and Oct-beta-3R set forth in i), or
[0648] 4. the insect small-conductance Ca2+-activated potassium channel set forth in i).
[0649] The detection in accordance with step ii or iii of the above method regarding the activity of the polypeptide of the invention can be assessed using a variety of in vitro and in vivo assays, e. g., measuring current, measuring membrane potential, measuring ion flow, e. g., potassium or rubidium, measuring potassium concentration, measuring second messengers and transcription levels, using potassium-dependent yeast growth assays, and using e. g., voltage-sensitive dyes, radioactive tracers, and patch-clamp electrophysiology.
[0650] In the case of the G-protein coupled receptor, the detection in accordance with step ii or iii of the above method regarding the activity of the polypeptide of the invention can be assessed using a variety of in vitro and in vivo assays, e. g., measuring current, measuring membrane potential, measuring ion' flow, e. g., calcium, preferably measuring calcium concentration, measuring secand messengers and transcription levels, using potassium-dependent yeast growth assays, and using e. g., calcium concentration sensitive dyes or radioactive tracers.
[0651] The detection in accordance with step ii or iii of the above method can be effected using techniques which identify the interaction between protein and ligand. In this context, either the test compound or the polypeptide can contain a detectable label such as, for example, a fluorescent label, a radioisotope, a chemiluminescent label or an membrane or potentiometric label. Examples of labels are selected from the group consisting blue membrane potential dye from Molecular Devices, ANEP (AminoNaphthylEthenylPyridinium) dyes like di-4-ANEPPS, di-8-ANEPPS, di-2-ANEPEQ+, di-8-ANEPPQ, di-12-ANEPPQ; RH dyes (originally synthesized by Rina Hildesheim), including a serie of dialkylaminophenylpolyenylpyridinium dyes from Molecular
[0652] Probes like RH 414 (T-1111), RH 795 (R-649) and RH 237 (S-1109). RH 421 (S-1108), or other dyes from Molecular Probes based on Carbocyanine and Oxonol as described in the Seventh Edition of Molecular Probes' Handbook of Fluorescent Probes and Research Chemicals published in 1999.
[0653] In the case of the shaker channel and/or a Hyperkinetic beta subunit, in one embodiment of the invention the method of detection whether the test compound reduces or inhibits or blocks the activity of the polypeptide of the invention comprises subjecting CHO-cells stably transfected with a insect Shaker channel and/or a Hyperkinetic beta subunit, preferably H-kv beta subunit A or C subtype respectively, preferably selected from the group consisting of SEQ ID NOs: 72, 74, 76, 78, 80, 82, 84 and/or 86, to
[0654] loading with at least one of the above mentioned dyes, preferably blue membrane potential dye from Molecular Devices, for 0.1-3 hours, preferably 0.5-1 hours, preferably 0.45 hours, activating the Shaker channel and/or a Hyperkinetic beta subunit, preferably H-kv beta subunit A or C subtype respectively by increasing the extrcellular level of KCl, in a concentration of the EC50 value of 1-120 mM, preferably 10-60 mM, more preferably 50 mM KCl, adding the compound suspected to have the ability to inhibit the activity of the channel, preferably in a concentration of 1 μM-100 mM, 10-10000 μM, preferably 100-1000 μM measuring the luminescence, fluorescence,
[0655] comparing the data of the luminescence/fluorescence of the dye with a control and determining whether the tested compound has the ability to inhibit the activity of the channel.
[0656] In the case of the G-protein coupled receptor, the detection in accordance with step ii or iii of the above method can be effected using techniques which identify the interaction between protein and ligand. In this context, either the test compound or the polypeptide can contain a detectable label such as, for example, a fluorescent label, a radioisotope, a chemiluminescent label or an membrane or potentiometric label. Examples of labels are selected from the group of calcium concentration sensitive dyes, e.g. Fluo-4 Calcium Crimson®, Calcium Green®, Calcium Orange®, Calcium Yellow®, Fura Red®, Oregon Green®, Rhod-3, X-rhod-5F, Fura-2, bis-fura-2, fluo-5F, fluo-5N, fura dextran, fura-4F, fura-5F, fura-6F, fura-FF, fura-FF, quin-2, rhod dextran, rhod-2, rhod-5N or rhod-FF or other dyes from Molecular Probes based on Carbocyanine and Oxonol as described in the Seventh Edition of Molecular Probes' Handbook of Fluorescent Probes and Research Chemicals published in 1999.
[0657] In the case of the SK-channel, in one embodiment of the invention the method of detection whether the test compound reduces or inhibits or blocks the activity of the polypeptide of the invention comprises subjecting CHO-cells stably transfected with a insect small-conductance Ca2+-activated potassium channel, preferably selected from the group consisting of SEQ ID NOs: 227, 229, 231, to
[0658] loading with at least one of the above mentioned dyes, preferably blue membrane potential dye from Molecular Devices, for 2-6 hours, preferably -5 hours, preferably 4 hours, activating the small-conductance Ca2+-activated potassium channel with a ionophore, preferably ionomycin, in a concentration of the EC50 value of 100-500 nM, more preferably 200 nM, meaning incubation the cells in a concentration of 1-5 μM,
[0659] adding the compound suspected to have the ability to inhibit the activity of the channel in a concentration of 5-50 5-20 μM, preferably 10 μM measuring the luminescence, fluorescence
[0660] comparing the data the luminescence/fluorescence of the dye with a control and determining whether the tested compound has the ability to inhibit the activity of the channel.
[0661] In one embodiment of the invention the method of detection whether the test compound reduces or inhibits or blocks the activity of the polypeptide of the invention comprises subjecting CHO-cells stably transfected with a insect voltage-gated potassium channel Sha1 (Shaker cognate 1 or Shaker-like) and/or its accessory protein KChIP (potassium channel-interacting protein) respectively, preferably selected from the group consisting of SEQ ID NOs: 1, 5, 9, 13, 17, 21, 25 and/or 29, to
[0662] loading with at least one of the above mentioned dyes, preferably blue membrane potential dye from Molecular Devices, for 0.5-3 hours, preferably 1.5 hours, preferably 2-2.5 hours, activating the voltage-gated potassium channel Sha1 (Shaker cognate 1 or Shaker-like) and/or its accessory protein KChIP (potassium channel-interacting protein) respectively by increasing the extracellular level of KCl, in a concentration of the EC50 value of 10-120 mM, preferably 10-60 mM, more preferably 30 mM KCl,
[0663] adding the compound suspected to have the ability to inhibit the activity of the channel in a concentration of 1-200 μM, 5-100 μM, preferably 25-30 μM measuring the luminescence, fluorescence
[0664] comparing the data the luminescence/fluorescence of the dye with a control
[0665] and determining whether the tested compound has the ability to inhibit the activity of the channel.
[0666] The compound suspected of having the ability to inhibit the activity of the polypeptide of the invention is added directly to the bath solution.
[0667] Alternatively the detection in accordance with step ii or iii of the above method can be effected using the patch clamp technique.
[0668] Several variations of the basic technique can be applied selected from the group consisting of inside-out, outside-out, cell-attached, both excised patch, whole-cell patch and perforated patch techniques.
[0669] The subsequent detection depends on the label and is known to the skilled worker.
[0670] In one embodiment of the invention the method of detection whether the test compound reduces or inhibits or blocks the activity of the polypeptide of the invention comprises subjecting CHO-cells stably transfected with a insect voltage-gated potassium channel Sha1 (Shaker cognate 1 or Shaker-like) and/or its accessory protein KChIP (potassium channel-interacting protein) respectively, preferably selected from the group consisting of SEQ ID NOs: 2, 6, 10, 14, 18, 22, 26 and/or 30, to the whole-cell configuration of the patch-clamp technique at room temperature (22-25° C.), using borosilicate glass capillaries with a resistances of 2-3 MOhm when filled with pipette solution and measured in bath solution, preferably compensating liquid junction potential between bath and pipette solution, measuring membrane current under whole-cell clamp, sampled at 2 kHz and filtered at 1 kHz, holding the cells at -70 mV and applying a family of 400 ms test voltage pulses starting from -100 to +130 mV in 10 mV increments every 2 sec, measuring the amplitude, as measured for the current-voltage relationship, and defining as the maximal outward current at a given depolarizing potential.
[0671] In the case of the shaker channel and/or a Hyperkinetic beta subunit, in one embodiment of the invention the method of detection whether the test compound reduces or inhibits or blocks the activity of the polypeptide of the invention comprises subjecting CHO-cells stably transfected with a insect Shaker channel and/or a Hyperkinetic beta subunit, preferably H-kv beta subunit A or C subtype respectively, preferably selected from the group consisting of SEQ ID NOs: 73, 75, 77, 79, 81, 83, 85 and/or 87, to the whole-cell configuration of the patch-clamp technique at room temperature (22-25° C.). The whole-cell voltage-clamp method of the invention comprises for data acquisition and further analysis, using the EPC10 digitally controlled amplifier in combination with PATCHMASTER software (HEKA Electronics, Lambrect, Germany). The EPC10 provides automatic subtraction of capacitance and leakage currents by mean of prepulse. The data are filtered at 66.7 KHz (-3 dB, 8-pole Bessel lowpass) and digitized at 5 μs per point. The input resistance of the patch pipettes is 2.0-4.0 MΩ and the capacitances of the cells were 15.3±2.1 pF (n=45); the residual series resistances (after up to 80% compensation) are 4.2±0.4 MΩ. Correction for liquid junction potential is routinely applied. Membrane potential is clamped at -100 mV and currents are elicited by 50 ms depolarization pulses (0.1 Hz) from -60 mV to +100 mV (or +60 mV).
[0672] The compound suspected of having the ability to inhibit the activity of the polypeptide of the invention is added directly to the bath solution.
[0673] In one embodiment the subtraction of residual capacitance and leak current is performed with an on-line P/4 protocol by pClamp.
[0674] In the case of the G-protein coupled receptor, in one embodiment of the invention the method of detection whether the test compound reduces or inhibits or blocks the activity of the polypeptide of the invention comprises subjecting CHO-cells stably expressing the G-alpha-16 promiscuous
[0675] G protein and stably or transiently expressing a octopamine receptor selected from the group consisting of oa2, preferably from Drosophila melanogaster, Oamb, Oct-beta-2R and Oct-beta-3R, preferably selected from the group consisting of SEQ ID NOs: 129, 133, 137, 141, 145, 149, 153, 157, 161, 165, 169 and/or 173, to
[0676] loading with at least one of the above mentioned dyes, preferably Fluo-4, for 0.1-3 hours, preferably 0.5-2 hours, preferably 1 hour,
[0677] placing into the FLIPR and run using a two-additon protocol, whereby the test compounds, the compound suspected to have the ability to block or to activate the octopamine receptor, is to be added in the first addition and allowed to incubate for three minutes,
[0678] the activator octopamine is then to be introduced in the second addition at an EC80 concentration and the fluorescence read for two minutes. Controls will to be run for both additions. An increase in fluorescence above baseline in the first addition will indicate a possible activator and a reduced response or no increase in the second addition may indicate a possible inhibitor.
[0679] The subsequent detection depends on the label and is known to the skilled worker.
[0680] In the case of the SK-channel, in one embodiment of the invention the method of detection whether the test compound reduces or inhibits or blocks the activity of the polypeptide of the invention comprises subjecting CHO-cells stably transfected with a insect small-conductance Ca2+-activated potassium channel, preferably selected from the group consisting of SEQ ID NOs: 228, 230, 232, to the whole-cell configuration of the patch-clamp technique at room temperature (22-25° C.), using borosilicate glass capillaries with a resistances of 2-3 MOhm when filled with pipette solution and measured in bath solution, preferably compensating liquid junction potential between bath and pipette solution, measuring membrane current under whole-cell clamp, sampled at 2 kHz and filtered at 1 kHz, holding the cells at -70 mV and applying a family of 400 ms test voltage pulses starting from -100 to +130 mV in 10 mV increments every 2 sec, measuring the amplitude, as measured for the current-voltage relationship, and defining as the maximal outward current at a given depolarizing potential.
[0681] It is also possible, in the method according to the invention, to employ a plurality of test compounds in a method according to the invention. If a group of test compounds affects the target, then it is either possible directly to isolate the individual test compounds or to divide the group of test compounds into a variety of subgroups, for example when it consists of a multiplicity of different components, in order to reduce the number of the different test compounds in the method according to the invention. The method according to the invention is then repeated with the individual test compound or the relevant subgroup of test compounds. Depending on the complexity of the sample, the above-described steps can be carried out repeatedly, preferably until the subgroup identified in accordance with the method according to the invention only comprises a small number of test compounds, or indeed just one test compound.
[0682] The method according to the invention can advantageously be carried out as an HTS procedure.
[0683] HTS makes possible the simultaneous testing of a multiplicity of different compounds.
[0684] The quality of a high throughput screen is determined by two factors, the relative size of the assay window and the stability of this assay window from control experiment to control experiment (i.e. stability of assay signal across ˜20 assay screening plates of controls). This is expressed as the z' factor for the screen and the equation:
Z'=1-((3σmax+3σmin)/(Iμmax-μminI))- .
[0685] In the case of the SK-channel, the quality of a high throughput screen is determined by two factors, the relative size of the assay window, in this case signal from a fully activated channel minus a the signal from an unactivated channel (usually expressed in arbitrary units). The second factor is the stability of this assay window from control experiment to control experiment (i.e. stability of assay signal across ˜20 assay screening plates of controls). This is expressed as the z' factor for the screen and the equation:
Z'=1-[3*(σmax+σmin)/Abs(Ave(MAX)-Ave(MIN))].
[0686] A calculated Z'>0.5 is considered an excellent assay.
[0687] In the case of the shaker channel and/or a Hyperkinetic beta subunit, alternatively for the calculation of the Z' factor the following formula is used:
Z ' = 1 - ( 3 * ( ST . DEV agonist + ST . DEV Tyrode MEAN agonist - MEAN Tyrode ) ##EQU00001##
[0688] In this context preferred embodiments which are also suitable for high-throughput screening methods (HTS) in connection with the present invention, must be mentioned in particular: 1. In accordance with a preferred embodiment, the detection of step ii (and in the case of the SK-channel, variant 3) of the method according to the invention encompasses the following steps: Fluorescent resonance energy transfer (FRET) is based on the irradiation-free energy transfer between two spatially adjacent fluorescent molecules under suitable conditions. A prerequisite is that the emission spectrum of the donor molecule overlaps with the excitation spectrum of the acceptor molecule. By fluorescently labeling UGP and the test compounds, the binding can be measured by means of FRET (Cytometry 34, 1998, pp. 159-179). As an alternative, the method according to the invention may also take the form of the "displacement assay" described under 1. An especially suitable embodiment of FRET technology is "Homogeneous Time Resolved Fluorescence" (HTRF) as can be obtained from Packard BioScience. The compounds which are identified in this manner may be suitable as inhibitors.
[0689] 2. In accordance with a preferred embodiment, the detection of step ii (and in the case of the SK-channel, variant 3) of the method according to the invention comprises the following steps: The measurement of surface plasmon resonance is based on the change in the refractive index at a surface when a chemical compound binds to a protein which is immobilized to said surface. Since the change in the refractive index is identical for virtually all proteins and polypeptides for a defined change in the mass concentration at the surface, this method can be applied to any protein in principle (Lindberg et al. Sensor Actuators 4 (1983) 299-304; Malmquist Nature 361 (1993) 186-187). The measurement can be carried out for example with the automatic analyzer based on surface plasmon resonance which is available from Biacore (Freiburg) at a throughput of, currently, up to 384 samples per day. A method according to the invention can be designed directly for measuring the binding of the test compound to the UGP. As an alternative, the method according to the invention may also take the form of the "displacement assay" described under 1. The compounds identified in this manner may be suitable as inhibitors.
[0690] 3. In accordance with a preferred embodiment, the detection of step ii of the method according to the invention comprises the use of FLIPR Membrane Potential Assay Kits from Molecular Devices as disclosed in the examples. The method is based on the application of voltage-sensitive dyes on the FLIPR Fluorometric Imaging Plate Reader system, while showing good correlation with manual patch clamping data.
[0691] 4. In accordance with a preferred embodiment, the detection of step ii of the method according to the invention comprises the use of BIOMOL Compound Screening or the BioFocus compound screening, using two fluid addition method to permit the detection of activators and antagonists in a single experiment, or subsequent BIOMOL and BioFocus validation screening as disclosed in the examples.
[0692] In the case of the shaker channel and/or a Hyperkinetic beta subunit, the method of the invention puts a functional cellular-based assay for the Drosophila melanogaster Shaker channel at disposal, preferably developed in CHO-K1 cells by stable pure clone selection and functional characterization with Membrane Potential sensitive dye at FLIPR, preferably for FLIPR384 and/or FLIPRTETRA or both experiments, and electrophysiological techniques.
[0693] The generated assay completely fulfil the HTS requirements showing very high signal quality and reproducibility.
[0694] For the purposes of high-throughput screening, the following parameters are to be mentioned:
[0695] Activator KCl concentration: 50 mM (˜EC80) in Activation buffer
[0696] Reference Z': 0.60
[0697] Minimal acceptable Z' for single assay plate: 0.45
[0698] % Inhibition Threshold for Hit: 40%
[0699] All of the substances identified via the above mentioned methods can subsequently be checked for their insecticidal action in another embodiment of the method according to the invention.
[0700] Furthermore, there exists the possibility of detecting further candidates for insecticidal active ingredients by molecular modeling via elucidation of the three-dimensional structure of the polypeptide of the invention by x-ray structure analysis. The preparation of protein crystals required for x-ray structure analysis, and the relevant measurements and subsequent evaluations of these measurements, the detection of a binding site in the protein, and the prediction of potential inhibitor structures are known to the skilled worker. In principle, an optimization of the active compounds identified by the abovementioned methods is also possible via molecular modeling.
[0701] In one embodiment the activity of the polypeptide of the invention incubated with the test compound is compared with the activity of a control a wild type cell or a polypeptide of the invention which has not been incubated with a test compound in step iii.
[0702] In this context, compounds are selected in step (iii) which result in a significant decrease in the activity of the polypeptide of the invention, a reduction of at least 10%, advantageously at least 20%, 25%, 29% preferably at least 30%, especially preferably at least 50% and very especially preferably at least 70%, 80%, 90%, 95% 96%, 97%, 98%, 995, or 100% reduction (inhibition), being achieved.
[0703] The invention furthermore relates to compounds identified by the methods according to the invention. These compounds are hereinbelow referred to as "selected compounds". They have a molecular weight of less than 1 000 g/mol, advantageously less than 500 g/mol, preferably less than 400 g/mol, especially preferably less than 300 g/mol. Insecticidal active compounds have a Ki value of less than 1 μM, preferably less than 1 μM, especially preferably less than 0.1 μM, very especially preferably less than 0.01 μM.
[0704] Substances identified via the above mentioned methods and/or as shown in the examples are depicted in table I:
TABLE-US-00001 % Inhibi- Structure tion Mol Formula Mol Weight ##STR00001## 80-100% C6H8ClN7O 229.627 g/mol ##STR00002## C16H15F3N2O4 356.3 g/mol ##STR00003## C26H29N3O6 479.525 g/mol ##STR00004## 42.6 C15H13NO 223.28 ##STR00005## 35.2 C25H21NO5 415.45 ##STR00006## 32.5 C17H13ClF3NO 339.75 ##STR00007## 39.7 C17H14N2O 262.31 ##STR00008## 56.8 C14H13NOS 243.33 ##STR00009## 52.0 C15H15NOS 257.36 ##STR00010## 38.3 C15H14ClNO2S 307.8 ##STR00011## 56.8 C20H14ClFN2O 352.8 ##STR00012## 55.5 C23H17FN2O 356.4 ##STR00013## 60.3 C22H17F4NO4 435.38 ##STR00014## 32.0 C17H15ClFNO2 319.77 ##STR00015## 52.6 C16H12ClF2NO 307.73 ##STR00016## 46.0 C20H17ClN2OS 368.89 ##STR00017## 41.5 C21H15ClFNO4 399.81 ##STR00018## 32.1 C23H15F3N2O2 408.38 ##STR00019## 31.4 C20H15F3N2O2S 404.41 ##STR00020## 39.1 C21H15F3N2O2 384.36 ##STR00021## 50.4 C21H17F3N2O3 402.38 ##STR00022## 29.1 C22H17F3N2O2 398.39 ##STR00023## 40.1 C21H17F3N2O3 402.38 ##STR00024## 34.0 C20H14F4N2O2S 422.4 ##STR00025## 33.5 C17H13F4NO2 339.29 ##STR00026## 37.8 C19H15F3N2O2S2 424.47 ##STR00027## 42.5 C19H15FN2OS 338.41 ##STR00028## 29.3 C20H17FN2OS 352.43 ##STR00029## 48.5 C21H17FN2O 332.38 ##STR00030## 57.5 C23H19FN2O2 374.42 ##STR00031## 37.5 C19H14F2N2OS 356.4 ##STR00032## 42.7 C21H13F5N2O 404.34 ##STR00033## 54.9 C19H14F2N2O2 340.33 ##STR00034## 54.1 C22H16F2N2O2 378.38 ##STR00035## 58.0 C21H15FN2OS 362.43 ##STR00036## 33.0 C20H17ClN2O2 352.82 ##STR00037## 33.3 C22H17ClN2O2 376.85 ##STR00038## 36.4 C20H14Cl2N2O 369.25 ##STR00039## 31.2 C18H13F3N2O2 346.31 ##STR00040## 63.3 C23H17ClN2O 372.86 ##STR00041## 38.7 C18H16ClFN2O4 378.79 ##STR00042## 29.6 C21H21N3O2 347.42 ##STR00043## 52.7 C19H19FN2O3 342.37 ##STR00044## 38.7 C18H14ClN3O2 339.78 ##STR00045## 31.5 C18H15ClN2O4 358.78 ##STR00046## 30.2 C17H14F2N2O2 316.31 ##STR00047## 36.2 C24H22FN3O3 419.46 ##STR00048## 33.3 C24H23N3O2 385.47 ##STR00049## 41.6 C19H17FN2O3 340.36 ##STR00050## 41.3 C19H2OFN3O2 341.39 ##STR00051## 38.0 C19H15Cl2FN2O2S 425.31 ##STR00052## 30.2 C20H16F3N3O5S 467.43 ##STR00053## 35.0 C22H18F3N3O2S 445.47 ##STR00054## 33.3 C23H20F3N3O2S 459.49 ##STR00055## 30.2 C20H16F4N2O3S 440.42 ##STR00056## 35.2 C21H19FN2O2 350.4
[0705] The selected compounds are suitable for controlling insect pests as those mentioned above. Examples of those insects are the selected from the group consisting of Pterygota, Neopetra, Hemiptera, Coleoptera, Diptera, Homoptera, Tenebrionoidea, Tenebrionidae, Tenebrio, Sternorrhyncha, Aphidina, Brachycera, Drosophilidae, Drosophilinae and Drosophila, preferably in the case of the SK-channel Green Peach Aphid (Myzus persica) and/or Red Flower Beetle (Tribolium castaneum).
[0706] The selected compounds are suitable for controlling insect pests in agriculture, for protection of crops, forests, urban trees, rangelands, postharvest systems (e.g. stored grains) and natural areas against insect pests as well as in storage of grains and/or food.
[0707] The selected compounds are suitable for preventing Infestation, meaning to impede the growth of a pest population that it becomes so large it becomes harmful or unpleasant.
[0708] According to the invention, a insect pest is any insect that is undesirable or causes harm to people, property, or the environment. An organism may be a pest in one place but not in another; for example, termites in a house vs. those that recycle dead trees in a forest.
[0709] The selected compounds can also be present in the form of their useful salts. Useful salts which are suitable are mainly the salts of those cations, or the acid addition salts of those acids, whose cations, or anions, do not adversely affect the insecticidal action of the insecticidal active compounds identified via the methods according to the invention.
[0710] All of the compounds identified via the above methods can, if they contain chiral centers, be subject matter of the present invention in the form of pure enantiomers or diastereomers or in the form of their mixtures and as racemates.
[0711] The selected compounds can be chemically synthesized substances or substances produced by microorganisms and can be found, for example, in cell extracts of, for example, plants, animals or microorganisms. The reaction mixture can be a cell-free extract or comprise a cell or cell culture. Suitable methods are known to the SKilled worker and are described generally for example in Alberts, Molecular Biology the cell, 3rd Edition (1994), for example chapter 17.
[0712] Possible test compounds can be expression libraries such as, for example, cDNA expression libraries, peptides, proteins, nucleic acids, antibodies, small organic substances, hormones, PNAs or the like (Milner, Nature Medicin 1 (1995), 879-880; Hupp, Cell. 83 (1995), 237-245; Gibbs, Cell. 79 (1994), 193-198 and references cited therein).
[0713] Compounds with an insecticidal activity according to the invention are selected from the group consisting of TMB-8, Nifedipine, Nitrndipine, Tetrandrine, Verapamil, Methoxy Verapamil, YS035, Propafenone, Quinidine, Sulfonamides, Thiazolidinones, Indolones, Isoxazolylamides.
[0714] For use in a method according to the present invention, the compounds can be converted into the customary formulations, e.g. solutions, emulsions, suspensions, dusts, powders, pastes, granules and directly sprayable solutions. The use form depends on the particular purpose and application method. Formulations and application methods are chosen to ensure in each case a fine and uniform distribution of the compound of the formula I according to the present invention.
[0715] The formulations are prepared in a known manner (see e.g. for review U.S. Pat. No. 3,060,084, EP-A 707 445 (for liquid concentrates), Browning, "Agglomeration", Chemical Engineering, Dec. 4, 1967, 147-48, Perry's Chemical Engineer's Handbook, 4th Ed., McGraw-Hill, New York, 1963, pages 8-57 and et seq. WO 91/13546, U.S. Pat. No. 4,172,714, U.S. Pat. No. 4,144,050, U.S. Pat. No. 3,920,442, U.S. Pat. No. 5,180,587, U.S. Pat. No. 5,232,701, U.S. Pat. No. 5,208,030, GB 2,095,558, U.S. Pat. No. 3,299,566, Klingman, Weed Control as a Science, John Wiley and Sons, Inc., New York, 1961, Hance et al., Weed Control Handbook, 8th Ed., Blackwell Scientific Publications, Oxford, 1989 and Mollet, H., Grubemann, A., Formulation technology, Wiley VCH Verlag GmbH, Weinheim (Germany), 2001, 2. D. A. Knowles, Chemistry and Technology of Agrochemical Formulations, Kluwer Academic Publishers, Dordrecht, 1998 (ISBN 0-7514-0443-8), for example by extending the active compound with auxiliaries suitable for the formulation of agrochemicals, such as solvents and/or carriers, if desired emulsifiers, surfactants and dispersants, preservatives, antifoaming agents, anti-freezing agents, for seed treatment formulation also optionally colorants and/or binders and/or gelling agents.
[0716] Solvents/carriers, which are suitable, are e.g.:
[0717] solvents such as water, aromatic solvents (for example Solvesso products, xylene and the like), paraffins (for example mineral fractions), alcohols (for example methanol, butanol, pentanol, benzyl alcohol), ketones (for example cyclohexanone, gamma-butyrolactone), pyrrolidones (N-metyhl-pyrrolidone (NMP),N-octylpyrrolidone NOP), acetates (glycol diacetate), alkyl lactates, lactones such as g-butyrolactone, glycols, fatty acid dimethylamides, fatty acids and fatty acid esters, triglycerides, oils of vegetable or animal origin and modified oils such as alkylated plant oils. In principle, solvent mixtures may alk, be used.
[0718] carriers such as ground natural minerals and ground synthetic minerals, such as silica gels, finely divided silicic acid, silicates, talc, kaolin, attaclay, limestone, lime, chalk, bole, loess, clay, dolomite, diatomaceous earth, calcium sulfate and magnesium sulfate, magnesium oxide, ground synthetic materials, fertilizers, such as, for example, ammonium sulfate, ammonium phosphate, ammonium nitrate, ureas and products of vegetable origin, such as cereal meal, tree bark meal, wood meal and nutshell meal, cellulose powders and other solid carriers.
[0719] Suitable emulsifiers are nonionic and anionic emulsifiers (for example polyoxyethylene fatty alcohol ethers, alkylsulfonates and arylsulfonates).
[0720] Examples of dispersants are lignin-sulfite waste liquors and methylcellulose.
[0721] Suitable surfactants are alkali metal, alkaline earth metal and ammonium salts of lignosulfonic acid, naphthalenesulfonic acid, phenolsulfonic acid, dibutylnaphthalenesulfonic acid, alkylaryl-sulfonates, alkyl sulfates, alkylsulfonates, fatty alcohol sulfates, fatty acids and sulfated fatty alcohol glycol ethers, furthermore condensates of sulfonated naphthalene and naphthalene derivatives with formaldehyde, condensates of naphthalene or of naphthalenesulfonic acid with phenol and formaldehyde, polyoxyethylene octylphenyl ether, ethoxylated isooctylphenol, octylphenol, nonylphenol, alkylphenyl polyglycol ethers, tributylphenyl polyglycol ether, tristearylphenyl polyglycol ether, alkylaryl polyether alcohols, alcohol and fatty alcohol/ethylene oxide condensates, ethoxylated castor oil, polyoxyethylene alkyl ethers, ethoxylated polyoxypropylene, lauryl alcohol polyglycol ether acetal, sorbitol esters,
[0722] Also anti-freezing agents such as glycerin, ethylene glycol, propylene glycol and bactericides such as can be added to the formulation.
[0723] Suitable antifoaming agents are for example antifoaming agents based on silicon or magnesium stearate.
[0724] Suitable preservatives are for example dichlorophen and benzyl alcohol hemiformal Suitable thickeners are compounds which confer a pseudoplastic flow behavior to the formulation, i.e. high viscosity at rest and low viscosity in the agitated stage. Mention may be made, in this context, for example, of commercial thickeners based on polysaccharides, such as Xanthan Gum® (Kelzan® from Kelco), Rhodopol®23 (Rhone Poulenc) or Veegum® (from R. T. Vanderbilt), or organic phyllosilicates, such as Attaclay® (from Engelhardt). Antifoam agents suitable for the dispersions according to the invention are, for example, silicone emulsions (such as, for example, Silikon® SRE, Wacker or Rhodorsil® from Rhodia), long-chain alcohols, fatty acids, organofluorine compounds and mixtures thereof. Biocides can be added to stabilize the compositions according to the invention against attack by microorganisms. Suitable biocides are, for example, based on isothiazolones such as the compounds marketed under the trademarks Proxel® from Avecia (or Arch) or Acticide® RS from Thor Chemie and Kathon® MK from Rohm & Haas. Suitable antifreeze agents are organic polyols, for example ethylene glycol, propylene glycol or glycerol. These are usually employed in amounts of not more than 10% by weight, based on the total weight of the active compound composition. If appropriate, the active compound compositions according to the invention may comprise 1 to 5% by weight of buffer, based on the total amount of the formulation prepared, to regulate the pH, the amount and type of the buffer used depending on the chemical properties of the active compound or the active compounds. Examples of buffers are alkali metal salts of weak inorganic or organic acids, such as, for example, phosphoric acid, boronic acid, acetic acid, propionic acid, citric acid, fumaric acid, tartaric acid, oxalic acid and succinic acid.
[0725] Substances which are suitable for the preparation of directly sprayable solutions, emulsions, pastes or oil dispersions are mineral oil fractions of medium to high boiling point, such as kerosene or diesel oil, furthermore coal tar oils and oils of vegetable or animal origin, aliphatic, cyclic and aromatic hydrocarbons, for example toluene, xylene, paraffin, tetrahydronaphthalene, alkylated naphthalenes or their derivatives, methanol, ethanol, propanol, butanol, cyclohexanol, cyclohexanone, isophorone, strongly polar solvents, for example dimethyl sulfoxide, N-methylpyrrolidone and water.
[0726] Powders, materials for spreading and dusts can be prepared by mixing or concomitantly grinding the active substances with a solid carrier.
[0727] Granules, for example coated granules, impregnated granules and homogeneous granules, can be prepared by binding the active ingredients to solid carriers. Examples of solid carriers are mineral earths such as silica gels, silicates, talc, kaolin, attaclay, limestone, lime, chalk, bole, loess, clay, dolomite, diatomaceous earth, calcium sulfate, magnesium sulfate, magnesium oxide, ground synthetic materials, fertilizers, such as, for example, ammonium sulfate, ammonium phosphate, ammonium nitrate, ureas, and products of vegetable origin, such as cereal meal, tree bark meal, wood meal and nutshell meal, cellulose powders and other solid carriers.
[0728] In general, the formulations comprise from 0.01 to 95% by weight, preferably from 0.1 to 90% by weight, of the active ingredient. The active ingredients are employed in a purity of from 90% to 100%, preferably 95% to 100% (according to NMR spectrum).
[0729] For seed treatment purposes, respective formulations can be diluted 2-10 fold leading to concentrations in the ready to use preparations of 0.01 to 60% by weight active compound by weight, preferably 0.1 to 40% by weight.
[0730] The compound identified according to the method of the invention can be used as such, in the form of their formulations or the use forms prepared therefrom, for example in the form of directly sprayable solutions, powders, suspensions or dispersions, emulsions, oil dispersions, pastes, dustable products, materials for spreading, or granules, by means of spraying, atomizing, dusting, spreading or pouring. The use forms depend entirely on the intended purposes; they are intended to ensure in each case the finest possible distribution of the active compounds according to the invention.
[0731] The following are examples of formulations:
[0732] 1. Products for dilution with water. For seed treatment purposes, such products may be applied to the seed diluted or undiluted.
A) Water-soluble concentrates (SL, LS)
[0733] 10 parts by weight of the active compound is dissolved in 90 parts by weight of water or a water-soluble solvent. As an alternative, wetters or other auxiliaries are added. The active compound dissolves upon dilution with water, whereby a formulation with 10% (w/w) of active compound is obtained.
B) Dispersible concentrates (DC)
[0734] 20 parts by weight of the active compound is dissolved in 70 parts by weight of cyclohexanone with addition of 10 parts by weight of a dispersant, for example polyvinylpyrrolidone. Dilution with water gives a dispersion, whereby a formulation with 20% (w/w) of active compounds is obtained.
C) Emulsifiable concentrates (EC)
[0735] 15 parts by weight of the active compounds is dissolved in 7 parts by weight of xylene with addition of calcium dodecylbenzenesulfonate and castor oil ethoxylate (in each case 5 parts by weight). Dilution with water gives an emulsion, whereby a formulation with 15% (w/w) of active compounds is obtained.
D) Emulsions (EW, EO, ES)
[0736] 25 parts by weight of the active compound is dissolved in 35 parts by weight of xylene with addition of calcium dodecylbenzenesulfonate and castor oil ethoxylate (in each case 5 parts by weight). This mixture is introduced into 30 parts by weight of water by means of an emulsifier machine (e.g. Ultraturrax) and made into a homogeneous emulsion. Dilution with water gives an emulsion, whereby a formulation with 25% (w/w) of active compound is obtained.
E) Suspensions (SC, OD, FS)
[0737] In an agitated ball mill, 20 parts by weight of the active compound is comminuted with addition of 10 parts by weight of dispersants, wetters and 70 parts by weight of water or of an organic solvent to give a fine active compound suspension. Dilution with water gives a stable suspension of the active compound, whereby a formulation with 20% (w/w) of active compound is obtained.
F) Water-dispersible granules and water-soluble granules (WG, SG)
[0738] 50 parts by weight of the active compound is ground finely with addition of 50 parts by weight of dispersants and wetters and made as water-dispersible or water-soluble granules by means of technical appliances (for example extrusion, spray tower, fluidized bed). Dilution with water gives a stable dispersion or solution of the active compound, whereby a formulation with 50% (w/w) of active compound is obtained.
G) Water-dispersible powders and water-soluble powders (WP, SP, SS, WS)
[0739] 75 parts by weight of the active compound are ground in a rotor-stator mill with addition of 25 parts by weight of dispersants, wetters and silica gel. Dilution with water gives a stable dispersion or solution of the active compound, whereby a formulation with 75% (w/w) of active compound is obtained.
H) Gel-Formulation (GF)
[0740] In an agitated ball mill, 20 parts by weight of the active compound is comminuted with addition of 10 parts by weight of dispersants, 1 part by weight of a gelling agent wetters and 70 parts by weight of water or of an organic solvent to give a fine active compound suspension. Dilution with water gives a stable suspension of the active compound, whereby a formulation with 20% (w/w) of active compound is obtained.
[0741] 2. Products to be applied undiluted for foliar applications. For seed treatment purposes, such products may be applied to the seed diluted or undiluted.
I) Dustable powders (DP, DS)
[0742] 5 parts by weight of the active compound are ground finely and mixed intimately with 95 parts by weight of finely divided kaolin. This gives a dustable product having 5% (w/w) of active compound.
J) Granules (GR, FG, GG, MG)
[0743] 0.5 part by weight of the active compound is ground finely and associated with 95.5 parts by weight of carriers, whereby a formulation with 0.5% (w/w) of active compound is obtained. Current methods are extrusion, spray-drying or the fluidized bed. This gives granules to be applied undiluted for foliar use.
K) ULV solutions (UL)
[0744] 10 parts by weight of the active compound is dissolved in 90 parts by weight of an organic solvent, for example xylene. This gives a product having 10% (w/w) of active compound, which is applied undiluted for foliar use.
[0745] Aqueous use forms can be prepared from emulsion concentrates, pastes or wettable powders (sprayable powders, oil dispersions) by adding water. To prepare emulsions, pastes or oil dispersions, the substances, as such or dissolved in an oil or solvent, can be homogenized in water by means of a wetter, tackifier, dispersant or emulsifier. Alternatively, it is possible to prepare concentrates composed of active substance, wetter, tackifier, dispersant or emulsifier and, if appropriate, solvent or oil, and such concentrates are suitable for dilution with water.
[0746] The active ingredient concentrations in the ready-to-use products can be varied within relatively wide ranges. In general, they are from 0.0001 to 10%, preferably from 0.01 to 1%.
[0747] The active ingredients may also be used successfully in the ultra-low-volume process (ULV), it being possible to apply formulations comprising over 95% by weight of active ingredient, or even to apply the active ingredient without additives.
[0748] In the method of this invention compounds identified according to the method of the invention may be applied with other active ingredients, for example with other pesticides, insecticides, herbicides, fertilizers such as ammonium nitrate, urea, potash, and superphosphate, phytotoxicants and plant growth regulators, safeners and nematicides. These additional ingredients may be used sequentially or in combination with the above-described compositions, if appropriate also added only immediately prior to use (tank mix). For example, the plant(s) may be sprayed with a composition of this invention either before or after being treated with other active ingredients.
[0749] The following list M of pesticides together with which the compounds according to the invention can be used and with which potential synergistic effects might be produced, is intended to illustrate the possible combinations, but not to impose any limitation:
[0750] M.1. Organo(thio)phosphates: acephate, azamethiphos, azinphos-ethyl, azinphos-methyl, chlorethoxyfos, chlorfenvinphos, chlormephos, chlorpyrifos, chlorpyrifos-methyl, coumaphos, cyanophos, demeton-S-methyl, diazinon, dichlorvos/DDVP, dicrotophos, dimethoate, dimethylvinphos, disulfoton, EPN, ethion, ethoprophos, famphur, fenamiphos, fenitrothion, fenthion, flupyrazophos, fosthiazate, heptenophos, isoxathion, malathion, mecarbam, methamidophos, methidathion, mevinphos, monocrotophos, naled, omethoate, oxydemeton-methyl, parathion, parathion-methyl, phenthoate, phorate, phosalone, phosmet, phosphamidon, phoxim, pirimiphosmethyl, profenofos, propetamphos, prothiofos, pyraclofos, pyridaphenthion, quinalphos, sulfotep, tebupirimfos, temephos, terbufos, tetrachlorvinphos, thiometon, triazophos, trichlorfon, vamidothion;
[0751] M.2. Carbamates: aldicarb, alanycarb, bendiocarb, benfuracarb, butocarboxim, butoxycarboxim, carbaryl, carbofuran, carbosulfan, ethiofencarb, fenobucarb, formetanate, furathiocarb, isoprocarb, methiocarb, methomyl, metolcarb, oxamyl, pirimicarb, propoxur, thiodicarb, thiofanox, trimethacarb, XMC, xylylcarb, triazamate;
[0752] M.3. Pyrethroids: acrinathrin, allethrin, d-cis-trans allethrin, d-trans allethrin, bifenthrin, bioallethrin, bioallethrin S-cylclopentenyl, bioresmethrin, cycloprothrin, cyfluthrin, beta-, yfluthrin, cyhalothrin, lambda-cyhalothrin, gamma-cyhalothrin, cypermethrin, alpha-cypermethrin, beta-cypermethrin, theta-cypermethrin, zeta-cypermethrin, cyphenothrin, deltamethrin, empenthrin, esfenvalerate, etofenprox, fenpropathrin, fenvalerate, flucythrinate, flumethrin, tau-fluvalinate, halfenprox, imiprothrin, permethrin, phenothrin, prallethrin, resmethrin, RU 15525, silafluofen, tefluthrin, tetramethrin, tralomethrin, transfluthrin, ZXI 8901;
[0753] M.4. Juvenile hormone mimics: hydroprene, kinoprene, methoprene, fenoxycarb, pyriproxyfen;
[0754] M.5. Nicotinic receptor agonists/antagonists compounds: acetamiprid, bensultap, cartap hydrochloride, clothianidin, dinotefuran, imidacloprid, thiamethoxam, nitenpyram, nicotine, spinosad (allosteric agonist), thiacloprid, thiocyclam, thiosultap-sodium and AKD1022.
[0755] M.6. GABA gated chloride channel antagonist compounds: chlordane, endosulfan, gamma-HCH (lindane); acetoprole, ethiprole, fipronil, pyrafluprole, pyriprole, vaniliprole, the phenylpyrazole compound of formula M6.1
##STR00057##
[0756] M.7. Chloride channel activators: abamectin, emamectin benzoate, milbemectin, lepimectin;
[0757] M.8. METI I compounds: fenazaquin, fenpyroximate, pyrimidifen, pyridaben, tebufenpyrad, tolfenpyrad, flufenerim, rotenone;
[0758] M.9. METI II and III compounds: acequinocyl, fluacyprim, hydramethylnon;
[0759] M.10. Uncouplers of oxidative phosphorylation: chlorfenapyr, DNOC;
[0760] M.11. Inhibitors of oxidative phosphorylation: azocyclotin, cyhexatin, diafenthiuron, fenbutatin oxide, propargite, tetradifon;
[0761] M.12. Moulting disruptors: cyromazine, chromafenozide, halofenozide, methoxyfenozide, tebufenozide;
[0762] M.13. Synergists: piperonyl butoxide, tribufos;
[0763] M.14. Sodium channel blocker compounds: indoxacarb, metaflumizone;
[0764] M.15. Fumigants: methyl bromide, chloropicrin sulfuryl fluoride;
[0765] M.16. Selective feeding blockers: crylotie, pymetrozine, flonicamid;
[0766] M.17. Mite growth inhibitors: clofentezine, hexythiazox, etoxazole;
[0767] M.18. Chitin synthesis inhibitors: buprofezin, bistrifluron, chlorfluazuron, diflubenzuron, flucycloxuron, flufenoxuron, hexaflumuron, lufenuron, novaluron, noviflumuron, teflubenzuron, triflumuron;
[0768] M.19. Lipid biosynthesis inhibitors: spirodiclofen, spiromesifen, spirotetramat;
[0769] M.20. octapaminergic agonsits: amitraz;
[0770] M.21. ryanodine receptor modulators: flubendiamide;
[0771] M.22. Various: aluminium phosphide, amidoflumet, benclothiaz, benzoximate, bifenazate, borax, bromopropylate, cyanide, cyenopyrafen, cyflumetofen, chinomethionate, dicofol, fluoroacetate, phosphine, pyridalyl, pyrifluquinazon, sulfur, tartar emetic; pyrimidinyl alkynylether compounds M22.1 or thiadiazolyl alkynylether compounds M22.2:
##STR00058##
[0772] wherein RM-22 is methyl or ethyl and Het* is 3,3-dimethylpyrrolidin-1-yl, 3-methylpiperidin-1-yl, 3,5-dimethylpiperidin-1-yl, 3-trifluormethylpiperidin-1-yl, hexahydroazepin-1-yl, 2,6-dimethylhexahydroazepin-1-yl or 2,6-dimethylmorpholin-4-yl.
[0773] M.23. N--R'-2,2-dihalo-1-R''cyclo-propanecarboxamide-2-(2,6-dichloro-alpha, alpha, alphaquadrature-tri-fluoro-p-tolyl)hydrazone or N--R'-2,2-di(R''')propionamide-2-(2,6-dichloro-alpha, alpha, alpha-trifluoro-p-tolyl)-hydrazone, wherein R' is methyl or ethyl, halo is chloro or bromo, R'' is hydrogen or methyl and R''' is methyl or ethyl;
[0774] M.24. Anthranilamides: chloranthraniliprole, the compound of formula M24 1
##STR00059##
[0775] M.25. Malononitrile compounds: CF3(CH2)2C(CN)2CH2(CF2)3CF2H, CF3(CH2)2C(CN)2CH2(CF2)5CF2H, CF3(CH2)2C(CN)2(CH2)2C(CF3)2F, CF3(CH2)2C(CN)2(CH2)2(CF2)3CF.sub- .3, CF2H(CF2)3CH2C(CN)2CH2(CF2)3CF- 2H, CF3(CH2)2C(CN)2CH2(CF2)3CF.sub- .3, CF3(CF2)2CH2C(CN)2CH2(CF2)3CF.- sub.2H, CF3CF2CH2C(CN)2CH2(CF2)3CF2H, 2-(2,2,3,3,4,4,5,5-octafluoropentyl)-2-(3,3,4,4,4-pentafluorobutyl)-ma- lonodinitrile, and CF2HCF2CF2CF2CH2C(CN)2CH2CH2CF.su- b.2CF3;
[0776] M.26. Microbial disruptors: Bacillus thuringiensis subsp. Israelensi, Bacillus sphaericus, Bacillus thuringiensis subsp. Aizawai, Bacillus thuringiensis subsp. Kurstaki, Bacillus thuringiensis subsp. Tenebrionis;
[0777] The commercially available compounds of the group A may be found in The Pesticide Manual, 13th Edition, British Crop Protection Council (2003) among other publications.
[0778] Thioamides of formula M6.1 and their preparation have been described in WO 98/28279. Lepimectin is known from Agro Project, PJB Publications Ltd, November 2004. Benclothiaz and its preparation have been described in EP-A1 454621. Methidathion and Paraoxon and their preparation have been described in Farm Chemicals Handbook, Volume 88, Meister Publishing Company, 2001. Acetoprole and its preparation have been described in WO 98/28277. Metaflumizone and its preparation have been described in EP-A 1 462 456. Flupyrazofos has been described in Pesticide Science 54, 1988, p. 237-243 and in U.S. Pat. No. 4,822,779. Pyrafluprole and its preparation have been described in JP 2002193709 and in WO 01/00614. Pyriprole and its preparation have been described in WO 98/45274 and in U.S. Pat. No. 6,335,357. Amidoflumet and its preparation have been described in U.S. Pat. No. 6,221,890 and in JP 21010907. Flufenerim and its preparation have been described in WO 03/007717 and in WO 03/007718. AKD 1022 and its preparation have been described in U.S. Pat. No. 6,300,348. Chloranthraniliprole has been described in WO 01/70671, WO 03/015519 and WO 05/118552. Anthranilamide derivatives of formula M24.1 have been described in WO 01/70671, WO 04/067528 and WO 05/118552. Cyflumetofen and its preparation have been described in WO 04/080180. The aminoquinazolinone compound pyrifluquinazon has been described in EP A 109 7932. The alkynylether compounds M22.1 and M22.2 are described e.g. in JP 2006131529. The malononitrile compounds CF3(CH2)2C(CN)2CH2(CF2)3CF.s- ub.2H, CF3(CH2)2C(CN)2CH2(CF2)5CF2- H, CF3(CH2)2C(CN)2(CH2)2C(CF3)2F, CF3(CH2)2C(CN)2(CH2)2(CF2)3CF.sub- .3, CF2H(CF2)3CH2C(CN)2CH2(CF2)3CF- 2H, CF3(CH2)2C(CN)2CH2(CF2)3CF.sub- .3, CF3(CF2)2CH2C(CN)2CH2(CF2)3CF.- sub.2H, CF3CF2CH2C(CN)2CH2(CF2)3CF2H, 2-(2,2,3,3,4,4,5,5-octafluoropentyl)-2-(3,3,4,4,4-pentafluorobutyl)-ma- lonodinitrile, and CF2HCF2CF2CF2CH2C(CN)2CH2CH2CF.su- b.2CF3 have been described in WO 05/63694.
[0779] Fungicidal mixing partners are those selected from the group F consisting of
[0780] F.1 acylalanines such as benalaxyl, metalaxyl, ofurace, oxadixyl;
[0781] F.2 amine derivatives such as aldimorph, dodine, dodemorph, fenpropimorph, fenpropidin, guazatine, iminoctadine, spiroxamin, tridemorph;
[0782] F.3 anilinopyrimidines such as pyrimethanil, mepanipyrim or cyrodinyl;
[0783] F.4 antibiotics such as cycloheximid, griseofulvin, kasugamycin, natamycin, polyoxin or streptomycin;
[0784] F.5 azoles such as bitertanol, bromoconazole, cyproconazole, difenoconazole, dinitroconazole, epoxiconazole, fenbuconazole, fluquiconazole, flusilazole, hexaconazole, imazalil, metconazole, myclobutanil, penconazole, propiconazole, prochloraz, prothioconazole, tebuconazole, triadimefon, triadimenol, triflumizol, triticonazole, flutriafol;
[0785] F.6 dicarboximides such as iprodion, myclozolin, procymidon, vinclozolin;
[0786] F.7 dithiocarbamates such as ferbam, nabam, maneb, mancozeb, metam, metiram, propineb, polycarbamate, thiram, ziram, zineb;
[0787] F.8 heterocyclic compounds such as anilazine, benomyl, boscalid, carbendazim, carboxin, oxycarboxin, cyazofamid, dazomet, dithianon, famoxadon, fenamidon, fenarimol, fuberidazole, flutolanil, furametpyr, isoprothiolane, mepronil, nuarimol, probenazole, proquinazid, pyrifenox, pyroquilon, quinoxyfen, silthiofam, thiabendazole, thifluzamid, thiophanate-methyl, tiadinil, tricyclazole, triforine;
[0788] F.9 copper fungicides such as Bordeaux mixture, copper acetate, copper oxychloride, basic copper sulfate;
[0789] F.10 nitrophenyl derivatives such as binapacryl, dinocap, dinobuton, nitrophthalisopropyl;
[0790] F.11 phenylpyrroles such as fenpiclonil or fludioxonil;
[0791] F.12 strobilurins such as azoxystrobin, dimoxystrobin, fluoxastrobin, kresoxim-methyl, metominostrobin, orysastrobin, picoxystrobin or trifloxystrobin;
[0792] F.13 sulfenic acid derivatives such as captafol, captan, dichlofluanid, folpet, tolylfluanid;
[0793] F.14 cinnemamides and analogs such as dimethomorph, flumetover or flumorph;
[0794] F.15 sulfur, and other fungicides such as acibenzolar-S-methyl, benthiavalicarb, carpropamid, chlorothalonil, cyflufenamid, cymoxanil, dazomet, diclomezin, diclocymet, diethofencarb, edifenphos, ethaboxam, fenhexamid, fentin-acetate, fenoxanil, ferimzone, fluazinam, fosetyl, fosetyl-aluminum, iprovalicarb, hexachlorobenzene, metrafenon, pencycuron, propamocarb, phthalide, toloclofos-methyl, quintozene, zoxamid.
Applications
[0795] The animal pest, i.e. the insects, the plant, soil or water in which the plant is growing can be contacted with the present compound(s) identified according to the method of the invention or composition(s) containing them by any application method known in the art. As such, "contacting" includes both direct contact (applying the compounds/compositions directly on the animal pest or plant--typically to the foliage, stem or roots of the plant) and indirect contact (applying the compounds/compositions to the locus of the animal pest or plant).
[0796] The compounds of formula identified according to the method of the invention or the insecticidal compositions comprising them may be used to protect growing plants and crops from attack or infestation by animal pests, especially insects, acaridae or arachnids by contacting the plant/crop with a insecticidally effective amount of compounds identified according to the method of the invention. The term "crop" refers both to growing and harvested crops.
[0797] Moreover, animal pests may be controlled by contacting the target pest, its food supply, habitat, breeding ground or its locus with a insecticidally effective amount of compounds identified according to the method of the invention. As such, the application may be carried out before or after the infection of the locus, growing crops, or harvested crops by the pest.
[0798] The compounds of the invention can also be applied preventively to places at which occurrence of the pests is expected.
[0799] The compounds identified according to the method of the invention may be also used to protect growing plants from attack or infestation by pests by contacting the plant with a insecticidally effective amount of compounds identified according to the method of the invention. As such, "contacting" includes both direct contact (applying the compounds/compositions directly on the pest and/or plant--typically to the foliage, stem or roots of the plant) and indirect contact (applying the compounds/compositions to the locus of the pest and/or plant).
[0800] "Locus" means a habitat, breeding ground, plant, seed, soil, area, material or environment in which a pest or parasite is growing or may grow.
[0801] In general, "insecticidally effective amount" means the amount of active ingredient needed to achieve an observable effect on growth, death, retardation, prevention, and removal, destruction, or otherwise diminishing the occurrence and activity of the target organism. The insecticidally effective amount can vary for the various compounds/compositions used in the invention. A insecticidally effective amount of the compositions will also vary according to the prevailing conditions such as desired insecticidal effect and duration, weather, target species, locus, mode of application, and the like.
[0802] In the case of soil treatment or of application to the pests dwelling place or nest, the quantity of active ingredient ranges from 0.0001 to 500 g per 100 m2, preferably from 0.001 to 20 g per 100 m2.
[0803] Customary application rates in the protection of materials are, for example, from 0.01 g to 1000 g of active compound per m2 treatedmaterial, desirably from 0.1 g to 50 g per m2.
[0804] Insecticidal compositions for use in the impregnation of materials typically contain from 0.001 to 95 weight %, preferably from 0.1 to 45 weight %, and more preferably from 1 to 25 weight % of at least one repellent and/or insecticide.
[0805] For use in treating crop plants, the rate of application of the active ingredients of this invention may be in the range of 0.1 g to 4000 g per hectare, desirably from 25 g to 600 g per hectare, more desirably from 50 g to 500 g per hectare.
[0806] The compounds of formula I are effective through both contact (via soil, glass, wall, bed net, carpet, plant parts or animal parts), and ingestion (bait, or plant part).
[0807] The compounds of the invention may also be applied against non-crop insect pests, such as ants, termites, wasps, flies, mosquitoes, crickets, or cockroaches. For use against said non-crop pests, compounds of formula I are preferably used in a bait composition.
[0808] The bait can be a liquid, a solid or a semisolid preparation (e.g. a gel). Solid baits can be formed into various shapes and forms suitable to the respective application e.g. granules, blocks, sticks, disks. Liquid baits can be filled into various devices to ensure proper application, e.g. open containers, spray devices, droplet sources, or evaporation sources. Gels can be based on aqueous or oily matrices and can be formulated to particular necessities in terms of stickyness, moisture retention or aging characteristics.
[0809] The bait employed in the composition is a product, which is sufficiently attractive to incite insects such as ants, termites, wasps, flies, mosquitoes, crickets etc. or cockroaches to eat it. The attractiveness can be manipulated by using feeding stimulants or sex pheromones. Food stimulants are chosen, for example, but not exclusively, from animal and/or plant proteins (meat-, fish- or blood meal, insect parts, egg yolk), from fats and oils of animal and/or plant origin, or mono-, oligo- or polyorganosaccharides, especially from sucrose, lactose, fructose, dextrose, glucose, starch, pectin or even molasses or honey. Fresh or decaying parts of fruits, crops, plants, animals, insects or specific parts thereof can also serve as a feeding stimulant. Sex pheromones are known to be more insect specific. Specific pheromones are described in the literature and are known to those skilled in the art.
[0810] For use in bait compositions, the typical content of active ingredient is from 0.001 weight % to 15 weight %, desirably from 0.001 weight % to 5% weight % of active compound.
[0811] Formulations of compounds identified according to the method of the invention as aerosols (e.g in spray cans), oil sprays or pump sprays are highly suitable for the non-professional user for controlling pests such as flies, fleas, ticks, mosquitoes or cockroaches. Aerosol recipes are preferably composed of the active compound, solvents such as lower alcohols (e.g. methanol, ethanol, propanol, butanol), ketones (e.g. acetone, methyl ethyl ketone), paraffin hydrocarbons (e.g. kerosenes) having boiling ranges of approximately 50 to 250° C., dimethylformamide, N-methylpyrrolidone, dimethyl sulfoxide, aromatic hydrocarbons such as toluene, xylene, water, furthermore auxiliaries such as emulsifiers such as sorbitol monooleate, oleyl ethoxylate having 3-7 mol of ethylene oxide, fatty alcohol ethoxylate, perfume oils such as ethereal oils, esters of medium fatty acids with lower alcohols, aromatic carbonyl compounds, if appropriate stabilizers such as sodium benzoate, amphoteric surfactants, lower epoxides, triethyl orthoformate and, if required, propellants such as propane, butane, nitrogen, compressed air, dimethyl ether, carbon dioxide, nitrous oxide, or mixtures of these gases.
[0812] The oil spray formulations differ from the aerosol recipes in that no propellants are used.
[0813] For use in spray compositions, the content of active ingredient is from 0.001 to 80 weights %, preferably from 0.01 to 50 weight % and most preferably from 0.01 to 15 weight %.
[0814] The compounds identified according to the method of the invention and its respective compositions can also be used in mosquito and fumigating coils, smoke cartridges, vaporizer plates or long-term vaporizers and also in moth papers, moth pads or other heat-independent vaporizer systems.
[0815] Methods to control infectious diseases transmitted by insects (e.g. malaria, dengue and yellow fever, lymphatic filariasis, and leishmaniasis) with compounds of formula I and its respective compositions also comprise treating surfaces of huts and houses, air spraying and impregnation of curtains, tents, clothing items, bed nets, tsetse-fly trap or the like. Insecticidal compositions for application to fibers, fabric, knitgoods, nonwovens, netting material or foils and tarpaulins preferably comprise a mixture including the insecticide, optionally a repellent and at least one binder. Suitable repellents for example are N,N-Diethyl-meta-toluamide (DEET), diethylphenylacetamide (DEPA), 1-(3-cyclohexan-1-yl-carbonyl)-2-methylpiperine, (2-hydroxymethylcyclohexyl) acetic acid lactone, 2-ethyl-1,3-hexandiol, indalone, Methyl-neodecanamide (MNDA), a pyrethroid not used for insect control such as {(+/-)-3-allyl-2-methyl-4-oxocyclopent-2-(+)-enyl-(+)-trans-chrysantemate (Esbiothrin), a repellent derived from or identical with plant extracts like limonene, eugenol, (+)-Eucamalol (1), (-)-1-epi-eucamalol or crude plant extracts from plants like Eucalyptus maculata, Vitex rotundifolia, Cymbopogan martinii, Cymbopogan citratus (lemon grass), Cymopogan nartdus (citronella). Suitable binders are selected for example from polymers and copolymers of vinyl esters of aliphatic acids (such as such as vinyl acetate and vinyl versatate), acrylic and methacrylic esters of alcohols, such as butyl acrylate, 2-ethylhexylacrylate, and methyl acrylate, mono- and di-ethylenically unsaturated hydrocarbons, such as styrene, and aliphatic diens, such as butadiene.
[0816] The impregnation of curtains and bednets is done in general by dipping the textile material into emulsions or dispersions of the insecticide or spraying them onto the nets.
[0817] The compounds identified according to the method of the invention and its compositions can be used for protecting wooden materials such as trees, board fences, sleepers, etc. and buildings such as houses, outhouses, factories, but also construction materials, furniture, leathers, fibers, vinyl articles, electric wires and cables etc. from ants and/or termites, and for controlling ants and termites from doing harm to crops or human being (e.g. when the pests invade into houses and public facilities). The compounds identified according to the method of the invention are applied not only to the surrounding soil surface or into the under-floor soil in order to protect wooden materials but it can also be applied to lumbered articles such as surfaces of the under-floor concrete, alcove posts, beams, plywoods, furniture, etc., wooden articles such as particle boards, half boards, etc. and vinyl articles such as coated electric wires, vinyl sheets, heat insulating material such as styrene foams, etc. In case of application against ants doing harm to crops or human beings, the ant controller of the present invention is applied to the crops or the surrounding soil, or is directly applied to the nest of ants or the like.
Seed Treatment
[0818] The compounds identified according to the method of the invention are also suitable for the treatment of seeds in order to protect the seed from insect pest, in particular from soil-living insect pests and the resulting plant's roots and shoots against soil pests and foliar insects.
[0819] The compounds identified according to the method of the invention are particularly useful for the protection of the seed from soil pests and the resulting plant's roots and shoots against soil pests and foliar insects. The protection of the resulting plant's roots and shoots is preferred. More preferred is the protection of resulting plant's shoots from piercing and sucking insects, wherein the protection from aphids is most preferred, specially Green Peach Aphid (Myzus persica) and/or Red Flower Beetle (Tribolium castaneum)
[0820] The present invention therefore comprises a method for the protection of seeds from insects, in particular from soil insects and of the seedlings' roots and shoots from insects, in particular from soil and foliar insects, said method comprising contacting the seeds before sowing and/or after pregermination with a compound identified according to the method of the invention. Particularly preferred is a method, wherein the plant's roots and shoots are protected, more preferably a method, wherein the plants shoots are protected form piercing and sucking insects, most preferably a method, wherein the plants shoots are protected from aphids.
[0821] The term seed embraces seeds and plant propagules of all kinds including but not limited to true seeds, seed pieces, suckers, corms, bulbs, fruit, tubers, grains, cuttings, cut shoots and the like and means in a preferred embodiment true seeds.
[0822] The term seed treatment comprises all suitable seed treatment techniques known in the art, such as seed dressing, seed coating, seed dusting, seed soaking and seed pelleting.
[0823] The present invention also comprises seeds coated with or containing the active compound.
[0824] The term "coated with and/or containing" generally signifies that the active ingredient is for the most part on the surface of the propagation product at the time of application, although a greater or lesser part of the ingredient may penetrate into the propagation product, depending on the method of application. When the said propagation product is (re)planted, it may absorb the active ingredient.
[0825] Suitable seed is seed of cereals, root crops, oil crops, vegetables, spices, ornamentals, for example seed of durum and other wheat, barley, oats, rye, maize (fodder maize and sugar maize sweet and field corn), soybeans, oil crops, crucifers, cotton, sunflowers, bananas, rice, oilseed rape, turnip rape, sugarbeet, fodder beet, eggplants, potatoes, grass, lawn, turf, fodder grass, tomatoes, leeks, pumpkin/squash, cabbage, iceberg lettuce, pepper, cucumbers, melons, Brassica species, melons, beans, peas, garlic, onions, carrots, tuberous plants such as potatoes, sugar cane, tobacco, grapes, petunias, geranium/pelargoniums, pansies and impatiens.
[0826] In addition, the active compound may also be used for the treatment seeds from plants, which tolerate the action of herbicides or fungicides or insecticides owing to breeding, including genetis engineering methods.
[0827] For example, the active compound can be employed in treatment of seeds from plants, which are resistant to herbicides from the group consisting of the sulfonylureas, imidazolinones, glufosinate-ammonium or glyphosate-isopropylammonium and analogous active substances (see for example, EP-A-0242236, EP-A-242246) (WO 92/00377) (EP-A-0257993, U.S. Pat. No. 5,013,659) or in transgenic crop plants, for example cotton, with the capability of producing Bacillus thuringiensis toxins (Bt toxins) which make the plants resistant to certain pests (EP-A-0142924, EP-A-0193259),
[0828] Furthermore, the active compound can be used also for the treatment of seeds from plants, which have modified characteristics in comparison with existing plants consist, which can be generated for example by traditional breeding methods and/or the generation of mutants, or by recombinant procedures). For example, a number of cases have been described of recombinant modifications of crop plants for the purpose of modifying the starch synthesized in the plants (e.g. WO 92/11376, WO 92/14827, WO 91/19806) or of transgenic crop plants having a modified fatty acid composition (WO 91/13972).
[0829] The seed treatment application of the active compound is carried out by spraying or by dusting the seeds before sowing of the plants and before emergence of the plants.
[0830] Compositions which are especially useful for seed treatment are e.g.:
[0831] A Soluble concentrates (SL, LS)
[0832] D Emulsions (EW, EO, ES)
[0833] E Suspensions (SC, OD, FS)
[0834] F Water-dispersible granules and water-soluble granules (WG, SG)
[0835] G Water-dispersible powders and water-soluble powders (WP, SP, WS)
[0836] H Gel-Formulations (GF)
[0837] I Dustable powders (DP, DS)
[0838] Conventional seed treatment formulations include for example flowable concentrates FS, solutions LS, powders for dry treatment DS, water dispersible powders for slurry treatment WS, water-soluble powders SS and emulsion ES and EC and gel formulation GF. These formulations can be applied to the seed diluted or undiluted. Application to the seeds is carried out before sowing, either directly on the seeds or after having pregerminated the latter
[0839] In a preferred embodiment a FS formulation is used for seed treatment. Typically, a FS formulation may comprise 1-800 g/l of active ingredient, 1-200 g/l Surfactant, 0 to 200 g/l antifreezing agent, 0 to 400 g/l of binder, 0 to 200 g/l of a pigment and up to 1 liter of a solvent, preferably water.
[0840] Especially preferred FS formulations of compounds identified according to the method of the invention for seed treatment usually comprise from 0.1 to 80% by weight (1 to 800 g/l) of the active ingredient, from 0.1 to 20% by weight (1 to 200 g/l) of at least one surfactant, e.g. 0.05 to 5% by weight of a wetter and from 0.5 to 15% by weight of a dispersing agent, up to 20% by weight, e.g. from 5 to 20% of an anti-freeze agent, from 0 to 15% by weight, e.g. 1 to 15% by weight of a pigment and/or a dye, from 0 to 40% by weight, e.g. 1 to 40% by weight of a binder (sticker/adhesion agent), optionally up to 5% by weight, e.g. from 0.1 to 5% by weight of a thickener, optionally from 0.1 to 2% of an anti-foam agent, and optionally a preservative such as a biocide, antioxidant or the like, e.g. in an amount from 0.01 to 1% by weight and a filler/vehicle up to 100% by weight.
[0841] Seed Treatment formulations may additionally also comprise binders and optionally colorants.
[0842] Binders can be added to improve the adhesion of the active materials on the seeds after treatment. Suitable binders are homo- and copolymers from alkylene oxides like ethylene oxide or propylene oxide, polyvinylacetate, polyvinylalcohols, polyvinylpyrrolidones, and copolymers thereof, ethylene-vinyl acetate copolymers, acrylic homo- and copolymers, polyethyleneamines, polyethyleneamides and polyethyleneimines, polysaccharides like celluloses, tylose and starch, polyolefin homo- and copolymers like olefin/maleic anhydride copolymers, polyurethanes, polyesters, polystyrene homo and copolymers
[0843] Optionally, also colorants can be included in the formulation. Suitable colorants or dyes for seed treatment formulations are Rhodamin B, C.I. Pigment Red 112, C.I. Solvent Red 1, pigment blue 15:4, pigment blue 15:3, pigment blue 15:2, pigment blue 15:1, pigment blue 80, pigment yellow 1, pigment yellow 13, pigment red 112, pigment red 48:2, pigment red 48:1, pigment red 57:1, pigment red 53:1, pigment orange 43, pigment orange 34, pigment orange 5, pigment green 36, pigment green 7, pigment white 6, pigment brown 25, basic violet 10, basic violet 49, acid red 51, acid red 52, acid red 14, acid blue 9, acid yellow 23, basic red 10, basic red 108.
[0844] Examples of a gelling agent is carrageen (Satiagel®)
[0845] In the treatment of seed, the application rates of the compounds I are generally from 0.1 g to 10 kg per 100 kg of seed, preferably from 1 g to 5 kg per 100 kg of seed, more preferably from 1 g to 1000 g per 100 kg of seed and in particular from 1 g to 200 g per 100 kg of seed.
[0846] The invention therefore also relates to seed comprising a compound identified according to the method of the invention, or an agriculturally useful salt of I, as defined herein. The amount of the compound identified according to the method of the invention or the agriculturally useful salt thereof will in general vary from 0.1 g to 10 kg per 100 kg of seed, preferably from 1 g to 5 kg per 100 kg of seed, in particular from 1 g to 1000 g per 100 kg of seed. For specific crops such as lettuce the rate can be higher.
[0847] In one embodiment the invention relates to subject mater summarized as follows:
[0848] item a1. A method for identifying a insecticidally active compound that reduces the activity of an insect voltage-gated potassium channel Sha1 (Shaker cognate 1 or Shaker-like) and/or its accessory protein KChIP (potassium channel-interacting protein) respectively which method comprises:
[0849] a) assembling in a membrane a polypeptide with the activity of an insect voltage-gated potassium channel Sha1 (Shaker cognate 1 or Shaker-like) and/or its accessory protein KChIP (potassium channel-interacting protein) respectively which is originally not present said membrane,
[0850] b) applying at one side of the membrane the compound suspected of having the ability to inhibit the activity of said polypeptide which is originally not present said membrane,
[0851] c) determining the activity of said polypeptide and
[0852] d) identifying a compound applied in (b) that reduces the activity of said polypeptide.
[0853] item a2. A method according to item a1 whereby a gene coding for a polypeptide with the activity of an insect voltage-gated potassium channel Sha1 (Shaker cognate 1 or Shaker-like) and/or its accessory protein KChIP (potassium channel-interacting protein) respectively is expressed in the membrane of a host cell.
[0854] item a3. A method of any one of the items 1 or 2 wherein the membrane comprises at least one polypeptide encoded by a nucleic acid molecule selected from the group consisting of
[0855] a) a nucleic acid molecule encoding the polypeptide shown in SEQ ID NO: 1, 5, 9, 13, 17, 21, 25 and/or 29;
[0856] b) a nucleic acid molecule shown in SEQ ID NO: 1, 5, 9, 13, 17, 21, 25 and/or 29;
[0857] c) a nucleic acid molecule, which, as a result of the degeneracy of the genetic code, can be derived from a polypeptide sequence according to SEQ ID NO: 2, 6, 10, 14, 18, 22, 26 and/or 30;
[0858] d) a nucleic acid molecule having at least 50% identity with the nucleic acid molecule sequence of a polynucleotide comprising the nucleic acid molecule shown in SEQ ID NO: 1, 5, 9, 13, 17, 21, 25 and/or 29;
[0859] e) a nucleic acid molecule encoding a polypeptide having at least 50% identity with the amino acid sequence of the polypeptide encoded by the nucleic acid molecule of (a) to (c) and having the activity of a voltage-gated potassium channel Sha1 (Shaker cognate 1 or Shaker-like) and/or its accessory protein KChIP (potassium channel-interacting protein) respectively;
[0860] f) nucleic acid molecule which hybridizes with a nucleic acid molecule of (a) to (c) under stringent hybridization conditions;
[0861] g) a nucleic acid molecule encoding a polypeptide which can be isolated with the aid of monoclonal or polyclonal antibodies made against a polypeptide encoded by one of the nucleic acid molecules of (a) to (e) and having the activity of a voltage-gated potassium channel Sha1 (Shaker cognate 1 or Shaker-like) and/or its accessory protein KChIP (potassium channel-interacting protein) respectively;
[0862] h) a nucleic acid molecule encoding a polypeptide comprising the consensus sequence as shown in SEQ ID NO: 33 and/or 34 respectively or one or more motifs selected from the group consisting of SEQ ID NO: 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54 and/or 55, and/or 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70 and/or 71 respectively;
[0863] i) nucleic acid molecule which comprises a polynucleotide, which is obtained by amplifying a cDNA library or a genomic library using the primers in SEQ ID NO: 3, 4; 7, 8; 11, 12; 15, 16, 19, 20; 23, 24; 27, 28 and/or 31, 32 respectively;
[0864] and
[0865] j) a nucleic acid molecule which is obtainable by screening a suitable nucleic acid library under stringent hybridization conditions with a probe comprising a complementary sequence of a nucleic acid molecule of (a) or (b) or with a fragment thereof, having at least 15 nt, preferably 20 nt, 30 nt, 50 nt, 100 nt, 200 nt or 500 nt of a nucleic acid molecule complementary to a nucleic acid molecule sequence characterized in (a) to (e) and encoding a polypeptide and having the activity of a voltage-gated potassium channel Sha1 (Shaker cognate 1 or Shaker-like) and/or its accessory protein KChIP (potassium channel-interacting protein) respectively.
[0866] item a4. A method of item a1 whereby the activity of said polypeptide with the activity of insect voltage-gated potassium channel Sha1 (Shaker cognate 1 or Shaker-like) and/or its accessory protein KChIP (potassium channel-interacting protein) respectively is determinated electrophysiologically.
[0867] item a5. A method of item a4 whereby the activity of said polypeptide with the activity of insect voltage-gated potassium channel Sha1 (Shaker cognate 1 or Shaker-like) and/or its accessory protein KChIP (potassium channel-interacting protein) respectively is determinated by patch clamp or in a HTS assay.
[0868] item a6. A method of item a2 whereby a gene coding for a polypeptide with the activity of an insect voltage-gated potassium channel Sha1 (Shaker cognate 1 or Shaker-like) and/or its accessory protein KChIP (potassium channel-interacting protein) respectively is expressed in a mammalian cell.
[0869] item a7. A method of item a2 whereby a gene coding for a polypeptide with the activity of an insect voltage-gated potassium channel Sha1 (Shaker cognate 1 or Shaker-like) and/or its accessory protein KChIP (potassium channel-interacting protein) respectively is expressed in a mammalian cell selected from the group consisting of: CHO-cells and HEK293.
[0870] item a8. A method of item a1 which comprises:
[0871] a) e) applying to an insect, to a population of insects or to the location wherein said insect is to be controlled an insect-controlling amount a compound identified according to item aa1 d) and
[0872] b) f) determining of the growth or the viability of said treated insect or population of insects or of insects or population of insects on said location and untreated insect, population of insects or location and
[0873] c) g) selecting of compounds, which reduces the growth or the viability of said treated insect or population of insects or of insects or population of insects on said location following application of the compound of step e).
[0874] item a9. An assay system comprising a host organism, tissue, cells or a cell digest thereof or a membrane, which has embedded, assembled, intercalated or incorporated a nucleic acid molecule selected from the group consisting of the nucleic acid molecule as depicted in item a3 a) to 3 j) and, based on the expression of this nucleic acid molecule, a polypeptide having the biological activity of a insect voltage-gated potassium channel Sha1 (Shaker cognate 1 or Shaker-like) and/or its accessory protein KChIP (potassium channel-interacting protein) respectively, for identifying insecticidally active compound that reduces the activity of an insect voltage-gated potassium channel Sha1 (Shaker cognate 1 or Shaker-like) and/or its accessory protein KChIP (potassium channel-interacting protein) respectively.
[0875] item a10. The assay system of item a9 whereby the host organism is a stably transfected mammalian cell which expresses a nucleic acid molecule selected from the group consisting of the nucleic acid molecule as depicted in item a3 a) to 3 j).
[0876] item a11. The assay system of item a10 whereby the mammalian cell is selected from the group consisting of: CHO-cells, HEK293, COS, HeLa, NIH3T3, BAK21, Jurkat, CV-1, HepC-2-, Xenopus oocyte, Sf9, S2, Sf21, Hi5, Pc12 and U2OS.
[0877] item a12. A method for killing or inhibiting the growth or viability of an insect, comprising applying to the insect a compound identified according to the method of item a1.
[0878] item a13. A nucleic acid molecule selected from the group consisting of:
[0879] a) a nucleic acid molecule encoding the polypeptide shown in 2, 6, 10, 14, 18, 22, 26 and/or 30;
[0880] b) a nucleic acid molecule shown in SEQ ID NO: 1, 5, 9, 13, 17, 21, 25 and/or 29;
[0881] c) a nucleic acid molecule, which, as a result of the degeneracy of the genetic code, can be derived from a polypeptide sequence according to SEQ ID NO: 2, 6, 10, 14, 18, 22, 26 and/or 30;
[0882] d) a nucleic acid molecule having at least 50% identity with the nucleic acid molecule sequence of a polynucleotide comprising the nucleic acid molecule shown in SEQ ID NO: 1, 5, 9, 13, 17, 21, 25 and/or 29;
[0883] e) a nucleic acid molecule encoding a polypeptide having at least 50% identity with the amino acid sequence of the polypeptide encoded by the nucleic acid molecule of (a) to (c) and having the activity of a voltage-gated potassium channel Sha1 (Shaker cognate 1 or Shaker-like) and/or its accessory protein KChIP (potassium channel-interacting protein) respectively;
[0884] f) nucleic acid molecule which hybridizes with a nucleic acid molecule of (a) to (c) under stringent hybridization conditions;
[0885] g) a nucleic acid molecule encoding a polypeptide which can be isolated with the aid of monoclonal or polyclonal antibodies made against a polypeptide encoded by one of the nucleic acid molecules of (a) to (e) and having the activity of a voltage-gated potassium channel Sha1 (Shaker cognate 1 or Shaker-like) and/or its accessory protein KChIP (potassium channel-interacting protein) respectively;
[0886] h) a nucleic acid molecule encoding a polypeptide comprising the consensus sequence as shown in SEQ ID NO: 33 and/or 34 respectively or one or more motifs selected from the group consisting of SEQ ID NO: 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54 and/or 55, and/or 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70 and/or 71 respectively;
[0887] i) nucleic acid molecule which comprises a polynucleotide, which is obtained by amplifying a cDNA library or a genomic library using the primers in SEQ ID NO: 3, 4; 7, 8; 11, 12; 15, 16; 19, 20; 23, 24; 27, 28 and/or 31, 32 respectively;
[0888] and
[0889] j) a nucleic acid molecule which is obtainable by screening a suitable nucleic acid library under stringent hybridization conditions with a probe comprising a complementary sequence of a nucleic acid molecule of (a) or (b) or with a fragment thereof, having at least 15 nt, preferably 20 nt, 30 nt, 50 nt, 100 nt, 200 nt or 500 nt of a nucleic acid molecule complementary to a nucleic acid molecule sequence characterized in (a) to (e) and encoding a polypeptide and having the activity of a potassium channel Sha1 (Shaker cognate 1 or Shaker-like) and/or its accessory protein KChIP (potassium channel-interacting protein) respectively.
[0890] item a14. A nucleic acid construct comprising a nucleic acid molecule according to item a13.
[0891] item a15. A vector comprising a nucleic acid construct according to item a14 or a nucleic acid molecule according to item a13.
[0892] item a16. A transgenic cell comprising a vector according to item a15, a nucleic acid construct according to item a14 or a nucleic acid molecule according to item a13.
[0893] item a17. A polypeptide encoded by a nucleic acid molecule according to item a13.
[0894] item a18. Use of a polypeptide with the activity of an insect voltage-gated potassium channel Sha1 (Shaker cognate 1 or Shaker-like) and/or its accessory protein KChIP (potassium channel-interacting protein) respectively as insecticidal target.
[0895] item a19. Use of a polypeptide encoded by a nucleic acid molecule selected from the group consisting of the nucleic acid molecule as depicted in item a3 a) to 3 j) as insecticidal target.
[0896] item a20. A method for controlling a insecticidal pest comprising the application of a composition comprising as insecticidal active ingredient at least one compound as depicted in table I or a derivate thereof.
[0897] Item b1. A method for identifying a insecticidally active compound that reduces the activity of an insect Shaker channel and/or a Hyperkinetic beta subunit, preferably H-kv beta subunit A or C subtype respectively which method comprises:
[0898] a) assembling in a membrane a polypeptide with the activity of an insect Shaker channel and/or a Hyperkinetic beta subunit, preferably H-kv beta subunit A or C subtype respectively which is originally not present said membrane,
[0899] b) applying at one side of the membrane the compound suspected of having the ability to inhibit the activity of said polypeptide which is originally not present said membrane,
[0900] c) determining the activity of said polypeptide and
[0901] d) identifying a compound applied in (b) that reduces the activity of said polypeptide.
[0902] Item b2. A method according to item bl whereby a gene coding for a polypeptide with the activity of an insect Shaker channel and/or a Hyperkinetic beta subunit, preferably H-kv beta subunit A or C subtype respectively is expressed in the membrane of a host cell.
[0903] Item b3. A method of any one of the items bl or b2 wherein the membrane comprises at least one polypeptide encoded by a nucleic acid molecule selected from the group consisting of:
[0904] a) a nucleic acid molecule encoding a polypeptide comprising the polypeptide shown in SEQ ID NO: 73, 75, 77, 79, 81, 83, 85 and/or 87;
[0905] b) a nucleic acid molecule comprising a nucleic acid molecule shown in SEQ ID NO: 72, 74, 76, 78, 80, 82, 84 and/or 86;
[0906] c) a nucleic acid molecule, which, as a result of the degeneracy of the genetic code, can be derived from a polypeptide comprising a polypeptide sequence according to SEQ ID NO: 73, 75, 77, 79, 81, 83, 85 and/or 87;
[0907] d) a nucleic acid molecule having at least 50% identity with the nucleic acid molecule sequence of a polynucleotide comprising the nucleic acid molecule shown in SEQ ID NO: 72, 74, 76, 78, 80, 82, 84 and/or 86;
[0908] e) a nucleic acid molecule encoding a polypeptide having at least 50% identity with the amino acid sequence of the polypeptide encoded by the nucleic acid molecule of (a) to (c) and having the activity of a Shaker channel and/or a Hyperkinetic beta subunit, preferably H-kv beta subunit A or C subtype respectively;
[0909] f) nucleic acid molecule which hybridizes with a nucleic acid molecule of (a) to (c) under stringent hybridization conditions;
[0910] g) a nucleic acid molecule encoding a polypeptide which can be isolated with the aid of monoclonal or polyclonal antibodies made against a polypeptide encoded by one of the nucleic acid molecules of (a) to (e) and having the activity of a Shaker channel and/or a Hyperkinetic beta subunit, preferably H-kv beta subunit A or C subtype respectively;
[0911] h) a nucleic acid molecule encoding a polypeptide comprising the consensus sequence as shown in SEQ ID NO: 102 and/or 103 respectively or one or more motifs selected from the group consisting of SEQ ID NO: 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124 and/or 125 and/or 126, 127 and/or 128 respectively;
[0912] i) nucleic acid molecule which comprises a polynucleotide, which is obtained by amplifying a cDNA library or a genomic library using the primers in SEQ ID NO: 88, 89; 90, 91; 92, 93; 94, 95; 96, 97; 98, 99 and/or 100, 101 respectively;
[0913] and
[0914] j) a nucleic acid molecule which is obtainable by screening a suitable nucleic acid library under stringent hybridization conditions with a probe comprising a complementary sequence of a nucleic acid molecule of (a) or (b) or with a fragment thereof, having at least 15 nt, preferably 20 nt, 30 nt, 50 nt, 100 nt, 200 nt or 500 nt of a nucleic acid molecule complementary to a nucleic acid molecule sequence characterized in (a) to (e) and encoding a polypeptide and having the activity of a Shaker channel and/or a Hyperkinetic beta subunit, preferably H-kv beta subunit A or C subtype respectively.
[0915] Item b4. A method of item b1 whereby the activity of said polypeptide with the activity of insect Shaker channel and/or a Hyperkinetic beta subunit, preferably H-kv beta subunit A or C subtype respectively is determinated electrophysiologically.
[0916] Item b5. A method of item b4 whereby the activity of said polypeptide with the activity of insect Shaker channel and/or a Hyperkinetic beta subunit, preferably H-kv beta subunit A or C subtype respectively is determinated by patch clamp or FLIPR.
[0917] Item b6. A method of item b2 whereby a gene coding for a polypeptide with the activity of an insect Shaker channel and/or a Hyperkinetic beta subunit, preferably H-kv beta subunit A or C subtype respectively is expressed in a mammalian cell.
[0918] Item b7. A method of item b2 whereby a gene coding for a polypeptide with the activity of an insect Shaker channel and/or a Hyperkinetic beta subunit, preferably H-kv beta subunit A or C subtype respectively is expressed in a mammalian cell selected from the group consisting of: CHO-cells, HEK293.
[0919] Item b8. A method of item b1 which comprises:
[0920] e) applying to an insect, to a population of insects or to the location wherein said insect is to be controlled an insect-controlling amount a compound identified according to item b1 d) and
[0921] f) determining of the growth or the viability of said treated insect or population of insects or of insects or population of insects on said location and untreated insect, population of insects or location and
[0922] g) selecting of compounds, which reduces the growth or the viability of said treated insect or population of insects or of insects or population of insects on said location following application of the compound of step e).
[0923] Item b9. An assay system comprising a host organism, tissue, cells or a cell digest thereof or a membrane, which has embedded, assembled, intercalated or incorporated a nucleic acid molecule selected from the group consisting of the nucleic acid molecule as depicted in item b3 a) to b3 j) and, based on the expression of this nucleic acid molecule, a polypeptide having the biological activity of a insect Shaker channel and/or a Hyperkinetic beta subunit, preferably H-kv beta subunit A or C subtype respectively, for identifying insecticidally active compound that reduces the activity of an insect Shaker channel and/or a Hyperkinetic beta subunit, preferably H-kv beta subunit A or C subtype respectively.
[0924] Item b10. The assay system of item b9 whereby the host organism is a stably transfected mammalian cell which expresses a nucleic acid molecule selected from the group consisting of the nucleic acid molecule as depicted in item b3 a) to b3 j).
[0925] Item b11. The assay system of item b10 whereby the mammalian cell is selected from the group consisting of: CHO-cells, HEK293, COS, HeLa, NIH3T3, BAK21, Jurkat, CV-1, HepC-2-, Xenopus oocyte, Sf9, S2, Sf21, Hi5, Pc12, U2OS.
[0926] Item b12. A method for killing or inhibiting the growth or viability of an insect, comprising applying to the insect a compound identified according to the method of item bl.
[0927] Item b13. A nucleic acid molecule selected from the group consisting of:
[0928] a) a nucleic acid molecule encoding a polypeptide comprising the polypeptide shown in SEQ ID NO: 73, 75, 77, 79, 81, 83, 85 and/or 87;
[0929] b) a nucleic acid molecule comprising a nucleic acid molecule shown in SEQ ID NO: 72, 74, 76, 78, 80, 82, 84 and/or 86;
[0930] c) a nucleic acid molecule, which, as a result of the degeneracy of the genetic code, can be derived from a polypeptide comprising a polypeptide sequence according to SEQ ID NO: 73, 75, 77, 79, 81, 83, 85 and/or 87;
[0931] d) a nucleic acid molecule having at least 50% identity with the nucleic acid molecule sequence of a polynucleotide comprising the nucleic acid molecule shown in SEQ ID NO: 72, 74, 76, 78, 80, 82, 84 and/or 86;
[0932] e) a nucleic acid molecule encoding a polypeptide having at least 50% identity with the amino acid sequence of the polypeptide encoded by the nucleic acid molecule of (a) to (c) and having the activity of a Shaker channel and/or a Hyperkinetic beta subunit, preferably H-kv beta subunit A or C subtype respectively;
[0933] f) nucleic acid molecule which hybridizes with a nucleic acid molecule of (a) to (c) under stringent hybridization conditions;
[0934] g) a nucleic acid molecule encoding a polypeptide which can be isolated with the aid of monoclonal or polyclonal antibodies made against a polypeptide encoded by one of the nucleic acid molecules of (a) to (e) and having the activity of a Shaker channel and/or a Hyperkinetic beta subunit, preferably H-kv beta subunit A or C subtype respectively;
[0935] h) a nucleic acid molecule encoding a polypeptide comprising the consensus sequence as shown in SEQ ID NO: 102 and/or 103 respectively or one or more motifs selected from the group consisting of SEQ ID NO: 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124 and/or 125 and/or 126, 127 and/or 128 respectively;
[0936] i) nucleic acid molecule which comprises a polynucleotide, which is obtained by amplifying a cDNA library or a genomic library using the primers in SEQ ID NO: 88, 89; 90, 91; 92, 93; 94, 95; 96, 97; 98, 99 and/or 100, 101 respectively;
[0937] and
[0938] j) a nucleic acid molecule which is obtainable by screening a suitable nucleic acid library under stringent hybridization conditions with a probe comprising a complementary sequence of a nucleic acid molecule of (a) or (b) or with a fragment thereof, having at least 15 nt, preferably 20 nt, 30 nt, 50 nt, 100 nt, 200 nt or 500 nt of a nucleic acid molecule complementary to a nucleic acid molecule sequence characterized in (a) to (e) and encoding a polypeptide and having the activity of a Shaker channel and a Hyperkinetic beta subunit, preferably H-kv beta subunit A or C subtype respectively.
[0939] Item b14. A nucleic acid construct comprising a nucleic acid molecule according to item b13.
[0940] Item b15. A vector comprising a nucleic acid construct according to item b14 or a nucleic acid molecule according to item b13.
[0941] Item b16. A transgenic cell comprising a vector according to item b15, a nucleic acid construct according to item b14 or a nucleic acid molecule according to item b13.
[0942] Item b17. A polypeptide encoded by a nucleic acid molecule according to item b13.
[0943] Item b18. Use of a polypeptide with the activity of an insect Shaker channel and a Hyperkinetic beta subunit, preferably H-kv beta subunit A or C subtype respectively as insecticidal target.
[0944] Item b19. Use of a polypeptide encoded by a nucleic acid molecule selected from the group consisting of the nucleic acid molecule as depicted in item b3 a) to b3 j) as insecticidal target.
[0945] Item c1. A method for identifying a insecticidal active compound that reduces the activity of an octopamine receptor selected from the group consisting of oa2, preferably from Drosophila melanogaster, Oamb, Oct-beta-2R and Oct-beta-3R which method comprises:
[0946] a) assembling in a membrane a polypeptide with the activity of an octopamine receptor selected from the group consisting of oa2, preferably from Drosophila melanogaster, Oamb, Oct-beta-2R and Oct-beta-3R which is originally not present said membrane,
[0947] b) applying at one side of the membrane the compound suspected of having the ability to inhibit the activity of said polypeptide which is originally not present said membrane,
[0948] c) determining the activity of said polypeptide and
[0949] d) identifying a compound applied in (b) that reduces the activity of said polypeptide.
[0950] Item c2. A method according to Item c1 whereby a gene coding for a polypeptide with the activity of an octopamine receptor selected from the group consisting of oa2, preferably from Drosophila melanogaster, Oamb, Oct-beta-2R and Oct-beta-3R is expressed in the membrane of a host cell.
[0951] Item c3. A method of any one of the Items c1 or c2 wherein the membrane comprises at least one polypeptide encoded by a nucleic acid molecule selected from the group consisting of:
[0952] a) a nucleic acid molecule encoding the polypeptide shown in SEQ ID NO: 130, 134, 138, 142, 146, 150, 154, 158, 162, 166, 170 and/or 174;
[0953] b) a nucleic acid molecule shown in SEQ ID NO: 129, 133, 137, 141, 145, 149, 153, 157, 161, 165, 169 and/or 173;
[0954] c) a nucleic acid molecule, which, as a result of the degeneracy of the genetic code, can be derived from a polypeptide sequence according to SEQ ID NO: 130, 134, 138, 142, 146, 150, 154, 158, 162, 166, 170 and/or 174
[0955] d) a nucleic acid molecule having at least 50% identity with the nucleic acid molecule sequence of a polynucleotide comprising the nucleic acid molecule shown in SEQ ID NO: 129, 133, 137, 141, 145, 149, 153, 157, 161, 165, 169 and/or 173;
[0956] e) a nucleic acid molecule encoding a polypeptide having at least 50% identity with the amino acid sequence of the polypeptide encoded by the nucleic acid molecule of (a) to (c) and having the activity of an octopamine receptor selected from the group consisting of oa2, preferably from Drosophila melanogaster, Oamb, Oct-beta-2R and Oct-beta-3R;
[0957] f) nucleic acid molecule which hybridizes with a nucleic acid molecule of (a) to (c) under stringent hybridization conditions;
[0958] g) a nucleic acid molecule encoding a polypeptide which can be isolated with the aid of monoclonal or polyclonal antibodies made against a polypeptide encoded by one of the nucleic acid molecules of (a) to (e) and having the activity of an octopamine receptor selected from the group consisting of oa2, preferably from Drosophila melanogaster, Oamb, Oct-beta-2R and Oct-beta-3R;
[0959] h) a nucleic acid molecule encoding a polypeptide comprising the consensus sequence as shown in SEQ ID NO: 177, 178 and/or 179 respectively or one or more motifs selected from the group consisting of SEQ ID NO: 180, 181, 182, 183, 184, 185, 186, 187, 188, 189 and/or 190, and/or 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207 and/or 208, and/or 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225 and/or 226 respectively;
[0960] i) nucleic acid molecule which comprises a polynucleotide, which is obtained by amplifying a cDNA library or a genomic library using the primers in SEQ ID NO: 131, 432; 135, 136; 139,140; 143, 144; 147, 148; 151, 152; 155, 156; 159, 160; 163, 164; 167, 168; 171, 172 and/or 175, 176 respectively;
[0961] and
[0962] j) a nucleic acid molecule which is obtainable by screening a suitable nucleic acid library under stringent hybridization conditions with a probe comprising a complementary sequence of a nucleic acid molecule of (a) or (b) or with a fragment thereof, having at least 15 nt, preferably 20 nt, 30 nt, 50 nt, 100 nt, 200 nt or 500 nt of a nucleic acid molecule complementary to a nucleic acid molecule sequence characterized in (a) to (e) and encoding a polypeptide and having the activity of an octopamine receptor selected from the group consisting of oa2, preferably from Drosophila melanogaster, Oamb, Oct-beta-2R and Oct-beta-3R.
[0963] Item c4. A method of Item c1 whereby the activity of said polypeptide with the activity of an octopamine receptor selected from the group consisting of oa2, preferably from Drosophila melanogaster, Oamb, Oct-beta-2R and Oct-beta-3R is determinated by fluorescence measurment.
[0964] Item c5. A method of Item c2 whereby the activity of said polypeptide with the activity of an octopamine receptor selected from the group consisting of oa2, preferably from Drosophila melanogaster, Oamb, Oct-beta-2R and Oct-beta-3R is determinated with Calcium concentration sensitive dyes.
[0965] Item c6. A method of Item c2 whereby a gene coding for a polypeptide with the activity of an octopamine receptor selected from the group consisting of oa2, preferably from Drosophila melanogaster, Oamb, Oct-beta-2R and Oct-beta-3R is expressed in a mammalian cell.
[0966] Item c7. A method of Item c2 whereby a gene coding for a polypeptide with the activity of an octopamine receptor selected from the group consisting of oa2, preferably from Drosophila melanogaster, Oamb, Oct-beta-2R and Oct-beta-3R is expressed in a mammalian cell selected from the group consisting of: CHO-cells, HEK293.
[0967] Item c8. A method of Item c1 which comprises:
[0968] e) applying to an insect, to a population of insects or to the location wherein said insect is to be controlled an insect-controlling amount a compound identified according to Item cl d) and f) determining of the growth or the viability of said treated insect or population of insects or of insects or population of insects on said location and untreated insect, population of insects or location and
[0969] g) selecting of compounds, which reduces the growth or the viability of said treated insect or population of insects or of insects or population of insects on said location following application of the compound of step e).
[0970] Item c9. An assay system comprising a host organism, tissue, cells or a cell digest thereof or a membrane, which has embedded, assembled, intercalated or incorporated a nucleic acid molecule selected from the group consisting of the nucleic acid molecule as depicted in Item c3 a) to c3 j) and, based on the expression of this nucleic acid molecule, a polypeptide having the biological activity of an octopamine receptor selected from the group consisting of oa2, preferably from Drosophila melanogaster, Oamb, Oct-beta-2R and Oct-beta-3R, for identifying insecticidally active compound that reduces the activity of an octopamine receptor selected from the group consisting of oa2, preferably from Drosophila melanogaster, Oamb, Oct-beta-2R and Oct-beta-3R.
[0971] Item c10. The assay system of Item c9 whereby the host organism is a stably transfected mammalian cell which expresses a nucleic acid molecule selected from the group consisting of the nucleic acid molecule as depicted in Item c3 a) to c3 j).
[0972] Item c11. The assay system of Item c10 whereby the mammalian cell is selected from the group consisting of: CHO-cells, HEK293, COS, HeLa, NIH3T3, BAK21, Jurkat, CV-1, HepC-2-,
[0973] Xenopus oocyte, Sf9, S2, Sf21, Hi5, Pc12, U2OS.
[0974] Item c12. A method for killing or inhibiting the growth or viability of an insect, comprising applying to the insect a compound identified according to the method of Item cl.
[0975] Item c13. A nucleic acid molecule selected from the group consisting of:
[0976] a) a nucleic acid molecule encoding the polypeptide shown in 2, 6, 10, 14, 18, 22, 26, 30, 34, 38, 42 and/or 46;
[0977] b) a nucleic acid molecule shown in SEQ ID NO: 129, 133, 137, 141, 145, 149, 153, 157, 161, 165, 169 and/or 173;
[0978] c) a nucleic acid molecule, which, as a result of the degeneracy of the genetic code, can be derived from a polypeptide sequence according to SEQ ID NO: 130, 134, 138, 142, 146, 150, 154, 158, 162, 166, 170 and/or 174;
[0979] d) a nucleic acid molecule having at least 50% identity with the nucleic acid molecule sequence of a polynucleotide comprising the nucleic acid molecule shown in SEQ ID NO: 129, 133, 137, 141, 145, 149, 153, 157, 161, 165, 169 and/or 173;
[0980] e) a nucleic acid molecule encoding a polypeptide having at least 50% identity with the amino acid sequence of the polypeptide encoded by the nucleic acid molecule of (a) to (c) and having the activity of an octopamine receptor selected from the group consisting of oa2, preferably from Drosophila melanogaster, Oamb, Oct-beta-2R and Oct-beta-3R;
[0981] f) nucleic acid molecule which hybridizes with a nucleic acid molecule of (a) to (c) under stringent hybridization conditions;
[0982] g) a nucleic acid molecule encoding a polypeptide which can be isolated with the aid of monoclonal or polyclonal antibodies made against a polypeptide encoded by one of the nucleic acid molecules of (a) to (e) and having the activity of an octopamine receptor selected from the group consisting of oa2, preferably from Drosophila melanogaster, Oamb, Oct-beta-2R and Oct-beta-3R;
[0983] h) a nucleic acid molecule encoding a polypeptide comprising the consensus sequence as shown in SEQ ID NO: 177, 178 and/or 179 respectively or one or more motifs selected from the group consisting of SEQ ID NO: 180, 181, 182, 183, 184, 185, 186, 187, 188, 189 and/or 190, and/or 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207 and/or 208, and/or 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225 and/or 226 respectively;
[0984] i) nucleic acid molecule which comprises a polynucleotide, which is obtained by amplifying a cDNA library or a genomic library using the primers in SEQ ID NO: 131, 132; 135, 136;
[0985] 139, 140; 143, 144; 147, 148; 151, 152; 155, 156; 159, 160; 163, 164; 167, 168; 171, 172 and/or 175, 176 respectively;
[0986] and
[0987] j) a nucleic acid molecule which is obtainable by screening a suitable nucleic acid library under stringent hybridization conditions with a probe comprising a complementary sequence of a nucleic acid molecule of (a) or (b) or with a fragment thereof, having at least 15 nt, preferably 20 nt, 30 nt, 50 nt, 100 nt, 200 nt or 500 nt of a nucleic acid molecule complementary to a nucleic acid molecule sequence characterized in (a) to (e) and encoding a polypeptide and having the activity of an octopamine receptor selected from the group consisting of oa2, preferably from Drosophila melanogaster, Oamb, Oct-beta-2R and Oct-beta-3R.
[0988] Item c14. A nucleic acid construct comprising a nucleic acid molecule according to Item c13.
[0989] Item c15. A vector comprising a nucleic acid construct according to Item c14 or a nucleic acid molecule according to Item c13.
[0990] Item c16. A transgenic cell comprising a vector according to Item c15, a nucleic acid construct according to Item c14 or a nucleic acid molecule according to Item c13.
[0991] Item c17. A polypeptide encoded by a nucleic acid molecule according to Item c13.
[0992] Item c18. Use of a polypeptide with the activity of an octopamine receptor selected from the group consisting of oat, preferably from Drosophila melanogaster, Oamb, Oct-beta-2R and Oct-beta-3R as insecticidal target.
[0993] Item c19. Use of a polypeptide encoded by a nucleic acid molecule selected from the group consisting of the nucleic acid molecule as depicted in Item c3 a) to c3 j) as insecticidal target.
[0994] Item c20. Use of manserin and/or cyproheptadine as insecticidal active ingredients.
[0995] Item d1. A method for identifying a insecticidally active compound that reduces the activity of an insect small-conductance Ca2+-activated potassium channel which method comprises:
[0996] a) assembling in a membrane a polypeptide with the activity of an insect small-conductance Ca2+-activated potassium channel which is originally not present said membrane,
[0997] b) applying at one side of the membrane the compound suspected of having the ability to inhibit the activity of said polypeptide which is originally not present said membrane,
[0998] c) determining the activity of said polypeptide and
[0999] d) identifying a compound applied in (b) that reduces the activity of said polypeptide.
[1000] Item d2. A method according to Item dl whereby a gene coding for a polypeptide with the activity of an insect small-conductance Ca2+-activated potassium channel is expressed in the membrane of a host cell.
[1001] Item d3. A method of any one of the Items dl or d2 wherein the membrane comprises at least one polypeptide encoded by a nucleic acid molecule selected from the group consisting of:
[1002] a) a nucleic acid molecule encoding the polypeptide shown in SEQ ID NO: 228, 230, 232;
[1003] b) a nucleic acid molecule shown in SEQ ID NO: 227, 229, 231;
[1004] c) a nucleic acid molecule, which, as a result of the degeneracy of the genetic code, can be derived from a polypeptide sequence according to SEQ ID NO: 228, 230, 232;
[1005] d) a nucleic acid molecule having at least 50% identity with the nucleic acid molecule sequence of a polynucleotide comprising the nucleic acid molecule shown in SEQ ID NO: 227, 229, 231;
[1006] e) a nucleic acid molecule encoding a polypeptide having at least 50% identity with the amino acid sequence of the polypeptide encoded by the nucleic acid molecule of (a) to (c) and having the activity of a small-conductance Ca2+-activated potassium channel;
[1007] f) nucleic acid molecule which hybridizes with a nucleic acid molecule of (a) to (c) under stringent hybridization conditions;
[1008] g) a nucleic acid molecule encoding a polypeptide which can be isolated with the aid of monoclonal or polyclonal antibodies made against a polypeptide encoded by one of the nucleic acid molecules of (a) to (e) and having the activity of a small-conductance Ca2+-activated potassium channel;
[1009] h) a nucleic acid molecule encoding a polypeptide comprising the consensus sequence as shown in SEQ ID NO: 239 or one or more motifs selected from the group consisting of SEQ ID NO: 240, 241, 242, 243, 244, 245, 246, 247, 248, 249, 250, 251, 252 and 253;
[1010] i) nucleic acid molecule which comprises a polynucleotide, which is obtained by amplifying a cDNA library or a genomic library using the primers in SEQ ID NO: 233, 234; 235, 236; 237, 238 respectively;
[1011] and
[1012] j) a nucleic acid molecule which is obtainable by screening a suitable nucleic acid library under stringent hybridization conditions with a probe comprising a complementary sequence of a nucleic acid molecule of (a) or (b) or with a fragment thereof, having at least 15 nt, preferably 20 nt, 30 nt, 50 nt, 100 nt, 200 nt or 500 nt of a nucleic acid molecule complementary to a nucleic acid molecule sequence characterized in (a) to (e) and encoding a polypeptide and having the activity of a small-conductance Ca2+-activated potassium channel.
[1013] Item d4. A method of Item dl whereby the activity of said polypeptide with the activity of insect small-conductance Ca2+-activated potassium channel is determinated electrophysiologically.
[1014] Item d5. A method of Item d4 whereby the activity of said polypeptide with the activity of insect small-conductance Ca2+-activated potassium channel is determinated by patch clamp.
[1015] Item d6. A method of Item d2 whereby a gene coding for a polypeptide with the activity of an insect small-conductance Ca2+-activated potassium channel is expressed in a mammalian cell.
[1016] Item d7. A method of Item d2 whereby a gene coding for a polypeptide with the activity of an insect small-conductance Ca2+-activated potassium channel is expressed in a mammalian cell selected from the group consisting of: CHO-cells, HEK293.
[1017] Item d8. A method of Item dl which comprises:
[1018] e) applying to an insect, to a population of insects or to the location wherein said insect is to be controlled an insect-controlling amount a compound identified according to Item dl d) and
[1019] f) determining of the growth or the viability of said treated insect or population of insects or of insects or population of insects on said location and untreated insect, population of insects or location and
[1020] g) selecting of compounds, which reduces the growth or the viability of said treated insect or population of insects or of insects or population of insects on said location following application of the compound of step e).
[1021] Item d9. An assay system comprising a host organism, tissue, cells or a cell digest thereof or a membrane, which has embedded, assembled, intercalated or incorporated a nucleic acid molecule selected from the group consisting of the nucleic acid molecule as depicted in Item d3 a) to d3 j) and, based on the expression of this nucleic acid molecule, a polypeptide having the biological activity of a insect small-conductance Ca2+-activated potassium channel, for identifying insecticidally active compound that reduces the activity of an insect small-conductance Ca2+-activated potassium channel.
[1022] Item d10. The assay system of Item d9 whereby the host organism is a stably transfected mammalian cell which expresses a nucleic acid molecule selected from the group consisting of the nucleic acid molecule as depicted in Item d3 a) to d3 j).
[1023] Item d11. The assay system of Item d10 whereby the mammalian cell is selected from the group consisting of: CHO-cells, HEK293, COS, HeLa, NIH3T3, BAK21, Jurkat, CV-1, HepC-2-, Xenopus oocyte some more?. Sf9, S2, Sf21, Hi5, Pc12, U2OS.
[1024] Item d12. A method for killing or inhibiting the growth or viability of an insect, comprising applying to the insect a compound identified according to the method of Item dl.
[1025] Item d13. A nucleic acid molecule selected from the group consisting of:
[1026] a) a nucleic acid molecule encoding the polypeptide shown in SEQ ID NO: 230, 232;
[1027] b) a nucleic acid molecule shown in SEQ ID NO: 229, 231;
[1028] c) a nucleic acid molecule, which, as a result of the degeneracy of the genetic code, can be derived from a polypeptide sequence according to SEQ ID NO: 230, 232;
[1029] d) a nucleic acid molecule having at least 50% identity with the nucleic acid molecule sequence of a polynucleotide comprising the nucleic acid molecule shown in SEQ ID NO: 229, 231;
[1030] e) a nucleic acid molecule encoding a polypeptide having at least 50% identity with the amino acid sequence of the polypeptide encoded by the nucleic acid molecule of (a) to (c) and having the activity of a small-conductance Ca2+-activated potassium channel;
[1031] f) nucleic acid molecule which hybridizes with a nucleic acid molecule of (a) to (c) under stringent hybridization conditions;
[1032] g) a nucleic acid molecule encoding a polypeptide which can be isolated with the aid of monoclonal or polyclonal antibodies made against a polypeptide encoded by one of the nucleic acid molecules of (a) to (e) and having the activity of a small-conductance Ca2+-activated potassium channel;
[1033] h) a nucleic acid molecule encoding a polypeptide comprising the consensus sequence as shown in SEQ ID NO: 239 or one or more motifs selected from the group consisting of SEQ ID NO: 240, 241, 242, 243, 244, 245, 246, 247, 248, 249, 250, 251, 252 and 253;
[1034] i) nucleic acid molecule which comprises a polynucleotide, which is obtained by amplifying a cDNA library or a genomic library using the primers in SEQ ID NO: 233, 234; 235, 236; 237, 238 respectively;
[1035] and
[1036] j) a nucleic acid molecule which is obtainable by screening a suitable nucleic acid library under stringent hybridization conditions with a probe comprising a complementary sequence of a nucleic acid molecule of (a) or (b) or with a fragment thereof, having at least 15 nt, preferably 20 nt, 30 nt, 50 nt, 100 nt, 200 nt or 500 nt of a nucleic acid molecule complementary to a nucleic acid molecule sequence characterized in (a) to (e) and encoding a polypeptide and hiving the activity of a small-conductance Ca2+-activated potassium channel.
[1037] Item d14. A nucleic acid construct comprising a nucleic acid molecule according to Item d13.
[1038] Item d15. A vector comprising a nucleic acid construct according to Item d14 or a nucleic acid molecule according to Item d13.
[1039] Item d16. A transgenic cell comprising a vector according to Item d15, a nucleic acid construct according to Item d14 or a nucleic acid molecule according to Item d13.
[1040] Item d17. A polypeptide encoded by a nucleic acid molecule according to Item d13.
[1041] Item d18. Use of a polypeptide with the activity of an insect small-conductance Ca2+-activated potassium channel as insecticidal target.
[1042] Item d19. Use of a polypeptide encoded by a nucleic acid molecule selected from the group consisting of the nucleic acid molecule as depicted in Item d3 a) to d3 j) as insecticidal target.
Examples
Cell Biology
[1043] Molecular Biology: The full-length Sha1 CDS (coding sequence) was subcloned into the pcDNA3/Neo(-) expression vector using the EcoR1 restriction site. The Sha1_delN mutant has an N-terminal deletion for the 2-40 aa coding region. The deletion mutation was inserted into the pcDNA3_Sha1 construct using Sha1_del--2-4aa_fwd (5' gcagaattcgccatgccaccatggagaagacctga tcaacgtctccgg-3') and Sha1_del--2-4aa_rev (5'-ccggagacgttgatcaggagcttctccatggtggcaagggc gaattctgc-3') primers and the XL Site-Directed Mutagenesis Kit (Stratagene). A unique AscI restriction site was inserted before the ATG start codon in pcDNA_Sha1 and pcDNA_Sha1_delN constructs by site-directed mutagenesis. The full length Sha1 and Sha1_delN inserts were subcloned into the pcDNA3_AcGFPC1 vector (AscI and HindIII restriction sites) to obtain an AcGFP chimera (FIG. 1) The AcGFP is thus tagged to the N-terminus of both these constructs. All constructs were double-stranded sequenced for the Sha1 coding region to confirm sequence integrity. The dominant-negative Sha1_DelNW362F mutant was made by changing the tryptophan (W) to phenylalanine (F) at position 362 in the pore region. KChIP, a Sha1 accessory protein, was cloned from Drosophila and subcloned into the pcDNA3.1/Zeo vector.
[1044] FIG. 1: Primary Sha1 clone. Vector NTI-generated map of the primary Sha1 clone showing the major features of the construct. The Sha1 coding region is 1473 bp in length.
[1045] FIG. 2: Primary KChIP clone. Vector NTI-generated map of the primary KChIP clone showing the major features of the construct. The KChIP coding region is 621 bp in length. The expression construct, pcDNA3.1-Zeo-KChIP-intron1 (data not shown, notebook 1049294 #5) contains a ˜700 bp intron to aid in cloning, and places the KChIP ORF downstream of a CMV promoter.
[1046] FIG. 3: Sha1 and KChIP expression constructs. Maps of pcDNA3/AcGFP-Sha1 and pcDNA3/AcGFP-Sha1delN2-40aa and links to Vector NTI pcDNA3_Sha1DelN and pcDNA3_Zeo_KCHiP_intron1 constructs.
[1047] FIG. 4: Patch clamp data for full length and truncated constructs Sha1 and Sha1_delN when coexpressed with AmCyan as well as AcGFP-tagged versions (top). Schematic representation of GFP-Sha1 pore mutant and patch clamp data for wild type and pore mutant, showing that the measured currents indeed arise from overexpressed Sha1 and not an upregulated endogenous current (bottom).
[1048] Expression in mammalian cells: Wild type and mutant Sha1 channels were transiently expressed in CHO cells and tested for function at 48 hrs by whole-cell voltage clamp recordings. The untagged Sha1 constructs were cotransfected with pcDNA3_AmCyan. The full length Sha1 and Sha1_delN mutant mediated functional channel activity. The GFP tag at the amino terminus did not alter channel function. The Sha1_delN-W362F mutant did not form functional channels.
[1049] Stable cell line generation: Wild type CHO cells were transfected with AcGFP-Sha1 and AcGFP-Sha1_delN DNA using FuGene Transfection Reagent (Roche). Stable clonal lines were generated by selecting the cells with G418 (900 ug/ml) at 24 hrs post transfection. 25 colonies were picked for each construct and evaluated for GFP expression using a fluorescence microscope. 70-75% of the clonal lines had very weak or no GFP expression. Based on the fluorescence rating, some of the high and medium GFP expressing clonal lines were tested for Sha1 activity by patch clamp (Table 1): The Sha1_delN clones (Clone 10 & 15) had higher current density than the full length Sha1 clones. Thus, the development of an assay was proceeded with these 2 clones.
TABLE-US-00002 TABLE 1 Summary of Shal clone screening showing relative fluorescent response and current density. Clone Fluorescence rating Current Density (pA/pF) Shal C7 ++ 54 (58; 50) Shal C10 ++ 86 (89; 83) Shal C16 ++ 41 (60; 21) Shal C20 ++ 36 (37; 35) Shal C21 +++ 45 (41; 48) Shal_DelN C5 ++ n/a Shal_DelN C8 ++ no current Shal_DelN C10 ++ 337 (216; 457) Shal_DelN C11 ++ no current Shal_DelN C15 +++ 107 (38; 118; 166)
[1050] Sha1_DelN C10 and C15 were tested for function on the FLIPR using the Molecular Devices blue membrane potential dye. The cells were seeded at 60K cells/well in 96-well Costar plates in complete media and assayed for function at 24 hrs. Depolarization with 15-60 mM KCl caused a 2-2.8 fold higher activity in the clonal line than the pcDNA control cell line (FIG. 5). Clone 10 had slightly higher activity than clone 15.
[1051] FIG. 5: Sha1_DelN clones tested on FLIPR with KCl depolarization.
[1052] We also tested some known K-channel blockers on channel activity on the FLIPR (FIG. 6). Bay K8644, nicardipine, quinidine and niflumic acid showed dose dependent inhibition of KCl depolarization in both the Sha1_delN clonal lines and the control pcDNA3 cell line. Flecainide did not show any inhibition on the clones and control cell lines at the concentrations tested. The Sha1_delN clonal cell lines lost their GFP expression and assay window with cell passage. At passage 12, only 10-15% of the cell population was GFP positive.
[1053] FIG. 6: K channel blocker inhibition curves tested on the FLIPR.
[1054] Sha1_delN C10 cells were subcloned by flow-sorting. The cells were flow-sorted into 96-well tissue culture plates to obtain GFP-positive single cells. Several clonal lines were expanded and tested for function using KCl depolarization on the FLIPR (FIG. 7).
[1055] FIG. 7: Screening Sha1_delN Clone10 subclones by KCl depolarization on FLIPR.
[1056] Based on the FLIPR data, clones 10-2, 10-3 and 10-6 were further tested by patch clamp (FIG. 8). Clones 10-3 and 10-6 had high currents in the whole-cell patch clamp studies.
[1057] FIG. 8: Patch clamp data for clones 10-2, 10-3 and 10-6. IV curves showing the relationship of applied voltage to current.
[1058] A Sha1-delN clone 10-3 subclone maintained the GFP expression over several cell passages. At Passage12, about 80-85% of the cell population was GFP positive (FIG. 9).
[1059] FIG. 9: Sha1_DelN C10-3 cells at passage 12 showing stability of fluorescence over time. Left panel--fluorescence excitation, right panel--normal light.
Increase of Assay Window:
[1060] The effects of barium (Ba2+) on Sha1_delN function were tested. Barium is known to inhibit some open rectifier and inward rectifier K-channel activities. Cells were dye loaded in the presence of BaCl2 for 1 hr at RT and assayed on the FLIPR using KCl depolarization for channel activation. Ba2+ at a concentration of 4-5 mM significantly reduced fluorescent responses in CHO_pcDNA3 control cells without any significant reduction in the Sha1_delN channel activity with KCl depolarization (FIG. 10).
[1061] FIG. 10: Effect of BaCl2 on Sha1 channel activity on FLIPR.
[1062] Clone 10-3 had a higher assay window on FLIPR in the presence of Ba2+, than clone 10-6. Sha1 outward currents were not inhibited by Ba2+ as shown by electrophysiology. The idea is that in pcDNA3 cells, Ba2+ inhibits the endogenous outward K+ currents leading to an accumulation in intracellular Potassium and therefore depolarization of the cells. Thus, with 0.5 mM KCl in the external solution and increasing Ba2+ concentration, the membrane potential is increased with complete collapse of the wild-type cell assay window at 5 mM BaCl2. In contrast the Sha1_delN clone 10-3 cell line still has significant Sha1 outward K+ current activity at 5 mM Ba2+ resulting in an assay window. Sha1_delN clone 10-3 cells were tested for function on FLIPR up to passage 20 (P20, FIG. 11). The cells still had a significant assay window at passage window at P20. However, the size of the window is reduced with increase in cell passage.
[1063] FIG. 11: Sha1_delN C10-3 function on FLIPR at passage 20.
Increased Currents by Coexpression of an Accessory Protein:
[1064] For some ion channels, currents can be increased by coexpression of accessory proteins, which is shown in FIG. 12.
[1065] FIG. 12: CHO-K1 cells stably expressing Sha1_delN were either mock transfected (red trace, lower line) or cotransfected with KChIP (blue trace, upper line).
Additional Electrophysiology
[1066] Chinese hamster ovary (CHO) cells transfected with (a) a Drosophila Sha1 gene (b) a Drosophila Sha1 pore mutant gene and (c) a Drosophila Sha1+KChIP gene, and were used for all measurements. Cells were plated in 35 mm Petri dishes 2-6 hours before the experiment.
[1067] Data were acquired and analyzed using pClamp software (version 9.0.1.16). The whole-cell configuration of the patch-clamp technique was used to voltage clamp cells at room temperature (22-25° C.). Pipettes were pulled from borosilicate glass capillaries (#8250, Garner Glass, Claremont, Calif.) using a DMZ Universal Puller (Zeitz, Munich, Germany) and had resistances of 1-2 MOhm when filled with pipette solution and measured in bath solution. The liquid junction potential between bath and pipette solution was always compensated before the formation of a gigaohm seal.
[1068] Membrane current was measured under whole-cell clamp, sampled at 2 kHz and filtered at 1 kHz by an Axoclamp 200B (Axon Instruments). Capacitance currents were electronically compensated at the beginning of each experiment. P/4 leak correction was applied.
[1069] To study Sha1 currents on CHO cells, cells were held at -70 mV and a family of 500 ms test voltage pulses was applied starting from -70 to +70 mV, or +100 mV, in 10 mV increments. The amplitude, as measured for the current-voltage relationship, was defined as the maximal current at a given membrane potential.
[1070] Bath solution: NaCl (160 mM), KCl (2.5 mM), MgCl2 (1 mM), CaCl2 (2 mM), HEPES (10 mM) pH 7.4 (with NaOH)
[1071] Pipet solution: KCl (160 mM), MgCl2 (5 mM), EGTA (1 mM), CaCl2 (0.1 mM), NaGTP (0.1 mM), K2ATP (3 mM), HEPES (5 mM) pH 7.4 (with NaOH)
Additional Electrophysiology
[1072] By way of further assay validation, the presumptive Sha1 blocker arachidonic acid (J. Neurosci. 1996, 16:2522) was tested on Sha1/KChIP 20 cells (FIG. 13).
[1073] FIG. 13: Sha1/KChIP inhibited by arachidonic acid. Sha1/KChIP 20 cells were perfused with a 100 uM [final] solution of arachidonic acid in bath solution. Pre- and post-compound currents were measured under whole-cell clamp. Left panel: Integrations of the areas under the curves (total current). Right panel: Peak current amplitudes.
[1074] Results and conclusions: Complete inhibition of total Sha1/KChIP current was obtained after incubation with arachidonic acid for five minutes, thus confirming a key indicator of this channel.
ShIP_GFP stable clones in CHO cell line, shown in FIG. 14.
[1075] FIG. 14: IN curves for clones 18-13-6 and 18-13-20.
[1076] Buffer: KCNQ Int/Ext solution
[1077] Protocol: C:\FJB\patch clamp\Patch_parmeters\CHO cells_Sha1_IV 500 ms_to 70 mV_Whole_cell.pro
Clone Generation and Selection
[1078] Transfection: Sha1_delN 10-3 cells were plated in a 35 mm 6-well plates at 2.5×105 cells/well and each well transfected 6 hours later with 1 ug pcDNA3.1/Zeo(+)KChIP DNA using FuGENE transfection reagent (Roche) and the manufacturer's recommendations. A mock transformation without KChIP DNA was also done to monitor antibiotic selection. For a "Neo/Zeo" control cell line, pcDNA3.1/Neo CHO cells at passage 44 were transfected with 1 ug pcDNA3.1/Zeo DNA. Cells were passaged 24 hr later to 175 cm2 flasks @ 750K cells/flask and placed under antibiotic selection (900 ug/ml G418; 1 mg/ml Zeocin). For the Sha1/KChIP transfection, once selection was complete (four days), cells were diluted to 12 cells/ml in complete culture medium and 250 ul was dispensed into each well of four 96-well culture plates. Wells containing a single colony were identified after one week's growth and picked for expansion and testing after an additional week. The Neo/Zeo control cells were propagated as a polyclonal pool.
Clone Screening:
[1079] 19 individual Sha1/KChIP clones were screened for function (FIG. 15). The amplitude and kinetic profile in response to depolarization with KCl was used to select clones for further evaluation.
[1080] FIG. 15: Sha1/KChIP clone screening and Neo/Zeo control line. ScreenWorks screenshots showing primary FLIPR data and a reduced data table for the 19 clones and the Neo/Zeo pool (middle panel, wells H4-6). Cells were plated at an estimated 5×104 cells/well into 96-well assay plates (TC-treated, BD Biosciences) and incubated overnight at 37° C./5% CO2. Culture medium was removed and replaced with 1× blue membrane potential dye in assay buffer and incubated for 0.5 hour at 25° C. The assay was read on a FLIPR Tetra by recording baseline fluorescence for 20 sec, and recording an additional 180 sec after activation with isometrically-substituted KCl (60 mM [final], columns 1, 2, 4 & 5). Columns 3 & 6 show the responses to normal assay buffer (0.5 mM KCl [final]). Subtract bias was set at 1 and negative control correction was OFF. For the data table, subtract bias was at 1 and negative control correction (from columns 3 & 6) was ON.
Results and Conclusions:
[1081] Seven Sha1/KChIP clones were identified for further testing (blue rows in data table). Clone 18 (left panel, row C) was ultimately selected for two rounds of subcloning in order to stabilize the response and reduce heterogeneity. Importantly, as the Neo/Zeo cell line was found to be essentially unresponsive to the activation method used (middle panel, wells H4 & 5), the requirement for it as a control line was effectively eliminated.
Intermediate Subclone Generation:
[1082] Sha1/KChIP clones 17 & 18 were plated for subcloning as described previously. A combined total of 66 subclones were screened, and number 18-13 was selected as the source for final subclone generation (data not shown, notebook 1050115 #8).
Final Subclone Screening and Selection:
[1083] Sha1/KChIP subclone 18-13 was plated for final subcloning as described previously. Thirty-four subclones were evaluated for response to KCl depolarization (FIG. 16).
[1084] FIG. 16: Sha1/KChIP final subclone screening. Reduced FLIPR data from subclone screening resulting in the final cell line. Cells were plated at an estimated 5×104 cells/well into 96-well assay plates (TC-treated, BD Biosciences) and incubated overnight at 37° C./5% CO2. Culture medium was aspirated and replaced with 1× blue membrane potential dye in assay buffer and incubated for 0.5 hour at 25° C. The assay was read on a FLIPR Tetra by recording baseline fluorescence for 20 sec, and recording an additional 60 sec after activation with isometrically-substituted KCl (60 mM [final]). No data reductions were used during data export. Both the raw response (RFU, relative fluorescence units, blue bars) and ratioed responses (diamonds) are shown. The ratioed response is equal to the raw response divided by the signal test (i.e., baseline fluorescence)--this was done to compensate for variations in the number of cells plated for each clone. The green cells in the "ratio" column indicate clones with a raw/baseline ration >1. Clones were chosen for further evaluation by considering one and/or both reductions (indicated by marked lines).
Results and Conclusions:
[1085] Seven cell lines were chosen for further evaluation (marked in FIG. 15) on the FLIPR (data not shown) and in electrophysiology (see "Additional Electrophysiology" for examples). After testing clones via conventional patch clamp, it was decided to move forward with Sha1/KChIP 18-13-20. This cell line, known as Sha1/KChIP 20 (or ShIP 20), was used, unless indicated otherwise, in all subsequent HTS assay and screen development.
Assay & Screen Development
HTS Screening Strategy
[1086] This assay uses two fluid additions to permit the detection of activators and antagonists in a single experiment (FIG. 17). In screening, test compounds are added in the first addition and allowed to incubate for three minutes. An activating dose of KCl is then introduced in the second addition and the fluorescence read for an additional three minutes. Controls are run for both additions. A response (rise in fluorescence) significantly greater than that from buffer/DMSO in the first addition indicates that the compound may be an activator (green trace). A reduced response after the second addition indicates that the compound may be an antagonist (blue trace).
[1087] FIG. 17: Sha1/KChIP assay FLIPR response profiles. Sample control group averages from BioFocus compound screening showing first and second addition assay windows, and potential activator and antagonist profiles.
Basic Test Protocol
[1088] Cells were dispensed in a 50 μl volume containing 7,500 cells into 384-well TC clear/black assay plates (Greiner 781091) using a Multidrop 384 dispenser, incubated at ambient temperature for one hour (to reduce edge effects), and incubated overnight at 37° C./5% CO2. The cells were assayed 18-24 hours after seeding, at which point they were just approaching confluency in the wells. Culture medium was removed by flicking and tapping it out of the plate, and cells were loaded with 20 ul/well of 1× blue membrane potential dye in assay buffer for 30 minutes at 25° C. After 30 minutes the assay plate was placed into the FLIPR and run using a two-addition protocol. The first addition (5×, 5 ul) contained 2.5% DMSO in assay buffer. The pipetting height was set at 15 and the speed 20. The plate was read for three minutes after this addition. The second addition (2×, 25 ul) was either assay buffer or 120 mM isometrically-substituted KCl (i.e., KCl substituted for NaCl on a 1:1 molar basis). The height was 20 and the speed 25. Aspirate speeds were set at the lowest values and no hold or expel volumes applied. The plate was read for an additional three minutes after the second addition. The exported statistics were typically configured as stat1=average of 190-200 (the interval just before the first addition) and stat2=maximum of 260-maximum allowed. Subtract bias was set at 1 and negative control correction was OFF. Z' statistics (an index of "screenability", Z'>0.5=single-pass screen) were calculated using the following formula:
Z'=1-(3σmax+3σmin)/(Iμmax-μminI)).
Use of Membrane Potential Dye in Assay
[1089] The Sha1 cell line assay used the addition of membrane potential dye in the activation buffer to increase the size of the assay window (data not shown). After the addition of KChIP to the Sha1 cell line, we examined whether this requirement for dye could be dropped in order to simplify the protocol and reduce the cost of the assay for both development and HTS (FIG. 18).
[1090] FIG. 18: Use of dye in activation buffer. Sha1/KChIP (ShIP), Sha1 and Neo (Sha1 control) cell lines were plated at 5×104 cells/well into 96-well assay plates (TC-treated, BD Biosciences) and incubated overnight at 37° C./5% CO2. Culture medium was aspirated and replaced with 50 ul 1× blue membrane potential dye in assay buffer and incubated for 0.5 hour at 25° C. The assay was read on a FLIPR Tetra by recording baseline fluorescence for 20 sec, and recording an additional 60 sec after addition of 50 ul isometrically-substituted KCl (60 mM [final]) with and without membrane potential dye. For the data export, subtract bias was set at 1. Error bars are +/-1 SD.
Results and Conclusions:
[1091] The removal of membrane potential dye from the activation buffer resulted in a significantly reduced fluorescence change upon KCl activation for all three cell lines. The Z' statistic for Sha1/KChIP decreased from 0.77 to 0.59, which is still well above the single-pass screening cutoff of 0.5 (data not shown). As the addition of dye to the activation buffer would complicate the HTS protocol, and as the estimated potential cost savings over the course of development and screening was considerable, it was decided to progress without the use of dye in the activation buffer. The reduction in the Z' statistic was largely recovered during subsequent development.
Assay Plate Selection
[1092] An experiment was undertaken to compare the assay's performance between our standard BD Falcon 353962 plates and the less-expensive Greiner 781091 384-well tissue culture-treated assay plates (FIG. 19) Note: Greiner is the manufacturer of the BD Falcon plates.
[1093] FIG. 19: Comparison of BD and Greiner 384-well assay plates: Sha1/KChIP 20 cells were plated at 7500 cells/well into BD and Greiner 384-well assay plates and incubated overnight at 37° C./5% CO2. Culture medium was flicked out and replaced with 20 ul 1× blue membrane potential dye in assay buffer and incubated for 0.5 hour at 25° C. The assay was read on a FLIPR Tetra. The first addition (5×, 5 ul) contained 2.5% DMSO in assay buffer, and was read for three minutes. The second addition (2×, 25 ul) consisted of isometrically-substituted KCl at dose, and was also read for three minutes. Each condition was measured from 2×48 replicates to allow the calculation of Z's. The exported statistics were configured as stat1=average of 190-200 and stat2=maximum of 260-maximum allowed. Subtract bias was set at 1. Left panel: Window sizes (calculated as stat2-stat1) as a function of [KCl] for the two plate types. Right panel: Z' statistics calculated as a function of [KCl] for the two plate types.
Results and Conclusions:
[1094] There was a small but consistent decrease (˜200 RFU) in the assay window size when using Greiner assay plates in this test. The Z' statistics, however, were nearly identical due to slightly lower CVs on the Greiner plates. As the estimated potential cost savings over the course of development and screening was substantial, it was decided to continue development using the Greiner plates, and all subsequent work was done with them.
Assay Buffer Preparation Method Testing
[1095] While experimental results during early assay development indicated the use of freshly-prepared assay buffers, this requireMent was eventually dropped during screen development (data not shown). The preparation method (additions of stock solutions of KCl, NaCl and DMSO to base buffer) remained in use however, and a volume-compensated buffer preparation calculator is included in this document.
Cell Density Optimization
[1096] Plating densities from 5,000 to 15,000 cells/well were examined for mean response and standard deviation, and Z' statistics were calculated (FIG. 20).
[1097] FIG. 20: Cell density optimization. Reduced FLIPR data showing statistics for full plates at the indicated cell densities with resulting Z' statistics. Platings below 5000 cells/well did not yield a monolayer the next day and were not tested. Sha1/KChIP cells were plated at the indicated densities incubated at 37° C./5% CO2 and assayed the following day. Cells were loaded with 20 ul 1× dye/well for 0.5 hour at 25° C. A two-addition protocol was used. The first addition (5×) was 5 ul 2.5% DMSO in assay buffer (0.5% [final]) read for 180 sec, and the second (2×) was 25 ul isometrically-substituted KCl in assay buffer (60 mM [final]) read for an additional 180 sec. The statistics were calculated using the average of reads 190-200 (minimum response) and the maximum of reads 260-end (maximum response). Spatial uniformity correction was ON. The bars show response to activation, and the line shows the trend in Z' statistics
Results and Conclusions:
[1098] This assay tended to perform better at lower cell densities. It was decided to move development forward with 7500 cells/well (rather than 5000 cells/well, as would seem indicated) to avoid potential problems due to variations in cell counting and plating.
Dye Concentration
[1099] The performance of Sha1/KChIP intermediate subclones 18-13 and 18-28 was examined using 0.4× membrane potential dye (vs. 1×) as a possible cost saving measure (FIG. 21).
[1100] FIG. 21: Dye concentration evaluation. Sha1/KChIP clones 18-13 and 18-28 were plated at 5×104 cells/well into 96-well assay plates (TC-treated, BD Biosciences) and incubated overnight at 37° C./5% CO2. Culture medium was removed and replaced with 50 ul 1× or 0.4× blue membrane potential dye in assay buffer and incubated for 0.5 hour at 25° C. The assay was read on a FLIPR Tetra by recording baseline fluorescence for 20 sec, and recording an additional 60 sec after addition of 50 ul isometrically-substituted KCl (60 mM [final]). Maximum RFU values are shown. For the data export, subtract bias was set at 1 and negative control correction was ON. Error bars are +/-1 SD.
Results and Conclusions:
[1101] Dye used at 0.4× resulted in an assay window reduced to 70% the size of that obtained with full (1×) dye for both clones tested. To preserve the full assay window it was decided to carry out all subsequent development using 1× dye.
DMSO Tolerance
[1102] A cell-based assay's sensitivity to DMSO in the first addition factors into calculations made about the ability to screen compounds at desired levels from particular DMSO stock concentrations. The effects of first addition DMSO on assay window size and variability, and the resulting Z' statistics were examined (FIG. 22).
[1103] FIG. 22: Sha1/KChIP assay window size, standard deviations and Z' statistics. Sha1/KChIP18-13 cells were plated at 7500 cells/well into Greiner 384-well assay plates and incubated overnight at 37° C./5% CO2. Culture medium was flicked out and replaced with 20 ul 1× blue membrane potential dye in assay buffer and incubated for 0.5 hour at 25° C. The assay was run on a FLIPR Tetra using the following conditions: the first addition (5×, 5 ul) contained 5×[final] DMSO in assay buffer, and was read for three minutes. The second addition (2×, 25 ul) consisted of isometrically-substituted KCl (120 mM), and was read for an additional three minutes. Each condition was measured from 64 replicates to allow the calculation of Z's. The exported statistics were configured as stat1=average of 180-200 and stat2=maximum of 260-380. Subtract bias was set at 1 and negative control correction was OFF. Blue bars (stat2-stat1) show response to activation, and the red line shows the trend in Z' statistics. Error bars are +/-1 SD.
Results and Conclusions:
[1104] While standard deviations remained relatively constant, with the exception of 1% DMSO [final], window sizes decreased with increasing DMSO and, necessarily, there occurred a corresponding decrease in Z' statistics. As a practical matter, given the concentrations of the compound DMSO stocks available to us (usually 2 or 10 mM), we can limit the cells' exposure to 0.5% DMSO [final]. In this experiment, that condition yielded an assay window of >2000 RFUs and a Z' statistic of 0.73.
Dye Loading Time
[1105] The effect of progressively longer dye loading times on assay window size, standard deviation and resulting Z' statistic was examined (FIG. 23).
[1106] FIG. 23: Effect of dye loading time on assay statistics. Filtered full-plate statistics showing the effect of dye loading times between 0.5 and 3 hours on window size, standard deviation and Z' statistics. Sha1/KChIP18-13 cells were plated at 7500 cells/well in 384-well assay plates and tested the following day. Culture medium was removed by flicking the plates and cells loaded with 20 ul 1× membrane potential dye per well for 0.5-3 hours at 25° C. A two-addition protocol was used. The first addition (5×) was 5 μl 2.5% DMSO in assay buffer (0.5% [final]) read for 180 sec, and the second (2×) was 25 ul 120 mM isometrically-substituted KCl in assay buffer (60 mM [final]) read for an additional 180 sec. Statistics were calculated using the average of reads 190-200 (minimum response) and the maximum of reads 260-end (maximum response). Subtract bias was set at 1 and negative control correction was OFF. green bars (stat2-stat1) show response to activation, and the blue line shows the trend in Z' statistics. Error bars are +/-1 SD. The data were minimally corrected for systematic artifacts.
Results and Conclusions:
[1107] Dye loading times between 0.5 and 3 hours all produced Z' statistics above 0.7. There was an assay window maximum at 1.5 hours and a Z' maximum at 2-2.5 hours. A visual inspection of the cells at three hours showed them to be in good condition. It was coneluded that all dye loading times from 0.5-3 hours result in assays that perform well.
Cell Temperature for Dye Loading
[1108] A comparison was made regarding dye-loading temperature between cell plates allowed to cool at room temperature (25° C.) for one hour and those plates dye-loaded directly from 37° C. incubation (FIG. 24).
[1109] FIG. 24: The effects of pre-cooling cells to room temperature prior to dye-loading. Sha1/KChIP (ShIP), Sha1 and Neo (Sha1 control) cell lines were plated at 5×104 cells/well into 96-well assay plates (TC-treated, BD Biosciences) and incubated overnight at 37° C./5% CO2 for testing the following day. Culture medium was removed and replaced with 50 ul 1× blue membrane potential dye in assay buffer and incubated for 0.5 hour at 25° C. The assay was read on a FLIPR Tetra by recording baseline fluorescence for 20 sec, and recording an additional 60 sec after addition of 50 ul isometrically-substituted 120 mM KCl (60 mM [final]). For the data export, subtract bias was set at 1 and negative control correction was ON. Error bars are +/-1 SD.
Results and Conclusions:
[1110] There was a statistically negligible difference between cool and warm cells for Sha1/KChIP, no difference for Sha1, and a significant reduction in response of the pre-cooled Neo control line. It was decided that subsequent development would be done by dye-loading assay plates that had been equilibrated at room temperature for one hour as the reduction of background response (as seen in the control line) was a desirable outcome. The requirement for pre-cooling assay plates places only a minor burden on the HTS protocol.
Activator EC50s
[1111] A dose response was established for Sha1/KChIP 18-13 by isometric KCl activation (FIG. 25).
[1112] FIG. 25: Group-averaged primary FLIPR data and preliminary EC50. Sha1/KChIP18-13 cells were plated at 7500 cells/well in 384-well assay plates and tested the following day. Culture medium was removed by flicking the plates and cells loaded with 20 ul 1× membrane potential dye per well for 0.5 hours at 25° C. A two-addition protocol was used. The first addition (5×) was Sul 2.5% DMSO in assay buffer (0.5% [final]) read for 180 sec, and the second (2×) was 25 ul isometrically-substituted KCl at dose in assay buffer (0-60 mM [final]) read for an additional 180 sec. Statistics were calculated using the average of reads 180-200 and the maximum of reads 260-maximum allowed. Subtract bias was set at 1 and negative control correction was OFF. Top panel: ScreenWorks screenshot of reduced FLIPR data showing group average responses to KCl dosing. Bottom panel: Nonlinear regression/sigmoidal dose response showing calculated Hillslope and EC50.
Results and Conclusions:
[1113] The Sha1/KChIP cell line responded progressively and with low variability to activation by increasing levels of isometrically-substituted KCl. The highest achievable concentration of KCl using this method is 60 mM [final]. The EC50, using a fixed top response, was calculated to be 30 mM KCl in this experiment.
MDC vs Axygen FLIPR 384 Tips
[1114] A comparison was made between FLIPR 384 tips supplied by Molecular Devices Corporation (MDC) and those supplied by Axygen Scientific (FIG. 26). Note: Axygen is a former supplier of FLIPR 384 tips to MDC. The cost to us in RTP for Axygen tips is 2/3 that of MDC tips.
[1115] FIG. 26: Comparison of MDC and Axygen FLIPR 384 tips. GraphPad Prism scatter plots showing maximum and minimum responses with resultant statistics of the Sha1/KChIP assay. Sha1/KChIP18-13 cells were plated at 7500 cells/well in 384-well assay plates and tested the following day. Culture medium was removed by flicking the plates and cells loaded with 20 ul 1× membrane potential dye per well for 0.5 hours at 25° C. A two-addition protocol was used. The first addition (5×) was 5 ul 2.5% DMSO in assay buffer (0.5% [final]) read for 180 sec, and the second (2×) was 25 ul 120 mM isometrically-substituted KCl in assay buffer (60 mM [final]) read for an additional 180 sec. Statistics were exported using the average of reads 180-200 and the maximum of reads 260-maximum allowed. Subtract bias was set at 1 and negative control correction was OFF. Left panel: Molecular Devices FLIPR 384 tips. Right panel: Axygen FLIPR 384 tips.
Results and Conclusions:
[1116] The performance of the Sha1/KChIP assay was identical using either MDC or Axygen tips. As the cost savings over the course of assay development and HTS was calculated to be considerable, all subsequent protocols used Axygen Scientific FLIPR 384 tips.
Stability of Assay Buffer and Other Reagents
[1117] An assessment was made of the stability of the reagents used in the Sha1/KChIP assay, namely, the first addition assay buffer/DMSO, reconstituted dye and activation buffer (FIG. 27).
[1118] FIG. 27: Reagent stability. Sha1/KChIP 18-13 cells were plated at 7500 cells/well in 384-well assay plates and tested the following day. Culture medium was removed by flicking the plates and cells loaded with 20 ul 1× membrane potential dye per well for 0.5 hours at 25° C. A two-addition protocol was used. The first addition (5×) was 5 ul 2.5% DMSO in assay buffer (0.5% [final]) read for 180 sec, and the second (2×) was 25 ul 120 mM isometrically-substituted KCl in assay buffer (60 mM [final]) read for an additional 180 sec. Statistics were exported using the average of reads 180-200 and the maximum of reads 260-maximum allowed. Subtract bias was set at 1 and negative control correction was OFF. All reagents for the Sha1/KChIP assay were prepared the day prior (with the exception of the dye), early in the workday and freshly for each experiment. The assay was run at time points 0, 4 and 8 hrs and overnight (O/N) with both previously- and freshly-prepared reagents.
Results and Conclusions:
[1119] The performance of the Sha1/KChIP assay exhibited only minor fluctuations during the course of the day. It was concluded that the reagents were stable for at least one full day. Subsequently, it was found that the assay and activation buffers were stable over the course of at least one week (data not shown).
FLIPR Tetra Pipetting Optimization
[1120] A number of experiments (data not shown) were carried out to examine the effect of changes in pipetting heights, speeds, and hold and expel volumes on assay statistics (Table 2).
Results and Conclusions:
[1121] The following table shows the settings that consistently gave the best results, as measured by Z' statistics:
TABLE-US-00003 TABLE 2 Pipetting optimization. First and second addition pipetting tip heights, speeds, and expel volumes that consistently resulted in Z` statistics of 0.5 or better. The were used during aspiration and no pauses or mixing applied to dispensing. initial vol 1st add vol height speed tip up expel 2nd add vol height speed tip up expel 20 ul 5x 5 ul 15 20 6 0 2x 25 ul 20 25 6 0 Note: No hold volumes were used during aspiration and no pauses or mixing applied to dispersing.
3-Day Minimum/Midpoint/Maximum Response
[1122] Sha1/KChIP 20 cells were examined for stability of response three times over the course of five days to assess the variability that could be expected during a screen (FIG. 28).
[1123] FIG. 28: Three-day minimum, midpoint and maximum statistics. GraphPad Prism scatterplots showing duplicate half-plate assay data for three days with resulting window, CV and Z' statistics. Sha1/KChIP 20 cells were plated at 7500 cells/well in 384-well assay plates and tested the following day. Culture medium was removed by flicking the plates and the cells loaded with 20 ul 1× membrane potential dye per well for 0.5+ hours at 25° C. A two-addition protocol was used. The first addition (5×) was 5 ul 2.5% DMSO in assay buffer (0.5% [final]) read for 180 sec, and the second (2×) was 25 ul 60 mM (left-half of plate) or 120 mM (right-half of plate) isometrically-substituted KCl in assay buffer (30 and 60 mM [final], respectively) read for an additional 180 sec. Statistics were exported using the average of reads 180-200 and the maximum of reads 260-maximum allowed. Subtract bias was set at 1 and negative control correction was OFF. Statistics were compiled as follows: Min-left half of n001 stat1 & right half of n002 stat1; Mid-left half n001 stat2 & left half n002 stat2; Max-right half n001 stat2 & right half n002 stat2. The data were minimally corrected for systematic artifacts
Results and Conclusions:
[1124] This assay performed well over the course of five days with a maximum Z' statistic range of 0.73 to 0.80, a mean of 0.77, and a standard deviation of 0.03. Note: Three-day single full-plate (three plates/day) experiments were also conducted (data not shown) with good results. The assay performed well over the course of six days with a maximum Z' statistic range of 0.69 to 0.74, a mean of 0.72, and a standard deviation of 0.03. Taken together, this assay could be expected to perform well over the course of a screening campaign.
3-Day Activator Dose Response Curves & EC50s
[1125] The stability of response of Sha1/KChIP 20 to isometrically-substituted KCl dosing was measured three times across six days (FIG. 29).
[1126] FIG. 29: Three-day KCl dose response curves and EC50s. Sha1/KChIP 20 cells were plated at 7500 cells/well in 384-well assay plates and tested the following day. Culture medium was removed by flicking the plates and the cells loaded with 20 ul 1× membrane potential dye per well for 0.5 hours at 25° C. A two-addition protocol was used. The first addition (5×) was 5 ul 2.5% DMSO in assay buffer (0.5% [final]) read for 180 sec, and the second addition was 25 ul 2× isometrically-substituted KCl at dose in assay buffer (0-60 mM [final]) read for an additional 180 sec. Statistics were exported using the average of reads 180-200 and the maximum of reads 260-maximum allowed. Subtract bias was set at 1 and negative control correction was OFF. Analysis is nonlinear regression, sigmoidal dose-response, top constant. Data are from single plates with 48 replicates for each dose.
Results and Conclusions:
[1127] The assay responded reasonably consistently to KCl dosing over three days with an EC50 range of 32 to 42 mM KCl, a mean of 36 mM, and a standard deviation of 5 mM.
3-Day Antagonist Dose Response Curves & IC50s
[1128] The presumptive Sha1/KChIP antagonist amiloride, identified during BIOMOL compound screening at 25 uM, was used to generate duplicate dose responses over three consecutive days (FIG. 30).
[1129] FIG. 30: Three-day amiloride dose responses. Sha1/KChIP 20 cells were plated at 7500 cells/well in 384-well assay plates and tested the following day. Culture medium was removed by flicking the plates and the cells loaded with 20 ul 1× membrane potential dye per well for 0.5 hours at 25° C. A two-addition protocol was used. The first addition (5×) was 5 ul 2.5% DMSO in assay buffer (0.5% [final]) read for 180 sec, and the second addition was 25 ul 2× isometrically-substituted KCl at dose in assay buffer (0-60 mM [final]) read for an additional 180 sec. Statistics were exported using the average of reads 180-200 and the maximum of reads 260-maximum allowed. Subtract bias was set at 1 and negative control correction was OFF. Analysis is nonlinear regression, sigmoidal dose-response. The data were fixed to an extrapolated point at 55 mM KCl to compensate for first addition artifacts seen as inhibition approached 100%. Data are from duplicate plates each day with 48 replicates/plate for each dose.
Results and Conclusions:
[1130] The assay responded consistently to inhibition by amiloride over three consecutive days with an IC50 range of 20 to 29 uM amiloride, a mean of 24 uM, and a standard deviation of 3 uM. It was concluded that this compound could reasonably be expected to perform well as an inhibition control for HTS.
Direct-to-Plate Assay
[1131] Experiments were undertaken to determine the feasibility of plating cells directly from liquid nitrogen storage to assay plates without any intervening cell culture (FIG. 31).
[1132] FIG. 31: Direct-to-plate assay. Frozen Sha1/KChIP 20 cells (2 ml×106/ml) were thawed, added to 82 ml complete culture medium, and plated in a 50 ul volume (1.2×104 cells/well) in 384-well plates for testing the following day. Culture medium was removed by flicking the plates and the cells loaded with 20 ul 1× membrane potential dye per well for 0.5 hours at 25° C. A two-addition protocol was used. The first addition (5×) was 5 ul 2.5% DMSO in assay buffer (0.5% [final]) read for 180 sec, and the second addition was 25 ul 60 mM or 120 mM isometrically-substituted KCl in assay buffer (30 mM or 60 mM [final], respectively) read for an additional 180 sec. Statistics were exported using the average of reads 180-200 and the maximum of reads 260-maximum allowed. Subtract bias was set at 1 and negative control correction was OFF.
[1133] This strategy is widely-employed throughout the lead discovery sector and often results in decreased assay variability, significant time savings, and reduced labor costs.
Results and Conclusions:
[1134] The Sha1/KChIP assay responded well when plated directly from liquid nitrogen storage. The Z' achieved from the maximum response was 0.73. While this strategy will not be employed during the current campaign, it will be considered during future screen developments.
BIOMOL Compound Screening
[1135] An Ion Channel Ligand Library (BIOMOL #2805), comprising 71 activators and inhibitors covering the major ion channel types, was twice measured against Sha1/KChIP 20 activity at 25 uM in 384-well four-pont mode (FIGS. 32 & 33).
[1136] FIG. 32: BIOMOL compounds--primary screening data. ScreenWorks screenshots showing primary FLIPR data for BIOMOL compound screening. Sha1/KChIP 20 cells were plated at 7500 cells/well in 384-well assay plates and screened the following day. Culture medium was removed by flicking the plates and the cells were loaded with 20 ul 1× membrane potential dye per well for 0.5 hours at 25° C. A two-addition protocol was used. The first addition was 5 ul 5× control or compound in 2.5% DMSO in assay buffer (0.5% [final]) read for 180 sec, and the second addition was 25 ul 2× control or 120 mM isometrically-substituted KCl in assay buffer (0-60 mM [final]) read for an additional 180 sec. Statistics were exported using the average of reads 180-200 and the maximum of reads 260-maximum allowed. Subtract bias was set at 1 and negative control correction was OFF. Control columns 1/2 and 23/24 are described starting on pg. 53 of this document. Inset: Screenshot of group averages for the control and compound wells highlighted in the primary data screen.
[1137] FIG. 33: BIOMOL compounds--reduced screening data. Assay plate views showing percent inhibition of Sha1/KChIP response by BIOMOL compounds. Experimental conditions are described in the previous figure legend.
Results and Conclusions:
[1138] Using an arbitrary cutoff of 55% inhibition, three compounds showed reproducible inhibitory activity against the Sha1/KChIP response. Amiloride (B8) is a known calcium channel blocker. Both NS-1619 (E7) and flufenamic acid (F6) are known to stimulate KCa2+ channel activities. It was unlikely that these compounds would prove to be direct inhibitors of Sha1, and patch clamp measurements bore this out (data not shown). For screening purposes, amiloride proved to be consistent in its action, and so was used for subsequent BIOMOL and BioFocus validation screening, and is recommended for HTS.
BioFocus Compound Screening
[1139] FIG. 34: Compound preparation protocol for BioFocus screening. Compound preparation was carried out on the FLIPR Tetra. Library plates at 2 mM were diluted 40× in assay buffer and dispensed into quadrants for 384-well screening.
[1140] The 3222 unique members of the BioFocus SoftFocus Ion Channel Libraries #1-4 (#SF101-04) were screened in 384-well four-point mode against Sha1/KChIP at 10 uM in a combined activator and antagonist screen. The same FLIPR protocol was used as for the BIOMOL screening and was carried out over four non-consecutive days. The following compound preparation protocol was used to prepare screening plates:
[1141] Briefly, Sha1-KChIP cells were seeded in 384-well plates at 7500 cells/well in 50 μl and incubated overnight at 37° C./5% CO2. The next day, culture medium was removed, 20 μl of 1×FMP dye was added, and the cell plate was incubated at 27° C. for 30 minutes. After incubation, the cell plate was placed into the Tetra and a two-addition protocol was used. The 1st addition was 5 μl of 5× compound (50 μM) with a three minute read. If the compound showed a response in the 1st addition, it was flagged as an activator. The 2nd addition was 25 μl of 2× activation buffer (120 mM isometric KCl substitution for NaCl) and read for an additional two minutes. A depression of the KCl response indicated the compound was an antagonist. All data were exported as statistics files. For the 1st addition, the average from reads 190-200 was used and for the 2nd addition, the maximum from 260-maximum allowed was used.
[1142] The activation and inhibition percentages were calculated by the following formulas and all results were calculated based on controls:
% Activation(1st addition statistic)=(test sample-μminA)/(μmaxA-μminA)×100
[1143] where μmaxA=mean 100% activation, and μminA=mean 0% activation.
% Inhibition(2nd addition statistic)=(μminI-test sample)/(μminI-μmaxI)×100
[1144] where μmaxI=mean 100% inhibition, and μminI=mean 0% inhibition.
[1145] The Z' statistics for activation and inhibition were calculated using the following formula:
Z'=1-((3σmax+3σmin)/(Iμmax-μminI))
BioFocus SoftFocus® Ion Channel Focused Libraries #1-4: 1° Screening Activator Hits
[1146] The percent activity relative to control is plotted as a histogram for the BioFocus ion channel library activator screen (FIG. 35).
[1147] FIG. 35: Sha1/KChIP FLIPR BioFocus 1° screening-activation. Distribution of actives on Sha1/KChIP.
[1148] The activity was based on the mean and standard deviation of the compound set (minus controls and outliers, such as fluorescent compounds). Because the mean and standard deviation were so low, we chose to use a 6a cut-off of 12% activation to select compounds for follow-up. As shown in Table 3, there were no compounds that showed activation over the 6a cut-off of 12%.
TABLE-US-00004 TABLE 3 Summary of Shal/KChIP activation. Summary table showing results from Shal/KChIP activator screening. Shal-KChIP Activation Total compounds 3222 Mean of Data set -0.3 SD of Data set 1.98 6-Sigma 12% Total Actives 0 % Hit Rate 0.00%
BioFocus SoftFocus® Ion Channel Focused Libraries #1-4: 1° Screening Antagonist Hits
[1149] The percent activity relative to control is plotted as a histogram for the BioFocus ion channel library antagonist screen. The activity was calculated based on the mean and standard deviation of the compound set (minus controls and outliers, such as fluorescent compounds). The distribution of the antagonist activity shows a normal distribution; however, it is centered at 10-15% inhibition, which we have seen previously with this compound set. We chose to use a 3σ cut-off of 29% inhibition to select the compounds for follow-up (Table 4). Because the compounds were tested in quadruplicate in the FLIPR screen and did not show strong inhibition at 10 μM, and because the amount of compound available is limiting, IC50s will not be performed on the FLIPR. All follow-up for antagonist hits will be performed on the QPatch. Table I details the antagonist actives with inhibition >/=29%.
TABLE-US-00005 TABLE 4 Summary of Shal/KChIP inhibition. Summary table showing results from Shal/KChIP inhibitor screening. Shal-KChIP Antagonist Total Compounds 3222 Mean of Data set 5.9 SD of Data set 825 3-Sigma 29% Total Actives 53 % Hit Rate 1.60%
Molecular Validation of Sha1/KChIP Cell Line
[1150] Experiments were undertaken to assess the integrity of the Sha1 and KChIP coding sequences incorporated into the Sha1/KChIP stable cell line (Table A1). The strategy employed was to isolate genomic DNA (gDNA) from Sha1/KChIP 20 and control cell lines and to use these DNAs as templates for informative PCRs (polymerase chain reactions). Amplification primers were selected to generate products across the 5' and 3' ends of the Sha1 and KChIP coding regions. Additional primers were chosen to verify the overall length of each coding region.
TABLE-US-00006 TABLE A1 Overview of primer pairs and PCR parameters used in molecular validation of Shal/KChIP cell line. ##STR00060## PCR products were generated across the 5' and 3' ends as well as the full-length coding sequences of Shal and KChIP. Primer names, target regions, Tms (annealing temperatures) and expected fragment sizes are indicated. The Shal/KChIP 20 gDNA prep is described, as is the 50 u1 reaction setup. The cycling parameters include a modified "touchdown" protocol to reduce the generation of non-specific products, and were designed to accommodate differing predicted optimal annealing temperatures.
Results and Conclusions:
[1151] All reactions yielded single products of the correct predicted size (FIG. 35A) with the exception of reaction #3 which produced a minor product of about 300 bp (FIG. 35A, lane 3). This product was also generated when amplifying control cell line gDNA (data not shown) and is presumed to be an artifact of the specific primer pair used. In conclusion, the coding sequences of Sha1 and KChIP appear to be intact using this kind of molecular examination.
[1152] FIG. 35A: PCR products from the reactions described in Table A1. Each lane contains 20 ul of each 50 ul amplification reaction electrophoresed on a 1% agarose gel and stained with ethidium bromide. M1: BenchTop 1 kb DNA Ladder (Promega), M2: BenchTop PCR Markers (Promega), 1: Sha1 5' end (180 bp), 2: Sha1 3' end (1.1 kb), 3: Sha1 full-length (2.1 kb), 4: KChIP 5' end (1.4 kb), 5: KChIP 3' end (260 bp), 6: KChIP full-length (1.3 kb).
The Following Examples are in Connection with the Shaker Channel and/or a Hyperkinetic Beta Subunit:
Molecular Cloning and Vector Map
[1153] The pTriEx/Shaker plasmid we started with contains a Kozak sequence upstream 5' additional N-terminal amino acids (MAISR). In order to clone the Shaker full-length cDNA into different expression vectors, the following strategy was performed:
[1154] 500 bp 5'-fragment amplification: two oligos have been designed for the amplification of the Shaker ATG codon together with a proper Kozak sequence without the additional 5' Nterminal amino acids.
TABLE-US-00007
[1154] Oligo SH-UPP, 5'-CCGGTACCATGGCCGCCGTTGCC-3' Oligo SH-LOW, 5'-CCGGTCTCCGTAGTCGGCCACC-3'
[1155] In bold KpnI restriction site; in bold, underlined the Kozak sequence, in underlined Shaker annealing sequence.
[1156] SH-LOW oligo is located downstream the unique SalI restriction site on Shaker sequence.
[1157] The PCR fragment has been cloned into pCR-Blunt vector and the sequence has been verified.
[1158] The pCR-Blunt/5'-PCR clone has been digested with KpnI (in SH-UPP oligo) and SalI (in Shaker sequence) and the 400 bp 5'-fragment was purified.
[1159] 1770 bp 3'-fragment cloning: pTriEx/Shaker plasmid was digested with SalI and EcoRI restriction enzymes and the 1770 bp fragment was purified.
[1160] Shaker wt cloning into pExSelect and pIRES2EGFP expression vectors via pcDNA3.1(+) vector: the 400 bp KpnI-SalI 5'-fragment and the 1770 bp SalI-EcoRI 3'-fragment obtained as described above have been cloned into the pcDNA3.1(+) vector. The NheI-EcoRI Shaker fragment of this construct has been cut and then cloned into the pExSelect and pIRES2EGFP previously digested with NheI and EcoRI.
[1161] The VectorNTi map of the final pExSelect_Shaker construct is shown in FIG. 36.
Cell Culture Conditions and Transfection
[1162] CHO-K1 cells were maintained in Dulbecco's MEM/Nutrient Mix F12 (1:1) (DME-F12 Euroclone catNECM0090L) supplemented with 1.6 mM Sodium Pyruvate, (100 mM solution, Euroclone cat. #ECM0542D), 13 mM Hepes (1M solution, Euroclone cat. #ECM0180D), 0.2% Sodium Bicarbonate (7.5% solution, Euroclone cat. #ECM0980D), 2 mM Ultraglutamine (BioWhittaker cat. #BE17-605E/U1), 10% FBS (Fetal Bovine Serum, Euroclone cat. #ECS0180L), and 1% Penicillin/Streptomycin (100× solution Euroclone cat. #B3001D).
[1163] Propagation conditions consist of seeding about 6×105 cells/T75 flask twice a week. Recovering about 10-13×106 cells/T75 flask.
[1164] Transfection was performed by electroporating 1.0×106 cells in presence of 10 μg of DNA at 300 mV and 950 μF. Cells were then selected with medium containing 2 mg/ml G418 or 1 mg/ml Zeocin for 10-15 days. After antibiotic selection, resistant clones were maintained in 1 mg/ml G418 (Calbiochem cat. #345812) or 0.5 mg/ml Zeocin (InvivoGen cat. #ant-zn-5) medium.
[1165] All the cell lines are plated in complete medium without antibiotics for the FLIPR experiments.
Cellular Membrane Voltage Measurement by FLIPR
[1166] In order to detect the membrane depolarization elicited by KCl injection, the Membrane Potential sensitive dye was used both for FLIPR384 and FLIPRTETRA experiments. Cells were analyzed in 384 clear-bottom black MPTs (MATRIX cat. #4324) by seeding 5000, 7500, 10000 cells/well 24 hrs before experiment. Plates were incubated with 40 μl/w of 0.625× membrane potential dye for 45-60 minutes at 37° C. or room temperature and measured at FLIPR instrument by injecting 10 μl/w of 5× antagonist (in the presence of 0.5% DMSO, as indicated) followed by 3-5 minutes fluorescence reading; then a second injection of 25 μl/w of 3× KCl in Standard Tyrode solution) was performed and fluorescence measured for further 3-4 minutes. In experiments with a single injection (agonist), plates were incubated with 20 μl/w of 1× dye and injected with 20 μl/w of 2× KCl in Standard Tyrode solution.
[1167] Kinetic data obtained from different well replicates were analyzed with FLIPR, Excel and Spotfire software, by calculating the Integral or Maximum-Minimum RFU values after the injection; the obtained means and standard deviations were utilized to create sigmoidal dose-response fits by GraphPad PRISM® or Spotfire software and to calculate EC50-IC50 values and Z' factors.
[1168] EC80 value was calculated according to the following formula:
ECx=(x/100-x)1/Hill Slope*EC50
[1169] For the calculation of the Z' factor the following formula was used:
Z ' = 1 - 3 * ( ST . DEV agonist + ST . DEV Tyrode MEAN agonist - MEAN Tyrode ##EQU00002##
Current Detection by Patch Clamp
Electrophysiological Recordings
[1170] Standard whole-cell voltage-clamp experiments were performed at room temperature. For data acquisition and further analysis, we used the EPC10 digitally controlled amplifier in combination with PATCHMASTER software (HEKA Electronics, Lambrect, Germany). The EPC10 provides automatic subtraction of capacitance and leakage currents by mean of prepulse. The data were filtered at 66.7 KHz (-3 dB, 8-pole Bessel lowpass) and digitized at 5 μs per point. The input resistance of the patch pipettes was 2.0-4.0 MΩ and the capacitances of the cells were 15.3±2.1 pF (n=45); the residual series resistances (after up to 80% compensation) were 4.2±0.4 MΩ.
[1171] Correction for liquid junction potential was routinely applied. Membrane potential was clamped at -100 mV and currents were elicited by 50 ms depolarization pulses (0.1 Hz) from -60 mV to +100 mV (or +60 mV).
Cell Culture
[1172] For electrophysiology experiments, CHO-K1/DmShaker cells have been treated and maintained in culture with the standard protocol described above. 24 hrs (or four to six hrs in the second limiting dilution tests) before experiments CHO-K1/DmShaker cells were seeded onto poly-D-lysine coated glasses (200000 cells each) and placed in six well plates in antibiotic free medium. Immediately before experiments coated glasses, with seeded cells, have been washed five times with patch clamp extracellular solution and then put into the recording chamber.
Solutions
[1173] The pipette solution contained (mM): KMeSO3 128, HEPES 10, EGTA 12, MgCl2 3, CaCl2 0,7, K2ATP 5, pH 7.2 with KOH.
[1174] The bath solution contained (mM): NaCl 145, KCl 5, MgCl2 1, CaCl2 2, HEPES 10, Glucose 10, pH 7.4 with NaOH.
Ligand Storage
[1175] DMSO (Dimethyl sulfoxide SIGMA cat. #D-5879) was purchased from SIGMA®.
[1176] KCl was purchased from SIGMA® and stock solution was prepared 3 M in water.
[1177] TEA was purchased from SIGMA® and stock solution was prepared 1M in water.
[1178] Working solutions are prepared in the Standard Tyrode buffer (pH 7.4):
[1179] NaCl 130 mM, KCl 5 mM, CaCl2-2H2O 2 mM, MgCl2 1 mM, NaHCO3 5 mM, HEPES 20 mM.
Software
[1180] Data were analyzed using Excel, GraphPad Prism 4, FLIPR384 Control Software, ScreenWorks 1.2.0.
Stable Cell Line Generation
[1181] CHO-K1 cells have been stably transfected with pExSelect_Shaker or pExSelect vector alone (as mock control). 48 hrs after transfection cells have been cultured in complete medium supplemented with 2 mg/ml G418 to select a resistant pool.
[1182] Antibiotic resistant DmShaker transfected cells (not FACSorted) have been further transfected with the H-kvβ subunit A or C subtype vectors received from BASF and 48 hrs later cells put on selection with 1 mg/ml Zeocin.
First Limiting Dilution Clone Selection
[1183] In order to obtain a pure Shaker and H-kvβ clone, a first limiting dilution step has been performed by diluting stable mock or Shaker transfected pools in 96 wp at a cell density of 1 cell/well (5×96 wp mock and 5×96 wp Shaker plus H-kvβ for each subunit). Confluent clones were replicated into clear bottom 384 wp and analyzed after 24 hrs at FLIPR384 by injecting 100 mM KCl. As shown in FIG. 37 the mock clones showed an hyperpolarization upon KCl injection while some of the Shaker and Hkvβ both A and C clones displayed a KCl response recorded as a sustained depolarization, as shown in FIG. 38.
[1184] FIG. 37. Mock I limiting dilution plate selection at FLIPR384: example of one plate
[1185] FIG. 38. Shaker+Hkvβ A or C subunit I limiting dilution clone selection at FLIPR384
[1186] Data were analyzed using the total integral RFU values after activator injection. On the basis of this data analysis, two mock clones and six clones each from both Shaker plus A or C subtype have been selected for re-test in a counted cells experiment: 10000 c/w have been plated and 24 hrs later a KCl dose-response at FLIPR384 has been performed. The resulting best clones are shown in FIG. 39.
[1187] FIG. 39. I limiting dilution clone re-test as counted celss at FLIPR384
[1188] Protocol: 10000 c/w-24 h; MEM discarded; 45' incubation at 37° C. with 40 μl of blue MP dye according to the described procedure; 20 μl/w KCl injection at FLIPR384 (3× Tyrode solution).
Clone Stability at Different Passages in Culture and after Freezing/Thawing
[1189] A-3A10 has been selected as the best responding clone and maintained in culture for more than two months. A-3A10 has been analyzed at FLIPR384 for KCl response stability at different cell passages and after freezing/thawing as shown in FIGS. 40 and 41.
[1190] FIG. 40. A-3A10 signal stability at different cell passages: 10000 c/w-24 h; MEM discarded; 45' incubation at 37° C. with 40 μl of blue MP dye according the described procedure; 10 μl/w 0.5% DMSO injection as 5× tyrode solutions; 3' later, 25 μl/w KCl injection at FLIPR384 (3× tyrode solution) 1.5, 3.7, 7.5, 15, 30, 60, 90, 120 mM
[1191] FIG. 41. A-3A10 signal stability after freezing and thawing: 10000 c/w-24 h; MEM discarded; 45' incubation. at 37° C. with 40 μl of blue MP dye according to the described procedure; 10 μl/w 0.5% DMSO injection 5× Tyrode solutions; 3' later, 25 μl/w KCl injection at FLIPR384 (3× Tyrode solutions) 1.5, 3.7, 7.5, 15, 30, 60, 90, 120 mM
TEA Effect on A-3A10 Clone
[1192] TEA effect has been analyzed on A-3A10 clone by KCl stimulation upon 30, 60 or 90 mM TEA pre-injection by FLIPR 384. TEA blocking effect is visible in particular on 30 mM KCl stimulation as shown in FIG. 42.
[1193] FIG. 42. TEA effect on A-3A10 clone: 10000 c/w-24 h; MEM discarded; 45' incubation at 37° C. with 40 μl of blue MP dye according the described procedure; 10 μl/w 0.5% DMSO inj. in the presence of 30, 60 or 90 mM TEA 5× Tyrode solutions; 3' later, 25 μl/w KCl injection at FLIPR384 (3× tyrode solutions) 1.5, 3.7, 7.5, 15, 30, 60, 90, 120 mM
KCl Hypertonic or Isotonic Solution Analysis
[1194] Both KCl hypertonic or isotonic solutions have been analyzed on A-3A10 clone. Hypertonic solutions have been prepared starting from standard Tyrode buffer (135 mM NaCl+KCl) by adding the required volume of KCl stock solution (standard protocolIsotonic solutions have been prepared starting from "Tyrode base" (0 M NaCl+KCl) and keeping NaCl+KCl salts concentration at 135 mM. No differences have been observed in the response of the tested clone both as RFU and as kinetic shape, when using the two solutions as shown in FIG. 43. So all validation experiments were performed in standard Tyrode.
[1195] FIG. 43. Hypertonic and isotonic solutions analysis: 10000 c/w-24 h; MEM discarded; 45' inc. at 37° C. with 40 μl of blue MP dye according the described procedure; 10 μl/w 0.5% DMSO inj. 5× tyrode solutions; 3' after, 25 μl/w KCl inj at FLIPR384 (3× tyrode solutions) 1.5, 3.7, 7.5, 15, 30, 60, 90, 120 mM
Second Limiting Dilution Clone Selection
[1196] The Shaker/H-kvβ A subunit best clone, A-3A10, has been put in second limiting dilution in 3×96 wp at a cell density of 1 cell/well. 30 clones have been picked-up and grown for testing. Ten clones have been tested first as counted cells using the standard loading and experimental protocols. KCl response of the best clones is shown in FIG. 44.
[1197] FIG. 44. A-3A10 II limiting dilution clone selection at FLIPR384
[1198] Example of best clones: 10000 c/w-24 h; MEM discarded; 45' incubation at 37° C. with 40 μl of blue MP dye according the described procedure; 10 μl/w 0.5% DMSO injection 5× Tyrode solutions; 3' later, 25 μl/w KCl inj at FLIPR384 (3× Tyrode solutions) 1.5, 3.7, 7.5, 15, 30, 60, 90, 120 mM
[1199] Two clones, n° 1 and n° 9, have been selected as the best responsive clones for further analysis at FLIPRTETRA. 10000, 7500, 5000 and 2500 c/w have been plated 24 hrs before experiment and KCl dose-response analysis has been performed. Data obtained are shown in FIG. 45
[1200] FIG. 45. n° 1 and n° 9 II limiting dilution clones analyzed at FLIPRTETRA: 10000 c/w-24 h; MEM discarded; 45' incubation at 37° C. with 40 μl of blue MP dye according the described procedure; 10 μl/w 0.5% DMSO injection 5× Tyrode solutions; 3' later, 25 μl/w KCl injection at FLIPRTETRA (3× Tyrode solutions) 1.5, 3.7, 7.5, 15, 30, 60, 90, 120 mM
Final Clone Optimization
[1201] The Shaker n° 1 clone has been chosen for further characterization and final clone optimization.
Cell Density Dependency
[1202] Shaker n° 1 clone has been seeded 10000, 7500 and 5000 c/w 24 h before experiment in order to determine the optimal cell density. The day of experiment a KCl dose-response has been injected at FLIPRTETRA and the EC50 has been calculated. The results are shown in FIG. 46.
[1203] FIG. 46. Cell density dependency, KCl dose-response: 10000; 7500, 5000 c/w-24 h; MEM discarded; 45' incubation at RT with 40 μl of blue MP dye according the described procedure; 10 μl/w Tyrode injection; 3' later, 25 μl/w KCl injection at FLIPRTETRA (3× Tyrode solutions) 1.5, 3.7, 7.5, 15, 30, 60, 90, 120 mM.
[1204] To draw the curve the Max-Min value after KCl injection has been considered.
DMSO Sensitivity
[1205] In order to determine if DMSO causes any effect on the activator response, clone n° 1 has been plated at the cell density of 10000, 7500 or 5000 c/w and analyzed at FLIPRTETRA 24 h later, by injecting KCl dose-response, after a instrument pre-injection of 0.5-1-1.5-3% DMSO.
[1206] As shown in FIG. 47-48-49 DMSO concentrations up to 1.5% have no significant effect on the KCl response; 3% DMSO gives rise to a decrease in KCl dependent response.
[1207] FIG. 47 DMSO sensitivity: 10000 c/w-24 h; MEM discarded; 45' incubation at RT with 40 μl of blue MP dye according the described procedure; 10 μl/w 0.5, 1, 1.5, 3% DMSO injection 5× Tyrode solutions; 3' after, 25 μl/w KCl inj at FLIPRTETRA (3× tyrode solutions) 1.5, 3.7, 7.5, 15, 30, 60, 90, 120 mM.
[1208] To draw the curve the Max-Min value after KCl injection has been considered.
[1209] FIG. 48 DMSO sensitivity: 7500 c/w-24 h; MEM discarded; 45' incubation at RT with 40 μl of blue MP dye according the described procedure; 10 μl/w 0.5, 1, 1.5, 3% DMSO injection 5× Tyrode solutions; 3' later, 25 μl/w KCl inj at FLIPRTETRA (3× Tyrode solutions) 1.5, 3.7, 7.5, 15, 30, 60, 90, 120 mM.
[1210] To draw the curve the Max-Min value after KCl injection has been considered.
[1211] FIG. 49 DMSO sensitivity: 5000 c/w-24 h; MEM discarded; 45' inc.ubation at RT with 40 μl of blue MP dye according the described procedure; 10 μl/w 0.5, 1, 1.5, 3% DMSO injetion 5× Tyrode solutions; 3' later, 25 μl/w KCl injection at FLPIRTETRA (3× Tyrode solutions) 1.5, 3.7, 7.5, 15, 30, 60, 90, 120 mM.
[1212] To draw the curve the Max-Min value after KCl injection has been considered.
Clone Stability after Freezing/Thawing
[1213] Clone n° 1 has been analyzed after culturing (p 6) and freezing/thawing: cells have been plated at the cell density of 10000, 7500 or 5000 c/w and analyzed at FLIPRTETRA after 24 h by injecting KCl dose-response in the presence of 0.5% DMSO.
[1214] The results are shown in FIG. 50.
[1215] FIG. 50 Clone stability in culture and after freezing/thawing: 10000, 7500, 5000 c/w-24 h; MEM discarded; 45' incubation at RT with 40 μl of blue MP dye according the described procedure; 10 μl/w 0.5% DMSO injection 5× Tyrode solutions; 3' later, 25 μl/w KCl inj at FLPIRTETRA (3× Tyrode solutions) 1.5, 3.7, 7.5, 15, 30, 60, 90, 120 mM.
[1216] To draw the curve the Max-Min value after KCl injection has been considered.
EC50 Stability on Three Separate Days
[1217] In order to verify the KCl response stability throughout different days of experiment, the final clone has been tested at FLIPR384 in three separate days by injecting a KCl dose-response. As shown in FIG. 51.
[1218] FIG. 51. EC50 reproducibility in three different days
[1219] Protocol: 10000 c/w-24 h; MEM discarded; 30' incubation at 37° C. with 40 μl of blue MP dye according the described procedure; 10 μl/w Tyrode 0.5% DMSO injection at FLIPR384; read for 2'; 25 μl/w KCl injection at FLIPR384 (3× Tyrode solutions). Values in the graph refer to the Max-Min after KCl injection.
Patch Clamp Analysis
[1220] The two best clones coming from the first limiting dilution were tested through whole cell patch clamp technique. As shown (FIG. 52 a and b) the application of depolarization pulses to up+100 mV induced a Dm-Shaker current with a typical fast activation and fast inactivation profile. In some experiments, a TTX-sensitive inward current was present as shown in FIG. 52 b.
[1221] For each clone six experiments were performed and very promising results were obtained: 100% of the cells of clone 3a10 showed a Dm-Shaker current profile with a mean current density (at +60 mV) of 56.3±36 pA/pF, whereas five cells showed the potassium current for the clone 4d1 with a mean current densities of 13.4±18 pA/pF
[1222] As the best electrophysiology results were obtained from the Dm-Shaker A-subtype clone, it was decided to put into limiting dilution only the cell transfected with the Shaker channel plus the H-kvβ A subunit. In the meanwhile the activity of the 3a10 clone was routinely checked every two weeks; moreover the clone expression stability after cells thawing was also checked.
[1223] In FIG. 53 a), b) and c), we can see that pulses of depolarization up to +60 mV (b) or to +100 mV (a and c) induced the activation of Dm-Shaker. In particular the stability of the functional channel expression was still very high when cells were maintained in culture at least up to five-six weeks (FIG. 53a) and after cells thawing (FIG. 53c). In this experiments 83.3% and 100% of the cells respectively showed Dm-Shaker current (n=6 and 7).
[1224] After sub-culturing clone 3a10 for more than two months (passages 17-20), the expression of the channel was decreased and the cells showing Dm-Shaker current were 50% (n=8). In order to have kinetic informations about the voltage dependence of the activity of Dm-Shaker, the I-V relationship was plotted (FIG. 54). I-V plot was constructed by measuring peak currents and plotting the normalized values against membrane potential (n=8±SD).
[1225] Clone 1 coming from the second limiting dilution was then used for electrophysiology analysis and two compounds, were also tested on the selected clone. The two compounds affect the Dm-Shaker activity.
Screening Protocol
[1226] In the final assay adaptation for screening, several modifications of the protocols were done. The most substantial of these changes are:
[1227] Implementation of an automated procedure for dye loading
[1228] 50 mM KCl: final concentration for screening (1:3 dilution of Activation buffer)
[1229] Automated process
[1230] Where the activation buffer was prepared as follows:
[1231] 150 mM KCl, 2 mM CaCl2*2H2O, 1 mM MgCl2, 5 mM NaHCO3, 20 mM HEPES, pH 7.4
[1232] The composition of the activation buffer represents a solution that is as close as possible to the physiological conditions in terms of osmolarity. That is the reason why it was decided to perform the screening adaptation and the full screening by using this buffer instead of standard tyrode.
Final FLIPR Protocol for Screening
[1233] The finalized FLIPR protocol has this setup:
[1234] Source Plate 1: Compound dilution plate
[1235] Source Plate 2: Activator plate
[1236] Read Position: Assay plate
[1237] Source Plate 3/Tips: not used (Tip box)
[1238] Filters: Excitation: 510-545; Emission: 565-625
[1239] Read settings (typical): Gain 60. Exp. Time 0.6; Excitation 60
[1240] Wash Buffer A: water
[1241] Wash Buffer B: water with 2.5% DMSO
[1242] The protocol (which is represented graphically above) includes these steps:
[1243] Mix the compound dilution plate
[1244] Transfer 10 μL from compound dilution plate to the assay plate
[1245] Start read 3.0 minutes
[1246] After 30 seconds, mix assay wells
[1247] Wash tips (while reading)
[1248] Transfer 25 μL from activator plate to the assay plate, mix immediately
[1249] Read 4.0 minutes
[1250] Wash tips (while reading)
[1251] The only substantial change in physical processing of the plate in the automated procedure versus the manual procedure is in the dye loading. In the manual process, this is accomplished by first dumping the medium out of the wells by "flicking" the liquid into a sink, and then aliquoting dye into the wells.
[1252] In the automated procedure, the dye loading is accomplished by the automated 384-well pipettor of our screening system. In order to remove the culture medium without disturbing the cell monolayer, we perform a cycle of aspiration/buffer dispense/aspiration in order to accomplish a "washing" of the well. In effect, our pipetting procedure resulted in a residual of 5% of the culture medium in the well with the dye. The final dye loading step involves removing the wash buffer, leaving 10 μL in the well, then adding 30 μL of 0.666× dye, for a final of 40 μL of 0.5× dye. We found that this resulted in an identical (or even better) performance of the assay as compared to manual emptying of the wells.
[1253] For the running of the automated process, an optimized schedule is compute to maximize plate throughput. An example of the optimized schedule for many plates is shown in FIG. 54. The throughput of this scheduled process is one plate each 13 minutes. This allows us to process 50-60 plates each day.
Overview of Automated Scheduled Process
[1254] The steps presented represent the processing of a single experiment. The scheduler system takes care of interlacing multiple assays in order to optimize throughout.
[1255] An overview of the automated scheduled process is depicted in FIG. 86.
The Following Examples are in Connection with the G-Protein Coupled Receptor:
[1256] Octopamine receptors can modulate their action through cyclic AMP production or intracellular calcium release, dependent on the receptor isoform. Although 0a2 endogenously signals though cAMP, we were able to force coupling to calcium via transfection of the receptor into a cell line expressing the promiscuous G-alpha-16-protein, which leads to calcium release upon its activation. The calcium release is measurable by fluorescent calcium sensing dyes (in this case Fluo-4). (FIG. 55A)
Cell Biology
Cell Line Construction
[1257] The OctR-pcDNA3.1(+)_zeo expression vector was created. This construct was used as a template for the creation of the fluorescently tagged pcDNA3.1-OctR-GFP plasmid. The pAcGFP sequence was inserted into the untagged OctR expression vector using a mega-primer strategy. The first step of this strategy was to use PCR to generate a gene fragment from the pAcGFP-N1-Asc1 plasmid, using primers specific for the pAcGFP vector with an additional overhang of approximately 20 base pairs specific to the OctR-pcDNA3.1 vector.
[1258] The primers used in this step were 6919-For (5' ctgcatcccctgtacaccaacggcgcgcccatggtgagcaag 3') and 6919-Rev2 (5' ggatatctgcagaattcgcccttcacttgtacagctcatccatgc 3'). This 771 base-pair gene fragment was then purified from an agarose gel, concentration determined, and 125 ng of the purified PCR product was used as a mega-primer for a second PCR reaction, using the OctR-pcDNA3.1(+)_neo expression vector as the template and the QuickChange XL site-directed mutagenesis kit protocol. This PCR reaction generated pcDNA3.1-OctR-pAcGFP, which is the CG6919 dmOa2 octopamine receptor sequence with the AcGFP sequence attached to the C-terminus of the gene. The coding region of the construct was sequenced to confirm double-stranded sequence integrity. (FIG. 55B)
Transient Expression in Mammalian CHO Cells Coexpressing Gquadrature16
[1259] The untagged and GFP-tagged versions of OctR, which natively couples to cAMP, were transiently expressed in CHO cells stably expressing the G-alpha-16 promiscuous G protein, which signals through calcium. This allowed activation of the receptor to be measured by calcium-sensing fluorescent dyes.
[1260] In FIG. 55A, various amounts of untagged OctR-pcDNA3.1 DNA were transfected into CHO cells (6-well dish, 300,000 cells/well) and tested for function at 48 hours using Fluo-4 dye on the Discovery microscope. The graph shown below represents an average of all single-cell readings from cells expressing the cyan vector. It is assumed that the majority of cells expressing the cyan vector also express OctR. This experiment demonstrated that the OctR-pcDNA3.1 expression vector is fully functional, that the OctR receptor will couple to G-alpha16, and that a large assay window exists above control-transfected cells upon addition of a maximal dose of octopamine. In addition, it demonstrated that OctR is not toxic to the CHO cells, and increasing amounts of DNA yield greater expression and greater signals.
[1261] In FIG. 55B, a similar experiment is shown with the GFP-tagged OctR expression vector. Once again, the experiment demonstrates that the construct is fully functional and that the assay is capable of measuring calcium release specifically in response to stimulation with octopamine. FIG. 55C shows that the octopamine receptor is also activated by tyramine. Dose curves and competition studies were not performed, but preliminary data and published reports suggest that tyramine is only slightly less efficacious on the OctR than octopamine and has similar potency.
[1262] FIG. 55. Calcium-sensing Fluo-4 fluorescent dye response to octopamine or tyramine stimulation in CHO cells stably expressing G-alpha-16 and transiently expressing increasing amounts of untagged or GFP-tagged OctR-pcDNA3.1. Cells co-transfected with pAmCyan vector as a marker of transfected cells were stimulated with a maximal dose of octopamine or sub-maximal dose of tyramine. Well averages of single-cell response measured on the Discovery microscope are graphed above.
[1263] Stable Line Generation in Mammalian CHO Cells Coexpressing G-Alpha-16
[1264] A line of CHO cells stably co-expressing the pcDNA3(+)-OctR-AcGFP and G-alpha-16 was created. CHO cells stably expressing the G(16 construct (passage 20) were transiently transfected with 1.5 ug of pcDNA3(+)-OctR-AcGFP, the optimal amount of DNA as determined in FIG. 55. Forty-eight hours after transfection, the cells (already maintained under 4 ug/ml hygromycin selection) were put under zeocin selection (300 ug/ml). Cells were grown and passaged under selection for three weeks, then single-cell flow cytometry sorting by fluorescence was completed at Duke University to create monoclonal stable cell lines. FIG. 56 shows an experiment completed just prior to cell-sorting, demonstrating that about 10% of the stable pool population responded to octopamine. At the time of sorting, the G-alpha-16 CHO line was at passage 22.
[1265] FIG. 56. Following three weeks of zeocin selection, a stable pool of zeocin-resistant CHO-- G-alpha-16 cells exists. Approximately 10% of the stable pool responded to octopamine at measurable levels. This pool was subsequently sorted into single-cell monoclonal colonies.
[1266] Monoclonal colonies were visually assessed for the expression of green fluorescent protein, and therefore by assumption, the fused OctR receptor. Colonies positive for green fluorescent protein expression were expanded and tested for response to octopamine.
[1267] Approximately 30 monoclonal lines positive for green fluorescent protein expression were tested for response to octopamine on the FLIPR Tetra (FIG. 57). All clones were stimulated by UTP as the positive control and a measure of the maximal calcium response, two doses of octopamine, and by buffer for negative control. Cells were seeded at a density of 20,000 cells/well. Of the approximately 30 lines, only 2 clonal lines (#13 and #30) demonstrated a measurable response to octopamine (FIG. 58). These two lines were selected for further testing.
[1268] FIG. 57. Screening of all GFP-positive monoclonal cell lines for response to octopamine. All lines responded to the positive control (10 μM UTP) and no response to the negative control (buffer addition), but only clones #13 and #30 had a measurable response to a maximal dose of octopamine
[1269] FIG. 58. Response of clones #13 and #30 on FLIPR Tetra. On each graph, top two lines are in response to maximal dose of UTP, followed in descending order by 10 uM octopamine, 50 nM octopamine, and buffer control.
[1270] Stable Lines #13 and #30 Show Best Response to Octopamine
[1271] After evaluation of approximately 30 GFP-positive monoclonal lines, clone #13 and #30 were selected for further analysis due to their measurable response to octopamine. The uniformity of each of these clonal lines was tested, by assessing single-cell response to octopamine. Clone #13 was assessed using Fura-2 fluorescent dye on the calcium imaging system, and Clone #30 was examined using Fluo-4 fluorescent dye on the Discovery microscope. FIG. 59 shows the results of these tests. Both clones appear to be comprised completely of cells expressing the OctR, as shown by their response to octopamine. However, a noticeable delineation exists between strong responders and weak responders. This may be due to a difference in receptor expression or in Gquadrature16 levels of expression from cell to cell. These experiments were performed following passage 7 after flow-sorting into monoclonal lines.
[1272] FIG. 59. Single-cell response to octopamine for clones #13 and #30. Clone #13 (A) was assessed by Fura-2 fluorescent dye on the calcium imaging system, and Clone #30 (B) was assessed by Fluo-4 fluorescent dye on the Discovery microscope.
[1273] Do to a shrinking of the signal over time in the FLIPR, further subcloning of both lines #13 and #30 were conducted. Single-cell flow cytometry sorting by fluorescence was completed at Duke University to create further subcloned monoclonal stable cell lines coexpressing the OctR-GFP and G(16. Single cells with medium or high expression of green fluorescent protein (and by assumption the fused OctR) were sorted into 96-well dishes and put under selection of hygromycin and zeocin.
Stable Cell Line Generation and Clone Selection
[1274] Over 50 subclones from the original #30 clonal line were evaluated on the FLIPR for several weeks looking for a maximum octopamine response above baseline. Clone 55 was chosen to move forward into assay development based on a good dynamic range in the FLIPR (FIG. 60: OCTR clone 55 selection) and over 82% homogeneity in the Discovery microscope (FIG. 61: Homogeneity of OCTR clone 55).
[1275] FIG. 60. OCTR clone 55 selection. OCTR clones were plated at 20K/well into black 96-well plates and assayed the next day. Culture medium was removed and cells were loaded with 50 ul of 2 μM Fluo-4 with probenecid per well for 1 hour at 25° C. Dye was removed and 50 μl of buffer with probenecid added. A single addition was performed in the Tetra. 50 μL of buffer or (2×) 200 μM Octopamine was added to cells while 10 μM UTP was used as a control for maximum intracellular calcium signal.
[1276] FIG. 61. Homogeneity of OCTR clone 55. OCTR cells were plated at 6K/well into a black 96-well plate and assayed the next day. Culture medium was removed and cells loaded with 50 ul Fluo-4 per well for 1 hour at 25° C. Dye was removed and 541 of buffer with probenecid added. 50 μl of 10 μM Octopamine or buffer was added and signal was recorded using the Discovery microscope. Well averages of single-cell response measured on the Discovery microscope are graphed above.
Pharmacology
[1277] Clone 55 was assessed for correct pharmacology and compared to published results based on a cAMP readout. As shown in FIGS. 62A&B, the agonists and antagonists showed the same rank order of potency as the published data, where in the case of the agonists, naphazoline>octopamine>amitraz>clonidine>tolazoline (Evans P, et al. 2005. Invertebrate Neuroscience 5: 111-118). In FIG. 62C, these same compounds had no effect on the parental cell line, showing the specificity of the ligands to the octopamine receptor.
[1278] FIG. 62. Cells were plated at 10K/well in 384 well plates and allowed to incubate overnight at 370 C. The cells were assayed 18-24 hours after seeding. Media was removed and cells were dye loaded for 60 minutes with 2 μM Fluo-4. After 1 hour, dye was removed and 20 μl of buffer added to the plate and placed into FLIPR. The 1st addition was antagonist dose response curves and the 2nd addition was agonist dose response curves. Antagonists were challenged with 100 nM Octopamine. In addition, these compounds were tested in the parental cell line CHO-' Galpha16.
Assay Development
HTS Screening Strategy
[1279] This assay uses two fluid additions to permit the detection of activators and inhibitors in a single experiment. In screening, test compounds will be added in the first addition and allowed to incubate for three minutes. The activator octopamine will then be introduced in the second addition at an EC80 concentration and the fluorescence read for two minutes. Controls will be run for both additions. An increase in fluorescence above baseline in the first addition will indicate a possible activator and a reduced response or no increase in the second addition may indicate a possible inhibitor. FIG. 55C
Basic Test Protocol
[1280] Cells were plated at 10,000 cells/well in 50 μl into 384-well black TC plates and allowed to incubate overnight at 37° C./5% CO2. The cells were assayed 18-24 hours after seeding. Culture medium was removed by flicking and cells were dye loaded for 60 minutes with 20 ul of 2 μM Fluo-4 in assay buffer plus probenecid at 25° C. After one hour dye was removed by flicking and 20 μL of assay buffer was added, wait 5 min prior to placing into the FLIPR and run using a two-addition protocol. The first addition (20 ul, 2×) was 0.5% DMSO final in assay buffer. The second addition (20 ul, 3×) was either assay buffer or 100 nM octopamine final.
Cell Plating Method
[1281] Experiments were conducted to examine manual vs. multidrop dispensing of cells into assay plates (data not shown). The data showed that the multidrop plating was more reproducible than hand plating. There are two critical points to remember when plating cells with the multidrop:
[1282] 1. Cells need to stay in suspension during cell plating. We use a rotating plate or a rotomixer with a holder attached, where we can place a 500 ml conical bottom tube containing the cells.
[1283] 2. Do not leave the cells sitting in multidrop tubing between plates. The cells will settle in the tubing, which will result in streaking patterns in the data. If the cells sit, you will need to empty the tubing and reprime.
DMSO Tolerance Study
[1284] Full octopamine dose response curves were performed in the 1st and 2nd additions to test the sensitivity of this assay to varying concentrations of DMSO. As shown in FIG. 63A, there was a significant shift in the EC50 for octopamine at 2% DMSO (final). For the 2nd addition (FIG. 63B), final DMSO concentrations greater than 0.67% showed a significant shift in the EC50. For this assay, we will be using final concentrations of 0.5% DMSO in the 1st addition and 0.33% in the second addition, which will have a minimal effect on the octopamine EC50.
[1285] FIG. 63: Octopamine EC50 curves in different DMSO concentrations in 1st and 2nd additions. OctR cells were plated at 10K cells/well and assayed the following day. Culture medium was removed and cells loaded with 20 ul of 2 μM Fluo-4 plus probenecid per well for 1 hour at 25° C. After one hour, dye was removed and 200 of buffer plus probenecid was added to plate and placed in Tetra. A two-addition protocol was used. The first addition (2×) was either 20 ul indicated % DMSO+octopamine DRC (FIG. 63A) or 20 ul indicated % DMSO in assay buffer (FIG. 63B) then read for 180 sec. The second addition, for FIG. 63B, was (2×) 200 of octopamine DRC and read for an additional 180 sec. Statistics were calculated using the maximum of reads 20-180 (1st addition) and the maximum of reads 200-360 (2nd addition).
Cell Density Optimization
[1286] Plating densities at 7K, 10K, and 14K per well were examined for variability and Z' statistics and data are shown in FIG. 64. All densities tested performed resulted in excellent Z' statistics. It was decided to move forward with 10K/well based on the low variability and cost reduction.
[1287] FIG. 64: Cell density optimization. FLIPR data showing maximum and minimum statistics for full plates at the indicated densities with resulting CV and Z' statistics. Platings below 4K cells/well did not yield a confluent monolayer the next day and were not tested. OCTR cells were plated by-hand at the appropriate densities and assayed the following day. Culture medium was removed and cells loaded with 20 ul/well of 2 μM Fluo-4 plus probenecid and incubated for 1 hour at 25° C. After one hour, dye was removed and 20 μl/well of buffer plus probenecid was added and placed in Tetra. A two-addition protocol was used. The first addition (2×) was 20 ul 1% DMSO in assay buffer (0.5% [final]) read for 180 sec, and the second (3×) was 20 ul 300 nM
[1288] Octopamine in assay buffer (100 nM [final]) read for an additional 180 sec. The statistics were calculated using the maximum of reads 20-180 (minimum response) and the maximum of reads 200-360 (maximum response).
Dye Concentration
[1289] An experiment comparing the response of cells loaded for one hour with 1 μM, 2 μM and 4 μM Fluo-4 dye (Notebook 1052125 #1 p. 102) is shown in FIG. 65. All concentrations of Fluo-4 tested resulted in acceptable window size and Z' statistics. It was decided to move forward with 2 μM Fluo-4 based on the good dynamic range and significant cost reduction.
[1290] FIG. 65: Dye concentration. Maximum statistics showing the effect of dye concentration on window size. OCTR cells were plated at 10K cells/well and assayed the following day. Culture medium was removed and cells loaded with 20 ul of 1 μM, 2 μM or 4 μM Fluo-4 per well for 1 hour at 25° C. After one hour, dye was removed and 20 μl of buffer was added to plate and placed in Tetra. A two-addition protocol was used. The first addition (2×) was 20 ul 1% DMSO in assay buffer (0.5% [final]) read for 180 sec, and the second (3×) was 20 ul 300 nM octopamine in assay buffer (100 nM [final]) read for an additional 180 sec. The statistics were calculated using the maximum of reads 20-180 (minimum response) and the maximum of reads 200-360 (maximum response). (not shown Z' for 1 μM Fluo-4=0.73, 2 μM=0.70, and 4 μM=0.80)
Dye Loading Time
[1291] The effect of dye loading time on variability and Z' statistics was examined in FIG. 66. In addition, we compared MDC tips versus Axygen Tetra tips. The results showed that dye loading times between 1.0 and 3.0 hours had no significant effect on EC50, window sizes or, as a consequence, Z' statistics. There was no difference between the MDC or the Axygen tips.
[1292] FIG. 66: Dye loading time. OctR cells were loaded for 1 hr, 2 hr and 3 hrs to determine if there would be a shift in the octopamine EC50 with increasing dye loading time. In addition, we compared MDC tips with Axygen tips over the same amount of time. OctR cells were plated at 10K cells/well and assayed the following day. Culture medium was removed and cells loaded with 20 ul of 2 μM Fluo-4/probenecid per well at 25° C. After one two, and three hours, dye was removed and 20 μl of buffer was added to plate and placed in Tetra. A two-addition protocol was used. The first addition (2×) was 20 ul DMSO (0.5% final) in assay buffer read for 180 sec, and the second (3×) was 20 μl of octopamine at given dose in assay buffer read for an additional 180 sec. Statistics were calculated using the maximum of reads 20-180 (minimum response) and the maximum of reads 200-360(maximum response).
Dye Loading Temperature
[1293] The OctR cells loaded well at room temperature; so 37° C. was not examined.
Assay Buffer pH Optimization
[1294] Standard HBSS buffer at pH 7.4 was used throughout assay development.
Stability of Assay Buffer
[1295] Assay buffer stored at 4° C. was tested out to one week (data not shown) with no significant difference in performance.
Stability of Octopamine
[1296] Octopamine was tested comparing freshly diluted versus a 24-hour solution (data not shown). The response obtained with the 24-hour solution stored at room temperature was identical to that of the freshly diluted solution. We have repeatedly freeze-thawed 4° C. DMSO stocks of 10 mM octopamine with no reduction in activity.
Pipette Washing and Octopamine Carryover Assessment
[1297] In order to reduce the cost of the screen, tip washing experiments were performed to evaluate the ability to remove octopamine from the tips, so that the tips could be used multiple times. Octopamine is extremely sticky and is easily carried over on the tips to the next plate. The following DMSO wash protocol was evaluated:
[1298] 4 cycles times 2 strokes @ 28 μL, in 2.5% DMSO
[1299] Mix 10 strokes @ 25 μL in 100% DMSO
[1300] 1 cycle times 2 strokes @ 28 μL in 2.5% DMSO
[1301] 1 cycle times 2 strokes @ 28 μL in water
[1302] Based on the data shown in FIGS. 67A and B, the DMSO wash protocol did not eliminate octopamine from the tips and resulted in significant carryover into the 2nd plate (FIG. 67B). In addition, it should be noted that the length of the assay increased to over 11 minutes, which significantly impacted the number of plates that could be run per day (Notebook 1052125 #1 p124). Acetone was also tested once and worked very well to eliminate carryover (data not shown), but due to the low flash point, it would be a safety hazard to use acetone in the Tetra instrument. For this screen, tips will be changed in between plates.
[1303] FIG. 67: Tip washing assessment. FLIPR data showing maximum and minimum statistics for full plates with resulting CV and Z' statistics. OCTR cells were plated at 10K/well and assayed the following day. Culture medium was removed and cells loaded with 20 ul of 2 μM Fluo-4 plus probenecid per well for 1 hour at 25° C. After one hour, dye was removed and 20 μl of buffer plus probenecid was added to plate and placed in Tetra. A two-addition wash protocol was used. The first addition (2×) was 20 ul 1% DMSO in assay buffer (0.5% [final]) read for 180 sec, and the second (3×) was 20 ul 300 nM Octopamine in assay buffer (100 nM [final]) read for an additional 180 sec. The statistics were calculated using the maximum of reads 20-180 (minimum response) and the maximum of reads 200-360 (maximum response).
3-Day Variability Assessment
[1304] Three independent assays were performed on three different days to validate the appropriate concentrations of agonist (octopamine) or antagonist (mianserin) to be used during screening, and to validate the inter and intra plate variability of the assay. On each day, duplicate plates were run for each condition. The assay protocol was as follows: OctR cells were plated at 10K/well in 50 ul media and incubated at 370 C/5% CO2 for 18-24 hours prior to running in the Tetra. On the day of the assay, cells were dye loaded with 2 μl Fluo-4 for 1 hour at 250 C, dye removed, 20 μl buffer added to the plate, incubated at RT for 5 minutes, then run in the Tetra.
[1305] For the 3-day variability assessment, the following concentrations of agonist and antagonist were used:
[1306] 100% Agonist=100 nM (day 1) and 1 uM (day 2 and 3)
[1307] 80% Agonist=40 nM (day 1) and 100 nM (day 2 and 3)
[1308] 50% Agonist=5 nM (all days)
[1309] 50% Antagonist=40 nM (all days)
[1310] Time Cuts:
[1311] Read 1=20-180 max stat
[1312] Read 2=200-360 max stat
[1313] 1) Buffer+50% agonist+100% agonist. The following scatter plots show 3 days of duplicate plates in order to validate the ability of the assay to identify agonists. The 50% dose of octopamine was achieved on days 2 and 3
[1314] 2) Buffer+80% agonist+100% agonist. The following scatter plots show 3 days of duplicate plates in order to validate the 80% dose of octopamine, which will be used in the 2nd addition. As shown, the 80% dose was achieved on all three days.
[1315] 3) Buffer+50% antagonist+80% agonist. The following scatter plots show 3 days of duplicate plates in order to validate the ability of the assay to identify antagonists. Unfortunately, the incorrect dose of mianserin was used for all three days; however, the correct dose was achieved during the twenty-plate DMSO test run (FIG. 69B).
3-Day Agonist and Antagonist Dose Response Curves
[1316] Octopamine and mianserin dose response curves were run on three separate days to analyze EC50 shifts through time. The data in FIGS. 68A and B show that the EC50 for octopamine and the IC50 for mianserin were very reproducible over three days.
[1317] FIG. 68. OCTR cells were plated at 10K/well and assayed the following day. Culture medium was removed and cells loaded with 20 ul of 2 μM Fluo-4 plus probenecid per well for 1 hour at 25° C. After one hour, dye was removed and 20 μl of buffer plus probenecid was added to plate and placed in Tetra. A two-addition wash protocol was used. The first addition (2×) was 20 ul DMSO or mianserin at given dose in assay buffer read for 180 sec, and the second (3×) was 20 μl of octopamine at given dose (FIG. 55A) or 100 nM final octopamine (FIG. 55B) and read for an additional 180 sec. Statistics were calculated using the maximum of reads 20-180 (minimum response) and the maximum of reads 200-360(maximum response).
20-Plate DMSO Test Run
[1318] A 20 plate DMSO test run was performed in order to test the following:
[1319] Compound dilution scheme (page 30)
[1320] Reagent preparation volumes for 20-plate run (SOP page 30-31)
[1321] Dynamics of running: timing, equipment issues etc.
[1322] Table 5 shows the Z' for all 20 plates. All plates have acceptable Z', except for plate 6, which had a multidrop pipetting error that resulted in variable volumes of liquid being added across the plate. Plate 2 had one control well in the 1st addition (activation) that was low. Removing that point from the calculation resulted in the Z' activation=0.60.
TABLE-US-00008 TABLE 5 Plate z' Activation z' Inhibition Plate01 0.60 0.79 Plate02 0.47 0.65 Plate03 0.60 0.59 Plate04 0.64 0.81 Plate05 0.59 0.72 Plate06 0.20 0.29 Plate07 0.70 0.78 Plate08 0.66 0.76 Plate09 0.65 0.68 Plate10 0.68 0.69 Plate11 0.57 0.70 Plate12 0.64 0.74 Plate13 0.61 0.72 Plate14 0.71 0.76 Plate15 0.63 0.74 Plate16 0.63 0.74 Plate17 0.64 0.76 Plate18 0.60 0.73 Plate19 0.66 0.78 Plate20 0.53 0.78
[1323] FIG. 69 left panel is a scatter plot of plate #7, showing the controls and test wells for the agonist portion of the screen. The green squares are the 100% (1 μM) octopamine controls, the blue squares are the 0% or buffer controls, and the black diamonds are the test samples, in this case 0.5% final DMSO.
[1324] FIG. 69 right panel is a scatter plot of plate #7, showing the controls and test wells for the antagonist portion of the screen. The green squares are the 80% (100 nM) octopamine controls, the blue squares are the 0% or buffer controls, and the black diamonds are the test samples, in this case 100 nM octpamine+0.33% final DMSO. The black diamonds with larger values than the green squares are a 100% dose of octopamine (1 μM). These wells are not used in data calculation, but are included in the assay to validate the 80% dose of octopamine. The black diamonds with lower values than the green squares are the 100% controls from the 1st addition that have decreased over time. They are not included in any data calculations. The red squared are the 50% antagonist control (267 nM mianserin) and are included to ensure that the cells, are responding properly.
Data Calculations
[1325] The % activation and % inhibition were calculated by the following formulas:
% Activation=((Test sample-ave 0% act)/(ave 100% act-ave 0% act))×100%
% Inhibition=((Test sample-ave 0% inhib)/(ave 80% inhib-ave 0% inhib))×100
[1326] The Z' statistic for activation were calculated using the following formula:
1-((3×ave. STDEV min+3×ave STDEV max)/(abs ave 100%-ave 0%))
[1327] where min=0% activation and Max=100% activation
[1328] The Z' statistic for activation were calculated using the following formula:
1-((3×ave. STDEV min+3×ave STDEV max)/(abs ave 80%-ave 0%))
[1329] where min=0% activation and Max=80% activation
HTS SOP
TABLE-US-00009
[1330] Vendor Catalog # Base media type Ham's F12 Mediatech 010-080-cv FBS Hyclone Sh30071.02 trypsin-EDTA(high Conc.) Mediatech 15400-054 hygromycin (per 50 ml bottle) Calbiochem 400052 zeocin (per 1 g-10 ml-8 tubes/box) Invitrogen 46-0509 Pen/Strep (P/S/antimycotic) Mediatech bw17602e PBS Mediatech bw17512q Consumables (Plastics) Tissue Culture Treated Flasks (T175) Nunc 159910 Plates (black/clear, 384 well) bd falcon 353962 compound plates NUNC 264573 Tetra tips axygen
1) Materials
Assay Buffer (HBSS):
[1331] 20 mM Hepes; 11.1 mM Glucose; 1.8 mM CaCl2; 1 mM MgCl2; 125 mM NaCl; 2.5 mM KCl; 5 mM Probenecid; pH to 7.4 Osm 290
[1332] To make 1 L of HBSS, add 20 mls of 1M Hepes, 11.1 mls of 1M glucose, 1.8 mls of 1M CaCl2, 31.25 mls of 4M NaCl, 1 ml of 1M MgCl2 and 0.83 mls of 3M KCl to 935 mls of dH20. pH to 7.4 with NaOH. Store at 4° C.
Probenecid:
[1333] MW=285.4; ICN Biomedical (156370)
[1334] Add 14.2 grams of powder to 100 mls of 1M NaOH=500 mM
[1335] Add 10 ml of 500 mM stock to 1 L of HBSS and pH to 7.4 with HCL. Store at RT.
[1336] Fluo-4AM:
[1337] MW=1096.95; Molecular Probes (F-14202)
[1338] Add 912 μl of 100% DMSO to 1 mg vial=1 mM stock
[1339] 20% Pluronic F-127:
[1340] MW˜12500; Invitrogen (P3000MP)
[1341] 20% solution in DMSO
[1342] Octopamine:
[1343] MW=189.64; Sigma (0-0250)
[1344] 10 mM stock prepared in 100% DMSO
[1345] Mianserin:
[1346] MW=300.8; Sigma (M-2525)
[1347] 10 mM stock prepared in 100% DMSO
2) Cell Culture
A) Cell Culture Protocol
[1348] This assay uses one cell line: OCTR clone 55
[1349] Complete culture medium: Prepared in biosafety cabinet/laminar flow hood.
[1350] 1. 500 ml of Dulbecco's Modified Eagle's Medium/Ham's Nutrient Mixture F-12.
[1351] 2. Add 50 ml fetal bovine serum.
[1352] 3. Add 5 ml penicillin-streptomycin solution.
[1353] 4. Add 2.2 ml Hygromycin
[1354] 5. Add 1.5 ml Zeocin
[1355] 6. Sterile filter through 0.2 um filter and store at 4° C.
[1356] Thawing frozen cells: It is best at first to thaw cells early in the day on Monday so that the cell growth can be monitored and numbers adjusted during the week. The cell numbers listed below can only be considered rough guides as the cells may grow at a different rate in your culture medium.
[1357] 1. Remove a vial from liquid nitrogen storage and rapidly thaw the cells by immediately placing it in a 37° C. water bath and applying gentle agitation. Keep the O-ring and cap out of the water to reduce the possibility of contamination.
[1358] 2. When the contents are nearly thawed, remove the vial from water bath, mix by inverting, and decontaminate by spraying with 70% ethanol. All operations from this point on are carried out under aseptic conditions.
[1359] 3. Transfer the 1 ml of thawed cell suspension into a 50 ml conical bottom centrifuge tube containing 30 ml of complete medium.
[1360] 4. Centrifuge the cells for 5-7 minutes at 150 g.
[1361] 5. After centrifugation, remove medium by aspiration and resuspend the pellet in 5 ml of complete medium.
[1362] 6. Transfer the 5 ml of resuspended cells into a 225 cm2 flask containing 25 ml of complete medium.
[1363] 7. Inspect the culture flask the following morning and split for expansion or replace medium for further growth.
B) Subculture of Cells/Harvest Protocol
[1364] 1. Remove flasks from incubator.
[1365] 2. Aseptically aspirate old media from the flask in the hood.
[1366] 3. Add 5-10 ml PBS per flask.
[1367] 4. Rinse flask with the PBS briefly
[1368] 5. Aspirate PBS
[1369] 6. Add 3-5 ml RT trypsin
[1370] 7. Wash trypsin over cells briefly.
[1371] 8. Aspirate trypsin.
[1372] 9. Allow cells to detach for 3 minutes and tap flask to loosen cells.
[1373] 10. Add 8 ml media to the flask.
[1374] 11. Pipette several times to break up any clumps and to wash cells from the bottom of the flask. Stand flask on end while next steps are completed.
[1375] 12. If harvesting multiple flasks, then combine cells from all flasks into one flask and mix thoroughly.
[1376] 13. Remove 20 ul cell suspension from the flask and place into a tube for counting.
[1377] 14. Proceed to step C below.
C) Performing Cell and Viability Counts/Seeding of Flasks and Plates:
[1378] 1. After harvesting cells, prepare cells for counting by diluting in trypan blue and PBS at a 1:1 dilution: 20 μl cell suspension+20 μl of 0.4% trypan blue solution
[1379] NOTE: Trypan blue is available as a 0.4% solution and is used at a working concentration of 0.02%-0.04%, but works well at 0.2%. After being stained with trypan blue, the cells are counted within 3 minutes; after that time viable cells will begin to take up the dye.
[1380] 2. Using a pipette, withdraw a small amount of the stained cell suspension and place the tip of the pipette onto the slot of a clean hemacytometer with the coverslip. The cell suspension will pass under the coverslip by capillary action. Fill the opposite chamber. Do not overfill. The cell distribution should be homogeneous in both chambers.
[1381] 3. Place the hemacytometer on the stage of microscope and view one of the four large corner squares ruled by three lines. Viable cells will be slightly opalescent, round and pale with a darker outline. Nonviable cells will be dark, opaque blue.
[1382] 4. Count the viable cells in the four squares. Count the cells that overlap outside borders of squares but not those overlapping inside borders. Calculate the average number of viable cells per square (total viable cells in the four squares, divided by four).
[1383] 5. Record the cell counts from both chambers: If the counts differ by more than 20%, prepare a third sample to verify the count.
[1384] 6. The viable cell number is calculated using the formula:
Viable cell number/ml=average number of viable cells×104×dilution factor
% viability=number of viable cell counted/total number of cells×100
[1385] For seeding flasks, calculate the cells/ml of suspension and volume of cells needed.
[1386] For example,
[1387] Seed 10 flasks at 8.5e6 cells/flask using a cell suspension at 2.5e6cells/ml
[1388] Pipette 25 ml of complete media into each flask.
[1389] Calculate the volume of cell suspension that needs to be added to each flask.
[1390] 8.5e6/2.5e6=3.4 ml of cells added to each flask.
[1391] Pipette the cells into each flask.
[1392] Rock flasks gently to evenly coat the flask with cells and media.
[1393] Place flasks into 370 C/5% CO2 incubator.
[1394] The following table shows the seeding schedule and densities for T175 flasks.
TABLE-US-00010
[1394] Cell Culture Schedule for 20 plates/day 4 days/week # of vessels Mon. Tues. Wed. Thurs. Fri. available 13 13 13 13 0 # of flasks need for plating to make 27 0 0 0 20 # of flasks need more vessels total 40 13 13 13 20 Total # of flasks Splitting schedule overnight 10e6 c/f Cells need to be refed on second day ie. 2 days 8.5e6 c/f RF Th 3 days 5e6 c/f 4 days 2-2.5e6 c/f
[1395] For seeding plates, calculate the number of cells per plate needed.
[1396] For example,
[1397] Seed 20 plates at 10K cells/well using a cell suspension at 2.5e6cells/ml
[1398] Calculate the volume of cell suspension you will need.
[1399] 10,000cells/well×384 wells/plates=3.84e6 cells/plate
[1400] 3.84e6 cells/plate×23 plates=8.832e7 cells total
[1401] (Note: 23 plates is used in the calculation so that there is a dead volume for the multidrop)
[1402] 8.83e7 cells total/2.5e6cells/ml=35.3 ml of cell suspension
[1403] Calculate the total volume that you will add the cells suspension to:
[1404] 50 μl/well×384 wells/plates=19.2 ml/plate
[1405] 19.2 ml/plate×23 plates=442 ml total
[1406] To the 35.3 ml cell suspension, add 406.3 ml media.
[1407] Mix thoroughly and take a sample to count.
[1408] The cell count should be 5e5cells/ml or 2.5e4cells/50 μl
[1409] Use the multidrop to dispense cells into the plates:
[1410] Put multidrop head into the dispenser
[1411] Flush the head with 50 ml 70% EtOH
[1412] Flush with 70 ml sterile PBS
[1413] Place the cell suspension in a 500 ml conical bottom tube on the rotomix table and place the multidrop tubing into the cell suspension.
[1414] Prime the head with the cell suspension.
[1415] Dispense 50 μl/well into each plate. Make certain to keep the cells in suspension while dispensing and that the cells do not sit in the tubing. Both will result in patterns in the data.
[1416] Leave plates in a single layer at room temperature for at least 30 minutes, prior to placing into 370 C/5% CO2 incubator.
[1417] Make certain that plates are in a single layer in the incubator.
[1418] Clean multidrop tubing by flushing with 70 ml of 70% EtOH followed by 70 ml of dH2O.
3) HTS 20 Plate Screening Assay
[1419] A) One day prior to assay:
[1420] Harvest cells from flasks. Seed 20×384-well plates at 10 Kcells/well/50 μl per well. Leave plates at RT for at least 30 min to reduce edge effects (see page 29 for details).
[1421] Incubate at 37(C/5% CO2 overnight (16-24 hours, stacking no more than 1 plate high).
B) Day of the Assay:
[1422] 1. Prepare Tripos Read 1:
[1423] Place the 45 μL 2 mM stock plate into source position #1 on Tetra
[1424] Place a new 384-well plate with 45 μl of HBSS (no DMSO) in columns 3-22 in source position #2
[1425] Place a new 384-well plate with 90 μl of HBSS (no DMSO) in columns 3-22 in read position
[1426] Run Tripos compound dilution control file
[1427] The Tripos compound dilution control file is depicted in FIG. 87.
[1428] Or,
[1429] 1. Prepare Divpick Read 1:
[1430] Using multidrop, add 45 μl of HBSS to stock plate containing 5 μl of compound for a final stock of 200 μM.
[1431] Place the 50 μL 200 μM stock plate into source position #2 in Tetra
[1432] Place a new 384-well plate with 90 μl of HBSS (no DMSO) in columns 3-22 in read position
[1433] Run Divpick compound dilution control file
[1434] The Divpick compound dilution control file is depicted in FIG. 88.
[1435] 2. Prepare Read Plate 1 Controls.
[1436] Make up HBSS 1% DMSO buffer by adding 750 μl of 100% DMSO to 75 mls of HBSS. Add 60 μl to appropriate wells according to READ 1 plate map below.
[1437] Make up 100% Octopamine by adding 5 μL of 10 mM stock to 25 ml of HBSS for a 2 μM (2×) concentration. Add 60 μl to appropriate wells according to READ 1 plate map below.
[1438] Make up 50% Mianserin by adding 50 μL of 100 μM stock to 6.25 ml of HBSS for a 800 nM (2×) concentration. Add 60 μl to appropriate wells according to READ 1 plate map below.
[1439] The Read 1 plate map is depicted in FIG. 89.
[1440] 3. Prepare Read 2 plates
[1441] Make up 80% octopamine by adding 165 μL of 1 mM stock to 550 ml of HBSS for a 300 nM (3×) concentration. Add 60 μls to appropriate wells according to READ 2 plate map below.
[1442] Make up 100% octopamine by adding 37.5 μL of 1 mM stock to 12.5 ml of HBSS for a 3 μM (3×) concentration. Add 60 μls to appropriate wells according to READ 2 plate map below.
[1443] Add 60 μLs of HBSS (no DMSO) to appropriate wells according to READ 2 plate map below.
[1444] The Read 2 plate map is depicted in FIG. 90.
[1445] 4. Dye Load
[1446] Prepare dye by adding 0.5 ml of 1 mM Fluo-4 together with 0.5 ml of 20% pluronic into a tube, mix, then add mixture into 250 mls of HBSS/probenecid.
[1447] Remove media from cell plates by flicking plates into sink containing Clorox, tap gently on kimwipes to remove excess, and add 20 μl/well of dye using multidrop.
[1448] Place in RT incubator for 60 min.
[1449] 5. Run the Assay
[1450] Remove dye from cell plate by flicking into sink containing bleach; tap gently on Kimwipes to remove excess dye.
[1451] Add 20 μl of HBSS using multidrop to cell plate; place in read position in FLIPR and wait 5 minutes prior to running in FLIPR. (***Failure to wait 5 minutes will increase the variability in the plate)
[1452] Place Read 1 compound plate into source #1
[1453] Place Read 2 compound plate into source #2
[1454] Run protocol: OCTR HTS screen on Tetra
[1455] FLIPR read settings:
[1456] 1st addition=180 reads at 1 sec interval with 20 μl addition after 10 baseline reads
[1457] 2nd addition=120 reads at 1 sec interval with 20 μl addition after 10 baseline reads
[1458] 7. Data Export
[1459] After 20 plates have been run, manually batch export maximum statistics from read 1-180 as stat1 and reads 200-300 as stat2. These statistics are then copied into an excel spreadsheet to calculate the percent control for inhibition and activation.
[1460] A screenshot of the Batch Export statistics interface is depicted in FIG. 91.
The Following Examples are in Connection with the SK-Channel: 1.
[1461] The potassium channel is responsible for the survival of Dm. In transient RNAi experiments it was demonstrated that reduced viability and lethality effects are induced in Dm. In comparison to buffer control as-well-as injection of a known nonlethal RNAi, RNAi produced from SEQ ID NO: 227, shows measurable reduced viability in Dm.
TABLE-US-00011 Construct injected eggs developing eggs larvae hatched dev E to L rate Pupae L to P rate Adults P to A rate survival devE to A Buffer only 82 71 50 70.42% 40 80.00% 37 92.50% 52.11% Nonlethal Control 99 92 79 85.87% 74 93.67% 63 85.14% 68.48% Seq No: 1 RNAi 87 74 50 67.57% 33 66.00% 31 93.94% 41.89% Lethal Control 82 72 28 38.89% 13 46.43% 11 84.62% 15.28%
2. Expression of Drosophila SK Gene in CHO Cells
[1462] Gene name small conductance calcium-activated potassium channel
TABLE-US-00012 Synonyms CG10706 Species Drosophila melanogaster Final clone name pCRII-SK2 + 4D (coding sequence only) FIG. 70 Base vector pCRII-TOPO (Invitrogen) Primers Forward: (SEQ ID NO: 233) SK 5'1 5'ATGAAAACACCTTCCATTGC 3' Reverse: (SEQ ID NO: 224) SK 3'2 5'TCAGCTGCCGTATTTGTTGG 3'
Cloning Strategy:
[1463] Coding sequence from mixed fs-cDNA (head and 2nd instar) was PCR amplified using the above primers, and cloned into pCRII-TOPO vector. 2 independent clones were chosen for sequencing, 2 and 4D, and a perfect sequence was created by subcloning the AvrI/NdeI 498 bp fragment from 2 into the AvrI/NdeI 5233 bp vector fragment of 4D.
Expression Construct
[1464] pTriEx3 Neo SK was created by ligating the 1.8 kb EcoRV/BamHI fragment from pCRII-SK2+4D to the EcoRV and BamHI sites of pTriEx3-Neo. The resulting construct contains the SK CDS downstream of the CMV promoter and adds nine codons to the 5' end as a result being in-frame with the Kozak translation start consensus. FIG. 71 Transfection: CHO-K1 cells were plated in 35 mm 6-well plates at 2.5×104 cells/well and transfected the following day with 1 ug pTriEx3 Neo SK DNA from each of three different bacterial clones using FuGENE 6 transfection reagent (Roche Diagnostics Corporation) and the manufacturer's recommendations. Cells were passaged 24 hr later into 75 cm2 flasks and placed under antibiotic selection (400 ug/ml G-418, Calbiochem).
3. Testing Functionality
[1465] Basic test protocol: Cells were plated at 5×104/well into 96-well poly-D-lysine assay plates (BD Biosciences) and placed at 37 C/5% CO2 the day before testing. Culture medium was aspirated and replaced with 0.4× blue membrane potential dye (Molecular Devices Corporation) in assay buffer and incubated for 1 hour at RT. The assay was run by reading baseline fluorescence for 20 sec, and reading an additional 60 or 180 sec after activation.
[1466] Pool testing: Once selection was complete (about 10 days) the cells were passaged again into assay plates and culture vessels for expansion. The three transfection pools were tested for function using 1 uM [final] ionomycin (a Ca2+ ionophore) as an activator. Pool 3 (clone SK3) showed the expected hyperpolarization in response to presumptive Ca2+ influx. FIG. 72
4. Assay Protocol
Assay Buffer (Prepared Fresh Daily):
TABLE-US-00013
[1467] Stock solution Final concentration 1M KCl 1 mM 1M CaCl2 2.3 mM 0.5M NaHCO3 5 mM 1M MgCl2 1 mM 5M NaCl 154 mM 1M D(+)glucose 5.5 mM 1M HEPES pH 7.4 20 mM
[1468] Stock solutions can be sterile-filtered and stored indefinitely at room temperature, with the exception of glucose, which is stored at 4° C. The assay buffer is prepared by starting with 0.8 volume of high-quality water; adding stock components to the final concentration, and adjusting the volume. The solution is sterile-filtered and the pH adjusted to 7.4 with IN NaOH.
[1469] A 10 mM ionomycin (MW=709) stock is prepared by dissolving the powder in DMSO to a final concentration of 7.1 mg/ml. This solution is stored at 4° C. and is stable for one year.
[1470] Activation solution (5×) is prepared by adding 10 mM ionomycin to assay buffer to a final concentration of 5 uM (1:2000 dilution). This solution should be prepared fresh daily. We have heard reports of ionomycin sticking to certain types of polypropylene, but have not seen this with the tips, tubes and compound plates we are using, with the exception of the black FLIPR Tetra 96-well tips.
[1471] This assay was developed using the Molecular Devices blue membrane potential dye at 0.4× the normal concentration. It is important to vortex the dye upon hydration and rinse the vial repeatedly to ensure that all the dye has been recovered and that it is in solution. The dye can be stored during the day at 4°. Dye loading is carried out by flipping the culture medium from the 96-well poly-D-lysine plate, gently tapping the plate on Kimwipes to remove excess medium, replacing it with 180 ul 0.4× dye per well, and incubating in the dark at room temperature (25° C.-28° C.) for 3-5 hr. The assay plate is now ready for testing which comprises a 20 ul (10×) first addition and 50 ul (5×) second addition. 50 uM propafenone [final] is used as a control inhibitor. The assay is read for three minutes after activation to allow maximum window development relative to controls.
[1472] Special reagents: lonomycin, free acid (Calbiochem #407950)
[1473] Propafenone hydrochloride (Sigma # P4670)
5. Cloning:
[1474] Cells from pool 3 were diluted to 12 cells/ml and 250 ul was dispensed into each well of two 96-well culture plates. Wells containing a single clone were identified after one week's growth and picked for expansion and testing the following week.
[1475] Clone screening: Fifteen individual clones were screened for function using the same conditions as pool testing. The time and extent of maximum hyperpolarization as well as a measurement of the sustainability of the hyperpolarization were used to select the best performing clones for further evaluation.
6. Functional Validation
[1476] An experiment was undertaken to examine the response to elimination of external Ca2+. If the channel is indeed activated by the import of Ca2+ by ionomycin, then removing Ca2+ from the outside of the cell should reduce the differential response. FIG. 73
[1477] Conclusion: Elimination of Ca2+ from the assay buffer reduced maximum hyperpolarization to within 20% of wildtype and abolished the differential response altogether by timepoint 120 sec. Therefore, the SK-expressing cells require Ca2+ for full response, indicating a Ca2+-dependent activation.
7. Activation Optimization/EC50
[1478] Tests were conducted to determine the optimal concentration of ionomycin in the activation buffer needed to produce a robust signal with a large response window relative to controls. The EC50 for ionomycin on SK3 was calculated in three separate experiments, yielding a value of 200 nM (SD=10). There was no increase in the size of the response window relative to controls above 800 nM ionomycin. These results correspond to literature values of 1 uM for full activation of Ca2+-dependent channels (Terstappen et al., 2001. Neuropharmacology 40).
[1479] Sample data: FIG. 74
[1480] pTX-CHO is a mock transfected cell line, i.e. a cell line transfected with vector that does not contain the gene of interest to show any activity in screening is due to the gene of interest and not the vector.
8. Variability in Relation to Dye Loading Time
[1481] Tests were conducted to examine the assay window size relative to dye loading time. 24 wells each SK3-9 and pTx-CHO were loaded at room temperature for the times indicated on the following chart, up to nearly five hours: FIG. 75
[1482] The window size stabilized at maximum after 3 hours and variability among wells was reduced (data not shown). Based on these results, a dye load time of 3-5 hours is recommended for screening.
9. DMSO Tolerance
[1483] Cells responded predictably to increasing levels of DMSO in the first (10×) addition with increased instability and a narrowing of the assay window. Additions resulting in DMSO levels above 0.2% showed severe perturbations after ionomycin activation. FIG. 76
10. Ionomycin Stability
[1484] An experiment was conducted (data not shown) to examine the stability of ionomycin in solution. Ionomycin was diluted to 5 uM in assay buffer, loaded into a compound plate and compared with freshly-prepared ionomycin for SK activation the following day. The freshly-prepared ionomycin yielded a statistically significant 6% increase in assay window size, so our recommendation is for freshly-prepared ionomycin.
11. Statistical Tests
[1485] The following half-plate data (FIG. 77) was used to calculate two statistical parameters from timepoint 260 sec using zero baseline with a lag time of 80 sec.
[1486] t-test: The two-tailed P value is less than 0.0001. Therefore, the probability of the differential response occurring by chance is essentially zero.
[1487] Z'-factor data table (units are -K RFUs, n=24):
TABLE-US-00014 SK3-9 220 205 217 218 215 208 239 227 223 224 217 224 250 236 238 228 224 237 250 240 266 243 233 239 AVE 230 STD 14 pTx-CHO -10 -5 9 2 15 -21 32 20 25 15 20 5 32 28 27 18 26 38 50 34 38 36 31 41 AVE 22 STD 16 Z'-factor 0.56
[1488] This statistic places the test in the "an excellent assay" category
[1489] (Zhang et al., 1999. Journal of Biomolecular Screening 4. A Simple Statistical Parameter for Use in Evaluation and Validation of High Throughput Screening Assays).
12. Ion Channel Library Testing
[1490] The DmSK3 clone was tested at 10 uM on a set of 71 compounds comprised of known activators, agonists and inhibitors across the major ion channel types (BIOMOL #2805, Ion Channel Ligand Library). Cells were incubated with compound for 1 min before activation by 1 uM ionomycin.
Summary of Results
[1491] Seventeen of the 71 compounds (24%) had a clear effect on the response of the cells to ionomycin. Of these, nine (13%) appeared to be inhibitory to hyperpolarization and eight (11%) had an activator/agonist effect on response. In general terms, DmSK3 tended to respond to compounds involved in Ca2+ movements and were relatively insensitive to K+ and Na+ channel modulators (with some exceptions).
Selected Results (from SK3 Testing)
[1492] BAY K-8644 L-type Ca2+ channel agonist FIG. 78
[1493] Propafenone Efficacious potassium channel blocker. FIG. 79
[1494] TEA (SK3) (Tetraethylammonium) FIG. 80
[1495] 4-AP (SK3-4) (4-aminopyridine) FIG. 81
[1496] propafenone (SK3) FIG. 82
13. Apamin Sensitivity
[1497] Mammalian SK channels are characterized by their sensitivity to the peptide toxin apamin, from bee venom. We found DmSK to be apamin-insensitive, even at high dose (10 uM, data not shown).
14. SK Expression in CHO Cells Tested with the Patch-Clamp Technique
Materials and Methods
Cells:
[1498] Chinese hamster ovary (CHO) cells stably transfected with a Drosophila SK gene were used for all measurements. Cells were plated in 35 mm Petri dishes 18-22 hours before the experiment.
Electrophysiology:
[1499] Data were acquired and analyzed using pClamp software (version 9.0.1.16). The whole-cell configuration of the patch-clamp technique was used to voltage clamp cells at room temperature (22-25° C.). Pipettes were pulled from borosilicate glass capillaries (8250, Garner Glass, Claremont, Calif.) using a DMZ Universal Puller (Zeitz, Munich, Germany) and had resistances of 2-3 MOhm when filled with pipette solution and measured in bath solution. The liquid junction potential between bath and pipette solution was always compensated before the formation of a gigaohm seal.
[1500] Membrane current was measured under whole-cell clamp, sampled at 2 kHz and filtered at 1 kHz by an Axoclamp 200B (Axon Instruments). Capacitance currents were electronically compensated at the beginning of each experiment. Due to the linear nature of the IV-curve, leak correction was not applied.
[1501] To study SK currents on CHO cells, cells were held at -40 mV and a family of 200 ms test voltage pulses were applied starting from -100 to +130 mV in 10 mV increments every 2 sec. The amplitude, as measured for the current-voltage relationship, was defined as the maximal outward current at a given depolarizing potential.
[1502] Inhibitors were added directly to the bath solution.
TABLE-US-00015 Bath solution: pipette solution: mM mM KCl 30 KCl 140 NaCl 110 MgCl2 1 MgCl2 1 CaCl2 1 CaCl2 0.1 HEPES 10 HEPES 10 pH 7.2 pH 7.2 (with NaOH) (with KOH) 295 mOsm 280 mOsm
Results
[1503] Experiment: Test of DmSK expression in CHO cells (Clone SK) FIG. 83
Conclusion:
[1504] CHO cells transfected with the DmSK gene (clone SK) show functional expression of the channels.
[1505] Experiment: Effect of Propafenone on DmSK expressing CHO cells (Clone SK)
[1506] Purpose: To confirm the results obtained with the plate-based FlexStation II and FLIPR experimental procedure, cells were subjected to 70 uM Propafenone, under whole-cell patch clamp conditions. FIG. 85 Conclusion:
[1507] The DmSK-A2 channels are completely blocked by the addition of 70 uM Propafenone.
15. Xenopus laevis Oocyte Expression of the DmSK Potassium Channel
[1508] Purpose: To utilize the oocyte two-electrode voltage clamp expression system to assay functional expression of the voltage-gated Drosophila melanogaster small-conductance calcium-activated potassium channel (SK) within Xenopus laevis oocytes.
[1509] Ovarian lobes freshly harvested from a Xenopus laevis frog were ordered from NASCO (Fort Atkinson, Wis.).
[1510] Oocytes were isolated with 1.5 mg/ml collagenase Type 1A in 20 ml of calcium-free OR-2 oocyte buffer at room temperature.
[1511] Stage V-VI oocytes were injected with 50 nl of in vitro transcribed DmSK RNA (1 ug/ul) using a Drummond Nanoject Injector (pCRII-SK2+4D plasmid linearized with HindIII and transcribed using the Ambion T7 mMessage mMachine transcription kit).
[1512] Oocytes were incubated at 18° C. for 2 days in supplemented ND-96.
[1513] Channel expression was assayed using two-electrode voltage clamp (borosilicate glass 1.5 mm×1.12 mm filled with 3M KCl) through a Turbo Tec 10C Amplifier (NPI Instruments) connected to an Apple PowerMac G3 via an ADInstruments PowerLab system.
[1514] Injected oocytes with resting potentials greater than -30 mV were clamped at +5 mV and perfused with ND-96 bath solution (96 mM NaCl, 2 mM KCl, 1 mM MgCl2, 0.3 mM CaCl2, 5 mM HEPES at pH 7.5 and 230 mOsm) Currents measured were filtered at 2 kHz and with a 50/60 Hz Hum-Bug noise eliminator.
[1515] SK channels were activated with intracellular injection of 100 mM cadmium chloride (9.2 nl) using the nanobject while clamped. Measured currents were compared to published results of SK activation within oocytes (FIG. 85).
Results:
[1516] Initial evaluation of the functional expression of the DmSK Channel within the oocyte expression system produced outward currents activated by at least three 9.2 nl injections of cadmium chloride inside the oocytes. Compared to the results examined using expression of rat SK (ref. 4), this insect SK channel appears to require more calcium-like activation (28 nl of 100 mM CdCl2).
[1517] A reference graph of activity of rat SK channel in oocyte expression system from Grunnet et al. Journal of Neuroscience Methods 2004 is reproduced in FIG. 92.
Sequence CWU
1
1
25311473DNADrosophila melanogaster 1atggcctcgg tcgccgcttg gctgcccttc
gcccgggcgg cggccatcgg gtgggtgccg 60atagccaccc acccactgcc accgcccccg
atgcccaagg atcgccgcaa aacggacgac 120gagaagctcc tgatcaacgt ctccgggcgg
cgtttcgaga cgtggcggaa tactttggag 180aagtatccgg acaccctttt aggttccaat
gaaagggagt tcttctacga cgaggactgc 240aaagaatact tcttcgatcg ggacccggac
atcttccggc acatactgaa ctactaccgg 300acgggcaagc tgcactaccc gaagcacgaa
tgcctcacca gctacgacga ggagctggcc 360ttctttggaa taatgccgga tgtcattggc
gattgctgct acgaggacta ccgggaccgg 420aagcgggaga acgcggagcg gctgatggac
gacaagctgt cggagaacgg ggatcagaat 480ctgcagcagc tgaccaacat gcgccagaag
atgtggcggg ccttcgagaa tccgcacacg 540tcgacgagcg ccctggtgtt ctactatgtt
acgggtttct tcatcgccgt ctccgtgatg 600gccaacgtgg tggagacggt gccgtgtggc
caccggccgg gcagagcggg aactctgccc 660tgcggcgagc gctacaagat cgtcttcttc
tgcctggata ccgcctgcgt gatgatcttt 720acggcggagt acctacttcg actcttcgcc
gcccccgatc gctgcaagtt cgtgcgctcg 780gtgatgagca ttattgatgt ggtggccatt
atgccgtact acattggcct cgggatcacc 840gacaacgacg acgtgagcgg tgctttcgtc
acgctgcgcg tgttccgtgt cttccgcata 900ttcaagttct cgcgccactc gcaaggactt
cggatcctcg gctacacgct caagtcctgc 960gccagcgaac tgggcttcct tgtcttctcg
ctggccatgg ccattatcat ctttgccacc 1020gtcatgttct acgccgagaa gaacgtcaat
ggcaccaact tcacatcgat tccggcggcc 1080ttctggtata ccatcgtcac aatgacgacg
ctgggatatg gcgacatggt gccagagaca 1140atagctggca aaattgtggg cggcgtctgc
tcgcttagcg gtgtgctggt catcgcctta 1200cctgtacctg ttatcgtatc gaactttagt
agaatctatc accagaacca gcgagcggac 1260aagcgcaagg cgcagcggaa agctcgcctg
gcgcgcatcc gcattgccaa ggcctcgtcc 1320ggagccgcct ttgttagcaa gaagaaggcc
gccgaggccc ggtgggctgc ccaggagtcg 1380ggcatcgagc tggatgacaa ctatcgggac
gaggacatct tcgagctgca gcaccatcat 1440ttgctgcgat gtctggagaa gacaacgatg
tag 14732490PRTDrosophila melanogaster
2Met Ala Ser Val Ala Ala Trp Leu Pro Phe Ala Arg Ala Ala Ala Ile 1
5 10 15 Gly Trp Val Pro
Ile Ala Thr His Pro Leu Pro Pro Pro Pro Met Pro 20
25 30 Lys Asp Arg Arg Lys Thr Asp Asp Glu
Lys Leu Leu Ile Asn Val Ser 35 40
45 Gly Arg Arg Phe Glu Thr Trp Arg Asn Thr Leu Glu Lys Tyr
Pro Asp 50 55 60
Thr Leu Leu Gly Ser Asn Glu Arg Glu Phe Phe Tyr Asp Glu Asp Cys 65
70 75 80 Lys Glu Tyr Phe Phe
Asp Arg Asp Pro Asp Ile Phe Arg His Ile Leu 85
90 95 Asn Tyr Tyr Arg Thr Gly Lys Leu His Tyr
Pro Lys His Glu Cys Leu 100 105
110 Thr Ser Tyr Asp Glu Glu Leu Ala Phe Phe Gly Ile Met Pro Asp
Val 115 120 125 Ile
Gly Asp Cys Cys Tyr Glu Asp Tyr Arg Asp Arg Lys Arg Glu Asn 130
135 140 Ala Glu Arg Leu Met Asp
Asp Lys Leu Ser Glu Asn Gly Asp Gln Asn 145 150
155 160 Leu Gln Gln Leu Thr Asn Met Arg Gln Lys Met
Trp Arg Ala Phe Glu 165 170
175 Asn Pro His Thr Ser Thr Ser Ala Leu Val Phe Tyr Tyr Val Thr Gly
180 185 190 Phe Phe
Ile Ala Val Ser Val Met Ala Asn Val Val Glu Thr Val Pro 195
200 205 Cys Gly His Arg Pro Gly Arg
Ala Gly Thr Leu Pro Cys Gly Glu Arg 210 215
220 Tyr Lys Ile Val Phe Phe Cys Leu Asp Thr Ala Cys
Val Met Ile Phe 225 230 235
240 Thr Ala Glu Tyr Leu Leu Arg Leu Phe Ala Ala Pro Asp Arg Cys Lys
245 250 255 Phe Val Arg
Ser Val Met Ser Ile Ile Asp Val Val Ala Ile Met Pro 260
265 270 Tyr Tyr Ile Gly Leu Gly Ile Thr
Asp Asn Asp Asp Val Ser Gly Ala 275 280
285 Phe Val Thr Leu Arg Val Phe Arg Val Phe Arg Ile Phe
Lys Phe Ser 290 295 300
Arg His Ser Gln Gly Leu Arg Ile Leu Gly Tyr Thr Leu Lys Ser Cys 305
310 315 320 Ala Ser Glu Leu
Gly Phe Leu Val Phe Ser Leu Ala Met Ala Ile Ile 325
330 335 Ile Phe Ala Thr Val Met Phe Tyr Ala
Glu Lys Asn Val Asn Gly Thr 340 345
350 Asn Phe Thr Ser Ile Pro Ala Ala Phe Trp Tyr Thr Ile Val
Thr Met 355 360 365
Thr Thr Leu Gly Tyr Gly Asp Met Val Pro Glu Thr Ile Ala Gly Lys 370
375 380 Ile Val Gly Gly Val
Cys Ser Leu Ser Gly Val Leu Val Ile Ala Leu 385 390
395 400 Pro Val Pro Val Ile Val Ser Asn Phe Ser
Arg Ile Tyr His Gln Asn 405 410
415 Gln Arg Ala Asp Lys Arg Lys Ala Gln Arg Lys Ala Arg Leu Ala
Arg 420 425 430 Ile
Arg Ile Ala Lys Ala Ser Ser Gly Ala Ala Phe Val Ser Lys Lys 435
440 445 Lys Ala Ala Glu Ala Arg
Trp Ala Ala Gln Glu Ser Gly Ile Glu Leu 450 455
460 Asp Asp Asn Tyr Arg Asp Glu Asp Ile Phe Glu
Leu Gln His His His 465 470 475
480 Leu Leu Arg Cys Leu Glu Lys Thr Thr Met 485
490 321DNAArtificial Sequenceprimer 3gccaccatgg cctcggtcgc c
21420DNAArtificial
Sequenceprimer 4ctacatcgtt gtcttctcca
205621DNADrosophila melanogaster 5atggcctcac caccggagag
tcccatcgag gaggtggtct atgagttgga acacacacga 60gtgcctaagc ccattcccgt
tgccctcgag gatctgtgcc ggcagaccaa gttcaccaaa 120caggaaatcc gcgtcatgta
cagaggattc aaaacggaat gccccgaggg cgtggtacac 180gaggattgtt ttaaggatat
ctacgccaaa ttctttccac atggcaattc aagtttatac 240gctcattatg tgttcaaagc
gttcgatgtt aattgcaatg gcgccattag ttttcgggat 300ttactggtca ccttgtcgac
cttgctgaga ggttctgtat atgagcgtct gcgttggacc 360ttcaagttgt acgatctgaa
cggcgacgga aggatcagtc gcggcgaact gagtgaaatt 420attttggcca ttcacgagct
tatgggtcgg agaccacatc aacctgagga cgatcgcaag 480gcgagggatc aggttgatcg
tgtgtttcgc aaactggact tgaaccaaga tggcattata 540acgatagagg agtttttgga
ggcctgcctg aaggacgact tggtaactcg atcgctgcaa 600atgttcgaca acgacctttg a
6216206PRTDrosophila
melanogaster 6Met Ala Ser Pro Pro Glu Ser Pro Ile Glu Glu Val Val Tyr Glu
Leu 1 5 10 15 Glu
His Thr Arg Val Pro Lys Pro Ile Pro Val Ala Leu Glu Asp Leu
20 25 30 Cys Arg Gln Thr Lys
Phe Thr Lys Gln Glu Ile Arg Val Met Tyr Arg 35
40 45 Gly Phe Lys Thr Glu Cys Pro Glu Gly
Val Val His Glu Asp Cys Phe 50 55
60 Lys Asp Ile Tyr Ala Lys Phe Phe Pro His Gly Asn Ser
Ser Leu Tyr 65 70 75
80 Ala His Tyr Val Phe Lys Ala Phe Asp Val Asn Cys Asn Gly Ala Ile
85 90 95 Ser Phe Arg Asp
Leu Leu Val Thr Leu Ser Thr Leu Leu Arg Gly Ser 100
105 110 Val Tyr Glu Arg Leu Arg Trp Thr Phe
Lys Leu Tyr Asp Leu Asn Gly 115 120
125 Asp Gly Arg Ile Ser Arg Gly Glu Leu Ser Glu Ile Ile Leu
Ala Ile 130 135 140
His Glu Leu Met Gly Arg Arg Pro His Gln Pro Glu Asp Asp Arg Lys 145
150 155 160 Ala Arg Asp Gln Val
Asp Arg Val Phe Arg Lys Leu Asp Leu Asn Gln 165
170 175 Asp Gly Ile Ile Thr Ile Glu Glu Phe Leu
Glu Ala Cys Leu Lys Asp 180 185
190 Asp Leu Val Thr Arg Ser Leu Gln Met Phe Asp Asn Asp Leu
195 200 205 727DNAArtificial
Sequenceprimer 7atggcctcac caccggagag tcccatc
27831DNAArtificial Sequenceprimer 8tcaaaggtcg ttgtcgaaca
tttgcagcga t 3191479DNADrosophila
melanogaster 9gccaccatgg cctcggtcgc cgcttggctg cccttcgccc gggcggcggc
catcgggtgg 60gtgccgatag ccacccaccc actgccaccg cccccgatgc ccaaggatcg
ccgcaaaacg 120gacgacgaga agctcctgat caacgtctcc gggcggcgtt tcgagacgtg
gcggaatact 180ttggagaagt atccggacac ccttttaggt tccaatgaaa gggagttctt
ctacgacgag 240gactgcaaag aatacttctt cgatcgggac ccggacatct tccggcacat
actgaactac 300taccggacgg gcaagctgca ctacccgaag cacgaatgcc tcaccagcta
cgacgaggag 360ctggccttct ttggaataat gccggatgtc attggcgatt gctgctacga
ggactaccgg 420gaccggaagc gggagaacgc ggagcggctg atggacgaca agctgtcgga
gaacggggat 480cagaatctgc agcagctgac caacatgcgc cagaagatgt ggcgggcctt
cgagaatccg 540cacacgtcga cgagcgccct ggtgttctac tatgttacgg gtttcttcat
cgccgtctcc 600gtgatggcca acgtggtgga gacggtgccg tgtggccacc ggccgggcag
agcgggaact 660ctgccctgcg gcgagcgcta caagatcgtc ttcttctgcc tggataccgc
ctgcgtgatg 720atctttacgg cggagtacct acttcgactc ttcgccgccc ccgatcgctg
caagttcgtg 780cgctcggtga tgagcattat tgatgtggtg gccattatgc cgtactacat
tggcctcggg 840atcaccgaca acgacgacgt gagcggtgct ttcgtcacgc tgcgcgtgtt
ccgtgtcttc 900cgcatattca agttctcgcg ccactcgcaa ggacttcgga tcctcggcta
cacgctcaag 960tcctgcgcca gcgaactggg cttccttgtc ttctcgctgg ccatggccat
tatcatcttt 1020gccaccgtca tgttctacgc cgagaagaac gtcaatggca ccaacttcac
atcgattccg 1080gcggccttct ggtataccat cgtcacaatg acgacgctgg gatatggcga
catggtgcca 1140gagacaatag ctggcaaaat tgtgggcggc gtctgctcgc ttagcggtgt
gctggtcatc 1200gccttacctg tacctgttat cgtatcgaac tttagtagaa tctatcacca
gaaccagcga 1260gcggacaagc gcaaggcgca gcggaaagct cgcctggcgc gcatccgcat
tgccaaggcc 1320tcgtccggag ccgcctttgt tagcaagaag aaggccgccg aggcccggtg
ggctgcccag 1380gagtcgggca tcgagctgga tgacaactat cgggacgagg acatcttcga
gctgcagcac 1440catcatttgc tgcgatgtct ggagaagaca acgatgtag
147910492PRTDrosophila melanogaster 10Ala Thr Met Ala Ser Val
Ala Ala Trp Leu Pro Phe Ala Arg Ala Ala 1 5
10 15 Ala Ile Gly Trp Val Pro Ile Ala Thr His Pro
Leu Pro Pro Pro Pro 20 25
30 Met Pro Lys Asp Arg Arg Lys Thr Asp Asp Glu Lys Leu Leu Ile
Asn 35 40 45 Val
Ser Gly Arg Arg Phe Glu Thr Trp Arg Asn Thr Leu Glu Lys Tyr 50
55 60 Pro Asp Thr Leu Leu Gly
Ser Asn Glu Arg Glu Phe Phe Tyr Asp Glu 65 70
75 80 Asp Cys Lys Glu Tyr Phe Phe Asp Arg Asp Pro
Asp Ile Phe Arg His 85 90
95 Ile Leu Asn Tyr Tyr Arg Thr Gly Lys Leu His Tyr Pro Lys His Glu
100 105 110 Cys Leu
Thr Ser Tyr Asp Glu Glu Leu Ala Phe Phe Gly Ile Met Pro 115
120 125 Asp Val Ile Gly Asp Cys Cys
Tyr Glu Asp Tyr Arg Asp Arg Lys Arg 130 135
140 Glu Asn Ala Glu Arg Leu Met Asp Asp Lys Leu Ser
Glu Asn Gly Asp 145 150 155
160 Gln Asn Leu Gln Gln Leu Thr Asn Met Arg Gln Lys Met Trp Arg Ala
165 170 175 Phe Glu Asn
Pro His Thr Ser Thr Ser Ala Leu Val Phe Tyr Tyr Val 180
185 190 Thr Gly Phe Phe Ile Ala Val Ser
Val Met Ala Asn Val Val Glu Thr 195 200
205 Val Pro Cys Gly His Arg Pro Gly Arg Ala Gly Thr Leu
Pro Cys Gly 210 215 220
Glu Arg Tyr Lys Ile Val Phe Phe Cys Leu Asp Thr Ala Cys Val Met 225
230 235 240 Ile Phe Thr Ala
Glu Tyr Leu Leu Arg Leu Phe Ala Ala Pro Asp Arg 245
250 255 Cys Lys Phe Val Arg Ser Val Met Ser
Ile Ile Asp Val Val Ala Ile 260 265
270 Met Pro Tyr Tyr Ile Gly Leu Gly Ile Thr Asp Asn Asp Asp
Val Ser 275 280 285
Gly Ala Phe Val Thr Leu Arg Val Phe Arg Val Phe Arg Ile Phe Lys 290
295 300 Phe Ser Arg His Ser
Gln Gly Leu Arg Ile Leu Gly Tyr Thr Leu Lys 305 310
315 320 Ser Cys Ala Ser Glu Leu Gly Phe Leu Val
Phe Ser Leu Ala Met Ala 325 330
335 Ile Ile Ile Phe Ala Thr Val Met Phe Tyr Ala Glu Lys Asn Val
Asn 340 345 350 Gly
Thr Asn Phe Thr Ser Ile Pro Ala Ala Phe Trp Tyr Thr Ile Val 355
360 365 Thr Met Thr Thr Leu Gly
Tyr Gly Asp Met Val Pro Glu Thr Ile Ala 370 375
380 Gly Lys Ile Val Gly Gly Val Cys Ser Leu Ser
Gly Val Leu Val Ile 385 390 395
400 Ala Leu Pro Val Pro Val Ile Val Ser Asn Phe Ser Arg Ile Tyr His
405 410 415 Gln Asn
Gln Arg Ala Asp Lys Arg Lys Ala Gln Arg Lys Ala Arg Leu 420
425 430 Ala Arg Ile Arg Ile Ala Lys
Ala Ser Ser Gly Ala Ala Phe Val Ser 435 440
445 Lys Lys Lys Ala Ala Glu Ala Arg Trp Ala Ala Gln
Glu Ser Gly Ile 450 455 460
Glu Leu Asp Asp Asn Tyr Arg Asp Glu Asp Ile Phe Glu Leu Gln His 465
470 475 480 His His Leu
Leu Arg Cys Leu Glu Lys Thr Thr Met 485
490 1121DNAArtificial sequencePrimer 11gccaccatgg cctcggtcgc c
211220DNAArtificial
sequencePrimer 12ctacatcgtt gtcttctcca
20131623DNASpodoptera eridania 13atggcgtccg tcgccgcttg
gctgcccttc gctcgagcag ccgccatcgg atgggttccc 60atagccacac acccactacc
gccaccccca gtccccaagg accggcgccg cgccgaagac 120gagaagctcc ttataaacgt
ctccggacga cgctttgaga catggcggaa caccctcgag 180aaataccccg actcgctcct
cggctccacc gagagagaat tcttctacga cgaggacagc 240agagagtatt tcttcgacag
agatccagat atattccgcc acatattaaa ctactacagg 300actggcaagt tgcactatcc
caaacacgag tgtctgacgg gttacgacga ggagttggct 360ttctttggga tcctacctga
tgtgatcgga gactgttgtt atgaggacta ccgtgatagg 420aaacgtgaga atgccgaaag
gctgatggac gataagttaa gtgaggcggg agatcagagc 480ctgcctcaac tgacagactt
gcggcagaag atgtggcgcg cgttcgagaa cccccacact 540tcgactgctg ctctggtatt
ttactatgtg actgggttct ttatcgcagt atcggtgatg 600gcgaacgtag tggagacagt
gccgtgcggc caccggcccg gccgcgctgg gaccctgcct 660tgtggcgagc gatacaaaat
cgtgttcttc tgcttagaca cagcgtgtgt gatgatattt 720accgcggagt acctactccg
actcttcgca gcgccggacc gctgcaagtt cgtgcgatcc 780gtgatgtcga tcatagacgt
ggtcgccatc cttccatact acattggact cgggatcacc 840gacaatgatg atgtctccgg
cgccttcgtg accctgagag tgttcagagt gttccgtatc 900ttcaagttct ccaggcactc
tcagggattg cggatcctgg ggtacacgtt gaagtcgtgc 960gccagtgagc tgggtttcct
ggtgttttcg ttggcgatgg ctataatcat cttcgccaca 1020gtcatgttct acgctgagaa
gaatgagcaa gatactaatt tcacatccat tcctgctgcc 1080ttctggtaca ccattgtgac
aatgacaacg ttggggtacg gtgacatggt accaggcacg 1140atagctggta agatcgtggg
aggagtgtgc tccctctccg gagtgctggt gatagccctc 1200cctgtgcccg tcatcgtgtc
taacttctca agaatctacc atcagaatca gcgcgctgac 1260aagagaaagg ctcaaaggaa
agcccgtctc gcgcggatcc gcatcgccaa agcctcatct 1320ggggccgcat tcgtgtcaaa
gaagaaggca gcagaagctc gactggctgc gcaggagtcg 1380ggcgtagaac tagacgatgc
tggaagagac gaggacattt tcgagttgca acaccaccac 1440ctactgcgct gtcttgagcg
cactacggtg ggtgaagtta gaccacatcc attatctaac 1500gctttaattc cgtggcatgt
ttggactttc atgtcatgtc ggtgtggtgt tgtgttagta 1560gttctagact ctttttattg
tatcgacgtt tgtatgtctg ttcgttcgtt tagtaaagcg 1620tga
162314540PRTSpodoptera
eridania 14Met Ala Ser Val Ala Ala Trp Leu Pro Phe Ala Arg Ala Ala Ala
Ile 1 5 10 15 Gly
Trp Val Pro Ile Ala Thr His Pro Leu Pro Pro Pro Pro Val Pro
20 25 30 Lys Asp Arg Arg Arg
Ala Glu Asp Glu Lys Leu Leu Ile Asn Val Ser 35
40 45 Gly Arg Arg Phe Glu Thr Trp Arg Asn
Thr Leu Glu Lys Tyr Pro Asp 50 55
60 Ser Leu Leu Gly Ser Thr Glu Arg Glu Phe Phe Tyr Asp
Glu Asp Ser 65 70 75
80 Arg Glu Tyr Phe Phe Asp Arg Asp Pro Asp Ile Phe Arg His Ile Leu
85 90 95 Asn Tyr Tyr Arg
Thr Gly Lys Leu His Tyr Pro Lys His Glu Cys Leu 100
105 110 Thr Gly Tyr Asp Glu Glu Leu Ala Phe
Phe Gly Ile Leu Pro Asp Val 115 120
125 Ile Gly Asp Cys Cys Tyr Glu Asp Tyr Arg Asp Arg Lys Arg
Glu Asn 130 135 140
Ala Glu Arg Leu Met Asp Asp Lys Leu Ser Glu Ala Gly Asp Gln Ser 145
150 155 160 Leu Pro Gln Leu Thr
Asp Leu Arg Gln Lys Met Trp Arg Ala Phe Glu 165
170 175 Asn Pro His Thr Ser Thr Ala Ala Leu Val
Phe Tyr Tyr Val Thr Gly 180 185
190 Phe Phe Ile Ala Val Ser Val Met Ala Asn Val Val Glu Thr Val
Pro 195 200 205 Cys
Gly His Arg Pro Gly Arg Ala Gly Thr Leu Pro Cys Gly Glu Arg 210
215 220 Tyr Lys Ile Val Phe Phe
Cys Leu Asp Thr Ala Cys Val Met Ile Phe 225 230
235 240 Thr Ala Glu Tyr Leu Leu Arg Leu Phe Ala Ala
Pro Asp Arg Cys Lys 245 250
255 Phe Val Arg Ser Val Met Ser Ile Ile Asp Val Val Ala Ile Leu Pro
260 265 270 Tyr Tyr
Ile Gly Leu Gly Ile Thr Asp Asn Asp Asp Val Ser Gly Ala 275
280 285 Phe Val Thr Leu Arg Val Phe
Arg Val Phe Arg Ile Phe Lys Phe Ser 290 295
300 Arg His Ser Gln Gly Leu Arg Ile Leu Gly Tyr Thr
Leu Lys Ser Cys 305 310 315
320 Ala Ser Glu Leu Gly Phe Leu Val Phe Ser Leu Ala Met Ala Ile Ile
325 330 335 Ile Phe Ala
Thr Val Met Phe Tyr Ala Glu Lys Asn Glu Gln Asp Thr 340
345 350 Asn Phe Thr Ser Ile Pro Ala Ala
Phe Trp Tyr Thr Ile Val Thr Met 355 360
365 Thr Thr Leu Gly Tyr Gly Asp Met Val Pro Gly Thr Ile
Ala Gly Lys 370 375 380
Ile Val Gly Gly Val Cys Ser Leu Ser Gly Val Leu Val Ile Ala Leu 385
390 395 400 Pro Val Pro Val
Ile Val Ser Asn Phe Ser Arg Ile Tyr His Gln Asn 405
410 415 Gln Arg Ala Asp Lys Arg Lys Ala Gln
Arg Lys Ala Arg Leu Ala Arg 420 425
430 Ile Arg Ile Ala Lys Ala Ser Ser Gly Ala Ala Phe Val Ser
Lys Lys 435 440 445
Lys Ala Ala Glu Ala Arg Leu Ala Ala Gln Glu Ser Gly Val Glu Leu 450
455 460 Asp Asp Ala Gly Arg
Asp Glu Asp Ile Phe Glu Leu Gln His His His 465 470
475 480 Leu Leu Arg Cys Leu Glu Arg Thr Thr Val
Gly Glu Val Arg Pro His 485 490
495 Pro Leu Ser Asn Ala Leu Ile Pro Trp His Val Trp Thr Phe Met
Ser 500 505 510 Cys
Arg Cys Gly Val Val Leu Val Val Leu Asp Ser Phe Tyr Cys Ile 515
520 525 Asp Val Cys Met Ser Val
Arg Ser Phe Ser Lys Ala 530 535 540
1530DNAArtificial sequencePrimer 15gccaccatgg cgtccgtcgc cgcttggctg
301623DNAArtificial sequencePrimer
16tcacgcttta ctaaacgaac gaa
23171722DNATribolium castaneum 17gccaccatgg cctcggtcgc cgcttggctg
ccatttgccc gggcggcggc catcggctgg 60gtgcccatcg ccacgcaccc gctcccgccg
ccgccgatcc ccaaggatcg gcgcaaagcc 120gacgacgaga agctcctcat caacgtctcg
ggacggcgct tcgaaacgtg gcggaacacc 180ctcgagaagt accccgacac gctgctcggc
tccaacgagc gcgagttctt ctacgacgag 240gagtgcaaag agtacttttt tgaccgagat
ccggacatct tccggcacat cctcaactac 300taccgcactg gcaagctgca ctatcccaag
cacgagtgcc tcaccagcta cgatgaagag 360ctggctttct tcgggatctt gccggacgtt
atcggggact gctgctacga ggactacaga 420gaccgcaaac gtgagaacgc cgaaagactc
atggacgata aactttccga aaacggtgac 480caaaatctgc agcaactgac caacatacga
cagaaaatgt ggcgcgcctt cgaaaatcca 540cacacttcaa cggcggccct agtcttctat
tacgttacag gcttcttcat tgctgtttct 600gtgatggcga atgtagtaga gacggttcct
tgcggaagcc gcccgggggg agctggctcc 660ttaccgtgcg gcgaaagata caaaattgca
ttctcctgct tagacaccgc ttgtgttatg 720attttcacag ctgaatattt attacggatg
tttgcagccc cgaaccgata caaatttgtt 780cgctccgtga tgagcattat cgatgtcgtg
gccattctac cttattacat cggcctgggc 840atcaccgaca acgatgatgt ttccggtgct
tttgttaccc tgcgagtctt ccgcgttttc 900agaattttca aattctcacg tcactcccaa
ggtctccgca tcttgggtta cactctcaaa 960tcgtgcgctt ccgaacttgg ttttctcgta
ttttcactag ccatggctat tatcatcttc 1020gctaccgtaa tgttctacgc cgaaaagaac
gtcggcaaaa caaatttcac ttccatccct 1080gctgccttct ggtacaccat cgtcacgatg
actacgctag gttacggcga catggttccg 1140gccactatcg caggaaaaat cgttggcggc
gtctgctccc tgagtggtgt ccttgtgatc 1200gcactacccg tacctgttat cgtttccaac
ttcagcagga tctaccacca gaaccaaagg 1260gccgacaagc gcaaagctca aagaaaggct
cgcttggcgc gcatccgcat cgccaaagcg 1320tcgtcggggg cggcgttcgt cagcaagaag
aaggcggcgg aggcccgcct ggccgcccaa 1380gagtcgggca tcgagctcga cgacaactac
cgcgaggaag acattttcga gctgcagcac 1440caccacttgc tgcggtgtct ggagaagacc
accgaccgcg agttcgtgga gctggaggtg 1500ccgtacaacg gccaccccaa gcggcccggc
tcgccgtcgc ccatggccag ccctgcccac 1560tcggccgtct ccatcggcct gatccagtcc
tgctgcggcc gctgctgccc ccgcaggtac 1620cagcaggcct gcgggaagta catgccggcg
gcctcggcgg cgcagtcgaa ccaaactggc 1680ggcggtatgg acggcaccta tctcgtggag
gcgtcatttt ag 172218573PRTTribolium castaneum 18Ala
Thr Met Ala Ser Val Ala Ala Trp Leu Pro Phe Ala Arg Ala Ala 1
5 10 15 Ala Ile Gly Trp Val Pro
Ile Ala Thr His Pro Leu Pro Pro Pro Pro 20
25 30 Ile Pro Lys Asp Arg Arg Lys Ala Asp Asp
Glu Lys Leu Leu Ile Asn 35 40
45 Val Ser Gly Arg Arg Phe Glu Thr Trp Arg Asn Thr Leu Glu
Lys Tyr 50 55 60
Pro Asp Thr Leu Leu Gly Ser Asn Glu Arg Glu Phe Phe Tyr Asp Glu 65
70 75 80 Glu Cys Lys Glu Tyr
Phe Phe Asp Arg Asp Pro Asp Ile Phe Arg His 85
90 95 Ile Leu Asn Tyr Tyr Arg Thr Gly Lys Leu
His Tyr Pro Lys His Glu 100 105
110 Cys Leu Thr Ser Tyr Asp Glu Glu Leu Ala Phe Phe Gly Ile Leu
Pro 115 120 125 Asp
Val Ile Gly Asp Cys Cys Tyr Glu Asp Tyr Arg Asp Arg Lys Arg 130
135 140 Glu Asn Ala Glu Arg Leu
Met Asp Asp Lys Leu Ser Glu Asn Gly Asp 145 150
155 160 Gln Asn Leu Gln Gln Leu Thr Asn Ile Arg Gln
Lys Met Trp Arg Ala 165 170
175 Phe Glu Asn Pro His Thr Ser Thr Ala Ala Leu Val Phe Tyr Tyr Val
180 185 190 Thr Gly
Phe Phe Ile Ala Val Ser Val Met Ala Asn Val Val Glu Thr 195
200 205 Val Pro Cys Gly Ser Arg Pro
Gly Gly Ala Gly Ser Leu Pro Cys Gly 210 215
220 Glu Arg Tyr Lys Ile Ala Phe Ser Cys Leu Asp Thr
Ala Cys Val Met 225 230 235
240 Ile Phe Thr Ala Glu Tyr Leu Leu Arg Met Phe Ala Ala Pro Asn Arg
245 250 255 Tyr Lys Phe
Val Arg Ser Val Met Ser Ile Ile Asp Val Val Ala Ile 260
265 270 Leu Pro Tyr Tyr Ile Gly Leu Gly
Ile Thr Asp Asn Asp Asp Val Ser 275 280
285 Gly Ala Phe Val Thr Leu Arg Val Phe Arg Val Phe Arg
Ile Phe Lys 290 295 300
Phe Ser Arg His Ser Gln Gly Leu Arg Ile Leu Gly Tyr Thr Leu Lys 305
310 315 320 Ser Cys Ala Ser
Glu Leu Gly Phe Leu Val Phe Ser Leu Ala Met Ala 325
330 335 Ile Ile Ile Phe Ala Thr Val Met Phe
Tyr Ala Glu Lys Asn Val Gly 340 345
350 Lys Thr Asn Phe Thr Ser Ile Pro Ala Ala Phe Trp Tyr Thr
Ile Val 355 360 365
Thr Met Thr Thr Leu Gly Tyr Gly Asp Met Val Pro Ala Thr Ile Ala 370
375 380 Gly Lys Ile Val Gly
Gly Val Cys Ser Leu Ser Gly Val Leu Val Ile 385 390
395 400 Ala Leu Pro Val Pro Val Ile Val Ser Asn
Phe Ser Arg Ile Tyr His 405 410
415 Gln Asn Gln Arg Ala Asp Lys Arg Lys Ala Gln Arg Lys Ala Arg
Leu 420 425 430 Ala
Arg Ile Arg Ile Ala Lys Ala Ser Ser Gly Ala Ala Phe Val Ser 435
440 445 Lys Lys Lys Ala Ala Glu
Ala Arg Leu Ala Ala Gln Glu Ser Gly Ile 450 455
460 Glu Leu Asp Asp Asn Tyr Arg Glu Glu Asp Ile
Phe Glu Leu Gln His 465 470 475
480 His His Leu Leu Arg Cys Leu Glu Lys Thr Thr Asp Arg Glu Phe Val
485 490 495 Glu Leu
Glu Val Pro Tyr Asn Gly His Pro Lys Arg Pro Gly Ser Pro 500
505 510 Ser Pro Met Ala Ser Pro Ala
His Ser Ala Val Ser Ile Gly Leu Ile 515 520
525 Gln Ser Cys Cys Gly Arg Cys Cys Pro Arg Arg Tyr
Gln Gln Ala Cys 530 535 540
Gly Lys Tyr Met Pro Ala Ala Ser Ala Ala Gln Ser Asn Gln Thr Gly 545
550 555 560 Gly Gly Met
Asp Gly Thr Tyr Leu Val Glu Ala Ser Phe 565
570 1930DNAArtificial sequencePrimer 19gccaccatgg
cctcggtcgc cgcttggctg
302035DNAArtificial sequencePrimer 20ctaaaatgac gcctccacga gataggtgcc
gtcca 35211665DNANilaparvata lugens
21atggcctcgg tcaccgcttg gctgccgttt gcccgggcgg cggccatcgg ctgggtgccc
60attgccagcc atcccctgcc tcctccgccc gtgcccaagg accgtcgcaa ggctgatgac
120gagaaactgc ttatcaacgt gtctggtcgt cgcttcgaga cttggcgtaa cacgctcgaa
180aagtatcctg acactttgct cggctccaat gagcgcgaat ttttcttcga cgaagaatgc
240aaagagtact tcttcgaccg cgatcctgac atatttcgac acatcctcaa ctactaccgc
300accggcaagt tgcattatcc gaagcatgag tgcctgacga gctatgatga ggagctggcc
360ttcttcggta ttctgcccga tgtgattggt gactgctgct atgaggacta ccgagaccgc
420aagcgggaga acgccgaacg tctgatggac gacaagctct cggagaatgg cgatcagaat
480ctgccacagc tgaccgacat ccgacagaag atgtggagag ccttcgagaa cccacacacg
540tcgacagcgg cactggtgtt ctactatgtg acgggcttct tcatcgcggt gtcagtgatg
600gcaaacgtgg tggagacggt gccgtgtggc caccgaccgg gtcgtgctgg cacgctaccc
660tgtggcgagc gctacaagat cgtgttcttc tgcttggaca cagcctgtgt gatgatcttc
720acagcagagt acttgctgcg actgttcgcc gctcccgacc gctgcaagtt cgtgcgtagc
780gtgatgtcga tcatcgacgt ggtggccatt ttgccgtact acattggcct cggcatcact
840gacaacgacg acgtgtctgg ggcttttgtc acgctgcgag tttttcgcgt gttcagaatt
900ttcaagttct cccgtcactc gcagggtctt cgaattctag gctacacact gaaatcgtgt
960gcttccgaac tcggcttcct cgtgttctcg ttggccatgg ccatcattat ttttgccacg
1020gtcatgttct acgcagaaaa gaatgtcgat ggcactaact tcacatcgat tccggccgcc
1080ttctggtaca ccattgtcac tatgaccacc ttggggtacg gagacatggt accagaaaca
1140atcgccggta aaatagtggg tggagtctgt tcattgtcag gagtgcttgt catagcattg
1200cccgtacctg ttattgtgtc caacttcagc agaatatacc accagaatca aagggctgac
1260aagcgcaaag ctcaaaggaa agcacgtctg gctcgcatca gaatcgcaaa agcgtcttct
1320ggagcggcct tcgtcagcaa aaagaaagca gctgaagcca gactggctgc tcaagagtcc
1380ggtatggaga tggacgagaa ctatcgcgaa gaggatatct tcgagttgca gcatcatcat
1440ttattacgct gcctagagaa gaccacggac agggagtttg tggagctgga ggtgccgtac
1500aatggtcagc cgaaaaggcc aggatcgcca tctccgctga tcagtccgac ccactcggcg
1560gggagtcgga cagggctgct tcactcctgc tgtggtcgct gctgtgggca acgttaccag
1620actgaccaag aggttccatc gagtatggag atggatgaat tatga
166522554PRTNilaparvata lugens 22Met Ala Ser Val Thr Ala Trp Leu Pro Phe
Ala Arg Ala Ala Ala Ile 1 5 10
15 Gly Trp Val Pro Ile Ala Ser His Pro Leu Pro Pro Pro Pro Val
Pro 20 25 30 Lys
Asp Arg Arg Lys Ala Asp Asp Glu Lys Leu Leu Ile Asn Val Ser 35
40 45 Gly Arg Arg Phe Glu Thr
Trp Arg Asn Thr Leu Glu Lys Tyr Pro Asp 50 55
60 Thr Leu Leu Gly Ser Asn Glu Arg Glu Phe Phe
Phe Asp Glu Glu Cys 65 70 75
80 Lys Glu Tyr Phe Phe Asp Arg Asp Pro Asp Ile Phe Arg His Ile Leu
85 90 95 Asn Tyr
Tyr Arg Thr Gly Lys Leu His Tyr Pro Lys His Glu Cys Leu 100
105 110 Thr Ser Tyr Asp Glu Glu Leu
Ala Phe Phe Gly Ile Leu Pro Asp Val 115 120
125 Ile Gly Asp Cys Cys Tyr Glu Asp Tyr Arg Asp Arg
Lys Arg Glu Asn 130 135 140
Ala Glu Arg Leu Met Asp Asp Lys Leu Ser Glu Asn Gly Asp Gln Asn 145
150 155 160 Leu Pro Gln
Leu Thr Asp Ile Arg Gln Lys Met Trp Arg Ala Phe Glu 165
170 175 Asn Pro His Thr Ser Thr Ala Ala
Leu Val Phe Tyr Tyr Val Thr Gly 180 185
190 Phe Phe Ile Ala Val Ser Val Met Ala Asn Val Val Glu
Thr Val Pro 195 200 205
Cys Gly His Arg Pro Gly Arg Ala Gly Thr Leu Pro Cys Gly Glu Arg 210
215 220 Tyr Lys Ile Val
Phe Phe Cys Leu Asp Thr Ala Cys Val Met Ile Phe 225 230
235 240 Thr Ala Glu Tyr Leu Leu Arg Leu Phe
Ala Ala Pro Asp Arg Cys Lys 245 250
255 Phe Val Arg Ser Val Met Ser Ile Ile Asp Val Val Ala Ile
Leu Pro 260 265 270
Tyr Tyr Ile Gly Leu Gly Ile Thr Asp Asn Asp Asp Val Ser Gly Ala
275 280 285 Phe Val Thr Leu
Arg Val Phe Arg Val Phe Arg Ile Phe Lys Phe Ser 290
295 300 Arg His Ser Gln Gly Leu Arg Ile
Leu Gly Tyr Thr Leu Lys Ser Cys 305 310
315 320 Ala Ser Glu Leu Gly Phe Leu Val Phe Ser Leu Ala
Met Ala Ile Ile 325 330
335 Ile Phe Ala Thr Val Met Phe Tyr Ala Glu Lys Asn Val Asp Gly Thr
340 345 350 Asn Phe Thr
Ser Ile Pro Ala Ala Phe Trp Tyr Thr Ile Val Thr Met 355
360 365 Thr Thr Leu Gly Tyr Gly Asp Met
Val Pro Glu Thr Ile Ala Gly Lys 370 375
380 Ile Val Gly Gly Val Cys Ser Leu Ser Gly Val Leu Val
Ile Ala Leu 385 390 395
400 Pro Val Pro Val Ile Val Ser Asn Phe Ser Arg Ile Tyr His Gln Asn
405 410 415 Gln Arg Ala Asp
Lys Arg Lys Ala Gln Arg Lys Ala Arg Leu Ala Arg 420
425 430 Ile Arg Ile Ala Lys Ala Ser Ser Gly
Ala Ala Phe Val Ser Lys Lys 435 440
445 Lys Ala Ala Glu Ala Arg Leu Ala Ala Gln Glu Ser Gly Met
Glu Met 450 455 460
Asp Glu Asn Tyr Arg Glu Glu Asp Ile Phe Glu Leu Gln His His His 465
470 475 480 Leu Leu Arg Cys Leu
Glu Lys Thr Thr Asp Arg Glu Phe Val Glu Leu 485
490 495 Glu Val Pro Tyr Asn Gly Gln Pro Lys Arg
Pro Gly Ser Pro Ser Pro 500 505
510 Leu Ile Ser Pro Thr His Ser Ala Gly Ser Arg Thr Gly Leu Leu
His 515 520 525 Ser
Cys Cys Gly Arg Cys Cys Gly Gln Arg Tyr Gln Thr Asp Gln Glu 530
535 540 Val Pro Ser Ser Met Glu
Met Asp Glu Leu 545 550 2324DNAArtificial
sequencePrimer 23gccaccatgg cctcggtcac cgct
242440DNAArtificial sequencePrimer 24tcataattca tccatctcca
tactcgatgg aacctcttgg 4025621DNADrosophila
melanogaster 25atggcctcac caccggagag tcccatcgag gaggtggtct atgagttgga
acacacacga 60gtgcctaagc ccattcccgt tgccctcgag gatctgtgcc ggcagaccaa
gttcaccaaa 120caggaaatcc gcgtcatgta cagaggattc aaaacggaat gccccgaggg
cgtggtacac 180gaggattgtt ttaaggatat ctacgccaaa ttctttccac atggcaattc
aagtttatac 240gctcattatg tgttcaaagc gttcgatgtt aattgcaatg gcgccattag
ttttcgggat 300ttactggtca ccttgtcgac cttgctgaga ggttctgtat atgagcgtct
gcgttggacc 360ttcaagttgt acgatctgaa cggcgacgga aggatcagtc gcggcgaact
gagtgaaatt 420attttggcca ttcacgagct tatgggtcgg agaccacatc aacctgagga
cgatcgcaag 480gcgagggatc aggttgatcg tgtgtttcgc aaactggact tgaaccaaga
tggcattata 540acgatagagg agtttttgga ggcctgcctg aaggacgact tggtaactcg
atcgctgcaa 600atgttcgaca acgacctttg a
62126206PRTDrosophila melanogaster 26Met Ala Ser Pro Pro Glu
Ser Pro Ile Glu Glu Val Val Tyr Glu Leu 1 5
10 15 Glu His Thr Arg Val Pro Lys Pro Ile Pro Val
Ala Leu Glu Asp Leu 20 25
30 Cys Arg Gln Thr Lys Phe Thr Lys Gln Glu Ile Arg Val Met Tyr
Arg 35 40 45 Gly
Phe Lys Thr Glu Cys Pro Glu Gly Val Val His Glu Asp Cys Phe 50
55 60 Lys Asp Ile Tyr Ala Lys
Phe Phe Pro His Gly Asn Ser Ser Leu Tyr 65 70
75 80 Ala His Tyr Val Phe Lys Ala Phe Asp Val Asn
Cys Asn Gly Ala Ile 85 90
95 Ser Phe Arg Asp Leu Leu Val Thr Leu Ser Thr Leu Leu Arg Gly Ser
100 105 110 Val Tyr
Glu Arg Leu Arg Trp Thr Phe Lys Leu Tyr Asp Leu Asn Gly 115
120 125 Asp Gly Arg Ile Ser Arg Gly
Glu Leu Ser Glu Ile Ile Leu Ala Ile 130 135
140 His Glu Leu Met Gly Arg Arg Pro His Gln Pro Glu
Asp Asp Arg Lys 145 150 155
160 Ala Arg Asp Gln Val Asp Arg Val Phe Arg Lys Leu Asp Leu Asn Gln
165 170 175 Asp Gly Ile
Ile Thr Ile Glu Glu Phe Leu Glu Ala Cys Leu Lys Asp 180
185 190 Asp Leu Val Thr Arg Ser Leu Gln
Met Phe Asp Asn Asp Leu 195 200
205 2727DNAArtificial sequencePrimer 27atggcctcac caccggagag tcccatc
272831DNAArtificial sequencePrimer
28tcaaaggtcg ttgtcgaaca tttgcagcga t
3129627DNATribolium castaneum 29gccaccatgg caacgccgtc agacagccct
atcgaggagg tcgtgttcga gatagagccg 60tccagggtgc ccaagcccgt gcctgttgcc
ctagaggacc tctgcaggct caccaagttc 120acacgacagg aaattagaat catgtatcga
ggattcaaaa cggaatgtcc agagggtgtt 180gtccatgaag atagctttaa agaaatttat
tcgaaatttt ttccacatgg aaattcgagt 240ttgtatgcac actacgtgtt caaagccttc
gatgtcaact gcaacggagc aattagtttc 300agggacctgc tgataacctt atcgacgttg
ctccgcggtt cggtgtacga gcgcctccga 360tggaccttca aactgtatga cgtgaacggt
gacggctgca tcagccgcgg cgaactgtcc 420gaaatcgtgg tggcggtgca cgaactcatg
gggcggcgcg cccaccaggt ggaggacgac 480cgcaaggccc gcgagcaaat cgaccgagtc
ttccggaagc tggacctcaa ccaggacggc 540gtcatcacca tcgaggagtt catggaatcg
tgcctcaaag acgatgtgat cactaggtct 600ctgcagatgt tcgactcagt gctgtga
62730206PRTTribolium castaneum 30Met
Ala Thr Pro Ser Asp Ser Pro Ile Glu Glu Val Val Phe Glu Ile 1
5 10 15 Glu Pro Ser Arg Val Pro
Lys Pro Val Pro Val Ala Leu Glu Asp Leu 20
25 30 Cys Arg Leu Thr Lys Phe Thr Arg Gln Glu
Ile Arg Ile Met Tyr Arg 35 40
45 Gly Phe Lys Thr Glu Cys Pro Glu Gly Val Val His Glu Asp
Ser Phe 50 55 60
Lys Glu Ile Tyr Ser Lys Phe Phe Pro His Gly Asn Ser Ser Leu Tyr 65
70 75 80 Ala His Tyr Val Phe
Lys Ala Phe Asp Val Asn Cys Asn Gly Ala Ile 85
90 95 Ser Phe Arg Asp Leu Leu Ile Thr Leu Ser
Thr Leu Leu Arg Gly Ser 100 105
110 Val Tyr Glu Arg Leu Arg Trp Thr Phe Lys Leu Tyr Asp Val Asn
Gly 115 120 125 Asp
Gly Cys Ile Ser Arg Gly Glu Leu Ser Glu Ile Val Val Ala Val 130
135 140 His Glu Leu Met Gly Arg
Arg Ala His Gln Val Glu Asp Asp Arg Lys 145 150
155 160 Ala Arg Glu Gln Ile Asp Arg Val Phe Arg Lys
Leu Asp Leu Asn Gln 165 170
175 Asp Gly Val Ile Thr Ile Glu Glu Phe Met Glu Ser Cys Leu Lys Asp
180 185 190 Asp Val
Ile Thr Arg Ser Leu Gln Met Phe Asp Ser Val Leu 195
200 205 3137DNAArtificial sequencePrimer
31gccaccatgg caacgccgtc agacagccct atcgagg
373240DNAArtificial sequencePrimer 32tcacagcact gagtcgaaca tctgcagaga
cctagtgatc 4033491PRTArtificial
sequenceConsensus 33Xaa Xaa Met Ala Ser Val Xaa Ala Trp Leu Pro Phe Ala
Arg Ala Ala 1 5 10 15
Ala Ile Gly Trp Val Pro Ile Ala Xaa His Pro Leu Pro Pro Pro Pro
20 25 30 Xaa Pro Lys Asp
Arg Arg Xaa Xaa Xaa Asp Glu Lys Leu Leu Ile Asn 35
40 45 Val Ser Gly Arg Arg Phe Glu Thr Trp
Arg Asn Thr Leu Glu Lys Tyr 50 55
60 Pro Asp Xaa Leu Leu Gly Ser Xaa Glu Arg Glu Phe Phe
Xaa Asp Glu 65 70 75
80 Xaa Xaa Xaa Glu Tyr Phe Phe Asp Arg Asp Pro Asp Ile Phe Arg His
85 90 95 Ile Leu Asn Tyr
Tyr Arg Thr Gly Lys Leu His Tyr Pro Lys His Glu 100
105 110 Cys Leu Thr Xaa Tyr Asp Glu Glu Leu
Ala Phe Phe Gly Ile Xaa Pro 115 120
125 Asp Val Ile Gly Asp Cys Cys Tyr Glu Asp Tyr Arg Asp Arg
Lys Arg 130 135 140
Glu Asn Ala Glu Arg Leu Met Asp Asp Lys Leu Ser Glu Xaa Gly Asp 145
150 155 160 Gln Xaa Leu Xaa Gln
Leu Thr Xaa Xaa Arg Gln Lys Met Trp Arg Ala 165
170 175 Phe Glu Asn Pro His Thr Ser Thr Xaa Ala
Leu Val Phe Tyr Tyr Val 180 185
190 Thr Gly Phe Phe Ile Ala Val Ser Val Met Ala Asn Val Val Glu
Thr 195 200 205 Val
Pro Cys Gly Xaa Arg Pro Gly Xaa Ala Gly Xaa Leu Pro Cys Gly 210
215 220 Glu Arg Tyr Lys Ile Xaa
Phe Xaa Cys Leu Asp Thr Ala Cys Val Met 225 230
235 240 Ile Phe Thr Ala Glu Tyr Leu Leu Arg Xaa Phe
Ala Ala Pro Xaa Arg 245 250
255 Xaa Lys Phe Val Arg Ser Val Met Ser Ile Ile Asp Val Val Ala Ile
260 265 270 Xaa Pro
Tyr Tyr Ile Gly Leu Gly Ile Thr Asp Asn Asp Asp Val Ser 275
280 285 Gly Ala Phe Val Thr Leu Arg
Val Phe Arg Val Phe Arg Ile Phe Lys 290 295
300 Phe Ser Arg His Ser Gln Gly Leu Arg Ile Leu Gly
Tyr Thr Leu Lys 305 310 315
320 Ser Cys Ala Ser Glu Leu Gly Phe Leu Val Phe Ser Leu Ala Met Ala
325 330 335 Ile Ile Ile
Phe Ala Thr Val Met Phe Tyr Ala Glu Lys Asn Xaa Xaa 340
345 350 Xaa Thr Asn Phe Thr Ser Ile Pro
Ala Ala Phe Trp Tyr Thr Ile Val 355 360
365 Thr Met Thr Thr Leu Gly Tyr Gly Asp Met Val Pro Xaa
Thr Ile Ala 370 375 380
Gly Lys Ile Val Gly Gly Val Cys Ser Leu Ser Gly Val Leu Val Ile 385
390 395 400 Ala Leu Pro Val
Pro Val Ile Val Ser Asn Phe Ser Arg Ile Tyr His 405
410 415 Gln Asn Gln Arg Ala Asp Lys Arg Lys
Ala Gln Arg Lys Ala Arg Leu 420 425
430 Ala Arg Ile Arg Ile Ala Lys Ala Ser Ser Gly Ala Ala Phe
Val Ser 435 440 445
Lys Lys Lys Ala Ala Glu Ala Arg Xaa Ala Ala Gln Glu Ser Gly Xaa 450
455 460 Glu Xaa Asp Xaa Xaa
Xaa Arg Xaa Glu Asp Ile Phe Glu Leu Gln His 465 470
475 480 His His Leu Leu Arg Cys Leu Glu Xaa Thr
Thr 485 490 34206PRTArtificial
sequenceConsensus 34Met Ala Xaa Pro Xaa Xaa Ser Pro Ile Glu Glu Val Val
Xaa Glu Xaa 1 5 10 15
Glu Xaa Xaa Arg Val Pro Lys Pro Xaa Pro Val Ala Leu Glu Asp Leu
20 25 30 Cys Arg Xaa Thr
Lys Phe Thr Xaa Gln Glu Ile Arg Xaa Met Tyr Arg 35
40 45 Gly Phe Lys Thr Glu Cys Pro Glu Gly
Val Val His Glu Asp Xaa Phe 50 55
60 Lys Xaa Ile Tyr Xaa Lys Phe Phe Pro His Gly Asn Ser
Ser Leu Tyr 65 70 75
80 Ala His Tyr Val Phe Lys Ala Phe Asp Val Asn Cys Asn Gly Ala Ile
85 90 95 Ser Phe Arg Asp
Leu Leu Xaa Thr Leu Ser Thr Leu Leu Arg Gly Ser 100
105 110 Val Tyr Glu Arg Leu Arg Trp Thr Phe
Lys Leu Tyr Asp Xaa Asn Gly 115 120
125 Asp Gly Xaa Ile Ser Arg Gly Glu Leu Ser Glu Ile Xaa Xaa
Ala Xaa 130 135 140
His Glu Leu Met Gly Arg Arg Xaa His Gln Xaa Glu Asp Asp Arg Lys 145
150 155 160 Ala Arg Xaa Gln Xaa
Asp Arg Val Phe Arg Lys Leu Asp Leu Asn Gln 165
170 175 Asp Gly Xaa Ile Thr Ile Glu Glu Phe Xaa
Glu Xaa Cys Leu Lys Asp 180 185
190 Asp Xaa Xaa Thr Arg Ser Leu Gln Met Phe Asp Xaa Xaa Leu
195 200 205 354PRTArtificial
sequenceMotif 35Met Ala Ser Val 1 3617PRTArtificial
sequenceMotif 36Ala Trp Leu Pro Phe Ala Arg Ala Ala Ala Ile Gly Trp Val
Pro Ile 1 5 10 15
Ala 377PRTArtificial sequenceMotif 37His Pro Leu Pro Pro Pro Pro 1
5 385PRTArtificial sequenceMotif 38Pro Lys Asp Arg Arg 1
5 3925PRTArtificial sequenceMotif 39Asp Glu Lys Leu Leu
Ile Asn Val Ser Gly Arg Arg Phe Glu Thr Trp 1 5
10 15 Arg Asn Thr Leu Glu Lys Tyr Pro Asp
20 25 404PRTArtificial sequenceMotif 40Leu Leu
Gly Ser 1 415PRTArtificial sequenceMotif 41Glu Arg Glu Phe
Phe 1 5 4232PRTArtificial sequenceMotif 42Glu Tyr Phe Phe
Asp Arg Asp Pro Asp Ile Phe Arg His Ile Leu Asn 1 5
10 15 Tyr Tyr Arg Thr Gly Lys Leu His Tyr
Pro Lys His Glu Cys Leu Thr 20 25
30 4310PRTArtificial sequenceMotif 43Tyr Asp Glu Glu Leu
Ala Phe Phe Gly Ile 1 5 10
4430PRTArtificial sequenceMotif 44Pro Asp Val Ile Gly Asp Cys Cys Tyr Glu
Asp Tyr Arg Asp Arg Lys 1 5 10
15 Arg Glu Asn Ala Glu Arg Leu Met Asp Asp Lys Leu Ser Glu
20 25 30 4515PRTArtificial
sequenceMotif 45Arg Gln Lys Met Trp Arg Ala Phe Glu Asn Pro His Thr Ser
Thr 1 5 10 15
4627PRTArtificial sequenceMotif 46Ala Leu Val Phe Tyr Tyr Val Thr Gly Phe
Phe Ile Ala Val Ser Val 1 5 10
15 Met Ala Asn Val Val Glu Thr Val Pro Cys Gly 20
25 479PRTArtificial sequenceMotif 47Leu Pro Cys
Gly Glu Arg Tyr Lys Ile 1 5
4817PRTArtificial sequenceMotif 48Cys Leu Asp Thr Ala Cys Val Met Ile Phe
Thr Ala Glu Tyr Leu Leu 1 5 10
15 Arg 494PRTArtificial sequenceMotif 49Phe Ala Ala Pro 1
5015PRTArtificial sequenceMotif 50Lys Phe Val Arg Ser Val Met
Ser Ile Ile Asp Val Val Ala Ile 1 5 10
15 5177PRTArtificial sequenceMotif 51Pro Tyr Tyr Ile Gly
Leu Gly Ile Thr Asp Asn Asp Asp Val Ser Gly 1 5
10 15 Ala Phe Val Thr Leu Arg Val Phe Arg Val
Phe Arg Ile Phe Lys Phe 20 25
30 Ser Arg His Ser Gln Gly Leu Arg Ile Leu Gly Tyr Thr Leu Lys
Ser 35 40 45 Cys
Ala Ser Glu Leu Gly Phe Leu Val Phe Ser Leu Ala Met Ala Ile 50
55 60 Ile Ile Phe Ala Thr Val
Met Phe Tyr Ala Glu Lys Asn 65 70 75
5227PRTArtificial sequenceMotif 52Thr Asn Phe Thr Ser Ile Pro Ala
Ala Phe Trp Tyr Thr Ile Val Thr 1 5 10
15 Met Thr Thr Leu Gly Tyr Gly Asp Met Val Pro
20 25 5375PRTArtificial sequenceMotif 53Thr
Ile Ala Gly Lys Ile Val Gly Gly Val Cys Ser Leu Ser Gly Val 1
5 10 15 Leu Val Ile Ala Leu Pro
Val Pro Val Ile Val Ser Asn Phe Ser Arg 20
25 30 Ile Tyr His Gln Asn Gln Arg Ala Asp Lys
Arg Lys Ala Gln Arg Lys 35 40
45 Ala Arg Leu Ala Arg Ile Arg Ile Ala Lys Ala Ser Ser Gly
Ala Ala 50 55 60
Phe Val Ser Lys Lys Lys Ala Ala Glu Ala Arg 65 70
75 546PRTArtificial sequenceMotif 54Ala Ala Gln Glu Ser Gly 1
5 5516PRTArtificial sequenceMotif 55Glu Asp Ile Phe
Glu Leu Gln His His His Leu Leu Arg Cys Leu Glu 1 5
10 15 567PRTArtificial sequenceMotif
56Ser Pro Ile Glu Glu Val Val 1 5
575PRTArtificial sequenceMotif 57Arg Val Pro Lys Pro 1 5
589PRTArtificial sequenceMotif 58Pro Val Ala Leu Glu Asp Leu Cys Arg 1
5 594PRTArtificial sequenceMotif 59Thr Lys
Phe Thr 1 604PRTArtificial sequenceMotif 60Gln Glu Ile Arg
1 6117PRTArtificial sequenceMotif 61Met Tyr Arg Gly Phe Lys
Thr Glu Cys Pro Glu Gly Val Val His Glu 1 5
10 15 Asp 6233PRTArtificial sequenceMotif 62Lys
Phe Phe Pro His Gly Asn Ser Ser Leu Tyr Ala His Tyr Val Phe 1
5 10 15 Lys Ala Phe Asp Val Asn
Cys Asn Gly Ala Ile Ser Phe Arg Asp Leu 20
25 30 Leu 6322PRTArtificial sequenceMotif 63Thr
Leu Ser Thr Leu Leu Arg Gly Ser Val Tyr Glu Arg Leu Arg Trp 1
5 10 15 Thr Phe Lys Leu Tyr Asp
20 644PRTArtificial sequenceMotif 64Asn Gly Asp Gly
1 659PRTArtificial sequenceMotif 65Ile Ser Arg Gly Glu Leu
Ser Glu Ile 1 5 667PRTArtificial
sequenceMotif 66His Glu Leu Met Gly Arg Arg 1 5
677PRTArtificial sequenceMotif 67Glu Asp Asp Arg Lys Ala Arg 1
5 6813PRTArtificial sequenceMotif 68Asp Arg Val Phe Arg Lys
Leu Asp Leu Asn Gln Asp Gly 1 5 10
696PRTArtificial sequenceMotif 69Ile Thr Ile Glu Glu Phe 1
5 705PRTArtificial sequenceMotif 70Cys Leu Lys Asp Asp 1
5 718PRTArtificial sequenceMotif 71Thr Arg Ser Leu Gln Met Phe
Asp 1 5 721971DNADrosophila melanogaster
72atggccgccg ttgccggcct ctatggcctt ggggaggatc gccagcaccg caagaagcag
60cagcaacagc agcagcacca gaaggagcag ctcgagcaga aggaggagca aaagaagatc
120gccgagcgga agctgcagct gcgggagcag cagctccagc gcaactccct cgatggttac
180gggtctttgc ccaaattgag cagtcaagac gaagaagggg gggctggtca tggctttggt
240ggcggaccgc aacactttga acccattcct cacgatcatg atttctgcga aagagtcgtt
300ataaatgtaa gcggattaag gtttgagaca caactacgta cgttaaatca attcccggac
360acgctgcttg gggatccagc tcggagatta cggtactttg acccgcttag aaatgaatat
420ttttttgacc gtagtcgacc gagcttcgat gcgattttat actattatca gagtggtggc
480cgactacgga gaccggtcaa tgtcccttta gacgtattta gtgaagaaat aaaattttat
540gaattaggtg atcaagcaat taataaattc agagaggatg aaggctttat taaagaggaa
600gaaagaccat taccggataa tgagaaacag agaaaagtct ggctgctctt cgagtatcca
660gaaagttcgc aagccgccag agttgtagcc ataattagtg tatttgttat attgctatca
720attgttatat tttgtctaga aacattaccc gaatttaagc attacaaggt gttcaataca
780acaacaaatg gcacaaaaat cgaggaagac gaggtgcctg acatcacaga tcctttcttc
840cttatagaaa cgttatgcat tatttggttt acatttgaac taactgtcag gttcctcgca
900tgtccgaaca aattaaattt ctgcagggat gtcatgaatg ttatcgacat aatcgccatc
960attccgtact ttataacact agcgactgtc gttgccgaag aggaggatac gttaaatctt
1020ccaaaagcgc cagtcagtcc acaggacaag tcatcgaatc aggctatgtc cttggcaata
1080ttacgagtga tacgattagt tcgagtattt cgaatattta agttatctag gcattcgaag
1140ggtttacaaa tattaggacg aactctgaaa gcctcaatgc gggaattagg tttacttata
1200tttttcttat ttataggcgt cgtactcttc tcatcggcgg tttattttgc ggaagctgga
1260agcgaaaatt ccttcttcaa gtccataccc gatgcatttt ggtgggcggt cgttaccatg
1320accaccgttg gatatggtga catgacaccc gtcggcgttt ggggcaagat tgtgggatca
1380ctttgtgcca ttgctggcgt gctgaccatc gcactgccgg tgccggtcat cgtcagcaat
1440ttcaactact tctatcaccg cgaaacggat caggaggaga tgcagagcca gaactttaat
1500cacgttacta gttgtccata tttgccaggt acattagtag gtcaacacat gaagaaatca
1560tcattgtctg agtcctcatc ggatatgatg gatttggacg atggtgtcga gtccacgccg
1620ggattgacag aaacacatcc tggacgcagt gcggtggctc catttttggg agcccagcag
1680cagcagcaac aaccggtagc atcctcactg tcgatgtcga tcgacaaaca actgcagcac
1740ccactgcagc agctgacgca gacgcaactg taccaacagc agcaacagca gcagcagcag
1800cagcaaaacg gcttcaagca gcagcagcaa cagacgcagc agcagctgca acagcaacag
1860tcccacacaa taaacgcaag tgcagcagcg gcgacgagcg gcagcggcag tagcggtctc
1920accatgaggc acaataatgc cctggccgtt agtatcgaga ccgacgtttg a
197173656PRTDrosophila melanogaster 73Met Ala Ala Val Ala Gly Leu Tyr Gly
Leu Gly Glu Asp Arg Gln His 1 5 10
15 Arg Lys Lys Gln Gln Gln Gln Gln Gln His Gln Lys Glu Gln
Leu Glu 20 25 30
Gln Lys Glu Glu Gln Lys Lys Ile Ala Glu Arg Lys Leu Gln Leu Arg
35 40 45 Glu Gln Gln Leu
Gln Arg Asn Ser Leu Asp Gly Tyr Gly Ser Leu Pro 50
55 60 Lys Leu Ser Ser Gln Asp Glu Glu
Gly Gly Ala Gly His Gly Phe Gly 65 70
75 80 Gly Gly Pro Gln His Phe Glu Pro Ile Pro His Asp
His Asp Phe Cys 85 90
95 Glu Arg Val Val Ile Asn Val Ser Gly Leu Arg Phe Glu Thr Gln Leu
100 105 110 Arg Thr Leu
Asn Gln Phe Pro Asp Thr Leu Leu Gly Asp Pro Ala Arg 115
120 125 Arg Leu Arg Tyr Phe Asp Pro Leu
Arg Asn Glu Tyr Phe Phe Asp Arg 130 135
140 Ser Arg Pro Ser Phe Asp Ala Ile Leu Tyr Tyr Tyr Gln
Ser Gly Gly 145 150 155
160 Arg Leu Arg Arg Pro Val Asn Val Pro Leu Asp Val Phe Ser Glu Glu
165 170 175 Ile Lys Phe Tyr
Glu Leu Gly Asp Gln Ala Ile Asn Lys Phe Arg Glu 180
185 190 Asp Glu Gly Phe Ile Lys Glu Glu Glu
Arg Pro Leu Pro Asp Asn Glu 195 200
205 Lys Gln Arg Lys Val Trp Leu Leu Phe Glu Tyr Pro Glu Ser
Ser Gln 210 215 220
Ala Ala Arg Val Val Ala Ile Ile Ser Val Phe Val Ile Leu Leu Ser 225
230 235 240 Ile Val Ile Phe Cys
Leu Glu Thr Leu Pro Glu Phe Lys His Tyr Lys 245
250 255 Val Phe Asn Thr Thr Thr Asn Gly Thr Lys
Ile Glu Glu Asp Glu Val 260 265
270 Pro Asp Ile Thr Asp Pro Phe Phe Leu Ile Glu Thr Leu Cys Ile
Ile 275 280 285 Trp
Phe Thr Phe Glu Leu Thr Val Arg Phe Leu Ala Cys Pro Asn Lys 290
295 300 Leu Asn Phe Cys Arg Asp
Val Met Asn Val Ile Asp Ile Ile Ala Ile 305 310
315 320 Ile Pro Tyr Phe Ile Thr Leu Ala Thr Val Val
Ala Glu Glu Glu Asp 325 330
335 Thr Leu Asn Leu Pro Lys Ala Pro Val Ser Pro Gln Asp Lys Ser Ser
340 345 350 Asn Gln
Ala Met Ser Leu Ala Ile Leu Arg Val Ile Arg Leu Val Arg 355
360 365 Val Phe Arg Ile Phe Lys Leu
Ser Arg His Ser Lys Gly Leu Gln Ile 370 375
380 Leu Gly Arg Thr Leu Lys Ala Ser Met Arg Glu Leu
Gly Leu Leu Ile 385 390 395
400 Phe Phe Leu Phe Ile Gly Val Val Leu Phe Ser Ser Ala Val Tyr Phe
405 410 415 Ala Glu Ala
Gly Ser Glu Asn Ser Phe Phe Lys Ser Ile Pro Asp Ala 420
425 430 Phe Trp Trp Ala Val Val Thr Met
Thr Thr Val Gly Tyr Gly Asp Met 435 440
445 Thr Pro Val Gly Val Trp Gly Lys Ile Val Gly Ser Leu
Cys Ala Ile 450 455 460
Ala Gly Val Leu Thr Ile Ala Leu Pro Val Pro Val Ile Val Ser Asn 465
470 475 480 Phe Asn Tyr Phe
Tyr His Arg Glu Thr Asp Gln Glu Glu Met Gln Ser 485
490 495 Gln Asn Phe Asn His Val Thr Ser Cys
Pro Tyr Leu Pro Gly Thr Leu 500 505
510 Val Gly Gln His Met Lys Lys Ser Ser Leu Ser Glu Ser Ser
Ser Asp 515 520 525
Met Met Asp Leu Asp Asp Gly Val Glu Ser Thr Pro Gly Leu Thr Glu 530
535 540 Thr His Pro Gly Arg
Ser Ala Val Ala Pro Phe Leu Gly Ala Gln Gln 545 550
555 560 Gln Gln Gln Gln Pro Val Ala Ser Ser Leu
Ser Met Ser Ile Asp Lys 565 570
575 Gln Leu Gln His Pro Leu Gln Gln Leu Thr Gln Thr Gln Leu Tyr
Gln 580 585 590 Gln
Gln Gln Gln Gln Gln Gln Gln Gln Gln Asn Gly Phe Lys Gln Gln 595
600 605 Gln Gln Gln Thr Gln Gln
Gln Leu Gln Gln Gln Gln Ser His Thr Ile 610 615
620 Asn Ala Ser Ala Ala Ala Ala Thr Ser Gly Ser
Gly Ser Ser Gly Leu 625 630 635
640 Thr Met Arg His Asn Asn Ala Leu Ala Val Ser Ile Glu Thr Asp Val
645 650 655
741497DNASpodoptera eridania 74atgttcgctg gcggaggtgc cggcttccag
aaacagtcaa agccgccgtg ggagagtacc 60aacaccagct ccggagcaga tatcccctac
aaccggtcac tgccaaaact gtgcaaccag 120gaagaggagc ctggacgtcc accccagggc
ggggtggtga cgttcgaacc catacaacac 180gatcacgact tctgcgaaag agttgttatc
aacgtaagtg gcctgaagtt tgagacccaa 240ctacgaacac tgaatcaatt cccggaaacc
ctactggggg acccaactcg gagaatacgc 300tacttcgatc ccttgaggaa cgaatacttt
tttgaccgca accgcccctc atttgacgca 360atcctgtact actaccaaag cggcggccgc
ctgcggcgcc ctgttaacgt tcccctagat 420gtcttctccg aggagattaa attctacgaa
ctcggagaac aagccacaaa caaattccgt 480gaggatgagg gcttcatcaa ggaagaggaa
aaaccccttc cgtccaacga gcgccagcgc 540aaaatttggt tgctcttcga atacccagag
agctctcagg ccgcacgtgt cgtggctatc 600atctccgtgt ttgtcattct cctgtctatc
gtcattttct gcctggagac cctgccagag 660ttcaaacact acaaggtctt caacaccacc
accaacggca ctaagatcga ggaagatgaa 720gtccctgata tcaccgatcc attcttcttg
atagagaccc tctgtattat atggtttacg 780ttcgagttga tagtacggtt tctggcgtgt
cccaacaagt tcaacttctt tagagatgtc 840atgaatatta tagacatcat cgccattatt
ccgtacttta tcaccctggc gacagtcgtg 900gcagaggagg aagatactct caacttaccg
cgtgccccag tgtctccgca agacaagtcg 960actaaccaag cgatgagtct ggccatactg
cgagtgatac gtctggtgcg tgtgttccgt 1020atcttcaaac tgtcgcgaca ctccaaagga
ttacagattt tgggtcgtac gttaaaagca 1080tcaatgaggg aacttggctt attgatattc
ttcttgttca ttggtgtggt gctgttttca 1140tccgcggtgt acttcgctga agcgggaagt
gagaacagct tcttcaaatc catacctgat 1200gcgttttggt gggcggtcgt gacaatgaca
actgtgggat acggagacat gacgcccgtt 1260ggagtatggg gaaagatcgt cggatccctg
tgtgctattg ccggagtgct caccattgca 1320ttgcctgttc ctgtcatcgt gtcgaacttc
aattacttct accatcggga gaccgaccag 1380gaggagatgc aatcgcagaa cttcaaccac
gtcaccagct gcccgtacct acctggcact 1440atgggcgagc cttacctcag tgggaaagaa
gatgacgagg tttgcagtga tcaatga 149775498PRTSpodoptera eridania 75Met
Phe Ala Gly Gly Gly Ala Gly Phe Gln Lys Gln Ser Lys Pro Pro 1
5 10 15 Trp Glu Ser Thr Asn Thr
Ser Ser Gly Ala Asp Ile Pro Tyr Asn Arg 20
25 30 Ser Leu Pro Lys Leu Cys Asn Gln Glu Glu
Glu Pro Gly Arg Pro Pro 35 40
45 Gln Gly Gly Val Val Thr Phe Glu Pro Ile Gln His Asp His
Asp Phe 50 55 60
Cys Glu Arg Val Val Ile Asn Val Ser Gly Leu Lys Phe Glu Thr Gln 65
70 75 80 Leu Arg Thr Leu Asn
Gln Phe Pro Glu Thr Leu Leu Gly Asp Pro Thr 85
90 95 Arg Arg Ile Arg Tyr Phe Asp Pro Leu Arg
Asn Glu Tyr Phe Phe Asp 100 105
110 Arg Asn Arg Pro Ser Phe Asp Ala Ile Leu Tyr Tyr Tyr Gln Ser
Gly 115 120 125 Gly
Arg Leu Arg Arg Pro Val Asn Val Pro Leu Asp Val Phe Ser Glu 130
135 140 Glu Ile Lys Phe Tyr Glu
Leu Gly Glu Gln Ala Thr Asn Lys Phe Arg 145 150
155 160 Glu Asp Glu Gly Phe Ile Lys Glu Glu Glu Lys
Pro Leu Pro Ser Asn 165 170
175 Glu Arg Gln Arg Lys Ile Trp Leu Leu Phe Glu Tyr Pro Glu Ser Ser
180 185 190 Gln Ala
Ala Arg Val Val Ala Ile Ile Ser Val Phe Val Ile Leu Leu 195
200 205 Ser Ile Val Ile Phe Cys Leu
Glu Thr Leu Pro Glu Phe Lys His Tyr 210 215
220 Lys Val Phe Asn Thr Thr Thr Asn Gly Thr Lys Ile
Glu Glu Asp Glu 225 230 235
240 Val Pro Asp Ile Thr Asp Pro Phe Phe Leu Ile Glu Thr Leu Cys Ile
245 250 255 Ile Trp Phe
Thr Phe Glu Leu Ile Val Arg Phe Leu Ala Cys Pro Asn 260
265 270 Lys Phe Asn Phe Phe Arg Asp Val
Met Asn Ile Ile Asp Ile Ile Ala 275 280
285 Ile Ile Pro Tyr Phe Ile Thr Leu Ala Thr Val Val Ala
Glu Glu Glu 290 295 300
Asp Thr Leu Asn Leu Pro Arg Ala Pro Val Ser Pro Gln Asp Lys Ser 305
310 315 320 Thr Asn Gln Ala
Met Ser Leu Ala Ile Leu Arg Val Ile Arg Leu Val 325
330 335 Arg Val Phe Arg Ile Phe Lys Leu Ser
Arg His Ser Lys Gly Leu Gln 340 345
350 Ile Leu Gly Arg Thr Leu Lys Ala Ser Met Arg Glu Leu Gly
Leu Leu 355 360 365
Ile Phe Phe Leu Phe Ile Gly Val Val Leu Phe Ser Ser Ala Val Tyr 370
375 380 Phe Ala Glu Ala Gly
Ser Glu Asn Ser Phe Phe Lys Ser Ile Pro Asp 385 390
395 400 Ala Phe Trp Trp Ala Val Val Thr Met Thr
Thr Val Gly Tyr Gly Asp 405 410
415 Met Thr Pro Val Gly Val Trp Gly Lys Ile Val Gly Ser Leu Cys
Ala 420 425 430 Ile
Ala Gly Val Leu Thr Ile Ala Leu Pro Val Pro Val Ile Val Ser 435
440 445 Asn Phe Asn Tyr Phe Tyr
His Arg Glu Thr Asp Gln Glu Glu Met Gln 450 455
460 Ser Gln Asn Phe Asn His Val Thr Ser Cys Pro
Tyr Leu Pro Gly Thr 465 470 475
480 Met Gly Glu Pro Tyr Leu Ser Gly Lys Glu Asp Asp Glu Val Cys Ser
485 490 495 Asp Gln
761656DNATribolium castaneum 76gccaccatga cgatgtggca gagtgggatg
ggggggcccg ggggcaagaa caacgcgtgg 60atgaagctga tggggatcgt ccacaaagag
cgccgacacc acgactccgg agccacttcc 120acagatcgca cacttagcca gtcgctgccc
aagctcagca gccaggaaga ggacgggcac 180accccccact cccagttcac tggcgtagcc
cactttgagc ccatcccgca cgaccacgac 240ttttgcgaaa gagttgtgat aaacgtcagc
ggcctccggt tcgagacgca acttagaacg 300ctaaatcagt ttcctgacac gctgctaggt
gatccagccc gccgcatccg ctacttcgac 360ccgcttcgca atgagtactt cttcgaccgc
aaccggccct ccttcgacgc catcctgtac 420tactaccaga gcggcggtcg gctccggcgg
cccgtcaacg tgccgctgga cgtcttctcc 480gaggagatca agttctacga gctgggggag
ctggcgatca acaagttccg cgaggacgag 540ggcttcatca aggaggagga gaagccgcya
ccctcgcacg agttccagcg caacgtgtgg 600ctgctgttcg agtacccgga gtcgtcgcag
gcggcgcgcg tcgtcgccat catctccgtg 660ttcgttatcc tgctctctat cgttattttc
tgcctggaga cgctgcccga gttcaagcac 720tacaaggtgt tcaacacgac taccaacggc
accaagatag aggaggacga ggtgccggac 780atcacggacc cgttcttcct catcgagacc
atctgcatca tctggttcac gttcgaattg 840tccgtgcgct tcctggcgtg tcccaacaag
ctacatttct tccgggacgt catgaacttt 900atcgatatca tcgccatcat tccgtacttt
attacgttgg ccaccgtcgt ggccgaggag 960gaggacacgt tgaacctgcc acgtgcgcct
gttagtccgc aagwtaaaag caccaaccag 1020gccatgtcgc tggccattct tcgtgtcatt
cggctcgtgc gagtcttccg catcttcaaa 1080cttagccggc atagtaaggg cctgcagatc
ctagggcgca cgcttaaagc cagcatgcgc 1140gagttaggct tgctcatctt cttcctattc
ataggygtsg tsctyttctc gagcrycgtc 1200tacttcgckg argcgggckc cgagmaktcs
ttcttcaagt csatcccrga cgcgttctgg 1260tgggcmgtgg tsaccatgac sacygtgggc
tacggcgaca tgasgccggt cggcgtttgg 1320ggcaagatcg tgggttcgct gtgtgcaatc
gctggtgtat tgaccattgc gctgccagtg 1380ccagtcatag tttcgaattt caattacttt
tatcatcgtg agacggatca ggaagagatg 1440cagtcgcaga acttcaacca cgtgaccagc
tgcccgtacc tgccaggcac cttaggccaa 1500catatgaaga agagctcgct aagcgaatcc
tccagcgatc tcgttgagct ggaggagggc 1560ctgctggtga cgcgcgacca gctggtccgg
aagcagaact gcaatccgcg ccacaacaac 1620aacatcaacg ccatgagcat cgagactgac
gtttga 165677545PRTTribolium 77Ala Thr Met
Thr Met Trp Gln Ser Gly Met Gly Gly Pro Gly Gly Lys 1 5
10 15 Asn Asn Ala Trp Met Lys Leu Met
Gly Ile Val His Lys Glu Arg Arg 20 25
30 His His Asp Ser Gly Ala Thr Ser Thr Asp Arg Thr Leu
Ser Gln Ser 35 40 45
Leu Pro Lys Leu Ser Ser Gln Glu Glu Asp Gly His Thr Pro His Ser 50
55 60 Gln Phe Thr Gly
Val Ala His Phe Glu Pro Ile Pro His Asp His Asp 65 70
75 80 Phe Cys Glu Arg Val Val Ile Asn Val
Ser Gly Leu Arg Phe Glu Thr 85 90
95 Gln Leu Arg Thr Leu Asn Gln Phe Pro Asp Thr Leu Leu Gly
Asp Pro 100 105 110
Ala Arg Arg Ile Arg Tyr Phe Asp Pro Leu Arg Asn Glu Tyr Phe Phe
115 120 125 Asp Arg Asn Arg
Pro Ser Phe Asp Ala Ile Leu Tyr Tyr Tyr Gln Ser 130
135 140 Gly Gly Arg Leu Arg Arg Pro Val
Asn Val Pro Leu Asp Val Phe Ser 145 150
155 160 Glu Glu Ile Lys Phe Tyr Glu Leu Gly Glu Leu Ala
Ile Asn Lys Phe 165 170
175 Arg Glu Asp Glu Gly Phe Ile Lys Glu Glu Glu Lys Pro Pro Ser His
180 185 190 Glu Phe Gln
Arg Asn Val Trp Leu Leu Phe Glu Tyr Pro Glu Ser Ser 195
200 205 Gln Ala Ala Arg Val Val Ala Ile
Ile Ser Val Phe Val Ile Leu Leu 210 215
220 Ser Ile Val Ile Phe Cys Leu Glu Thr Leu Pro Glu Phe
Lys His Tyr 225 230 235
240 Lys Val Phe Asn Thr Thr Thr Asn Gly Thr Lys Ile Glu Glu Asp Glu
245 250 255 Val Pro Asp Ile
Thr Asp Pro Phe Phe Leu Ile Glu Thr Ile Cys Ile 260
265 270 Ile Trp Phe Thr Phe Glu Leu Ser Val
Arg Phe Leu Ala Cys Pro Asn 275 280
285 Lys Leu His Phe Phe Arg Asp Val Met Asn Phe Ile Asp Ile
Ile Ala 290 295 300
Ile Ile Pro Tyr Phe Ile Thr Leu Ala Thr Val Val Ala Glu Glu Glu 305
310 315 320 Asp Thr Leu Asn Leu
Pro Arg Ala Pro Val Ser Pro Gln Lys Ser Thr 325
330 335 Asn Gln Ala Met Ser Leu Ala Ile Leu Arg
Val Ile Arg Leu Val Arg 340 345
350 Val Phe Arg Ile Phe Lys Leu Ser Arg His Ser Lys Gly Leu Gln
Ile 355 360 365 Leu
Gly Arg Thr Leu Lys Ala Ser Met Arg Glu Leu Gly Leu Leu Ile 370
375 380 Phe Phe Leu Phe Ile Gly
Val Val Leu Phe Ser Ser Val Tyr Phe Ala 385 390
395 400 Glu Ala Gly Glu Ser Phe Phe Lys Ser Ile Pro
Asp Ala Phe Trp Trp 405 410
415 Ala Val Val Thr Met Thr Thr Val Gly Tyr Gly Asp Met Pro Val Gly
420 425 430 Val Trp
Gly Lys Ile Val Gly Ser Leu Cys Ala Ile Ala Gly Val Leu 435
440 445 Thr Ile Ala Leu Pro Val Pro
Val Ile Val Ser Asn Phe Asn Tyr Phe 450 455
460 Tyr His Arg Glu Thr Asp Gln Glu Glu Met Gln Ser
Gln Asn Phe Asn 465 470 475
480 His Val Thr Ser Cys Pro Tyr Leu Pro Gly Thr Leu Gly Gln His Met
485 490 495 Lys Lys Ser
Ser Leu Ser Glu Ser Ser Ser Asp Leu Val Glu Leu Glu 500
505 510 Glu Gly Leu Leu Val Thr Arg Asp
Gln Leu Val Arg Lys Gln Asn Cys 515 520
525 Asn Pro Arg His Asn Asn Asn Ile Asn Ala Met Ser Ile
Glu Thr Asp 530 535 540
Val 545 781743DNAMyzus persicae 78atgtggcact cgggcggcat gggcagccac
ggcggtggct ggatgaagct gatgggaatg 60gtgcacaggg accggagatc ggcgcaacgg
cacgtacagg acgccgctac agcattactg 120gctcccatcg acaggtctct gccgaaactc
agtacccaag acgaagacgg ctgtggtcca 180ggggcaaatc ttggaacagg cctcacacac
ggtcatcctc aacactgttc ggggagcgcg 240acattcgaac cgataccgca cgaccacgac
ttttgcgaaa gagtaacaat caacgtgagc 300ggtatgaggt tcgagacgca gctgcggacg
ttgaaccagt tcccggacac gctgctggga 360gacccgtgtc ggaggatgcg gtacttcgat
cctctgcgga acgagtactt cttcgacagg 420aaccggccga cgttcgacgc catactctac
tattaccaga gcggtggccg gctgaggagg 480ccaactacgg tgccgttgga cgtgttctcc
gaggagatca agttctacga gctcggcgaa 540ctggctacca ataaatttag ggaagaagag
ggttttataa aagaagaaga gaaaccactg 600ccaaagcctg agttccagcg gaaggtgtgg
ctgctgttcg agtacccgga gagctctcaa 660gccgcccggg tggtggccat catatctgtg
ttcgtcatac tgctgtccat cgttatattc 720tgcctggaaa cgttgccaga gttcaaacac
tacaaggtgt tcaacacgac gaccaatggt 780accaagatcg aggaggatga ggtgcccgat
atcaccgacc cgttcttctt gattgagacc 840atttgtatcg tgtggttcac gttcgagctg
tccgtccgct ttctcgcctg ccccaacaag 900ttgcacttct tcaaagacgt gatgaacact
atcgacataa tcgccataat accatacttc 960atcacattag ccacggtgat tgccgaggag
gaggacccaa cgatgaacct gcccaaggcg 1020ccgcagaacc cgcaggacaa aagcaccaac
caggccatgt cgttggccat acttagggtc 1080atccggctcg tgagggtttt caggatattc
aaattgtccc gacattccaa gggattgcaa 1140attctcgggc gcaccctgaa agcctccatg
cgagaactgg gattgctcat atttttcttg 1200tttatcggag tggtgctgtt ctcgagcacc
gtgtacttcg ccgaggcggg ttccgatcag 1260tcgtttttca agtccatccc ggacgcgttc
tggtgggccg tggtcaccat gacgacagtc 1320ggatacggtg acatgagacc agtgggcgtg
tgggggaaaa ttgtcggttc gctgtgcgcg 1380attgccggcg tgctcacaat cgcactgccc
gtgcccgtca tcgtgtccaa cttcaactat 1440ttctatcaca gagagactga ccaagaagac
atgcaatcgc agaacttcaa ccacgtcacc 1500agctgccctt atcttcccgg tactttaggt
caacacatgg tgaaatatcc gtcgggcggt 1560gactcgacgt cggacctgat ggacttggag
tcggccgaca attgtctgct ggacgcggag 1620ctggacgaac cgccactgac gttgccgccg
ccgcagcaac ccaaaaagtt caacagctgc 1680gccaccgtgg tcaggctcaa caacaacagc
atcaagaggt tcagtgtcga aactgacgtc 1740tga
174379580PRTMyzus persicae 79Met Trp His
Ser Gly Gly Met Gly Ser His Gly Gly Gly Trp Met Lys 1 5
10 15 Leu Met Gly Met Val His Arg Asp
Arg Arg Ser Ala Gln Arg His Val 20 25
30 Gln Asp Ala Ala Thr Ala Leu Leu Ala Pro Ile Asp Arg
Ser Leu Pro 35 40 45
Lys Leu Ser Thr Gln Asp Glu Asp Gly Cys Gly Pro Gly Ala Asn Leu 50
55 60 Gly Thr Gly Leu
Thr His Gly His Pro Gln His Cys Ser Gly Ser Ala 65 70
75 80 Thr Phe Glu Pro Ile Pro His Asp His
Asp Phe Cys Glu Arg Val Thr 85 90
95 Ile Asn Val Ser Gly Met Arg Phe Glu Thr Gln Leu Arg Thr
Leu Asn 100 105 110
Gln Phe Pro Asp Thr Leu Leu Gly Asp Pro Cys Arg Arg Met Arg Tyr
115 120 125 Phe Asp Pro Leu
Arg Asn Glu Tyr Phe Phe Asp Arg Asn Arg Pro Thr 130
135 140 Phe Asp Ala Ile Leu Tyr Tyr Tyr
Gln Ser Gly Gly Arg Leu Arg Arg 145 150
155 160 Pro Thr Thr Val Pro Leu Asp Val Phe Ser Glu Glu
Ile Lys Phe Tyr 165 170
175 Glu Leu Gly Glu Leu Ala Thr Asn Lys Phe Arg Glu Glu Glu Gly Phe
180 185 190 Ile Lys Glu
Glu Glu Lys Pro Leu Pro Lys Pro Glu Phe Gln Arg Lys 195
200 205 Val Trp Leu Leu Phe Glu Tyr Pro
Glu Ser Ser Gln Ala Ala Arg Val 210 215
220 Val Ala Ile Ile Ser Val Phe Val Ile Leu Leu Ser Ile
Val Ile Phe 225 230 235
240 Cys Leu Glu Thr Leu Pro Glu Phe Lys His Tyr Lys Val Phe Asn Thr
245 250 255 Thr Thr Asn Gly
Thr Lys Ile Glu Glu Asp Glu Val Pro Asp Ile Thr 260
265 270 Asp Pro Phe Phe Leu Ile Glu Thr Ile
Cys Ile Val Trp Phe Thr Phe 275 280
285 Glu Leu Ser Val Arg Phe Leu Ala Cys Pro Asn Lys Leu His
Phe Phe 290 295 300
Lys Asp Val Met Asn Thr Ile Asp Ile Ile Ala Ile Ile Pro Tyr Phe 305
310 315 320 Ile Thr Leu Ala Thr
Val Ile Ala Glu Glu Glu Asp Pro Thr Met Asn 325
330 335 Leu Pro Lys Ala Pro Gln Asn Pro Gln Asp
Lys Ser Thr Asn Gln Ala 340 345
350 Met Ser Leu Ala Ile Leu Arg Val Ile Arg Leu Val Arg Val Phe
Arg 355 360 365 Ile
Phe Lys Leu Ser Arg His Ser Lys Gly Leu Gln Ile Leu Gly Arg 370
375 380 Thr Leu Lys Ala Ser Met
Arg Glu Leu Gly Leu Leu Ile Phe Phe Leu 385 390
395 400 Phe Ile Gly Val Val Leu Phe Ser Ser Thr Val
Tyr Phe Ala Glu Ala 405 410
415 Gly Ser Asp Gln Ser Phe Phe Lys Ser Ile Pro Asp Ala Phe Trp Trp
420 425 430 Ala Val
Val Thr Met Thr Thr Val Gly Tyr Gly Asp Met Arg Pro Val 435
440 445 Gly Val Trp Gly Lys Ile Val
Gly Ser Leu Cys Ala Ile Ala Gly Val 450 455
460 Leu Thr Ile Ala Leu Pro Val Pro Val Ile Val Ser
Asn Phe Asn Tyr 465 470 475
480 Phe Tyr His Arg Glu Thr Asp Gln Glu Asp Met Gln Ser Gln Asn Phe
485 490 495 Asn His Val
Thr Ser Cys Pro Tyr Leu Pro Gly Thr Leu Gly Gln His 500
505 510 Met Val Lys Tyr Pro Ser Gly Gly
Asp Ser Thr Ser Asp Leu Met Asp 515 520
525 Leu Glu Ser Ala Asp Asn Cys Leu Leu Asp Ala Glu Leu
Asp Glu Pro 530 535 540
Pro Leu Thr Leu Pro Pro Pro Gln Gln Pro Lys Lys Phe Asn Ser Cys 545
550 555 560 Ala Thr Val Val
Arg Leu Asn Asn Asn Ser Ile Lys Arg Phe Ser Val 565
570 575 Glu Thr Asp Val 580
801743DNAAphis gossypii 80atgtggcact cgggcggcat gggcagccac ggcggtggct
ggatgaaact gatgggcatg 60gtacacaggg accggagatc agcgcaacgg catgtacagg
acgccgctac agcattattg 120gctcccatcg ataggtcact gccgaaactc agtacccaag
acgaagacgg ctgtggtcca 180ggggcaagtc ttggcacagg cctcacacac ggtcatcctc
aacactgttc ggggagtgcg 240acattcgaac cgataccgca cgatcacgac ttctgcgaaa
gagtaacaat caacgtgagc 300ggtatgaggt tcgaaacgca gctgcggacg ttgaaccagt
tcccggacac gctgctggga 360gacccgtgtc ggcggatgcg gtacttcgac ccactgcgca
acgagtactt cttcgacagg 420aaccggccga cgttcgatgc cattctctac tattaccaga
gcggaggccg actgagaagg 480ccaacaacgg tgccgttgga cgtgttctct gaagagatca
agttctacga actcggtgaa 540ctggccacca ataaatttag ggaagaagag ggttttataa
aagaagaaga gaaaccactg 600ccaaaacccg agttccaacg gaaggtatgg ctattgttcg
aatacccgga gagctcacaa 660gccgctcggg tggtggccat catatccgtg ttcgtcatat
tgctgtccat cgtgatattc 720tgtctggaaa cgttgccaga gtttaaacac tataaggtgt
tcaacacgac gactaatggt 780acgaagattg aagaggacga ggtgcctgac atcaccgatc
cgttcttctt gattgagacc 840atatgcatcg tgtggttcac gttcgagctg tccgtccgct
ttctcgcctg ccctaataag 900ttgcacttct tcaaagacgt gatgaataca atcgatataa
tcgctattat accgtacttc 960atcacgttgg ccacagtgat tgctgaggag gaggacccca
cgatgaacct gcccaaggcg 1020ccgcagaacc cgcaggataa gagcaccaac caggccatgt
cactggccat actcagggtc 1080atccggctcg tgagggtttt caggatattc aaactatccc
gacattccaa gggattgcaa 1140attcttgggc gcaccctaaa agcctccatg cgagaactgg
gactgctcat atttttcttg 1200tttatcggag tggtgctgtt ctcgagcacc gtgtacttcg
ccgaggcggg ttccgatcag 1260tcgtttttca agtccatccc ggacgcgttc tggtgggccg
tggtcaccat gacgacagtc 1320ggatacggtg atatgagacc agtgggcgtg tgggggaaaa
ttgtcggttc actgtgcgcg 1380attgccggcg tgctcacaat cgcactgccc gtgcccgtca
tcgtgtccaa cttcaactat 1440ttctatcaca gagagactga ccaagaagac atgcaatcgc
agaacttcaa ccacgtcacc 1500agctgccctt atcttcccgg tactttaggt caacacatgg
tgaaatatcc gtcgggtggt 1560gactcgacgt cggatctgat ggacttggag tcggccgaca
attgtctgct ggacgcggag 1620ctggacgaac cacctctgtc gttgccgccg ccgcagcaac
ccaaaaagtt caacagctgt 1680gccaccgtgg tcaggctcaa caacaacagc atcaagaggt
tcagtgtcga aactgacgtc 1740tga
174381580PRTAphis gossypii 81Met Trp His Ser Gly
Gly Met Gly Ser His Gly Gly Gly Trp Met Lys 1 5
10 15 Leu Met Gly Met Val His Arg Asp Arg Arg
Ser Ala Gln Arg His Val 20 25
30 Gln Asp Ala Ala Thr Ala Leu Leu Ala Pro Ile Asp Arg Ser Leu
Pro 35 40 45 Lys
Leu Ser Thr Gln Asp Glu Asp Gly Cys Gly Pro Gly Ala Ser Leu 50
55 60 Gly Thr Gly Leu Thr His
Gly His Pro Gln His Cys Ser Gly Ser Ala 65 70
75 80 Thr Phe Glu Pro Ile Pro His Asp His Asp Phe
Cys Glu Arg Val Thr 85 90
95 Ile Asn Val Ser Gly Met Arg Phe Glu Thr Gln Leu Arg Thr Leu Asn
100 105 110 Gln Phe
Pro Asp Thr Leu Leu Gly Asp Pro Cys Arg Arg Met Arg Tyr 115
120 125 Phe Asp Pro Leu Arg Asn Glu
Tyr Phe Phe Asp Arg Asn Arg Pro Thr 130 135
140 Phe Asp Ala Ile Leu Tyr Tyr Tyr Gln Ser Gly Gly
Arg Leu Arg Arg 145 150 155
160 Pro Thr Thr Val Pro Leu Asp Val Phe Ser Glu Glu Ile Lys Phe Tyr
165 170 175 Glu Leu Gly
Glu Leu Ala Thr Asn Lys Phe Arg Glu Glu Glu Gly Phe 180
185 190 Ile Lys Glu Glu Glu Lys Pro Leu
Pro Lys Pro Glu Phe Gln Arg Lys 195 200
205 Val Trp Leu Leu Phe Glu Tyr Pro Glu Ser Ser Gln Ala
Ala Arg Val 210 215 220
Val Ala Ile Ile Ser Val Phe Val Ile Leu Leu Ser Ile Val Ile Phe 225
230 235 240 Cys Leu Glu Thr
Leu Pro Glu Phe Lys His Tyr Lys Val Phe Asn Thr 245
250 255 Thr Thr Asn Gly Thr Lys Ile Glu Glu
Asp Glu Val Pro Asp Ile Thr 260 265
270 Asp Pro Phe Phe Leu Ile Glu Thr Ile Cys Ile Val Trp Phe
Thr Phe 275 280 285
Glu Leu Ser Val Arg Phe Leu Ala Cys Pro Asn Lys Leu His Phe Phe 290
295 300 Lys Asp Val Met Asn
Thr Ile Asp Ile Ile Ala Ile Ile Pro Tyr Phe 305 310
315 320 Ile Thr Leu Ala Thr Val Ile Ala Glu Glu
Glu Asp Pro Thr Met Asn 325 330
335 Leu Pro Lys Ala Pro Gln Asn Pro Gln Asp Lys Ser Thr Asn Gln
Ala 340 345 350 Met
Ser Leu Ala Ile Leu Arg Val Ile Arg Leu Val Arg Val Phe Arg 355
360 365 Ile Phe Lys Leu Ser Arg
His Ser Lys Gly Leu Gln Ile Leu Gly Arg 370 375
380 Thr Leu Lys Ala Ser Met Arg Glu Leu Gly Leu
Leu Ile Phe Phe Leu 385 390 395
400 Phe Ile Gly Val Val Leu Phe Ser Ser Thr Val Tyr Phe Ala Glu Ala
405 410 415 Gly Ser
Asp Gln Ser Phe Phe Lys Ser Ile Pro Asp Ala Phe Trp Trp 420
425 430 Ala Val Val Thr Met Thr Thr
Val Gly Tyr Gly Asp Met Arg Pro Val 435 440
445 Gly Val Trp Gly Lys Ile Val Gly Ser Leu Cys Ala
Ile Ala Gly Val 450 455 460
Leu Thr Ile Ala Leu Pro Val Pro Val Ile Val Ser Asn Phe Asn Tyr 465
470 475 480 Phe Tyr His
Arg Glu Thr Asp Gln Glu Asp Met Gln Ser Gln Asn Phe 485
490 495 Asn His Val Thr Ser Cys Pro Tyr
Leu Pro Gly Thr Leu Gly Gln His 500 505
510 Met Val Lys Tyr Pro Ser Gly Gly Asp Ser Thr Ser Asp
Leu Met Asp 515 520 525
Leu Glu Ser Ala Asp Asn Cys Leu Leu Asp Ala Glu Leu Asp Glu Pro 530
535 540 Pro Leu Ser Leu
Pro Pro Pro Gln Gln Pro Lys Lys Phe Asn Ser Cys 545 550
555 560 Ala Thr Val Val Arg Leu Asn Asn Asn
Ser Ile Lys Arg Phe Ser Val 565 570
575 Glu Thr Asp Val 580 821743DNAAphis fabae
82atgtggcact cgggcggcat gggcagccac ggcggtggct ggatgaaact gatgggcatg
60gtacacaggg accggagatc agcgcaaagg catgtacagg acgctgctac agcattattg
120gctcccatcg ataggtcact gccgaaactc agtacccaag acgaagacgg ctgtggtcca
180ggggcaagtc ttggcacagg cctcacacac ggtcatcctc aacactgttc ggggagcgcg
240acattcgaac cgataccgca cgatcacgac ttctgcgaaa gagtaacaat caacgtgagc
300ggtatgaggt tcgagacgca gctgcggacg ttgaaccagt tcccggacac cctgctggga
360gacccatgtc ggcggatgcg gtacttcgat ccactgcgca acgagtactt cttcgacagg
420aaccggccga cgttcgatgc cattctctac tattaccaga gcggaggccg actgaggagg
480ccaaccacgg tgccgttgga cgtgttctct gaggagatca agttctacga actcggtgaa
540ctggccacca ataaatttag ggaagaagag ggttttataa aagaagaaga gaaaccactg
600ccaaaaccag agtttcaacg gaaggtgtgg ctactgttcg aatacccgga gagttcacaa
660gccgctcggg tggtggccat catatccgtg ttcgtcatat tgctgtccat cgtgatattc
720tgtctagaaa cgttgccaga gttcaaacac tataaagtgt tcaacacgac gactaatggt
780acgaagattg aagaggacga ggtgcctgac atcaccgatc cgttcttctt gattgagacc
840atatgtatcg tgtggttcac gttcgagctg tccgtccgct ttctcgcctg ccctaataag
900ttgcacttct tcaaagacgt gatgaataca atcgatataa tcgctattat accgtacttc
960atcacgttgg ccacagtgat tgctgaggag gaggacccca cgatgaacct gcccaaggcg
1020ccgcagaatc cgcaggataa gagcaccaac caggccatgt cactggccat actcagggtc
1080atccggctcg tgagggtttt caggatattc aaactgtccc gacattccaa gggattgcaa
1140attcttgggc gcaccctaaa agcctccatg cgagaactgg gactgctcat atttttcttg
1200tttatcggtg tggtgctatt ctcgagcgcg gtgtacttcg ccgaagccgg ctcagagaat
1260tccttcttca agtccatccc ggacgcattc tggtgggctg ttgttaccat gacgactgtg
1320ggctatggtg acatgacacc agtgggcgtg tgggggaaaa ttgtcggttc actgtgcgcg
1380attgccggcg tgctcacaat cgcactgccc gtgcccgtca tcgtgtccaa cttcaactat
1440ttctatcaca gagagactga ccaagaagac atgcaatcgc agaacttcaa ccacgtcacc
1500agctgccctt atcttcccgg tactttaggt caacacatgg tgaaatatcc gtcgggtggt
1560gactcgacgt cggatctgat ggacttggag tcggccgaca attgtctgct ggacgcggag
1620ctggacgagc cacctctgtc gttgccgccg ccgcagcaac caaaaaagtt caacagctgt
1680gccaccgtgg tcaggctcaa caacaacagc atcaagaggt tcagtgtcga aactgacgtc
1740tga
174383580PRTAphis fabae 83Met Trp His Ser Gly Gly Met Gly Ser His Gly Gly
Gly Trp Met Lys 1 5 10
15 Leu Met Gly Met Val His Arg Asp Arg Arg Ser Ala Gln Arg His Val
20 25 30 Gln Asp Ala
Ala Thr Ala Leu Leu Ala Pro Ile Asp Arg Ser Leu Pro 35
40 45 Lys Leu Ser Thr Gln Asp Glu Asp
Gly Cys Gly Pro Gly Ala Ser Leu 50 55
60 Gly Thr Gly Leu Thr His Gly His Pro Gln His Cys Ser
Gly Ser Ala 65 70 75
80 Thr Phe Glu Pro Ile Pro His Asp His Asp Phe Cys Glu Arg Val Thr
85 90 95 Ile Asn Val Ser
Gly Met Arg Phe Glu Thr Gln Leu Arg Thr Leu Asn 100
105 110 Gln Phe Pro Asp Thr Leu Leu Gly Asp
Pro Cys Arg Arg Met Arg Tyr 115 120
125 Phe Asp Pro Leu Arg Asn Glu Tyr Phe Phe Asp Arg Asn Arg
Pro Thr 130 135 140
Phe Asp Ala Ile Leu Tyr Tyr Tyr Gln Ser Gly Gly Arg Leu Arg Arg 145
150 155 160 Pro Thr Thr Val Pro
Leu Asp Val Phe Ser Glu Glu Ile Lys Phe Tyr 165
170 175 Glu Leu Gly Glu Leu Ala Thr Asn Lys Phe
Arg Glu Glu Glu Gly Phe 180 185
190 Ile Lys Glu Glu Glu Lys Pro Leu Pro Lys Pro Glu Phe Gln Arg
Lys 195 200 205 Val
Trp Leu Leu Phe Glu Tyr Pro Glu Ser Ser Gln Ala Ala Arg Val 210
215 220 Val Ala Ile Ile Ser Val
Phe Val Ile Leu Leu Ser Ile Val Ile Phe 225 230
235 240 Cys Leu Glu Thr Leu Pro Glu Phe Lys His Tyr
Lys Val Phe Asn Thr 245 250
255 Thr Thr Asn Gly Thr Lys Ile Glu Glu Asp Glu Val Pro Asp Ile Thr
260 265 270 Asp Pro
Phe Phe Leu Ile Glu Thr Ile Cys Ile Val Trp Phe Thr Phe 275
280 285 Glu Leu Ser Val Arg Phe Leu
Ala Cys Pro Asn Lys Leu His Phe Phe 290 295
300 Lys Asp Val Met Asn Thr Ile Asp Ile Ile Ala Ile
Ile Pro Tyr Phe 305 310 315
320 Ile Thr Leu Ala Thr Val Ile Ala Glu Glu Glu Asp Pro Thr Met Asn
325 330 335 Leu Pro Lys
Ala Pro Gln Asn Pro Gln Asp Lys Ser Thr Asn Gln Ala 340
345 350 Met Ser Leu Ala Ile Leu Arg Val
Ile Arg Leu Val Arg Val Phe Arg 355 360
365 Ile Phe Lys Leu Ser Arg His Ser Lys Gly Leu Gln Ile
Leu Gly Arg 370 375 380
Thr Leu Lys Ala Ser Met Arg Glu Leu Gly Leu Leu Ile Phe Phe Leu 385
390 395 400 Phe Ile Gly Val
Val Leu Phe Ser Ser Ala Val Tyr Phe Ala Glu Ala 405
410 415 Gly Ser Glu Asn Ser Phe Phe Lys Ser
Ile Pro Asp Ala Phe Trp Trp 420 425
430 Ala Val Val Thr Met Thr Thr Val Gly Tyr Gly Asp Met Thr
Pro Val 435 440 445
Gly Val Trp Gly Lys Ile Val Gly Ser Leu Cys Ala Ile Ala Gly Val 450
455 460 Leu Thr Ile Ala Leu
Pro Val Pro Val Ile Val Ser Asn Phe Asn Tyr 465 470
475 480 Phe Tyr His Arg Glu Thr Asp Gln Glu Asp
Met Gln Ser Gln Asn Phe 485 490
495 Asn His Val Thr Ser Cys Pro Tyr Leu Pro Gly Thr Leu Gly Gln
His 500 505 510 Met
Val Lys Tyr Pro Ser Gly Gly Asp Ser Thr Ser Asp Leu Met Asp 515
520 525 Leu Glu Ser Ala Asp Asn
Cys Leu Leu Asp Ala Glu Leu Asp Glu Pro 530 535
540 Pro Leu Ser Leu Pro Pro Pro Gln Gln Pro Lys
Lys Phe Asn Ser Cys 545 550 555
560 Ala Thr Val Val Arg Leu Asn Asn Asn Ser Ile Lys Arg Phe Ser Val
565 570 575 Glu Thr
Asp Val 580 841164DNADrosophila melanogaster 84gccaccatgt
gccgggctcc cattgcgtca ctcgactgta tggaggagtt cagtggtcgt 60tcgatcagtt
tgggctccaa tccggcgcta ccattgcgcc atggatccac accgacgccg 120ggactgcggt
acaagaatct gggcaagagc gggctgcgta tctcgaatgt gggattgggt 180acttggccgg
tattctcgcc gggcgtaagc gatgaccagg cggaggcaat cctaaagctg 240gccatcgaga
gcggtatcaa tctgttcgac atctcggagg cgcactcgga aacggagatc 300ggcaagatac
tgcagcgggc gggctggaag aggaccgcct atgtcatcac cacgaaggtc 360tactggagca
ccaagtcgga ggaacgtggt ctctcccgga aacacatcat cgaatgtgtt 420cgtgccagtt
tgcagcgatt gcagctgcag tacatcgata tcgtcatcat ccacaaggcg 480gatcccatgt
gtcccatgga ggaagtggtg cgcgccatga gctacgtgat acagcagggc 540tgggcaatgt
attggggcac cgctcgatgg agccaggtgg agatcatgga ggcctatacc 600aactgccgcc
agttcaactg catcacgccc attgtggagc agtccgagta ccatatgttc 660tgtcgcgaaa
agtgcgaact ctacctgccg gagatgtaca acaagatcgg agtgggcctc 720atggcctggg
gtccactctc gatggccctc agcgacaccc agaatgggga caagcttttc 780ctgcccaagg
gctccttcaa gacgaagagc ttctcgtgga ccgaggacga gatcaatcgt 840aatgccgctc
tgtcgccgca gggcagttgg ggtaaggacc ggatcgatga ggggcgccgc 900cactgcgacc
gtctccgcga ccttgccgcc ctcgccgaga agctgggctg cagccccacc 960cagctgtcca
tcgcctggtc gctgaaacat gagccagtgc aatgcctgct gctgggcgcc 1020acatcggcgg
agcagctgca ccaaagtctg cagtcgttgc agctgctgcc acgactctca 1080tcgagcgtta
tactggagct ggaaaggata ttggaaaaca agccggtgcg gccgccgatg 1140atctcgacct
tggcgctccg gtga
116485387PRTDrosophila melanogaster 85Ala Thr Met Cys Arg Ala Pro Ile Ala
Ser Leu Asp Cys Met Glu Glu 1 5 10
15 Phe Ser Gly Arg Ser Ile Ser Leu Gly Ser Asn Pro Ala Leu
Pro Leu 20 25 30
Arg His Gly Ser Thr Pro Thr Pro Gly Leu Arg Tyr Lys Asn Leu Gly
35 40 45 Lys Ser Gly Leu
Arg Ile Ser Asn Val Gly Leu Gly Thr Trp Pro Val 50
55 60 Phe Ser Pro Gly Val Ser Asp Asp
Gln Ala Glu Ala Ile Leu Lys Leu 65 70
75 80 Ala Ile Glu Ser Gly Ile Asn Leu Phe Asp Ile Ser
Glu Ala His Ser 85 90
95 Glu Thr Glu Ile Gly Lys Ile Leu Gln Arg Ala Gly Trp Lys Arg Thr
100 105 110 Ala Tyr Val
Ile Thr Thr Lys Val Tyr Trp Ser Thr Lys Ser Glu Glu 115
120 125 Arg Gly Leu Ser Arg Lys His Ile
Ile Glu Cys Val Arg Ala Ser Leu 130 135
140 Gln Arg Leu Gln Leu Gln Tyr Ile Asp Ile Val Ile Ile
His Lys Ala 145 150 155
160 Asp Pro Met Cys Pro Met Glu Glu Val Val Arg Ala Met Ser Tyr Val
165 170 175 Ile Gln Gln Gly
Trp Ala Met Tyr Trp Gly Thr Ala Arg Trp Ser Gln 180
185 190 Val Glu Ile Met Glu Ala Tyr Thr Asn
Cys Arg Gln Phe Asn Cys Ile 195 200
205 Thr Pro Ile Val Glu Gln Ser Glu Tyr His Met Phe Cys Arg
Glu Lys 210 215 220
Cys Glu Leu Tyr Leu Pro Glu Met Tyr Asn Lys Ile Gly Val Gly Leu 225
230 235 240 Met Ala Trp Gly Pro
Leu Ser Met Ala Leu Ser Asp Thr Gln Asn Gly 245
250 255 Asp Lys Leu Phe Leu Pro Lys Gly Ser Phe
Lys Thr Lys Ser Phe Ser 260 265
270 Trp Thr Glu Asp Glu Ile Asn Arg Asn Ala Ala Leu Ser Pro Gln
Gly 275 280 285 Ser
Trp Gly Lys Asp Arg Ile Asp Glu Gly Arg Arg His Cys Asp Arg 290
295 300 Leu Arg Asp Leu Ala Ala
Leu Ala Glu Lys Leu Gly Cys Ser Pro Thr 305 310
315 320 Gln Leu Ser Ile Ala Trp Ser Leu Lys His Glu
Pro Val Gln Cys Leu 325 330
335 Leu Leu Gly Ala Thr Ser Ala Glu Gln Leu His Gln Ser Leu Gln Ser
340 345 350 Leu Gln
Leu Leu Pro Arg Leu Ser Ser Ser Val Ile Leu Glu Leu Glu 355
360 365 Arg Ile Leu Glu Asn Lys Pro
Val Arg Pro Pro Met Ile Ser Thr Leu 370 375
380 Ala Leu Arg 385 861188DNADrosophila
melanogaster 86gccaccatgt gccgggctcc cattgcgtca ctcgactgta tggaggagtt
cggtggtacg 60ggcggtcatc ttgatttcgg tcgttcgatc agtttgggct ccaatccggc
gctaccattg 120cgccatggat ccacaccgac gccgggactg cggtacaaga atctgggcaa
gagcgggctg 180cgtatctcga atgtgggatt gggtacttgg ccggtattct cgccgggcgt
aagcgatgac 240caggcggagg caatcctaaa gctggccatc gagagcggta tcaatctgtt
cgacatctcg 300gaggcgcact cggaaacgga gatcggcaag atactgcagc gggcgggctg
gaagaggacc 360gcctatgtca tcaccacgaa ggtctactgg agcaccaagt cggaggaacg
tggtctctcc 420cggaaacaca tcatcgaatg tgttcgtgcc agtttgcagc gattgcagct
gcagtacatc 480gatatcgtca tcatccacaa ggcggatccc atgtgtccca tggaggaagt
ggtgcgcgcc 540atgagctacg tgatacagca gggctgggca atgtattggg gcaccgctcg
atggagccag 600gtggagatca tggaggccta taccaactgc cgccagttca actgcatcac
gcccattgtg 660gagcagtccg agtaccatat gttctgtcgc gaaaagtgcg aactctacct
gccggagatg 720tacaacaaga tcggagtggg cctcatggcc tggggtccac tctcgatggc
cctcagcgac 780acccagaatg gggacaagct tttcctgccc aagggctcct tcaagacgaa
gagcttctcg 840tggaccgagg acgagatcaa tcgtaatgcc gctctgtcgc cgcagggcag
ttggggtaag 900gaccggatcg atgaggggcg ccgccactgc gaccgtctcc gcgaccttgc
cgccctcgcc 960gagaagctgg gctgcagccc cacccagctg tccatcgcct ggtcgctgaa
acatgagcca 1020gtgcaatgcc tgctgctggg cgccacatcg gcggagcagc tgcaccaaag
tctgcagtcg 1080ttgcagctgc tgccacgact ctcatcgagc gttatgctgg agctggaaag
gatattggaa 1140aacaagccgg tgcggccgcc gatgatctcg accttggcgc tccggtga
118887395PRTDrosophila melanogaster 87Ala Thr Met Cys Arg Ala
Pro Ile Ala Ser Leu Asp Cys Met Glu Glu 1 5
10 15 Phe Gly Gly Thr Gly Gly His Leu Asp Phe Gly
Arg Ser Ile Ser Leu 20 25
30 Gly Ser Asn Pro Ala Leu Pro Leu Arg His Gly Ser Thr Pro Thr
Pro 35 40 45 Gly
Leu Arg Tyr Lys Asn Leu Gly Lys Ser Gly Leu Arg Ile Ser Asn 50
55 60 Val Gly Leu Gly Thr Trp
Pro Val Phe Ser Pro Gly Val Ser Asp Asp 65 70
75 80 Gln Ala Glu Ala Ile Leu Lys Leu Ala Ile Glu
Ser Gly Ile Asn Leu 85 90
95 Phe Asp Ile Ser Glu Ala His Ser Glu Thr Glu Ile Gly Lys Ile Leu
100 105 110 Gln Arg
Ala Gly Trp Lys Arg Thr Ala Tyr Val Ile Thr Thr Lys Val 115
120 125 Tyr Trp Ser Thr Lys Ser Glu
Glu Arg Gly Leu Ser Arg Lys His Ile 130 135
140 Ile Glu Cys Val Arg Ala Ser Leu Gln Arg Leu Gln
Leu Gln Tyr Ile 145 150 155
160 Asp Ile Val Ile Ile His Lys Ala Asp Pro Met Cys Pro Met Glu Glu
165 170 175 Val Val Arg
Ala Met Ser Tyr Val Ile Gln Gln Gly Trp Ala Met Tyr 180
185 190 Trp Gly Thr Ala Arg Trp Ser Gln
Val Glu Ile Met Glu Ala Tyr Thr 195 200
205 Asn Cys Arg Gln Phe Asn Cys Ile Thr Pro Ile Val Glu
Gln Ser Glu 210 215 220
Tyr His Met Phe Cys Arg Glu Lys Cys Glu Leu Tyr Leu Pro Glu Met 225
230 235 240 Tyr Asn Lys Ile
Gly Val Gly Leu Met Ala Trp Gly Pro Leu Ser Met 245
250 255 Ala Leu Ser Asp Thr Gln Asn Gly Asp
Lys Leu Phe Leu Pro Lys Gly 260 265
270 Ser Phe Lys Thr Lys Ser Phe Ser Trp Thr Glu Asp Glu Ile
Asn Arg 275 280 285
Asn Ala Ala Leu Ser Pro Gln Gly Ser Trp Gly Lys Asp Arg Ile Asp 290
295 300 Glu Gly Arg Arg His
Cys Asp Arg Leu Arg Asp Leu Ala Ala Leu Ala 305 310
315 320 Glu Lys Leu Gly Cys Ser Pro Thr Gln Leu
Ser Ile Ala Trp Ser Leu 325 330
335 Lys His Glu Pro Val Gln Cys Leu Leu Leu Gly Ala Thr Ser Ala
Glu 340 345 350 Gln
Leu His Gln Ser Leu Gln Ser Leu Gln Leu Leu Pro Arg Leu Ser 355
360 365 Ser Ser Val Met Leu Glu
Leu Glu Arg Ile Leu Glu Asn Lys Pro Val 370 375
380 Arg Pro Pro Met Ile Ser Thr Leu Ala Leu Arg
385 390 395 8823DNAArtificial
sequencePrimer 88ccggtaccat ggccgccgtt gcc
238922DNAArtificial sequencePrimer 89ccggtctccg tagtcggcca
cc 229024DNAArtificial
sequencePrimer 90gccaccatgt tcgctggcgg aggt
249122DNAArtificial sequencePrimer 91tcattgatca ctgcaaacct
cg 229225DNAArtificial
sequencePrimer 92gccaccatgt ggcactcggg cggca
259318DNAArtificial sequencePrimer 93tcagacgtca gtttcgac
189425DNAArtificial
sequencePrimer 94gccaccatgt ggcactcggg cggca
259518DNAArtificial sequencePrimer 95tcagacgtca gtttcgac
189625DNAArtificial
sequencePrimer 96gccaccatgt ggcactcggg cggca
259718DNAArtificial sequencePrimer 97tcagacgtca gtttcgac
189836DNAArtificial
sequencePrimer 98gccaccatgt gccgggctcc cattgcgtca ctcgac
369930DNAArtificial sequencePrimer 99tcaccggagc gccaaggtcg
agatcatcgg 3010036DNAArtificial
sequencePrimer 100gccaccatgt gccgggctcc cattgcgtca ctcgac
3610130DNAArtificial sequencePrimer 101tcaccggagc
gccaaggtcg agatcatcgg
30102480PRTArtificial sequenceConsensus 102Ser Leu Pro Lys Leu Xaa Xaa
Gln Xaa Glu Xaa Xaa Xaa Xaa Xaa Xaa 1 5
10 15 Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa
Xaa Xaa Xaa Xaa Xaa 20 25
30 Gly Xaa Xaa Xaa Phe Glu Pro Ile Xaa His Asp His Asp Phe Cys
Glu 35 40 45 Arg
Val Xaa Ile Asn Val Ser Gly Xaa Xaa Phe Glu Thr Gln Leu Arg 50
55 60 Thr Leu Asn Gln Phe Pro
Xaa Thr Leu Leu Gly Asp Pro Xaa Arg Arg 65 70
75 80 Xaa Arg Tyr Phe Asp Pro Leu Arg Asn Glu Tyr
Phe Phe Asp Arg Xaa 85 90
95 Arg Pro Xaa Phe Asp Ala Ile Leu Tyr Tyr Tyr Gln Ser Gly Gly Arg
100 105 110 Leu Arg
Arg Pro Xaa Xaa Val Pro Leu Asp Val Phe Ser Glu Glu Ile 115
120 125 Lys Phe Tyr Glu Leu Gly Xaa
Xaa Ala Xaa Asn Lys Phe Arg Glu Xaa 130 135
140 Glu Gly Phe Ile Lys Glu Glu Glu Xaa Pro Xaa Pro
Xaa Xaa Glu Xaa 145 150 155
160 Gln Arg Xaa Xaa Trp Leu Leu Phe Glu Tyr Pro Glu Ser Ser Gln Ala
165 170 175 Ala Arg Val
Val Ala Ile Ile Ser Val Phe Val Ile Leu Leu Ser Ile 180
185 190 Val Ile Phe Cys Leu Glu Thr Leu
Pro Glu Phe Lys His Tyr Lys Val 195 200
205 Phe Asn Thr Thr Thr Asn Gly Thr Lys Ile Glu Glu Asp
Glu Val Pro 210 215 220
Asp Ile Thr Asp Pro Phe Phe Leu Ile Glu Thr Xaa Cys Ile Xaa Trp 225
230 235 240 Phe Thr Phe Glu
Leu Xaa Val Arg Phe Leu Ala Cys Pro Asn Lys Xaa 245
250 255 Xaa Phe Xaa Xaa Asp Val Met Asn Xaa
Ile Asp Ile Ile Ala Ile Ile 260 265
270 Pro Tyr Phe Ile Thr Leu Ala Thr Val Xaa Ala Glu Glu Glu
Asp Xaa 275 280 285
Thr Xaa Asn Leu Pro Xaa Ala Pro Xaa Xaa Pro Gln Xaa Lys Ser Xaa 290
295 300 Asn Gln Ala Met Ser
Leu Ala Ile Leu Arg Val Ile Arg Leu Val Arg 305 310
315 320 Val Phe Arg Ile Phe Lys Leu Ser Arg His
Ser Lys Gly Leu Gln Ile 325 330
335 Leu Gly Arg Thr Leu Lys Ala Ser Met Arg Glu Leu Gly Leu Leu
Ile 340 345 350 Phe
Phe Leu Phe Ile Gly Val Val Leu Phe Ser Ser Xaa Val Tyr Phe 355
360 365 Ala Glu Ala Gly Xaa Xaa
Xaa Ser Phe Phe Lys Ser Ile Pro Asp Ala 370 375
380 Phe Trp Trp Ala Val Val Thr Met Thr Thr Val
Gly Tyr Gly Asp Met 385 390 395
400 Xaa Pro Val Gly Val Trp Gly Lys Ile Val Gly Ser Leu Cys Ala Ile
405 410 415 Ala Gly
Val Leu Thr Ile Ala Leu Pro Val Pro Val Ile Val Ser Asn 420
425 430 Phe Asn Tyr Phe Tyr His Arg
Glu Thr Asp Gln Glu Xaa Met Gln Ser 435 440
445 Gln Asn Phe Asn His Val Thr Ser Cys Pro Tyr Leu
Pro Gly Thr Xaa 450 455 460
Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Ser Asp 465
470 475 480
103395PRTArtificial sequenceConsensus 103Ala Thr Met Cys Arg Ala Pro Ile
Ala Ser Leu Asp Cys Met Glu Glu 1 5 10
15 Phe Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Gly Arg Ser
Ile Ser Leu 20 25 30
Gly Ser Asn Pro Ala Leu Pro Leu Arg His Gly Ser Thr Pro Thr Pro
35 40 45 Gly Leu Arg Tyr
Lys Asn Leu Gly Lys Ser Gly Leu Arg Ile Ser Asn 50
55 60 Val Gly Leu Gly Thr Trp Pro Val
Phe Ser Pro Gly Val Ser Asp Asp 65 70
75 80 Gln Ala Glu Ala Ile Leu Lys Leu Ala Ile Glu Ser
Gly Ile Asn Leu 85 90
95 Phe Asp Ile Ser Glu Ala His Ser Glu Thr Glu Ile Gly Lys Ile Leu
100 105 110 Gln Arg Ala
Gly Trp Lys Arg Thr Ala Tyr Val Ile Thr Thr Lys Val 115
120 125 Tyr Trp Ser Thr Lys Ser Glu Glu
Arg Gly Leu Ser Arg Lys His Ile 130 135
140 Ile Glu Cys Val Arg Ala Ser Leu Gln Arg Leu Gln Leu
Gln Tyr Ile 145 150 155
160 Asp Ile Val Ile Ile His Lys Ala Asp Pro Met Cys Pro Met Glu Glu
165 170 175 Val Val Arg Ala
Met Ser Tyr Val Ile Gln Gln Gly Trp Ala Met Tyr 180
185 190 Trp Gly Thr Ala Arg Trp Ser Gln Val
Glu Ile Met Glu Ala Tyr Thr 195 200
205 Asn Cys Arg Gln Phe Asn Cys Ile Thr Pro Ile Val Glu Gln
Ser Glu 210 215 220
Tyr His Met Phe Cys Arg Glu Lys Cys Glu Leu Tyr Leu Pro Glu Met 225
230 235 240 Tyr Asn Lys Ile Gly
Val Gly Leu Met Ala Trp Gly Pro Leu Ser Met 245
250 255 Ala Leu Ser Asp Thr Gln Asn Gly Asp Lys
Leu Phe Leu Pro Lys Gly 260 265
270 Ser Phe Lys Thr Lys Ser Phe Ser Trp Thr Glu Asp Glu Ile Asn
Arg 275 280 285 Asn
Ala Ala Leu Ser Pro Gln Gly Ser Trp Gly Lys Asp Arg Ile Asp 290
295 300 Glu Gly Arg Arg His Cys
Asp Arg Leu Arg Asp Leu Ala Ala Leu Ala 305 310
315 320 Glu Lys Leu Gly Cys Ser Pro Thr Gln Leu Ser
Ile Ala Trp Ser Leu 325 330
335 Lys His Glu Pro Val Gln Cys Leu Leu Leu Gly Ala Thr Ser Ala Glu
340 345 350 Gln Leu
His Gln Ser Leu Gln Ser Leu Gln Leu Leu Pro Arg Leu Ser 355
360 365 Ser Ser Val Xaa Leu Glu Leu
Glu Arg Ile Leu Glu Asn Lys Pro Val 370 375
380 Arg Pro Pro Met Ile Ser Thr Leu Ala Leu Arg 385
390 395 1045PRTArtificial sequenceMotif
104Ser Leu Pro Lys Leu 1 5 1054PRTArtificial
sequenceMotif 105Phe Glu Pro Ile 1 1069PRTArtificial
sequenceMotif 106His Asp His Asp Phe Cys Glu Arg Val 1 5
1075PRTArtificial sequenceMotif 107Ile Asn Val Ser Gly 1
5 10812PRTArtificial sequenceMotif 108Phe Glu Thr Gln Leu
Arg Thr Leu Asn Gln Phe Pro 1 5 10
1096PRTArtificial sequenceMotif 109Thr Leu Leu Gly Asp Pro 1
5 11014PRTArtificial sequenceMotif 110Arg Tyr Phe Asp Pro Leu
Arg Asn Glu Tyr Phe Phe Asp Arg 1 5 10
11117PRTArtificial sequenceMotif 111Phe Asp Ala Ile Leu Tyr
Tyr Tyr Gln Ser Gly Gly Arg Leu Arg Arg 1 5
10 15 Pro 11216PRTArtificial sequenceMotif 112Val
Pro Leu Asp Val Phe Ser Glu Glu Ile Lys Phe Tyr Glu Leu Gly 1
5 10 15 1135PRTArtificial
sequenceMotif 113Asn Lys Phe Arg Glu 1 5
1148PRTArtificial sequenceMotif 114Glu Gly Phe Ile Lys Glu Glu Glu 1
5 11571PRTArtificial sequenceMotif 115Trp Leu Leu
Phe Glu Tyr Pro Glu Ser Ser Gln Ala Ala Arg Val Val 1 5
10 15 Ala Ile Ile Ser Val Phe Val Ile
Leu Leu Ser Ile Val Ile Phe Cys 20 25
30 Leu Glu Thr Leu Pro Glu Phe Lys His Tyr Lys Val Phe
Asn Thr Thr 35 40 45
Thr Asn Gly Thr Lys Ile Glu Glu Asp Glu Val Pro Asp Ile Thr Asp 50
55 60 Pro Phe Phe Leu
Ile Glu Thr 65 70 1166PRTArtificial sequenceMotif
116Trp Phe Thr Phe Glu Leu 1 5 1179PRTArtificial
sequenceMotif 117Val Arg Phe Leu Ala Cys Pro Asn Lys 1 5
1184PRTArtificial sequenceMotif 118Asp Val Met Asn 1
11916PRTArtificial sequenceMotif 119Ile Asp Ile Ile Ala Ile Ile
Pro Tyr Phe Ile Thr Leu Ala Thr Val 1 5
10 15 1205PRTArtificial sequenceMotif 120Ala Glu
Glu Glu Asp 1 5 12160PRTArtificial sequenceMotif 121Asn
Gln Ala Met Ser Leu Ala Ile Leu Arg Val Ile Arg Leu Val Arg 1
5 10 15 Val Phe Arg Ile Phe Lys
Leu Ser Arg His Ser Lys Gly Leu Gln Ile 20
25 30 Leu Gly Arg Thr Leu Lys Ala Ser Met Arg
Glu Leu Gly Leu Leu Ile 35 40
45 Phe Phe Leu Phe Ile Gly Val Val Leu Phe Ser Ser 50
55 60 1227PRTArtificial sequenceMotif
122Val Tyr Phe Ala Glu Ala Gly 1 5
12325PRTArtificial sequenceMotif 123Ser Phe Phe Lys Ser Ile Pro Asp Ala
Phe Trp Trp Ala Val Val Thr 1 5 10
15 Met Thr Thr Val Gly Tyr Gly Asp Met 20
25 12443PRTArtificial sequenceMotif 124Pro Val Gly Val Trp
Gly Lys Ile Val Gly Ser Leu Cys Ala Ile Ala 1 5
10 15 Gly Val Leu Thr Ile Ala Leu Pro Val Pro
Val Ile Val Ser Asn Phe 20 25
30 Asn Tyr Phe Tyr His Arg Glu Thr Asp Gln Glu 35
40 12518PRTArtificial sequenceMotif 125Met Gln
Ser Gln Asn Phe Asn His Val Thr Ser Cys Pro Tyr Leu Pro 1 5
10 15 Gly Thr 12617PRTArtificial
sequenceMotif 126Ala Thr Met Cys Arg Ala Pro Ile Ala Ser Leu Asp Cys Met
Glu Glu 1 5 10 15
Phe 127345PRTArtificial sequenceMotif 127Gly Arg Ser Ile Ser Leu Gly Ser
Asn Pro Ala Leu Pro Leu Arg His 1 5 10
15 Gly Ser Thr Pro Thr Pro Gly Leu Arg Tyr Lys Asn Leu
Gly Lys Ser 20 25 30
Gly Leu Arg Ile Ser Asn Val Gly Leu Gly Thr Trp Pro Val Phe Ser
35 40 45 Pro Gly Val Ser
Asp Asp Gln Ala Glu Ala Ile Leu Lys Leu Ala Ile 50
55 60 Glu Ser Gly Ile Asn Leu Phe Asp
Ile Ser Glu Ala His Ser Glu Thr 65 70
75 80 Glu Ile Gly Lys Ile Leu Gln Arg Ala Gly Trp Lys
Arg Thr Ala Tyr 85 90
95 Val Ile Thr Thr Lys Val Tyr Trp Ser Thr Lys Ser Glu Glu Arg Gly
100 105 110 Leu Ser Arg
Lys His Ile Ile Glu Cys Val Arg Ala Ser Leu Gln Arg 115
120 125 Leu Gln Leu Gln Tyr Ile Asp Ile
Val Ile Ile His Lys Ala Asp Pro 130 135
140 Met Cys Pro Met Glu Glu Val Val Arg Ala Met Ser Tyr
Val Ile Gln 145 150 155
160 Gln Gly Trp Ala Met Tyr Trp Gly Thr Ala Arg Trp Ser Gln Val Glu
165 170 175 Ile Met Glu Ala
Tyr Thr Asn Cys Arg Gln Phe Asn Cys Ile Thr Pro 180
185 190 Ile Val Glu Gln Ser Glu Tyr His Met
Phe Cys Arg Glu Lys Cys Glu 195 200
205 Leu Tyr Leu Pro Glu Met Tyr Asn Lys Ile Gly Val Gly Leu
Met Ala 210 215 220
Trp Gly Pro Leu Ser Met Ala Leu Ser Asp Thr Gln Asn Gly Asp Lys 225
230 235 240 Leu Phe Leu Pro Lys
Gly Ser Phe Lys Thr Lys Ser Phe Ser Trp Thr 245
250 255 Glu Asp Glu Ile Asn Arg Asn Ala Ala Leu
Ser Pro Gln Gly Ser Trp 260 265
270 Gly Lys Asp Arg Ile Asp Glu Gly Arg Arg His Cys Asp Arg Leu
Arg 275 280 285 Asp
Leu Ala Ala Leu Ala Glu Lys Leu Gly Cys Ser Pro Thr Gln Leu 290
295 300 Ser Ile Ala Trp Ser Leu
Lys His Glu Pro Val Gln Cys Leu Leu Leu 305 310
315 320 Gly Ala Thr Ser Ala Glu Gln Leu His Gln Ser
Leu Gln Ser Leu Gln 325 330
335 Leu Leu Pro Arg Leu Ser Ser Ser Val 340
345 12823PRTArtificial sequenceMotif 128Leu Glu Leu Glu Arg Ile Leu
Glu Asn Lys Pro Val Arg Pro Pro Met 1 5
10 15 Ile Ser Thr Leu Ala Leu Arg 20
1291527DNADrosophila melanogaster 129atgacgctac tgcagaggct
tcaggccatg tcggccacca cgaccaggac aatactggag 60ggcagcatca gcagttttgg
tggcgggaca aatgagcctc tggcgagcaa aatacccgtt 120ctggaggagt ccgcctcaca
tgccagatat ttgaaattca ttgccgacgg gctcatcgac 180gagggtctgg gcagtgcggt
tggcagtggg agcagcatcg ccgtatccgt tgaagacgtg 240gtcgccggac aggcgcagga
catccaggcg agcgaaggat ccaccgacga cgccgacggc 300agtagccatt tggcattagt
cttcgtcaag tgtttcatta ttggtttcat catactggcc 360gccatcctgg gcaacatgct
ggtgattgtg tcggtcatgc ggcaccggaa attgcgcatc 420attaccaact actttgtggt
ctctctggcc gtcgccgaca tgctggtggc cctctgtgcg 480atgacattta atgcttccgt
catgatctcg ggcaagtgga tgtttggttc cgtgatgtgc 540gacatgtgga acagcttcga
cgtctacttc tccaccgcca gcatcatgca cctctgttgc 600atatcggtcg acagatacta
cgccattgtg cagccactgg actatccact aatcatgaca 660cagcgacgcg tgttcatcat
gctattgatg gtgtggctat cgccggcgct cctctcgttc 720ctgcccatct gctcgggatg
gtacacaacg accgagaact acaagtatct caaatcgaat 780ccgcatatat gcgagttcaa
agtgaacaag gcatacgcca tagtcagctc gtcgatgagc 840ttctggattc ccggcatcgt
aatgctgtcg atgtactacc gcatttacca ggaggccgac 900cgacaggagc gtctggtgta
cagatccaag gtggccgctc tgctgctgga gaagcatctg 960cagattagcc aaattcccaa
gccccggccg agcattcagg tggagcagtc gaccatctcg 1020acgatgcggc gtgagcggaa
ggccgcccgc accctgggca tcatcatgag cgccttcctc 1080atctgctggc tgccgttctt
cctctggtac atcgtatcct cgctgtgcga tagttgcatc 1140actccgcgcc tgctcgttgg
catcctgttt tggatcggct acttcaactc ggccctgaac 1200cccattattt atgcatactt
caaccgcgac ttcagggccg ccttcaagaa gaccctcaag 1260agtctgtttc cctacgcttt
ctacttctgt cgacgtggca gggggcgaga cgatgaccgg 1320gatctggagt tcggcggtcc
cagccgacgg ggaaccaatg gagcccaacg gaccggatcc 1380ggatccgccg agatggccaa
ctgcgtcaac tccacggcct cgtcggagat acacatgagc 1440gtgatgcgtg cccgccagta
tgccgtcaat gtcacaccca ccacggacgc ccagatgcag 1500cagctgcatc ccctgtacac
caactaa 1527130508PRTDrosophila
melanogaster 130Met Thr Leu Leu Gln Arg Leu Gln Ala Met Ser Ala Thr Thr
Thr Arg 1 5 10 15
Thr Ile Leu Glu Gly Ser Ile Ser Ser Phe Gly Gly Gly Thr Asn Glu
20 25 30 Pro Leu Ala Ser Lys
Ile Pro Val Leu Glu Glu Ser Ala Ser His Ala 35
40 45 Arg Tyr Leu Lys Phe Ile Ala Asp Gly
Leu Ile Asp Glu Gly Leu Gly 50 55
60 Ser Ala Val Gly Ser Gly Ser Ser Ile Ala Val Ser Val
Glu Asp Val 65 70 75
80 Val Ala Gly Gln Ala Gln Asp Ile Gln Ala Ser Glu Gly Ser Thr Asp
85 90 95 Asp Ala Asp Gly
Ser Ser His Leu Ala Leu Val Phe Val Lys Cys Phe 100
105 110 Ile Ile Gly Phe Ile Ile Leu Ala Ala
Ile Leu Gly Asn Met Leu Val 115 120
125 Ile Val Ser Val Met Arg His Arg Lys Leu Arg Ile Ile Thr
Asn Tyr 130 135 140
Phe Val Val Ser Leu Ala Val Ala Asp Met Leu Val Ala Leu Cys Ala 145
150 155 160 Met Thr Phe Asn Ala
Ser Val Met Ile Ser Gly Lys Trp Met Phe Gly 165
170 175 Ser Val Met Cys Asp Met Trp Asn Ser Phe
Asp Val Tyr Phe Ser Thr 180 185
190 Ala Ser Ile Met His Leu Cys Cys Ile Ser Val Asp Arg Tyr Tyr
Ala 195 200 205 Ile
Val Gln Pro Leu Asp Tyr Pro Leu Ile Met Thr Gln Arg Arg Val 210
215 220 Phe Ile Met Leu Leu Met
Val Trp Leu Ser Pro Ala Leu Leu Ser Phe 225 230
235 240 Leu Pro Ile Cys Ser Gly Trp Tyr Thr Thr Thr
Glu Asn Tyr Lys Tyr 245 250
255 Leu Lys Ser Asn Pro His Ile Cys Glu Phe Lys Val Asn Lys Ala Tyr
260 265 270 Ala Ile
Val Ser Ser Ser Met Ser Phe Trp Ile Pro Gly Ile Val Met 275
280 285 Leu Ser Met Tyr Tyr Arg Ile
Tyr Gln Glu Ala Asp Arg Gln Glu Arg 290 295
300 Leu Val Tyr Arg Ser Lys Val Ala Ala Leu Leu Leu
Glu Lys His Leu 305 310 315
320 Gln Ile Ser Gln Ile Pro Lys Pro Arg Pro Ser Ile Gln Val Glu Gln
325 330 335 Ser Thr Ile
Ser Thr Met Arg Arg Glu Arg Lys Ala Ala Arg Thr Leu 340
345 350 Gly Ile Ile Met Ser Ala Phe Leu
Ile Cys Trp Leu Pro Phe Phe Leu 355 360
365 Trp Tyr Ile Val Ser Ser Leu Cys Asp Ser Cys Ile Thr
Pro Arg Leu 370 375 380
Leu Val Gly Ile Leu Phe Trp Ile Gly Tyr Phe Asn Ser Ala Leu Asn 385
390 395 400 Pro Ile Ile Tyr
Ala Tyr Phe Asn Arg Asp Phe Arg Ala Ala Phe Lys 405
410 415 Lys Thr Leu Lys Ser Leu Phe Pro Tyr
Ala Phe Tyr Phe Cys Arg Arg 420 425
430 Gly Arg Gly Arg Asp Asp Asp Arg Asp Leu Glu Phe Gly Gly
Pro Ser 435 440 445
Arg Arg Gly Thr Asn Gly Ala Gln Arg Thr Gly Ser Gly Ser Ala Glu 450
455 460 Met Ala Asn Cys Val
Asn Ser Thr Ala Ser Ser Glu Ile His Met Ser 465 470
475 480 Val Met Arg Ala Arg Gln Tyr Ala Val Asn
Val Thr Pro Thr Thr Asp 485 490
495 Ala Gln Met Gln Gln Leu His Pro Leu Tyr Thr Asn
500 505 13125DNAArtificial sequencePrimer
131atgacgctac tgcagaggct tcagg
2513222DNAArtificial sequencePrimer 132ttagttggtg tacaggggat gc
221331185DNAMyzus persicae
133atggacccgc agatgtggtg gtacgacgcg ggatttgtac caggcggtgt gcagatagct
60gcagtcgtcg gtaacggcac gtgcggcgga ggtgtcggcg gcggtgtcgg tgtcgacgga
120gacgccgccg tgggcccggt gctcgtcatc aaaacggtgg ccatgtgctc gataatattg
180tgcgcggtgc tgggcaacgc tctggtggtg atcagcgtgg tacggcaccg gaagctccgc
240atactcacca attactacgt cgtgtcgctg gccttcgccg acttcctggt ggcgctgtgc
300gccatgtcgt tcaacgccag cgtcgagatc accggcaagt ggatgttcgg gtacgtcatg
360tgtgacgtct ggaacagcct ggacgtgtac ttctccaccg cttccatact gcacctgtgc
420tgcataagcg tggaccggta ctacgccatc gtcagccctc ttcagtaccc gatcaccatg
480acgcagcgca ccgtcctgta catgctgctc aacgtgtgga cgctaccagc gctcatatcg
540ttccttccga tatttttcgg ttggtatacg acagccgagc accaggcttt ccgccggaag
600aaccccatgt cgtgcgtgtt cgtcgtcaac cggtactacg cgatcatatc gtcgtctgtc
660tcgttttgga tacccggcgt cgtcatgatc gtcatgtact acaggattta caaagaagcc
720gttcgacaac ggcaagcctt gtcccggacg tccagtaata taattctgaa cagcatacat
780caacacagga ttcaacacta tagtcataga ttacggcctc cagacagcga aaacatgtca
840aatggaaacg ttacgacggc gaagaccagt acgagttgga ggaccgagca caaagctgct
900cgcacgctgg gaatcattat gggcgtattc ctattgtgct ggttgccatt tttcctttgg
960tatgtgatat cgacattatg cggagatcca tgtagcttcc cggaaacact cgtgaccgtg
1020ttgttttgga ttggttattt caattcatca ctgaacccac tgatatatgc ctacttcaat
1080agagacttca gggaagcatt caaaaatacg ctgcagtgtg tgttcccgtg ttgtcagtca
1140tgttgtccaa aagaaagcga ctcgacagcc atgagctatg tttaa
1185134394PRTMyzus persicae 134Met Asp Pro Gln Met Trp Trp Tyr Asp Ala
Gly Phe Val Pro Gly Gly 1 5 10
15 Val Gln Ile Ala Ala Val Val Gly Asn Gly Thr Cys Gly Gly Gly
Val 20 25 30 Gly
Gly Gly Val Gly Val Asp Gly Asp Ala Ala Val Gly Pro Val Leu 35
40 45 Val Ile Lys Thr Val Ala
Met Cys Ser Ile Ile Leu Cys Ala Val Leu 50 55
60 Gly Asn Ala Leu Val Val Ile Ser Val Val Arg
His Arg Lys Leu Arg 65 70 75
80 Ile Leu Thr Asn Tyr Tyr Val Val Ser Leu Ala Phe Ala Asp Phe Leu
85 90 95 Val Ala
Leu Cys Ala Met Ser Phe Asn Ala Ser Val Glu Ile Thr Gly 100
105 110 Lys Trp Met Phe Gly Tyr Val
Met Cys Asp Val Trp Asn Ser Leu Asp 115 120
125 Val Tyr Phe Ser Thr Ala Ser Ile Leu His Leu Cys
Cys Ile Ser Val 130 135 140
Asp Arg Tyr Tyr Ala Ile Val Ser Pro Leu Gln Tyr Pro Ile Thr Met 145
150 155 160 Thr Gln Arg
Thr Val Leu Tyr Met Leu Leu Asn Val Trp Thr Leu Pro 165
170 175 Ala Leu Ile Ser Phe Leu Pro Ile
Phe Phe Gly Trp Tyr Thr Thr Ala 180 185
190 Glu His Gln Ala Phe Arg Arg Lys Asn Pro Met Ser Cys
Val Phe Val 195 200 205
Val Asn Arg Tyr Tyr Ala Ile Ile Ser Ser Ser Val Ser Phe Trp Ile 210
215 220 Pro Gly Val Val
Met Ile Val Met Tyr Tyr Arg Ile Tyr Lys Glu Ala 225 230
235 240 Val Arg Gln Arg Gln Ala Leu Ser Arg
Thr Ser Ser Asn Ile Ile Leu 245 250
255 Asn Ser Ile His Gln His Arg Ile Gln His Tyr Ser His Arg
Leu Arg 260 265 270
Pro Pro Asp Ser Glu Asn Met Ser Asn Gly Asn Val Thr Thr Ala Lys
275 280 285 Thr Ser Thr Ser
Trp Arg Thr Glu His Lys Ala Ala Arg Thr Leu Gly 290
295 300 Ile Ile Met Gly Val Phe Leu Leu
Cys Trp Leu Pro Phe Phe Leu Trp 305 310
315 320 Tyr Val Ile Ser Thr Leu Cys Gly Asp Pro Cys Ser
Phe Pro Glu Thr 325 330
335 Leu Val Thr Val Leu Phe Trp Ile Gly Tyr Phe Asn Ser Ser Leu Asn
340 345 350 Pro Leu Ile
Tyr Ala Tyr Phe Asn Arg Asp Phe Arg Glu Ala Phe Lys 355
360 365 Asn Thr Leu Gln Cys Val Phe Pro
Cys Cys Gln Ser Cys Cys Pro Lys 370 375
380 Glu Ser Asp Ser Thr Ala Met Ser Tyr Val 385
390 13526DNAArtificial sequencePrimer
135gccaccatgg acccgcagat gtggtg
2613620DNAArtificial sequencePrimer 136ttaaacatag ctcatggctg
201371603DNATribolium castaneum
137atgcttaggt gggtagtgga aattcgcgtt ttccataaga ggtcgcttgc ttcgccgcaa
60agccgcgaaa agctccggag ttaccctaaa cagcacagtt tgccgcgcgt tgccgaccaa
120aaactaccat cgtccggaaa actcaaagca aaacgtgcca acattttcga caactctttg
180agacacagta accttttttt accataatgt ccaaaccacg ccaattcctc acttgaactc
240agccatgaac gagatcctcg tcataaccga cttggtgact caagcctctc tgaagaactc
300caccgacaat cccaacgaca cgtccgaggc gatccacata tccaacaact acgcgtactc
360tctccagccg acatgggcga agaactcttg gctcctctgc ttcctgctga cggtcaagac
420caccgtgatg gccctaatca taatcgccgc gttgttcggc aacctcctag tgatagtttc
480agtgatgcgc catcggaagc tgcgcgttat caccaactat ttcgtcgtga gcttagctct
540ggccgatatg ctggtcgcaa tttgggcgat gtgttttaat ttcagtgtgg agatcacggg
600cggtagatgg atatttggct actttatgtg tgacgtgtgg aactctctgg acgtgtattt
660ttcgacagcg tctattttac atttgtgttg tataagtgtg gacagatact acgccatcgt
720gcagccactc gactatccct tgatcatgac gaatgcaagg cttgcggtca tgctggccgt
780cgtgtggtgc agtccggctt tagtgtcctt cttgcccata tttatggagt ggtacacgac
840cgaggaacat ctacaattca ggaggaagca tccttacata tgcaccttca cagtcaacag
900gacctattca gttatttctt cgagcgtcag cttctgggtg cccggcatgg tcatgatatt
960catgtactac agaatttatg tggaagccga caggcaagag cggatgctct accggagtaa
1020agtagcagca gccctgctca acaaacacct gcaaatcaac ggaatatcgg caggactaac
1080ggcgcttcgt caatcggtag acgcaggact cgaatccgaa aaaactcctg atcctggaac
1140tagcagcaaa atgaaacgcg aaagaaaagc tgccaggacc ctaggcatca tcgtgtcggc
1200ctttctagct tgctggcttc ccttttttct gtggtacgtg ataacgtctc tatgtggttc
1260gaaacgttgc tacagtcccc cgtcggtgat cactttagtt ttctggatcg gttacttcaa
1320ttcggctttg aatccactaa tctacgccta tttcaatcgc gaatttcggg tggctttcaa
1380gaaaacgtta cagagttgct gccaactgag ctccaagttg gtctgttgga aatggccgag
1440gtcaaggggc gatcatcagg tgaattacag caacgcgtcg agcgagatgc acgttaataa
1500ccatctcagg actgacttac gagccgaggg tatggcgcaa agattcagct ataacatttc
1560cgaaggtgaa attattaatt tgcaaagtga agacgctatt taa
1603138452PRTTribolium castaneum 138Met Asn Glu Ile Leu Val Ile Thr Asp
Leu Val Thr Gln Ala Ser Leu 1 5 10
15 Lys Asn Ser Thr Asp Asn Pro Asn Asp Thr Ser Glu Ala Ile
His Ile 20 25 30
Ser Asn Asn Tyr Ala Tyr Ser Leu Gln Pro Thr Trp Ala Lys Asn Ser
35 40 45 Trp Leu Leu Cys
Phe Leu Leu Thr Val Lys Thr Thr Val Met Ala Leu 50
55 60 Ile Ile Ile Ala Ala Leu Phe Gly
Asn Leu Leu Val Ile Val Ser Val 65 70
75 80 Met Arg His Arg Lys Leu Arg Val Ile Thr Asn Tyr
Phe Val Val Ser 85 90
95 Leu Ala Leu Ala Asp Met Leu Val Ala Ile Trp Ala Met Cys Phe Asn
100 105 110 Phe Ser Val
Glu Ile Thr Gly Gly Arg Trp Ile Phe Gly Tyr Phe Met 115
120 125 Cys Asp Val Trp Asn Ser Leu Asp
Val Tyr Phe Ser Thr Ala Ser Ile 130 135
140 Leu His Leu Cys Cys Ile Ser Val Asp Arg Tyr Tyr Ala
Ile Val Gln 145 150 155
160 Pro Leu Asp Tyr Pro Leu Ile Met Thr Asn Ala Arg Leu Ala Val Met
165 170 175 Leu Ala Val Val
Trp Cys Ser Pro Ala Leu Val Ser Phe Leu Pro Ile 180
185 190 Phe Met Glu Trp Tyr Thr Thr Glu Glu
His Leu Gln Phe Arg Arg Lys 195 200
205 His Pro Tyr Ile Cys Thr Phe Thr Val Asn Arg Thr Tyr Ser
Val Ile 210 215 220
Ser Ser Ser Val Ser Phe Trp Val Pro Gly Met Val Met Ile Phe Met 225
230 235 240 Tyr Tyr Arg Ile Tyr
Val Glu Ala Asp Arg Gln Glu Arg Met Leu Tyr 245
250 255 Arg Ser Lys Val Ala Ala Ala Leu Leu Asn
Lys His Leu Gln Ile Asn 260 265
270 Gly Ile Ser Ala Gly Leu Thr Ala Leu Arg Gln Ser Val Asp Ala
Gly 275 280 285 Leu
Glu Ser Glu Lys Thr Pro Asp Pro Gly Thr Ser Ser Lys Met Lys 290
295 300 Arg Glu Arg Lys Ala Ala
Arg Thr Leu Gly Ile Ile Val Ser Ala Phe 305 310
315 320 Leu Ala Cys Trp Leu Pro Phe Phe Leu Trp Tyr
Val Ile Thr Ser Leu 325 330
335 Cys Gly Ser Lys Arg Cys Tyr Ser Pro Pro Ser Val Ile Thr Leu Val
340 345 350 Phe Trp
Ile Gly Tyr Phe Asn Ser Ala Leu Asn Pro Leu Ile Tyr Ala 355
360 365 Tyr Phe Asn Arg Glu Phe Arg
Val Ala Phe Lys Lys Thr Leu Gln Ser 370 375
380 Cys Cys Gln Leu Ser Ser Lys Leu Val Cys Trp Lys
Trp Pro Arg Ser 385 390 395
400 Arg Gly Asp His Gln Val Asn Tyr Ser Asn Ala Ser Ser Glu Met His
405 410 415 Val Asn Asn
His Leu Arg Thr Asp Leu Arg Ala Glu Gly Met Ala Gln 420
425 430 Arg Phe Ser Tyr Asn Ile Ser Glu
Gly Glu Ile Ile Asn Leu Gln Ser 435 440
445 Glu Asp Ala Ile 450 13930DNAArtificial
sequencePrimer 139atgcttaggt gggtagtgga aattcgcgtt
3014040DNAArtificial sequencePrimer 140ttaaatagcg
tcttcacttt gcaaattaat aatttcacct
401411329DNASpodoptera eridania 141atgaaactag aaatcgtttt ggaacctgac
aattttactt ttgacatcgc tgatttatct 60acatcaatgt atctgacgga tatttacgtt
aacaagactt tggaagttaa tgagacgacg 120aacgagttgg tgtactccaa tcaattcgaa
gatgatgccc taatagtgtt tctggtgata 180ctaaaatgtt tgataatgct ctttattata
ctggctgcta tatttggcaa tttactcgta 240atagtttcgg taatgagaca cagaaaactc
agagtgatca caaactattt cgttgtgtct 300ttagccctgg ctgatatgct tgtggcgata
tgggcaatgt gtttcaactt cagtgtggaa 360cttacaaacg gagaatggtt atttggctat
ttcatgtgtg acgtatggaa ttccttggat 420gtatactttt catcggcatc cattctccat
ctatgctgca ttagcgtcga cagatattac 480gccatcgtcc aacctctgga ctatcccctg
ataatgacga ctgcaaaatt ggggattatg 540ttggcagttg tgtggtgcag tccagcttta
gtgtcgtttc tcccaatctt catgggttgg 600tacacaactg aagatcattt gaactttaga
aagcgtttcc caaatgtgtg cagttttact 660gtgaataagg tttatgctgt ggtgtcaagt
agtgttagtt tttggatacc gggagtcatc 720atgctgtata tgtactacag aatttacttg
gaagctgaac gacaggagag gatgttatac 780aggagtaaag tagcagccct acttctggac
aaacatctgc agatcaacgg gatctcaatg 840ggcgaggtaa tgcgagagag acagagcata
caaatgcagc ccatggccag cagtaagatg 900aaaagagaga gaaaagcagc aaggaccctt
ggcatcatca tgtccgcttt cttagcgtgt 960tggctgccat tctttttatg gtacataatc
acagctctgt gtggagatgc ctgtccctcc 1020ccaccacctg tggtagctgc tgtgttttgg
gtgggatact tcaactcggc attaaacccc 1080ctcatctacg catacttcaa cagggacttc
agagctgcgt ttaggaagac cttggattct 1140tgctgcaggt ctctctgcgg cgacattgca
cgtcgctact gctgccagcg tcaacgtcgc 1200gagcaacatc attccaacgc atcctcagac
atccacatga acaattgcgt taaatcaaca 1260tccgcagatg tactgcgagc tcatcatgca
tcctgctcca ggcctgaaga tatagtcttc 1320ggaacgtag
1329142442PRTSpodoptera eridania 142Met
Lys Leu Glu Ile Val Leu Glu Pro Asp Asn Phe Thr Phe Asp Ile 1
5 10 15 Ala Asp Leu Ser Thr Ser
Met Tyr Leu Thr Asp Ile Tyr Val Asn Lys 20
25 30 Thr Leu Glu Val Asn Glu Thr Thr Asn Glu
Leu Val Tyr Ser Asn Gln 35 40
45 Phe Glu Asp Asp Ala Leu Ile Val Phe Leu Val Ile Leu Lys
Cys Leu 50 55 60
Ile Met Leu Phe Ile Ile Leu Ala Ala Ile Phe Gly Asn Leu Leu Val 65
70 75 80 Ile Val Ser Val Met
Arg His Arg Lys Leu Arg Val Ile Thr Asn Tyr 85
90 95 Phe Val Val Ser Leu Ala Leu Ala Asp Met
Leu Val Ala Ile Trp Ala 100 105
110 Met Cys Phe Asn Phe Ser Val Glu Leu Thr Asn Gly Glu Trp Leu
Phe 115 120 125 Gly
Tyr Phe Met Cys Asp Val Trp Asn Ser Leu Asp Val Tyr Phe Ser 130
135 140 Ser Ala Ser Ile Leu His
Leu Cys Cys Ile Ser Val Asp Arg Tyr Tyr 145 150
155 160 Ala Ile Val Gln Pro Leu Asp Tyr Pro Leu Ile
Met Thr Thr Ala Lys 165 170
175 Leu Gly Ile Met Leu Ala Val Val Trp Cys Ser Pro Ala Leu Val Ser
180 185 190 Phe Leu
Pro Ile Phe Met Gly Trp Tyr Thr Thr Glu Asp His Leu Asn 195
200 205 Phe Arg Lys Arg Phe Pro Asn
Val Cys Ser Phe Thr Val Asn Lys Val 210 215
220 Tyr Ala Val Val Ser Ser Ser Val Ser Phe Trp Ile
Pro Gly Val Ile 225 230 235
240 Met Leu Tyr Met Tyr Tyr Arg Ile Tyr Leu Glu Ala Glu Arg Gln Glu
245 250 255 Arg Met Leu
Tyr Arg Ser Lys Val Ala Ala Leu Leu Leu Asp Lys His 260
265 270 Leu Gln Ile Asn Gly Ile Ser Met
Gly Glu Val Met Arg Glu Arg Gln 275 280
285 Ser Ile Gln Met Gln Pro Met Ala Ser Ser Lys Met Lys
Arg Glu Arg 290 295 300
Lys Ala Ala Arg Thr Leu Gly Ile Ile Met Ser Ala Phe Leu Ala Cys 305
310 315 320 Trp Leu Pro Phe
Phe Leu Trp Tyr Ile Ile Thr Ala Leu Cys Gly Asp 325
330 335 Ala Cys Pro Ser Pro Pro Pro Val Val
Ala Ala Val Phe Trp Val Gly 340 345
350 Tyr Phe Asn Ser Ala Leu Asn Pro Leu Ile Tyr Ala Tyr Phe
Asn Arg 355 360 365
Asp Phe Arg Ala Ala Phe Arg Lys Thr Leu Asp Ser Cys Cys Arg Ser 370
375 380 Leu Cys Gly Asp Ile
Ala Arg Arg Tyr Cys Cys Gln Arg Gln Arg Arg 385 390
395 400 Glu Gln His His Ser Asn Ala Ser Ser Asp
Ile His Met Asn Asn Cys 405 410
415 Val Lys Ser Thr Ser Ala Asp Val Leu Arg Ala His His Ala Ser
Cys 420 425 430 Ser
Arg Pro Glu Asp Ile Val Phe Gly Thr 435 440
14324DNAArtificial sequencePrimer 143gccaccatga aactagaaat cgtt
2414422DNAArtificial sequencePrimer
144ctacgttccg aagactatat ct
221451560DNASpodoptera eridania 145atgcgctcac tgaacgaaac agcgtgccag
gcgctgcttg aagacgtacg gtgggacgag 60cccgtcagcc ttgtcagctt agcaatactc
gcccttattg acgtgcttgt gatcgctggt 120aactgcctgg tgatagcggc agtgctgtgc
tcctctaagc tgcgcagtgt caccaatctg 180ttcatcgtgt cgctcgcggt cgctgaccta
ttggtcggcg ttgcagtact gcctttctca 240gctactagag aagtgttcga ggtatggatc
ttcggcgacg tctggtgttc agtatggcta 300gcagtagacg tctggatgtg cacggcctcc
atcctgaacc tctgtgccat ctccctggac 360cgctacgtag ccgtcacaag acccgtcagt
taccctagca tcatgagcag aaaaagggct 420aaggctctta tagctggtct ctgggtgctg
tcttttgtca tctgtttccc gccgctggtc 480ggatggaagg ataaaaagcc tgaagaagca
gacataaaag acggttgggt ccccaacccc 540ccttgcgaat ggacctgtga gctgaccaac
gatgctggct acgtcgtcta ctcagctctc 600ggttccttct acatccccat gttcgtgatg
ctgttctttt attggaggat atacaaagcc 660gctgttagaa ccaccaaagc aattaatcag
ggttttagga ctacgaaagc ctgctctcaa 720tttgcaggca aaggtatggg cagtcggttc
gatgacaacc gactgacgct tcggatacat 780cgtggtagag gatccaatcg acctcacggg
tctccgctat cgaacgcctc caatcattct 840acgagcacct cgcttagtgc gtccccagaa
agattaagaa gacactcaag tgccaggcga 900gctcatgaga aggtgaaaat ctccgtatcc
tatccctcat cagaacaaat atgtccagct 960cacgagaatt ccatgtcttc aagtagatct
cccagtccat ctttatacgc agtccattat 1020gaacgagatg ggagggaact gacagaaagc
cggttaaggg ttcgagcttc acatcatttg 1080gctccaggac cattgtatga tgagtatgat
gataagccta ggactactag aaggatgggc 1140aagaggaata ttaaagctca ggtcaaacgc
ttccgtatgg agactaaagc agccaagacc 1200ctcggcatca tagtcggagg cttcgtgttc
tgctggcttc ccttcttcag cgtgtacgtt 1260gtgagggcgt tctgtgggga ctgtgtcagt
cccatcgtct tctccgtgct gttctggctg 1320ggatactgca actctgccat caaccccttg
atttatgcgt tattctctaa ggactttaga 1380ttcgcattca aacgcataat atgcaagtgt
ttctgcggcg gcggtggccc tagaagagag 1440tcggacggtg aaggatcccg acggcagaac
aaccgaccga ctcactccca ttcactggaa 1500gaacatgacg cgaacaacca cacctccacc
acgactagca ctagcgctgc agataggtga 1560146519PRTSpodoptera eridania
146Met Arg Ser Leu Asn Glu Thr Ala Cys Gln Ala Leu Leu Glu Asp Val 1
5 10 15 Arg Trp Asp Glu
Pro Val Ser Leu Val Ser Leu Ala Ile Leu Ala Leu 20
25 30 Ile Asp Val Leu Val Ile Ala Gly Asn
Cys Leu Val Ile Ala Ala Val 35 40
45 Leu Cys Ser Ser Lys Leu Arg Ser Val Thr Asn Leu Phe Ile
Val Ser 50 55 60
Leu Ala Val Ala Asp Leu Leu Val Gly Val Ala Val Leu Pro Phe Ser 65
70 75 80 Ala Thr Arg Glu Val
Phe Glu Val Trp Ile Phe Gly Asp Val Trp Cys 85
90 95 Ser Val Trp Leu Ala Val Asp Val Trp Met
Cys Thr Ala Ser Ile Leu 100 105
110 Asn Leu Cys Ala Ile Ser Leu Asp Arg Tyr Val Ala Val Thr Arg
Pro 115 120 125 Val
Ser Tyr Pro Ser Ile Met Ser Arg Lys Arg Ala Lys Ala Leu Ile 130
135 140 Ala Gly Leu Trp Val Leu
Ser Phe Val Ile Cys Phe Pro Pro Leu Val 145 150
155 160 Gly Trp Lys Asp Lys Lys Pro Glu Glu Ala Asp
Ile Lys Asp Gly Trp 165 170
175 Val Pro Asn Pro Pro Cys Glu Trp Thr Cys Glu Leu Thr Asn Asp Ala
180 185 190 Gly Tyr
Val Val Tyr Ser Ala Leu Gly Ser Phe Tyr Ile Pro Met Phe 195
200 205 Val Met Leu Phe Phe Tyr Trp
Arg Ile Tyr Lys Ala Ala Val Arg Thr 210 215
220 Thr Lys Ala Ile Asn Gln Gly Phe Arg Thr Thr Lys
Ala Cys Ser Gln 225 230 235
240 Phe Ala Gly Lys Gly Met Gly Ser Arg Phe Asp Asp Asn Arg Leu Thr
245 250 255 Leu Arg Ile
His Arg Gly Arg Gly Ser Asn Arg Pro His Gly Ser Pro 260
265 270 Leu Ser Asn Ala Ser Asn His Ser
Thr Ser Thr Ser Leu Ser Ala Ser 275 280
285 Pro Glu Arg Leu Arg Arg His Ser Ser Ala Arg Arg Ala
His Glu Lys 290 295 300
Val Lys Ile Ser Val Ser Tyr Pro Ser Ser Glu Gln Ile Cys Pro Ala 305
310 315 320 His Glu Asn Ser
Met Ser Ser Ser Arg Ser Pro Ser Pro Ser Leu Tyr 325
330 335 Ala Val His Tyr Glu Arg Asp Gly Arg
Glu Leu Thr Glu Ser Arg Leu 340 345
350 Arg Val Arg Ala Ser His His Leu Ala Pro Gly Pro Leu Tyr
Asp Glu 355 360 365
Tyr Asp Asp Lys Pro Arg Thr Thr Arg Arg Met Gly Lys Arg Asn Ile 370
375 380 Lys Ala Gln Val Lys
Arg Phe Arg Met Glu Thr Lys Ala Ala Lys Thr 385 390
395 400 Leu Gly Ile Ile Val Gly Gly Phe Val Phe
Cys Trp Leu Pro Phe Phe 405 410
415 Ser Val Tyr Val Val Arg Ala Phe Cys Gly Asp Cys Val Ser Pro
Ile 420 425 430 Val
Phe Ser Val Leu Phe Trp Leu Gly Tyr Cys Asn Ser Ala Ile Asn 435
440 445 Pro Leu Ile Tyr Ala Leu
Phe Ser Lys Asp Phe Arg Phe Ala Phe Lys 450 455
460 Arg Ile Ile Cys Lys Cys Phe Cys Gly Gly Gly
Gly Pro Arg Arg Glu 465 470 475
480 Ser Asp Gly Glu Gly Ser Arg Arg Gln Asn Asn Arg Pro Thr His Ser
485 490 495 His Ser
Leu Glu Glu His Asp Ala Asn Asn His Thr Ser Thr Thr Thr 500
505 510 Ser Thr Ser Ala Ala Asp Arg
515 14724DNAArtificial sequencePrimer
147gccaccatgc gctcactgaa cgaa
2414822DNAArtificial sequencePrimer 148tcacctatct gcagcgctag tg
221491557DNATribolium castaneum
149gccaccatgc gagaaacact caacgcatcc gcgtgtgcgg cgcttctcga tgctgtcaat
60tggggggatc cccaattact tctctcctta tcaatcctag ctcttatcaa tgttatggtc
120attgtgggca actgtttggt cattgctgcc gttttctgct cctccaaact gcgatcagtg
180acgaacttgt tcatcgtttc tttggctgtt gccgatttac tagtcggagt tgcagttttg
240cccttttcgg cgacttggga agtttttaag gtctggatat tcggcgacgt ttggtgcaac
300atgtggctgg ctttggacgt ctggatgtgc accgcttcca ttctcaattt gtgtgccatt
360tctctggacc gttatgtggc cgtcacgcgt cccatcacat atcccagcat catgtcccat
420tccagagcca agctcttaat cgctggctta tgggtgctca gttttgttat ctgttttccg
480ccgctggtcg ggtggaaaga gactgaaaga cgttgtcctt ggaagtgcga actgactaac
540gaggcagggt atgttgtgta ttcagccctt ggtagctttt acataccgat gtttgtcatg
600ttgttcttct actggaggat ttatcgagcg gctataagaa ccaccagggc aattaaccaa
660ggatttagga cgaccaaagg ttctcgcggt ttcggcaacc gtttcgacga gcaacgtctc
720acgttgcgca ttcatcgagg ccgtggctct tcagacaaac gtccccacgg ctcccctcac
780agcaacggca gcaacagcac caccacaagc agcgtcagcc ccagtccttc cactcgaggc
840aaacacgagc gcgtcaaaat cagcgtcagt tatccctcca gcgaaaacct ttcgcctaat
900ccaaacctcc tagctcctgc ctcacccaca cagttcgccg ttcattactc cgtgaacgga
960aaggacacca ccacggcgtt gtacaaacgc gagaaccagc tgagagtgca gagactgagc
1020tccaggagga gggcctccag gaggtcgagc agtggcgata gcgaacgcgc accaagtccg
1080agtccgagcg cttgtgaaga agggaagaag gtgatgtcga ggagaatggg caagaggaac
1140atcaaggcgc aagtgaagag gtttcgcatg gagacaaagg cggccaaaac gctggcaatc
1200atcgtcggag gttttatctt ctgttggctt ccgtttttca ccatgtatct agtgcgggcg
1260ttttgtcccg attgcattcc accgttgctc ttctccatac tcttctggct ggggtattgc
1320aacagtgcca tcaatccgct catttatgcc ctcttctcca aagacttcag attcgccttc
1380aagcgcatcg tctgcaagtg cttctgcaag ggtcgcgatg gaggcggtcg tcgcggttcc
1440gacggttcgc agctccaagg ccgccagttc cgatctccaa gctacaacgt gcagcagcag
1500ggaaattcgc tcggagacga cagtgatcca ggcgcagatc cgtcggattc gaggtga
1557150518PRTTribolium castaneum 150Ala Thr Met Arg Glu Thr Leu Asn Ala
Ser Ala Cys Ala Ala Leu Leu 1 5 10
15 Asp Ala Val Asn Trp Gly Asp Pro Gln Leu Leu Leu Ser Leu
Ser Ile 20 25 30
Leu Ala Leu Ile Asn Val Met Val Ile Val Gly Asn Cys Leu Val Ile
35 40 45 Ala Ala Val Phe
Cys Ser Ser Lys Leu Arg Ser Val Thr Asn Leu Phe 50
55 60 Ile Val Ser Leu Ala Val Ala Asp
Leu Leu Val Gly Val Ala Val Leu 65 70
75 80 Pro Phe Ser Ala Thr Trp Glu Val Phe Lys Val Trp
Ile Phe Gly Asp 85 90
95 Val Trp Cys Asn Met Trp Leu Ala Leu Asp Val Trp Met Cys Thr Ala
100 105 110 Ser Ile Leu
Asn Leu Cys Ala Ile Ser Leu Asp Arg Tyr Val Ala Val 115
120 125 Thr Arg Pro Ile Thr Tyr Pro Ser
Ile Met Ser His Ser Arg Ala Lys 130 135
140 Leu Leu Ile Ala Gly Leu Trp Val Leu Ser Phe Val Ile
Cys Phe Pro 145 150 155
160 Pro Leu Val Gly Trp Lys Glu Thr Glu Arg Arg Cys Pro Trp Lys Cys
165 170 175 Glu Leu Thr Asn
Glu Ala Gly Tyr Val Val Tyr Ser Ala Leu Gly Ser 180
185 190 Phe Tyr Ile Pro Met Phe Val Met Leu
Phe Phe Tyr Trp Arg Ile Tyr 195 200
205 Arg Ala Ala Ile Arg Thr Thr Arg Ala Ile Asn Gln Gly Phe
Arg Thr 210 215 220
Thr Lys Gly Ser Arg Gly Phe Gly Asn Arg Phe Asp Glu Gln Arg Leu 225
230 235 240 Thr Leu Arg Ile His
Arg Gly Arg Gly Ser Ser Asp Lys Arg Pro His 245
250 255 Gly Ser Pro His Ser Asn Gly Ser Asn Ser
Thr Thr Thr Ser Ser Val 260 265
270 Ser Pro Ser Pro Ser Thr Arg Gly Lys His Glu Arg Val Lys Ile
Ser 275 280 285 Val
Ser Tyr Pro Ser Ser Glu Asn Leu Ser Pro Asn Pro Asn Leu Leu 290
295 300 Ala Pro Ala Ser Pro Thr
Gln Phe Ala Val His Tyr Ser Val Asn Gly 305 310
315 320 Lys Asp Thr Thr Thr Ala Leu Tyr Lys Arg Glu
Asn Gln Leu Arg Val 325 330
335 Gln Arg Leu Ser Ser Arg Arg Arg Ala Ser Arg Arg Ser Ser Ser Gly
340 345 350 Asp Ser
Glu Arg Ala Pro Ser Pro Ser Pro Ser Ala Cys Glu Glu Gly 355
360 365 Lys Lys Val Met Ser Arg Arg
Met Gly Lys Arg Asn Ile Lys Ala Gln 370 375
380 Val Lys Arg Phe Arg Met Glu Thr Lys Ala Ala Lys
Thr Leu Ala Ile 385 390 395
400 Ile Val Gly Gly Phe Ile Phe Cys Trp Leu Pro Phe Phe Thr Met Tyr
405 410 415 Leu Val Arg
Ala Phe Cys Pro Asp Cys Ile Pro Pro Leu Leu Phe Ser 420
425 430 Ile Leu Phe Trp Leu Gly Tyr Cys
Asn Ser Ala Ile Asn Pro Leu Ile 435 440
445 Tyr Ala Leu Phe Ser Lys Asp Phe Arg Phe Ala Phe Lys
Arg Ile Val 450 455 460
Cys Lys Cys Phe Cys Lys Gly Arg Asp Gly Gly Gly Arg Arg Gly Ser 465
470 475 480 Asp Gly Ser Gln
Leu Gln Gly Arg Gln Phe Arg Ser Pro Ser Tyr Asn 485
490 495 Val Gln Gln Gln Gly Asn Ser Leu Gly
Asp Asp Ser Asp Pro Gly Ala 500 505
510 Asp Pro Ser Asp Ser Arg 515
15125DNAArtificial sequencePrimer 151gccaccatgc gagaaacact caacg
2515224DNAArtificial sequencePrimer
152tcacctcgaa tccgacggat ctgc
241532118DNAMyzus persicae 153atgaaccgga ccgagtgtca gacgctgcgc gactcgctgg
tgtggagaga cgcgcaggtg 60ttgagcaccc tggccggcct gtccttcatc gcgctcatcg
tgaccgtcgg caacacgctt 120gtcgtggccg ccgtattcaa cagttccaaa ctcaggtcac
cgaccaacac gttcatcgtt 180tcgctggccg tgtccgacct aatggtcggc gtggccgtgt
tgccgttcag cgccacctgg 240gaggtgttca aggtgtggct gttcggcgat tacctgtgct
ccgtgtggct ggccgtggac 300gtgtggatgt gcacggccag catcctgaac ctgtgcgcca
tatcgctgga caggtacctg 360gccgtaaccc ggccagtgca gtacccgagc ctgatgacca
gtttccgggc caaggtgctg 420gtggtgatcg tgtgggtgct gagcttcgtc atatgtctgc
cgccgctggt tggctggcgg 480gacactcaca taccggccga agcgtccacg gtgctgatcc
ggaacgagct gtaccggaac 540ggcaccggca gccggccgca gcaggaagag ctgccgccgt
cgtgcccgtg gatatgcgag 600ctgcccaaca acaagtggta cgtcgtgtac tcggcgctgg
gctcgttcta cataccgatg 660ttcgtgatgc tgttcttcta ctggcacatc tacaaggcgg
ccgtgcacac cacccgtgcc 720atcaaccagg gattccggac gatgcgcagc cgccggacgt
ttggcaaccg gttcgacgaa 780cagcgactca cgttgcgcat tcaccgcggc cgcggttcgt
cactcaagca ctcggccgcc 840accgcgtctc cgtcgtccgc cgccgtcatc gcggccaacg
gcccgagcgg tgggtcgccg 900gacgtgaacc ggccgccgaa cagccggcgg ccgtcggtcc
ggcgcagcaa ccacgagcgg 960atcaagatca gcgtcagcta cccgagttca gactgcataa
gcgcagcggc ggccgccgcg 1020gccgtggcca ccgtcaccac aaccaccacc tcggtggacg
cgaacggcaa ctccccgccc 1080gagacgctta gccaaaagtc gcggagctcg ttctcgtcca
cgacgtcgcc gaccagctcc 1140agtccactgt acgccgtcca ctacacggcg gccgagacgt
accaacacca gcgggccgcc 1200acggtccggt cggtggtcga cacgtccgcg tgtcagctgc
gcgtggccgg tggcagccgg 1260aaggaacacc gacggtgcag cgccggcgac acggcctcgc
cccattcgcg tctcctgttg 1320acgtcgtcac cgggcggcga ccatcaccac catcaccagc
acagcggtgg aggaatagcg 1380ggcgggcgac ccgcgtcctg ttccgtcgcg tccgtcaaag
accaactgtc gccgtcgccg 1440tcgtacgacg agtccactgg tggcggcggc ggtggcagta
gtggcggggc gggcgcgagc 1500gcgggtagcg acgtcgggct cggtcgcggc ggccttgggt
cctcaaacag caagtccaag 1560ttcgcgtcga agatgatggg cggtggcaag cggaacatca
aggcccaggt gaagcggttc 1620cggatggaga ccaaagcggc caagacgctg ggcataatcg
tcggcggttt catcgtgtgc 1680tggctacctt tcttcaccat gtacctggta agggcttttt
gccccacttg catacaaccc 1740accctgttct ccgtcatgtt ctggttgggg tactgtaaca
gcgccatcaa cccgatgatc 1800tacgcgctgt tcagcaagga cttccggttc gcgttcaagc
ggatcatatg tcggtggtgc 1860tgttgggcgt ccgccggcga ctcgacggcc ggcatcggcg
gaggacttac cgtcgccgac 1920tacggccgcc gcaaggggtc ggacggttcc cagctgggcg
ccggtggcca cggcggcgcg 1980tcgccccgga acaggtacat cgtgacgggt tccggtgccg
gggccgcggg ttccgacgag 2040tgcagcacgc gcagcatgcg actgctccag tattcggaca
gcgaaccgct caacgaaccg 2100tgttcggacg acaggtga
2118154705PRTMyzus persicae 154Met Asn Arg Thr Glu
Cys Gln Thr Leu Arg Asp Ser Leu Val Trp Arg 1 5
10 15 Asp Ala Gln Val Leu Ser Thr Leu Ala Gly
Leu Ser Phe Ile Ala Leu 20 25
30 Ile Val Thr Val Gly Asn Thr Leu Val Val Ala Ala Val Phe Asn
Ser 35 40 45 Ser
Lys Leu Arg Ser Pro Thr Asn Thr Phe Ile Val Ser Leu Ala Val 50
55 60 Ser Asp Leu Met Val Gly
Val Ala Val Leu Pro Phe Ser Ala Thr Trp 65 70
75 80 Glu Val Phe Lys Val Trp Leu Phe Gly Asp Tyr
Leu Cys Ser Val Trp 85 90
95 Leu Ala Val Asp Val Trp Met Cys Thr Ala Ser Ile Leu Asn Leu Cys
100 105 110 Ala Ile
Ser Leu Asp Arg Tyr Leu Ala Val Thr Arg Pro Val Gln Tyr 115
120 125 Pro Ser Leu Met Thr Ser Phe
Arg Ala Lys Val Leu Val Val Ile Val 130 135
140 Trp Val Leu Ser Phe Val Ile Cys Leu Pro Pro Leu
Val Gly Trp Arg 145 150 155
160 Asp Thr His Ile Pro Ala Glu Ala Ser Thr Val Leu Ile Arg Asn Glu
165 170 175 Leu Tyr Arg
Asn Gly Thr Gly Ser Arg Pro Gln Gln Glu Glu Leu Pro 180
185 190 Pro Ser Cys Pro Trp Ile Cys Glu
Leu Pro Asn Asn Lys Trp Tyr Val 195 200
205 Val Tyr Ser Ala Leu Gly Ser Phe Tyr Ile Pro Met Phe
Val Met Leu 210 215 220
Phe Phe Tyr Trp His Ile Tyr Lys Ala Ala Val His Thr Thr Arg Ala 225
230 235 240 Ile Asn Gln Gly
Phe Arg Thr Met Arg Ser Arg Arg Thr Phe Gly Asn 245
250 255 Arg Phe Asp Glu Gln Arg Leu Thr Leu
Arg Ile His Arg Gly Arg Gly 260 265
270 Ser Ser Leu Lys His Ser Ala Ala Thr Ala Ser Pro Ser Ser
Ala Ala 275 280 285
Val Ile Ala Ala Asn Gly Pro Ser Gly Gly Ser Pro Asp Val Asn Arg 290
295 300 Pro Pro Asn Ser Arg
Arg Pro Ser Val Arg Arg Ser Asn His Glu Arg 305 310
315 320 Ile Lys Ile Ser Val Ser Tyr Pro Ser Ser
Asp Cys Ile Ser Ala Ala 325 330
335 Ala Ala Ala Ala Ala Val Ala Thr Val Thr Thr Thr Thr Thr Ser
Val 340 345 350 Asp
Ala Asn Gly Asn Ser Pro Pro Glu Thr Leu Ser Gln Lys Ser Arg 355
360 365 Ser Ser Phe Ser Ser Thr
Thr Ser Pro Thr Ser Ser Ser Pro Leu Tyr 370 375
380 Ala Val His Tyr Thr Ala Ala Glu Thr Tyr Gln
His Gln Arg Ala Ala 385 390 395
400 Thr Val Arg Ser Val Val Asp Thr Ser Ala Cys Gln Leu Arg Val Ala
405 410 415 Gly Gly
Ser Arg Lys Glu His Arg Arg Cys Ser Ala Gly Asp Thr Ala 420
425 430 Ser Pro His Ser Arg Leu Leu
Leu Thr Ser Ser Pro Gly Gly Asp His 435 440
445 His His His His Gln His Ser Gly Gly Gly Ile Ala
Gly Gly Arg Pro 450 455 460
Ala Ser Cys Ser Val Ala Ser Val Lys Asp Gln Leu Ser Pro Ser Pro 465
470 475 480 Ser Tyr Asp
Glu Ser Thr Gly Gly Gly Gly Gly Gly Ser Ser Gly Gly 485
490 495 Ala Gly Ala Ser Ala Gly Ser Asp
Val Gly Leu Gly Arg Gly Gly Leu 500 505
510 Gly Ser Ser Asn Ser Lys Ser Lys Phe Ala Ser Lys Met
Met Gly Gly 515 520 525
Gly Lys Arg Asn Ile Lys Ala Gln Val Lys Arg Phe Arg Met Glu Thr 530
535 540 Lys Ala Ala Lys
Thr Leu Gly Ile Ile Val Gly Gly Phe Ile Val Cys 545 550
555 560 Trp Leu Pro Phe Phe Thr Met Tyr Leu
Val Arg Ala Phe Cys Pro Thr 565 570
575 Cys Ile Gln Pro Thr Leu Phe Ser Val Met Phe Trp Leu Gly
Tyr Cys 580 585 590
Asn Ser Ala Ile Asn Pro Met Ile Tyr Ala Leu Phe Ser Lys Asp Phe
595 600 605 Arg Phe Ala Phe
Lys Arg Ile Ile Cys Arg Trp Cys Cys Trp Ala Ser 610
615 620 Ala Gly Asp Ser Thr Ala Gly Ile
Gly Gly Gly Leu Thr Val Ala Asp 625 630
635 640 Tyr Gly Arg Arg Lys Gly Ser Asp Gly Ser Gln Leu
Gly Ala Gly Gly 645 650
655 His Gly Gly Ala Ser Pro Arg Asn Arg Tyr Ile Val Thr Gly Ser Gly
660 665 670 Ala Gly Ala
Ala Gly Ser Asp Glu Cys Ser Thr Arg Ser Met Arg Leu 675
680 685 Leu Gln Tyr Ser Asp Ser Glu Pro
Leu Asn Glu Pro Cys Ser Asp Asp 690 695
700 Arg 705 15532DNAArtificial sequencePrimer
155gccaccatga accggaccga gtgtcagacg ct
3215618DNAArtificial sequencePrimer 156tcacctgtcg tccgaaca
181571618DNADrosophila melanogaster
157atgttgttgt gcgacggact tggcccggag ccaccgcggc aaaggcatcg aaatcgaacc
60agtgccgcca ggattagaaa aagaccgaaa tgctgctgcg gcgatggcgg cagcggcaat
120caggcggagc agcccggcgg gatagttagc aacccaatta gttatggcca aagtctgaca
180acattggcgc gggtcacggc ggccgcactg accacggcgg ccatgctgca cacaacgaat
240gccctggctg ccaccggctc atccagcgca tccaactctt ccaccggcgg aatagcactg
300ccgctgggca ctgccacacc tgccacacac gaactgaatg ccacacagcc gtttggcggc
360acgggtctga agttcaacga aagcggcgct ggattaagtg accatcatca tcatcaacaa
420cacaatcccg acgaggattg gctggacaac atcgtttggg tgttcaaggc ctttgtcatg
480ctgctcatca tcattgcggc catctgcggc aatctgcttg ttattatttc tgtgatgcgt
540gttagaaaat taagagttat aacgaattac tttgtagttt ccttagccat ggctgatata
600atggtcgcta ttatggccat gacatttaac tttagtgtgc aagtaactgg gcggtggaac
660ttcagcccct tcctgtgcga tttgtggaac agcctcgatg tctacttctc aacagcgagt
720attttgcatt tatgctgcat atctgtggat agatactatg ctattgttaa gcccctcaag
780tatccgatta gcatgacgaa acgcgtggtc ggcattatgc tgctaaacac atggatatcg
840ccggcactgc tctccttctt gcccatcttc atcggctggt acaccacgcc gcagcaccag
900cagttcgtca tccagaatcc gacgcaatgc tcgttcgtgg tgaacaagta ctacgccgtc
960atctcgagct ccatatcgtt ctggataccc tgcaccatta tgatattcac ctacttggcc
1020atcttccggg aagccaatcg gcaggagaag cagctgatga tgcggcacgg caatgccatg
1080ctgatgcacc gaccatccat gcagccatca ggcgaggcgc tgagcggatc cgggtcgtcg
1140aaaacattga cgctgcacga ggtcgagcag gagcacaccc ccactaagga caagcactta
1200atcaaaatga agcgggagca caaggccgca cgcacgctgg gcatcatcat gggcaccttc
1260atcctctgct ggctgccttt cttcctgtgg tacacactct ccatgacctg cgaggtgtgc
1320caagtgccgg acatagtcgt ctcgatcctc ttctggatcg ggtacttcaa ctcaacgcta
1380aacccgctga tctacgcgta ctttaaccgc gacttccggg aggcgttccg caacacgctg
1440ctctgtctgt tctgcaattg gtggaaggat cgccacctgc ctctggacat cgacatccgg
1500cgctccagcc tacgctacga ccagcgggcg aagagcgtct actcggagag ctacctcaac
1560tcgacaacgc cctcgcatcg ccgccagtct cagatggtgg acaacttagg gcgcgccc
1618158539PRTDrosophila melanogaster 158Met Leu Leu Cys Asp Gly Leu Gly
Pro Glu Pro Pro Arg Gln Arg His 1 5 10
15 Arg Asn Arg Thr Ser Ala Ala Arg Ile Arg Lys Arg Pro
Lys Cys Cys 20 25 30
Cys Gly Asp Gly Gly Ser Gly Asn Gln Ala Glu Gln Pro Gly Gly Ile
35 40 45 Val Ser Asn Pro
Ile Ser Tyr Gly Gln Ser Leu Thr Thr Leu Ala Arg 50
55 60 Val Thr Ala Ala Ala Leu Thr Thr
Ala Ala Met Leu His Thr Thr Asn 65 70
75 80 Ala Leu Ala Ala Thr Gly Ser Ser Ser Ala Ser Asn
Ser Ser Thr Gly 85 90
95 Gly Ile Ala Leu Pro Leu Gly Thr Ala Thr Pro Ala Thr His Glu Leu
100 105 110 Asn Ala Thr
Gln Pro Phe Gly Gly Thr Gly Leu Lys Phe Asn Glu Ser 115
120 125 Gly Ala Gly Leu Ser Asp His His
His His Gln Gln His Asn Pro Asp 130 135
140 Glu Asp Trp Leu Asp Asn Ile Val Trp Val Phe Lys Ala
Phe Val Met 145 150 155
160 Leu Leu Ile Ile Ile Ala Ala Ile Cys Gly Asn Leu Leu Val Ile Ile
165 170 175 Ser Val Met Arg
Val Arg Lys Leu Arg Val Ile Thr Asn Tyr Phe Val 180
185 190 Val Ser Leu Ala Met Ala Asp Ile Met
Val Ala Ile Met Ala Met Thr 195 200
205 Phe Asn Phe Ser Val Gln Val Thr Gly Arg Trp Asn Phe Ser
Pro Phe 210 215 220
Leu Cys Asp Leu Trp Asn Ser Leu Asp Val Tyr Phe Ser Thr Ala Ser 225
230 235 240 Ile Leu His Leu Cys
Cys Ile Ser Val Asp Arg Tyr Tyr Ala Ile Val 245
250 255 Lys Pro Leu Lys Tyr Pro Ile Ser Met Thr
Lys Arg Val Val Gly Ile 260 265
270 Met Leu Leu Asn Thr Trp Ile Ser Pro Ala Leu Leu Ser Phe Leu
Pro 275 280 285 Ile
Phe Ile Gly Trp Tyr Thr Thr Pro Gln His Gln Gln Phe Val Ile 290
295 300 Gln Asn Pro Thr Gln Cys
Ser Phe Val Val Asn Lys Tyr Tyr Ala Val 305 310
315 320 Ile Ser Ser Ser Ile Ser Phe Trp Ile Pro Cys
Thr Ile Met Ile Phe 325 330
335 Thr Tyr Leu Ala Ile Phe Arg Glu Ala Asn Arg Gln Glu Lys Gln Leu
340 345 350 Met Met
Arg His Gly Asn Ala Met Leu Met His Arg Pro Ser Met Gln 355
360 365 Pro Ser Gly Glu Ala Leu Ser
Gly Ser Gly Ser Ser Lys Thr Leu Thr 370 375
380 Leu His Glu Val Glu Gln Glu His Thr Pro Thr Lys
Asp Lys His Leu 385 390 395
400 Ile Lys Met Lys Arg Glu His Lys Ala Ala Arg Thr Leu Gly Ile Ile
405 410 415 Met Gly Thr
Phe Ile Leu Cys Trp Leu Pro Phe Phe Leu Trp Tyr Thr 420
425 430 Leu Ser Met Thr Cys Glu Val Cys
Gln Val Pro Asp Ile Val Val Ser 435 440
445 Ile Leu Phe Trp Ile Gly Tyr Phe Asn Ser Thr Leu Asn
Pro Leu Ile 450 455 460
Tyr Ala Tyr Phe Asn Arg Asp Phe Arg Glu Ala Phe Arg Asn Thr Leu 465
470 475 480 Leu Cys Leu Phe
Cys Asn Trp Trp Lys Asp Arg His Leu Pro Leu Asp 485
490 495 Ile Asp Ile Arg Arg Ser Ser Leu Arg
Tyr Asp Gln Arg Ala Lys Ser 500 505
510 Val Tyr Ser Glu Ser Tyr Leu Asn Ser Thr Thr Pro Ser His
Arg Arg 515 520 525
Gln Ser Gln Met Val Asp Asn Leu Gly Arg Ala 530 535
15932DNAArtificial sequencePrimer 159gccaccatgt tgttgtgcga
cggacttggc cc 3216033DNAArtificial
sequencePrimer 160gggcgcgccc taagttgtcc accatctgag act
331611236DNATribolium castaneum 161atggacaact taacatacct
cagtacatcg acgacgcaaa tcaccaaaac ccccgaccaa 60gaatggaccc attacctcat
cgtgttcctg aaagccacca tcatgggttc gataatcgtc 120gtatcgatat tcggcaacct
ccttgttatc gtgtcggtga tgcggcatcg caaactccgc 180atcatcacca actactacgt
catctcgcta gccttcgccg acatgttggt ggcaatgttc 240gccatgacgt ttaactttag
cgtgcaaatc ttcgatacgt ggctgttcgg gtactttatg 300tgcgacgtgt ggaactcttt
agacgtttac ttttcgacgg tttcgatcct ccacctgtgc 360tgtatcagtg tagatcgcta
catcgccatc gtcaagccgc tcaaatacgc gctcagcatg 420accaagaaca tcgtcgcgtt
gatgctcctc gccacgtggg tgatgccagc ctttttgagt 480ttcctgccca tcttcatggg
ctggtacgcg acggaggagc acctcaaaga ccggttcgat 540catccggact cgtgcgagtt
caaagtcaac aagttgtacg cgatcattag tagcagtatc 600tcgttctgga ttccgtgcac
gatcatgatc tacatgtacc tggcgatctt ccgcgaggcg 660aacaagcagg aaaaagacat
gtataatagg cagggggcgg ccttgctcct ccaccagaac 720aacaccaacg gtgatatgtt
gtcgaactct ggtggttctt ccaaaacgct gactcttcac 780gaaatcaacc aggatcttca
ccacactccg accaaggagc ggaatctcaa caaaatgaag 840cgcgagcaca aagccgcgag
gactttgagt attatcatgg ggacgtttac gttgtgctgg 900ttgccctttt tcctgtggta
cgtctcgatc tcgttgtgca ccacgtgcga atgccccgac 960atggtcgtgg ggatcttgtt
ctggatcggg tacttcaatt cgacgctgaa tcccttgatt 1020tatgcctatt tcaacaagga
cttcagggaa gcgttcaaga acacgttgca gtgcgttttt 1080tgtagtttgt gccgccgtcc
gccatctgat ttagacaagt tcgatatcag aagaccgtcg 1140ataaggtatg atgatagaac
tagaagcatc tattcggaaa cttacttaaa acatattgat 1200aggaggagga gttcggagtt
tgggtcgagt ctctga 1236162411PRTTribolium
castaneum 162Met Asp Asn Leu Thr Tyr Leu Ser Thr Ser Thr Thr Gln Ile Thr
Lys 1 5 10 15 Thr
Pro Asp Gln Glu Trp Thr His Tyr Leu Ile Val Phe Leu Lys Ala
20 25 30 Thr Ile Met Gly Ser
Ile Ile Val Val Ser Ile Phe Gly Asn Leu Leu 35
40 45 Val Ile Val Ser Val Met Arg His Arg
Lys Leu Arg Ile Ile Thr Asn 50 55
60 Tyr Tyr Val Ile Ser Leu Ala Phe Ala Asp Met Leu Val
Ala Met Phe 65 70 75
80 Ala Met Thr Phe Asn Phe Ser Val Gln Ile Phe Asp Thr Trp Leu Phe
85 90 95 Gly Tyr Phe Met
Cys Asp Val Trp Asn Ser Leu Asp Val Tyr Phe Ser 100
105 110 Thr Val Ser Ile Leu His Leu Cys Cys
Ile Ser Val Asp Arg Tyr Ile 115 120
125 Ala Ile Val Lys Pro Leu Lys Tyr Ala Leu Ser Met Thr Lys
Asn Ile 130 135 140
Val Ala Leu Met Leu Leu Ala Thr Trp Val Met Pro Ala Phe Leu Ser 145
150 155 160 Phe Leu Pro Ile Phe
Met Gly Trp Tyr Ala Thr Glu Glu His Leu Lys 165
170 175 Asp Arg Phe Asp His Pro Asp Ser Cys Glu
Phe Lys Val Asn Lys Leu 180 185
190 Tyr Ala Ile Ile Ser Ser Ser Ile Ser Phe Trp Ile Pro Cys Thr
Ile 195 200 205 Met
Ile Tyr Met Tyr Leu Ala Ile Phe Arg Glu Ala Asn Lys Gln Glu 210
215 220 Lys Asp Met Tyr Asn Arg
Gln Gly Ala Ala Leu Leu Leu His Gln Asn 225 230
235 240 Asn Thr Asn Gly Asp Met Leu Ser Asn Ser Gly
Gly Ser Ser Lys Thr 245 250
255 Leu Thr Leu His Glu Ile Asn Gln Asp Leu His His Thr Pro Thr Lys
260 265 270 Glu Arg
Asn Leu Asn Lys Met Lys Arg Glu His Lys Ala Ala Arg Thr 275
280 285 Leu Ser Ile Ile Met Gly Thr
Phe Thr Leu Cys Trp Leu Pro Phe Phe 290 295
300 Leu Trp Tyr Val Ser Ile Ser Leu Cys Thr Thr Cys
Glu Cys Pro Asp 305 310 315
320 Met Val Val Gly Ile Leu Phe Trp Ile Gly Tyr Phe Asn Ser Thr Leu
325 330 335 Asn Pro Leu
Ile Tyr Ala Tyr Phe Asn Lys Asp Phe Arg Glu Ala Phe 340
345 350 Lys Asn Thr Leu Gln Cys Val Phe
Cys Ser Leu Cys Arg Arg Pro Pro 355 360
365 Ser Asp Leu Asp Lys Phe Asp Ile Arg Arg Pro Ser Ile
Arg Tyr Asp 370 375 380
Asp Arg Thr Arg Ser Ile Tyr Ser Glu Thr Tyr Leu Lys His Ile Asp 385
390 395 400 Arg Arg Arg Ser
Ser Glu Phe Gly Ser Ser Leu 405 410
16340DNAArtificial sequencePrimer 163atggacaact taacatacct cagtacatcg
acgacgcaaa 4016438DNAArtificial sequencePrimer
164tcagagactc gacccaaact ccgaactcct cctcctga
381651410DNABemisia argentifolii 165atgggcgccc tctccgacat gagcctcaat
cccaacagct tcatgctcga cgcccccgga 60ccggccccct gggcggggcc caccgccgca
gccgccctcc gcaacctctc cgccgccaac 120ctcaacgtca ctagcaattt tacctcagac
gagttttgga tggacccgga ggacgtggag 180gactgggcga gcgtggtgct gtgggtgctg
cggacgatgg tgatggcgac gatcatcctg 240gcggccatct tcgggaacct cctcgtcatc
gtgagtgtga tgcggcaccg gaagctccgg 300gtcatcacca actacttcgt cgtgagcctg
gccctcgccg acatgctcgt cgccatggtc 360gccatgacct tcaacatgag cgtccaggtc
accggcaagt ggctcttcgg cgccttcatc 420tgcgacgtct ggaacgccct cgacgtctac
ttctccaccg cctccattat ccatctctgt 480tgcatctcgg tcgataggta ctacgccatt
gtaaagccac tcaagtaccc gatcaagatg 540acgaaacgga aagtggccat catgctcttg
ctgacgtgga tctcgccggc cattatctcg 600ttcgttccta ttttctgtgg ttggtatacg
acggaagagc acaagcacta ccgcaacaac 660caccccgatg aatgtcaatt tgaggtcaac
aaattatacg ccctcatttc atcatcgata 720tccttttgga tcccttgtac aatcatgatt
tttacctact tagcaatttt caaagaagcc 780aaccggcaag aaaaacaaat tcacgcacgg
ataggcaatc aacttttaca aaaccataat 840agagaattat attcaaatac taatggagat
gtattaagca atagcggcgg ttcgagcaaa 900aacttgaccg tcaatgaagt cggggcggtg
cactcgaccc cgacgaaaga cgggagcttc 960atcaaaatga agagagagca caaagcagcc
cgaacgttag gcataataat gggcaccttc 1020atgctctgtt ggctcccctt tttcttgtgg
tacgtgatca cctcgatctg cggggacccg 1080tgtcacttct cgaacggggt ggtggccgtg
ttcttctgga tcgggtactc caactcgacg 1140ctgaacccgg tgatctacgc ctacttcaac
cgggacttcc gggaggccta ccgcaacacc 1200ctccagtgcg ccttctgctc cctctgccgg
cggccgccct ccgacctgga ggccctcgac 1260cgggacgctc gccgcgcctc cctcacctac
gcccccgcct ccggctacga cgaccgcgat 1320cgggcccgca gcacccggag catccactcc
gacacctact tcaagcacgt cgaccgccgc 1380cgctccagcc agttcggcag ctccttatga
1410166469PRTBemisia argentifolii 166Met
Gly Ala Leu Ser Asp Met Ser Leu Asn Pro Asn Ser Phe Met Leu 1
5 10 15 Asp Ala Pro Gly Pro Ala
Pro Trp Ala Gly Pro Thr Ala Ala Ala Ala 20
25 30 Leu Arg Asn Leu Ser Ala Ala Asn Leu Asn
Val Thr Ser Asn Phe Thr 35 40
45 Ser Asp Glu Phe Trp Met Asp Pro Glu Asp Val Glu Asp Trp
Ala Ser 50 55 60
Val Val Leu Trp Val Leu Arg Thr Met Val Met Ala Thr Ile Ile Leu 65
70 75 80 Ala Ala Ile Phe Gly
Asn Leu Leu Val Ile Val Ser Val Met Arg His 85
90 95 Arg Lys Leu Arg Val Ile Thr Asn Tyr Phe
Val Val Ser Leu Ala Leu 100 105
110 Ala Asp Met Leu Val Ala Met Val Ala Met Thr Phe Asn Met Ser
Val 115 120 125 Gln
Val Thr Gly Lys Trp Leu Phe Gly Ala Phe Ile Cys Asp Val Trp 130
135 140 Asn Ala Leu Asp Val Tyr
Phe Ser Thr Ala Ser Ile Ile His Leu Cys 145 150
155 160 Cys Ile Ser Val Asp Arg Tyr Tyr Ala Ile Val
Lys Pro Leu Lys Tyr 165 170
175 Pro Ile Lys Met Thr Lys Arg Lys Val Ala Ile Met Leu Leu Leu Thr
180 185 190 Trp Ile
Ser Pro Ala Ile Ile Ser Phe Val Pro Ile Phe Cys Gly Trp 195
200 205 Tyr Thr Thr Glu Glu His Lys
His Tyr Arg Asn Asn His Pro Asp Glu 210 215
220 Cys Gln Phe Glu Val Asn Lys Leu Tyr Ala Leu Ile
Ser Ser Ser Ile 225 230 235
240 Ser Phe Trp Ile Pro Cys Thr Ile Met Ile Phe Thr Tyr Leu Ala Ile
245 250 255 Phe Lys Glu
Ala Asn Arg Gln Glu Lys Gln Ile His Ala Arg Ile Gly 260
265 270 Asn Gln Leu Leu Gln Asn His Asn
Arg Glu Leu Tyr Ser Asn Thr Asn 275 280
285 Gly Asp Val Leu Ser Asn Ser Gly Gly Ser Ser Lys Asn
Leu Thr Val 290 295 300
Asn Glu Val Gly Ala Val His Ser Thr Pro Thr Lys Asp Gly Ser Phe 305
310 315 320 Ile Lys Met Lys
Arg Glu His Lys Ala Ala Arg Thr Leu Gly Ile Ile 325
330 335 Met Gly Thr Phe Met Leu Cys Trp Leu
Pro Phe Phe Leu Trp Tyr Val 340 345
350 Ile Thr Ser Ile Cys Gly Asp Pro Cys His Phe Ser Asn Gly
Val Val 355 360 365
Ala Val Phe Phe Trp Ile Gly Tyr Ser Asn Ser Thr Leu Asn Pro Val 370
375 380 Ile Tyr Ala Tyr Phe
Asn Arg Asp Phe Arg Glu Ala Tyr Arg Asn Thr 385 390
395 400 Leu Gln Cys Ala Phe Cys Ser Leu Cys Arg
Arg Pro Pro Ser Asp Leu 405 410
415 Glu Ala Leu Asp Arg Asp Ala Arg Arg Ala Ser Leu Thr Tyr Ala
Pro 420 425 430 Ala
Ser Gly Tyr Asp Asp Arg Asp Arg Ala Arg Ser Thr Arg Ser Ile 435
440 445 His Ser Asp Thr Tyr Phe
Lys His Val Asp Arg Arg Arg Ser Ser Gln 450 455
460 Phe Gly Ser Ser Leu 465
16724DNAArtificial sequencePrimer 167gccaccatgg gcgccctctc cgac
2416822DNAArtificial sequencePrimer
168tcataaggag ctgccgaact gg
221691305DNATribolium castaneum 169atggcttcat tctcagcaac attgacggca
acatcgacga acctcccgag cgtcctccaa 60aacggcacat caaacgatac aaacgtcgcc
accgtgggca accctcatcc gcactggacg 120gagttgctct tgctgatcgt gaaagggttt
attttcggaa cgataatcgt gagtgccgtg 180ttgggcaacg ctctagtgat aataagcgtc
catcgacaca gaaaactaag agtgatcacg 240aattactacg tggtgagctt ggcgatggcc
gatatgctgg tagcactgtg cgcgatgact 300ttcaacgcta gcgtggagct aacggggggc
aaatggctgt tcgggtattt catgtgtgac 360gtgtggaact ctctcgatgt gtacttttcc
accgcctcga ttttacatct gtgttgtatc 420agtgtggaca ggtactacgc catcgtgcgg
ccgttggaat atcccataac catgacccat 480cggacggttt cgttcatgct agccaacgtc
tggactctac cagcgttgat cagcttcaca 540cccatcttcc ttgggtggta cacaacggag
gatcatatcg atttcagaaa aaccaatccc 600aatgtttgta aatttgttgt caaccaatac
tacgcactta tcagcagttc cataagtttc 660tggatacctg ggatagtgat ggtaacaatg
tactgcagga tatacaaaga agcgatccgg 720caacgcaaag ctttatccag gacttcctca
aatatcatcc tgaactcaat ccaccaacac 780agaacttcct acagagacag atacggagac
catttcttgc atccttccga tggcgaattg 840accacagtcg ggcaaatcaa tggccggaga
agtacaagtt cgggatcagc agtatcgtac 900ggaactacca caaccgaatt caatacagca
atgaacagca gagacaacag taaagccgca 960accgaactca atatgaacgg cacttccatt
cgccagcagt ccaaaagctg gagagccgag 1020cacaaggccg cccgcacctt gggcataata
atgggtgctt tcatgttatg ttggcttcct 1080tttttcttat ggtatgtgat aacgacgctt
tgtggcgacg acttgtgtcc gacacccgac 1140tggctgatcg gcatgttgtt ctgggttggc
tacttcaact cggccctgaa tccgctgatt 1200tacgcctatt ttaacagaga cttccgggaa
gctttcaaag acaccctgct ctgcgcgatg 1260ccgtgctgct tcacgtgttg gaaaaatcct
gcaaggttcc tttag 1305170434PRTTribolium castaneum
170Met Ala Ser Phe Ser Ala Thr Leu Thr Ala Thr Ser Thr Asn Leu Pro 1
5 10 15 Ser Val Leu Gln
Asn Gly Thr Ser Asn Asp Thr Asn Val Ala Thr Val 20
25 30 Gly Asn Pro His Pro His Trp Thr Glu
Leu Leu Leu Leu Ile Val Lys 35 40
45 Gly Phe Ile Phe Gly Thr Ile Ile Val Ser Ala Val Leu Gly
Asn Ala 50 55 60
Leu Val Ile Ile Ser Val His Arg His Arg Lys Leu Arg Val Ile Thr 65
70 75 80 Asn Tyr Tyr Val Val
Ser Leu Ala Met Ala Asp Met Leu Val Ala Leu 85
90 95 Cys Ala Met Thr Phe Asn Ala Ser Val Glu
Leu Thr Gly Gly Lys Trp 100 105
110 Leu Phe Gly Tyr Phe Met Cys Asp Val Trp Asn Ser Leu Asp Val
Tyr 115 120 125 Phe
Ser Thr Ala Ser Ile Leu His Leu Cys Cys Ile Ser Val Asp Arg 130
135 140 Tyr Tyr Ala Ile Val Arg
Pro Leu Glu Tyr Pro Ile Thr Met Thr His 145 150
155 160 Arg Thr Val Ser Phe Met Leu Ala Asn Val Trp
Thr Leu Pro Ala Leu 165 170
175 Ile Ser Phe Thr Pro Ile Phe Leu Gly Trp Tyr Thr Thr Glu Asp His
180 185 190 Ile Asp
Phe Arg Lys Thr Asn Pro Asn Val Cys Lys Phe Val Val Asn 195
200 205 Gln Tyr Tyr Ala Leu Ile Ser
Ser Ser Ile Ser Phe Trp Ile Pro Gly 210 215
220 Ile Val Met Val Thr Met Tyr Cys Arg Ile Tyr Lys
Glu Ala Ile Arg 225 230 235
240 Gln Arg Lys Ala Leu Ser Arg Thr Ser Ser Asn Ile Ile Leu Asn Ser
245 250 255 Ile His Gln
His Arg Thr Ser Tyr Arg Asp Arg Tyr Gly Asp His Phe 260
265 270 Leu His Pro Ser Asp Gly Glu Leu
Thr Thr Val Gly Gln Ile Asn Gly 275 280
285 Arg Arg Ser Thr Ser Ser Gly Ser Ala Val Ser Tyr Gly
Thr Thr Thr 290 295 300
Thr Glu Phe Asn Thr Ala Met Asn Ser Arg Asp Asn Ser Lys Ala Ala 305
310 315 320 Thr Glu Leu Asn
Met Asn Gly Thr Ser Ile Arg Gln Gln Ser Lys Ser 325
330 335 Trp Arg Ala Glu His Lys Ala Ala Arg
Thr Leu Gly Ile Ile Met Gly 340 345
350 Ala Phe Met Leu Cys Trp Leu Pro Phe Phe Leu Trp Tyr Val
Ile Thr 355 360 365
Thr Leu Cys Gly Asp Asp Leu Cys Pro Thr Pro Asp Trp Leu Ile Gly 370
375 380 Met Leu Phe Trp Val
Gly Tyr Phe Asn Ser Ala Leu Asn Pro Leu Ile 385 390
395 400 Tyr Ala Tyr Phe Asn Arg Asp Phe Arg Glu
Ala Phe Lys Asp Thr Leu 405 410
415 Leu Cys Ala Met Pro Cys Cys Phe Thr Cys Trp Lys Asn Pro Ala
Arg 420 425 430 Phe
Leu 17136DNAArtificial sequencePrimer 171atggcttcat tctcagcaac attgacggca
acatcg 3617239DNAArtificial sequencePrimer
172ctaaaggaac cttgcaggat ttttccaaca cgtgaagca
391737285DNAArtificial sequenceOA2-GFP fusion sequence 173gacggatcgg
gagatctccc gatcccctat ggtcgactct cagtacaatc tgctctgatg 60ccgcatagtt
aagccagtat ctgctccctg cttgtgtgtt ggaggtcgct gagtagtgcg 120cgagcaaaat
ttaagctaca acaaggcaag gcttgaccga caattgcatg aagaatctgc 180ttagggttag
gcgttttgcg ctgcttcgcg atgtacgggc cagatatacg cgttgacatt 240gattattgac
tagttattaa tagtaatcaa ttacggggtc attagttcat agcccatata 300tggagttccg
cgttacataa cttacggtaa atggcccgcc tggctgaccg cccaacgacc 360cccgcccatt
gacgtcaata atgacgtatg ttcccatagt aacgccaata gggactttcc 420attgacgtca
atgggtggac tatttacggt aaactgccca cttggcagta catcaagtgt 480atcatatgcc
aagtacgccc cctattgacg tcaatgacgg taaatggccc gcctggcatt 540atgcccagta
catgacctta tgggactttc ctacttggca gtacatctac gtattagtca 600tcgctattac
catggtgatg cggttttggc agtacatcaa tgggcgtgga tagcggtttg 660actcacgggg
atttccaagt ctccacccca ttgacgtcaa tgggagtttg ttttggcacc 720aaaatcaacg
ggactttcca aaatgtcgta acaactccgc cccattgacg caaatgggcg 780gtaggcgtgt
acggtgggag gtctatataa gcagagctct ctggctaact agagaaccca 840ctgcttactg
gcttatcgaa attaatacga ctcactatag ggagacccaa gctggctagc 900gtttaaactt
aagcttggta ccgagctcgg atccactagt ccagtgtggt ggaattcgcc 960accatgacgc
tactgcagag gcttcaggcc atgtcggcca ccacgaccag gacaatactg 1020gagggcagca
tcagcagttt tggtggcggg acaaatgagc ctctggcgag caaaataccc 1080gttctggagg
agtccgcctc acatgccaga tatttgaaat tcattgccga cgggctcatc 1140gacgagggtc
tgggcagtgc ggttggcagt gggagcagca tcgccgtatc cgttgaagac 1200gtggtcgccg
gacaggcgca ggacatccag gcgagcgaag gatccaccga cgacgccgac 1260ggcagtagcc
atttggcatt agtcttcgtc aagtgtttca ttattggttt catcatactg 1320gccgccatcc
tgggcaacat gctggtgatt gtgtcggtca tgcggcaccg gaaattgcgc 1380atcattacca
actactttgt ggtctctctg gccgtcgccg acatgctggt ggccctctgt 1440gcgatgacat
ttaatgcttc cgtcatgatc tcgggcaagt ggatgtttgg ttccgtgatg 1500tgcgacatgt
ggaacagctt cgacgtctac ttctccaccg ccagcatcat gcacctctgt 1560tgcatatcgg
tcgacagata ctacgccatt gtgcagccac tggactatcc actaatcatg 1620acacagcgac
gcgtgttcat catgctattg atggtgtggc tatcgccggc gctcctctcg 1680ttcctgccca
tctgctcggg atggtacaca acgaccgaga actacaagta tctcaaatcg 1740aatccgcata
tatgcgagtt caaagtgaac aaggcatacg ccatagtcag ctcgtcgatg 1800agcttctgga
ttcccggcat cgtaatgctg tcgatgtact accgcattta ccaggaggcc 1860gaccgacagg
agcgtctggt gtacagatcc aaggtggccg ctctgctgct ggagaagcat 1920ctgcagatta
gccaaattcc caagccccgg ccgagcattc aggtggagca gtcgaccatc 1980tcgacgatgc
ggcgtgagcg gaaggccgcc cgcaccctgg gcatcatcat gagcgccttc 2040ctcatctgct
ggctgccgtt cttcctctgg tacatcgtat cctcgctgtg cgatagttgc 2100atcactccgc
gcctgctcgt tggcatcctg ttttggatcg gctacttcaa ctcggccctg 2160aaccccatta
tttatgcata cttcaaccgc gacttcaggg ccgccttcaa gaagaccctc 2220aagagtctgt
ttccctacgc tttctacttc tgtcgacgtg gcagggggcg agacgatgac 2280cgggatctgg
agttcggcgg tcccagccga cggggaacca atggagccca acggaccgga 2340tccggatccg
ccgagatggc caactgcgtc aactccacgg cctcgtcgga gatacacatg 2400agcgtgatgc
gtgcccgcca gtatgccgtc aatgtcacac ccaccacgga cgcccagatg 2460cagcagctgc
atcccctgta caccaacggc gcgcccatgg tgagcaaggg cgccgagctg 2520ttcaccggca
tcgtgcccat cctgatcgag ctgaatggcg atgtgaatgg ccacaagttc 2580agcgtgagcg
gcgagggcga gggcgatgcc acctacggca agctgaccct gaagttcatc 2640tgcaccaccg
gcaagctgcc tgtgccctgg cccaccctgg tgaccaccct gagctacggc 2700gtgcagtgct
tctcacgcta ccccgatcac atgaagcagc acgacttctt caagagcgcc 2760atgcctgagg
gctacatcca ggagcgcacc atcttcttcg aggatgacgg caactacaag 2820tcgcgcgccg
aggtgaagtt cgagggcgat accctggtga atcgcatcga gctgaccggc 2880accgatttca
aggaggatgg caacatcctg ggcaataaga tggagtacaa ctacaacgcc 2940cacaatgtgt
acatcatgac cgacaaggcc aagaatggca tcaaggtgaa cttcaagatc 3000cgccacaaca
tcgaggatgg cagcgtgcag ctggccgacc actaccagca gaataccccc 3060atcggcgatg
gccctgtgct gctgcccgat aaccactacc tgtccaccca gagcgccctg 3120tccaaggacc
ccaacgagaa gcgcgatcac atgatctact tcggcttcgt gaccgccgcc 3180gccatcaccc
acggcatgga tgagctgtac aagtgaaggg cgaattctgc agatatccag 3240cacagtggcg
gccgctcgag tctagagggc ccgtttaaac ccgctgatca gcctcgactg 3300tgccttctag
ttgccagcca tctgttgttt gcccctcccc cgtgccttcc ttgaccctgg 3360aaggtgccac
tcccactgtc ctttcctaat aaaatgagga aattgcatcg cattgtctga 3420gtaggtgtca
ttctattctg gggggtgggg tggggcagga cagcaagggg gaggattggg 3480aagacaatag
caggcatgct ggggatgcgg tgggctctat ggcttctgag gcggaaagaa 3540ccagctgggg
ctctaggggg tatccccacg cgccctgtag cggcgcatta agcgcggcgg 3600gtgtggtggt
tacgcgcagc gtgaccgcta cacttgccag cgccctagcg cccgctcctt 3660tcgctttctt
cccttccttt ctcgccacgt tcgccggctt tccccgtcaa gctctaaatc 3720ggggcatccc
tttagggttc cgatttagtg ctttacggca cctcgacccc aaaaaacttg 3780attagggtga
tggttcacgt agtgggccat cgccctgata gacggttttt cgccctttga 3840cgttggagtc
cacgttcttt aatagtggac tcttgttcca aactggaaca acactcaacc 3900ctatctcggt
ctattctttt gatttataag ggattttggg gatttcggcc tattggttaa 3960aaaatgagct
gatttaacaa aaatttaacg cgaattaatt ctgtggaatg tgtgtcagtt 4020agggtgtgga
aagtccccag gctccccagg caggcagaag tatgcaaagc atgcatctca 4080attagtcagc
aaccaggtgt ggaaagtccc caggctcccc agcaggcaga agtatgcaaa 4140gcatgcatct
caattagtca gcaaccatag tcccgcccct aactccgccc atcccgcccc 4200taactccgcc
cagttccgcc cattctccgc cccatggctg actaattttt tttatttatg 4260cagaggccga
ggccgcctct gcctctgagc tattccagaa gtagtgagga ggcttttttg 4320gaggcctagg
cttttgcaaa aagctcccgg gagcttgtat atccattttc ggatctgatc 4380agcacgtgtt
gacaattaat catcggcata gtatatcggc atagtataat acgacaaggt 4440gaggaactaa
accatggcca agttgaccag tgccgttccg gtgctcaccg cgcgcgacgt 4500cgccggagcg
gtcgagttct ggaccgaccg gctcgggttc tcccgggact tcgtggagga 4560cgacttcgcc
ggtgtggtcc gggacgacgt gaccctgttc atcagcgcgg tccaggacca 4620ggtggtgccg
gacaacaccc tggcctgggt gtgggtgcgc ggcctggacg agctgtacgc 4680cgagtggtcg
gaggtcgtgt ccacgaactt ccgggacgcc tccgggccgg ccatgaccga 4740gatcggcgag
cagccgtggg ggcgggagtt cgccctgcgc gacccggccg gcaactgcgt 4800gcacttcgtg
gccgaggagc aggactgaca cgtgctacga gatttcgatt ccaccgccgc 4860cttctatgaa
aggttgggct tcggaatcgt tttccgggac gccggctgga tgatcctcca 4920gcgcggggat
ctcatgctgg agttcttcgc ccaccccaac ttgtttattg cagcttataa 4980tggttacaaa
taaagcaata gcatcacaaa tttcacaaat aaagcatttt tttcactgca 5040ttctagttgt
ggtttgtcca aactcatcaa tgtatcttat catgtctgta taccgtcgac 5100ctctagctag
agcttggcgt aatcatggtc atagctgttt cctgtgtgaa attgttatcc 5160gctcacaatt
ccacacaaca tacgagccgg aagcataaag tgtaaagcct ggggtgccta 5220atgagtgagc
taactcacat taattgcgtt gcgctcactg cccgctttcc agtcgggaaa 5280cctgtcgtgc
cagctgcatt aatgaatcgg ccaacgcgcg gggagaggcg gtttgcgtat 5340tgggcgctct
tccgcttcct cgctcactga ctcgctgcgc tcggtcgttc ggctgcggcg 5400agcggtatca
gctcactcaa aggcggtaat acggttatcc acagaatcag gggataacgc 5460aggaaagaac
atgtgagcaa aaggccagca aaaggccagg aaccgtaaaa aggccgcgtt 5520gctggcgttt
ttccataggc tccgcccccc tgacgagcat cacaaaaatc gacgctcaag 5580tcagaggtgg
cgaaacccga caggactata aagataccag gcgtttcccc ctggaagctc 5640cctcgtgcgc
tctcctgttc cgaccctgcc gcttaccgga tacctgtccg cctttctccc 5700ttcgggaagc
gtggcgcttt ctcaatgctc acgctgtagg tatctcagtt cggtgtaggt 5760cgttcgctcc
aagctgggct gtgtgcacga accccccgtt cagcccgacc gctgcgcctt 5820atccggtaac
tatcgtcttg agtccaaccc ggtaagacac gacttatcgc cactggcagc 5880agccactggt
aacaggatta gcagagcgag gtatgtaggc ggtgctacag agttcttgaa 5940gtggtggcct
aactacggct acactagaag gacagtattt ggtatctgcg ctctgctgaa 6000gccagttacc
ttcggaaaaa gagttggtag ctcttgatcc ggcaaacaaa ccaccgctgg 6060tagcggtggt
ttttttgttt gcaagcagca gattacgcgc agaaaaaaag gatctcaaga 6120agatcctttg
atcttttcta cggggtctga cgctcagtgg aacgaaaact cacgttaagg 6180gattttggtc
atgagattat caaaaaggat cttcacctag atccttttaa attaaaaatg 6240aagttttaaa
tcaatctaaa gtatatatga gtaaacttgg tctgacagtt accaatgctt 6300aatcagtgag
gcacctatct cagcgatctg tctatttcgt tcatccatag ttgcctgact 6360ccccgtcgtg
tagataacta cgatacggga gggcttacca tctggcccca gtgctgcaat 6420gataccgcga
gacccacgct caccggctcc agatttatca gcaataaacc agccagccgg 6480aagggccgag
cgcagaagtg gtcctgcaac tttatccgcc tccatccagt ctattaattg 6540ttgccgggaa
gctagagtaa gtagttcgcc agttaatagt ttgcgcaacg ttgttgccat 6600tgctacaggc
atcgtggtgt cacgctcgtc gtttggtatg gcttcattca gctccggttc 6660ccaacgatca
aggcgagtta catgatcccc catgttgtgc aaaaaagcgg ttagctcctt 6720cggtcctccg
atcgttgtca gaagtaagtt ggccgcagtg ttatcactca tggttatggc 6780agcactgcat
aattctctta ctgtcatgcc atccgtaaga tgcttttctg tgactggtga 6840gtactcaacc
aagtcattct gagaatagtg tatgcggcga ccgagttgct cttgcccggc 6900gtcaatacgg
gataataccg cgccacatag cagaacttta aaagtgctca tcattggaaa 6960acgttcttcg
gggcgaaaac tctcaaggat cttaccgctg ttgagatcca gttcgatgta 7020acccactcgt
gcacccaact gatcttcagc atcttttact ttcaccagcg tttctgggtg 7080agcaaaaaca
ggaaggcaaa atgccgcaaa aaagggaata agggcgacac ggaaatgttg 7140aatactcata
ctcttccttt ttcaatatta ttgaagcatt tatcagggtt attgtctcat 7200gagcggatac
atatttgaat gtatttagaa aaataaacaa ataggggttc cgcgcacatt 7260tccccgaaaa
gtgccacctg acgtc
7285174750PRTArtificial sequenceOA2-GFP fusion sequence 174Met Thr Leu
Leu Gln Arg Leu Gln Ala Met Ser Ala Thr Thr Thr Arg 1 5
10 15 Thr Ile Leu Glu Gly Ser Ile Ser
Ser Phe Gly Gly Gly Thr Asn Glu 20 25
30 Pro Leu Ala Ser Lys Ile Pro Val Leu Glu Glu Ser Ala
Ser His Ala 35 40 45
Arg Tyr Leu Lys Phe Ile Ala Asp Gly Leu Ile Asp Glu Gly Leu Gly 50
55 60 Ser Ala Val Gly
Ser Gly Ser Ser Ile Ala Val Ser Val Glu Asp Val 65 70
75 80 Val Ala Gly Gln Ala Gln Asp Ile Gln
Ala Ser Glu Gly Ser Thr Asp 85 90
95 Asp Ala Asp Gly Ser Ser His Leu Ala Leu Val Phe Val Lys
Cys Phe 100 105 110
Ile Ile Gly Phe Ile Ile Leu Ala Ala Ile Leu Gly Asn Met Leu Val
115 120 125 Ile Val Ser Val
Met Arg His Arg Lys Leu Arg Ile Ile Thr Asn Tyr 130
135 140 Phe Val Val Ser Leu Ala Val Ala
Asp Met Leu Val Ala Leu Cys Ala 145 150
155 160 Met Thr Phe Asn Ala Ser Val Met Ile Ser Gly Lys
Trp Met Phe Gly 165 170
175 Ser Val Met Cys Asp Met Trp Asn Ser Phe Asp Val Tyr Phe Ser Thr
180 185 190 Ala Ser Ile
Met His Leu Cys Cys Ile Ser Val Asp Arg Tyr Tyr Ala 195
200 205 Ile Val Gln Pro Leu Asp Tyr Pro
Leu Ile Met Thr Gln Arg Arg Val 210 215
220 Phe Ile Met Leu Leu Met Val Trp Leu Ser Pro Ala Leu
Leu Ser Phe 225 230 235
240 Leu Pro Ile Cys Ser Gly Trp Tyr Thr Thr Thr Glu Asn Tyr Lys Tyr
245 250 255 Leu Lys Ser Asn
Pro His Ile Cys Glu Phe Lys Val Asn Lys Ala Tyr 260
265 270 Ala Ile Val Ser Ser Ser Met Ser Phe
Trp Ile Pro Gly Ile Val Met 275 280
285 Leu Ser Met Tyr Tyr Arg Ile Tyr Gln Glu Ala Asp Arg Gln
Glu Arg 290 295 300
Leu Val Tyr Arg Ser Lys Val Ala Ala Leu Leu Leu Glu Lys His Leu 305
310 315 320 Gln Ile Ser Gln Ile
Pro Lys Pro Arg Pro Ser Ile Gln Val Glu Gln 325
330 335 Ser Thr Ile Ser Thr Met Arg Arg Glu Arg
Lys Ala Ala Arg Thr Leu 340 345
350 Gly Ile Ile Met Ser Ala Phe Leu Ile Cys Trp Leu Pro Phe Phe
Leu 355 360 365 Trp
Tyr Ile Val Ser Ser Leu Cys Asp Ser Cys Ile Thr Pro Arg Leu 370
375 380 Leu Val Gly Ile Leu Phe
Trp Ile Gly Tyr Phe Asn Ser Ala Leu Asn 385 390
395 400 Pro Ile Ile Tyr Ala Tyr Phe Asn Arg Asp Phe
Arg Ala Ala Phe Lys 405 410
415 Lys Thr Leu Lys Ser Leu Phe Pro Tyr Ala Phe Tyr Phe Cys Arg Arg
420 425 430 Gly Arg
Gly Arg Asp Asp Asp Arg Asp Leu Glu Phe Gly Gly Pro Ser 435
440 445 Arg Arg Gly Thr Asn Gly Ala
Gln Arg Thr Gly Ser Gly Ser Ala Glu 450 455
460 Met Ala Asn Cys Val Asn Ser Thr Ala Ser Ser Glu
Ile His Met Ser 465 470 475
480 Val Met Arg Ala Arg Gln Tyr Ala Val Asn Val Thr Pro Thr Thr Asp
485 490 495 Ala Gln Met
Gln Gln Leu His Pro Leu Tyr Thr Asn Gly Ala Pro Met 500
505 510 Val Ser Lys Gly Ala Glu Leu Phe
Thr Gly Ile Val Pro Ile Leu Ile 515 520
525 Glu Leu Asn Gly Asp Val Asn Gly His Lys Phe Ser Val
Ser Gly Glu 530 535 540
Gly Glu Gly Asp Ala Thr Tyr Gly Lys Leu Thr Leu Lys Phe Ile Cys 545
550 555 560 Thr Thr Gly Lys
Leu Pro Val Pro Trp Pro Thr Leu Val Thr Thr Leu 565
570 575 Ser Tyr Gly Val Gln Cys Phe Ser Arg
Tyr Pro Asp His Met Lys Gln 580 585
590 His Asp Phe Phe Lys Ser Ala Met Pro Glu Gly Tyr Ile Gln
Glu Arg 595 600 605
Thr Ile Phe Phe Glu Asp Asp Gly Asn Tyr Lys Ser Arg Ala Glu Val 610
615 620 Lys Phe Glu Gly Asp
Thr Leu Val Asn Arg Ile Glu Leu Thr Gly Thr 625 630
635 640 Asp Phe Lys Glu Asp Gly Asn Ile Leu Gly
Asn Lys Met Glu Tyr Asn 645 650
655 Tyr Asn Ala His Asn Val Tyr Ile Met Thr Asp Lys Ala Lys Asn
Gly 660 665 670 Ile
Lys Val Asn Phe Lys Ile Arg His Asn Ile Glu Asp Gly Ser Val 675
680 685 Gln Leu Ala Asp His Tyr
Gln Gln Asn Thr Pro Ile Gly Asp Gly Pro 690 695
700 Val Leu Leu Pro Asp Asn His Tyr Leu Ser Thr
Gln Ser Ala Leu Ser 705 710 715
720 Lys Asp Pro Asn Glu Lys Arg Asp His Met Ile Tyr Phe Gly Phe Val
725 730 735 Thr Ala
Ala Ala Ile Thr His Gly Met Asp Glu Leu Tyr Lys 740
745 750 17541DNAArtificial sequencePrimer
175ctgcatcccc tgtacaccaa cggcgcgccc atggtgagca a
4117645DNAArtificial sequencePrimer 176ggatatctgc agaattcgcc cttcacttgt
acagctcatc catgc 45177331PRTArtificialMotif 177Lys
Xaa Xaa Xaa Xaa Xaa Xaa Ile Ile Xaa Xaa Ala Xaa Xaa Gly Asn 1
5 10 15 Xaa Leu Val Xaa Xaa Ser
Val Xaa Arg His Arg Lys Leu Arg Xaa Xaa 20
25 30 Thr Asn Tyr Xaa Val Val Ser Leu Ala Xaa
Ala Asp Xaa Leu Val Ala 35 40
45 Xaa Xaa Ala Met Xaa Phe Asn Xaa Ser Val Xaa Xaa Xaa Xaa
Gly Xaa 50 55 60
Trp Xaa Phe Gly Xaa Xaa Met Cys Asp Xaa Trp Asn Ser Xaa Asp Val 65
70 75 80 Tyr Phe Ser Xaa Ala
Ser Ile Xaa His Leu Cys Cys Ile Ser Val Asp 85
90 95 Arg Tyr Tyr Ala Ile Val Xaa Pro Leu Xaa
Tyr Pro Xaa Xaa Met Thr 100 105
110 Xaa Xaa Xaa Xaa Xaa Xaa Met Leu Xaa Xaa Val Trp Xaa Xaa Pro
Ala 115 120 125 Leu
Xaa Ser Phe Leu Pro Ile Xaa Xaa Xaa Trp Tyr Thr Thr Xaa Xaa 130
135 140 Xaa Xaa Xaa Xaa Xaa Xaa
Xaa Xaa Pro Xaa Xaa Cys Xaa Phe Xaa Val 145 150
155 160 Asn Xaa Xaa Tyr Xaa Xaa Xaa Ser Ser Ser Xaa
Ser Phe Trp Xaa Pro 165 170
175 Gly Xaa Xaa Met Xaa Xaa Met Tyr Tyr Arg Ile Tyr Xaa Glu Ala Xaa
180 185 190 Arg Gln
Xaa Xaa Xaa Xaa Xaa Arg Xaa Xaa Xaa Xaa Xaa Xaa Leu Xaa 195
200 205 Xaa Xaa His Xaa Xaa Xaa Xaa
Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 210 215
220 Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa
Xaa Xaa Xaa Xaa 225 230 235
240 Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Glu Xaa
245 250 255 Lys Ala Ala
Arg Thr Leu Gly Ile Ile Xaa Xaa Xaa Phe Leu Xaa Cys 260
265 270 Trp Leu Pro Phe Phe Leu Trp Tyr
Xaa Xaa Xaa Xaa Leu Cys Xaa Xaa 275 280
285 Xaa Xaa Cys Xaa Xaa Pro Xaa Xaa Xaa Xaa Xaa Xaa Xaa
Phe Trp Xaa 290 295 300
Gly Tyr Phe Asn Ser Xaa Leu Asn Pro Xaa Ile Tyr Ala Tyr Phe Asn 305
310 315 320 Arg Xaa Phe Arg
Xaa Ala Phe Xaa Xaa Thr Leu 325 330
178653PRTArtificialMotif 178Asn Xaa Xaa Xaa Cys Xaa Xaa Leu Xaa Xaa Xaa
Xaa Xaa Trp Xaa Xaa 1 5 10
15 Xaa Xaa Xaa Leu Xaa Xaa Leu Xaa Xaa Leu Xaa Xaa Ile Xaa Xaa Xaa
20 25 30 Val Xaa
Xaa Gly Asn Xaa Leu Val Xaa Ala Ala Val Xaa Xaa Ser Ser 35
40 45 Lys Leu Arg Ser Xaa Thr Asn
Xaa Phe Ile Val Ser Leu Ala Val Xaa 50 55
60 Asp Leu Xaa Val Gly Val Ala Val Leu Pro Phe Ser
Ala Thr Xaa Glu 65 70 75
80 Val Phe Xaa Val Trp Xaa Phe Gly Asp Xaa Xaa Cys Xaa Xaa Trp Leu
85 90 95 Ala Xaa Asp
Val Trp Met Cys Thr Ala Ser Ile Leu Asn Leu Cys Ala 100
105 110 Ile Ser Leu Asp Arg Tyr Xaa Ala
Val Thr Arg Pro Xaa Xaa Tyr Pro 115 120
125 Ser Xaa Met Xaa Xaa Xaa Arg Ala Lys Xaa Leu Xaa Xaa
Xaa Xaa Trp 130 135 140
Val Leu Ser Phe Val Ile Cys Xaa Pro Pro Leu Val Gly Trp Xaa Xaa 145
150 155 160 Xaa Xaa Xaa Xaa
Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 165
170 175 Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa
Xaa Xaa Xaa Xaa Xaa Xaa Xaa 180 185
190 Xaa Cys Xaa Trp Xaa Cys Glu Leu Xaa Asn Xaa Xaa Xaa Tyr
Val Val 195 200 205
Tyr Ser Ala Leu Gly Ser Phe Tyr Ile Pro Met Phe Val Met Leu Phe 210
215 220 Phe Tyr Trp Xaa Ile
Tyr Xaa Ala Ala Xaa Xaa Thr Thr Xaa Ala Ile 225 230
235 240 Asn Gln Gly Phe Arg Thr Xaa Xaa Xaa Xaa
Xaa Xaa Xaa Xaa Xaa Xaa 245 250
255 Xaa Xaa Gly Xaa Arg Phe Asp Xaa Xaa Arg Leu Thr Leu Arg Ile
His 260 265 270 Arg
Gly Arg Gly Ser Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 275
280 285 Xaa Xaa Xaa Xaa Xaa Xaa
Xaa Xaa Xaa Xaa Xaa Ser Xaa Xaa Xaa Xaa 290 295
300 Xaa Xaa Xaa Xaa Pro Xaa Xaa Xaa Xaa Xaa Xaa
Xaa Xaa Xaa Arg Xaa 305 310 315
320 Xaa His Glu Xaa Xaa Lys Ile Ser Val Ser Tyr Pro Ser Ser Xaa Xaa
325 330 335 Xaa Xaa
Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 340
345 350 Xaa Xaa Xaa Xaa Xaa Xaa Xaa
Xaa Xaa Xaa Xaa Xaa Glu Xaa Xaa Xaa 355 360
365 Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa
Xaa Xaa Xaa Ser 370 375 380
Xaa Xaa Xaa Xaa Ala Val His Tyr Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 385
390 395 400 Xaa Xaa Xaa
Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 405
410 415 Leu Arg Val Xaa Xaa Xaa Xaa Xaa
Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 420 425
430 Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa
Xaa Xaa Xaa 435 440 445
Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 450
455 460 Xaa Xaa Xaa Xaa
Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 465 470
475 480 Xaa Pro Xaa Pro Xaa Xaa Xaa Xaa Xaa
Xaa Xaa Xaa Xaa Xaa Xaa Xaa 485 490
495 Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa
Xaa Xaa 500 505 510
Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa
515 520 525 Xaa Met Gly Xaa
Xaa Lys Arg Asn Ile Lys Ala Gln Val Lys Arg Phe 530
535 540 Arg Met Glu Thr Lys Ala Ala Lys
Thr Leu Xaa Ile Ile Val Gly Gly 545 550
555 560 Phe Xaa Xaa Cys Trp Leu Pro Phe Phe Xaa Xaa Tyr
Xaa Val Arg Ala 565 570
575 Phe Cys Xaa Xaa Cys Xaa Xaa Pro Xaa Xaa Phe Ser Xaa Xaa Phe Trp
580 585 590 Leu Gly Tyr
Cys Asn Ser Ala Ile Asn Pro Xaa Ile Tyr Ala Leu Phe 595
600 605 Ser Lys Asp Phe Arg Phe Ala Phe
Lys Arg Ile Xaa Cys Xaa Xaa Xaa 610 615
620 Cys Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa
Xaa Xaa Xaa 625 630 635
640 Xaa Xaa Xaa Xaa Xaa Gly Xaa Arg Xaa Xaa Ser Asp Gly
645 650 179398PRTArtificialMotif 179Met Xaa
Xaa Ile Ile Xaa Xaa Xaa Ile Xaa Gly Asn Leu Leu Val Ile 1 5
10 15 Xaa Ser Val Met Arg Xaa Arg
Lys Leu Arg Xaa Ile Thr Asn Tyr Xaa 20 25
30 Val Xaa Ser Leu Ala Xaa Ala Asp Xaa Xaa Val Ala
Xaa Xaa Ala Met 35 40 45
Thr Phe Asn Xaa Ser Val Gln Xaa Xaa Xaa Xaa Trp Xaa Phe Xaa Xaa
50 55 60 Phe Xaa Cys
Asp Xaa Trp Asn Xaa Leu Asp Val Tyr Phe Ser Thr Xaa 65
70 75 80 Ser Ile Xaa His Leu Cys Cys
Ile Ser Val Asp Arg Tyr Xaa Ala Ile 85
90 95 Val Lys Pro Leu Lys Tyr Xaa Xaa Xaa Met Thr
Lys Xaa Xaa Val Xaa 100 105
110 Xaa Met Leu Leu Xaa Thr Trp Xaa Xaa Pro Ala Xaa Xaa Ser Phe
Xaa 115 120 125 Pro
Ile Phe Xaa Gly Trp Tyr Xaa Thr Xaa Xaa His Xaa Xaa Xaa Xaa 130
135 140 Xaa Xaa Xaa Pro Xaa Xaa
Cys Xaa Phe Xaa Val Asn Lys Xaa Tyr Ala 145 150
155 160 Xaa Ile Ser Ser Ser Ile Ser Phe Trp Ile Pro
Cys Thr Ile Met Ile 165 170
175 Xaa Xaa Tyr Leu Ala Ile Phe Xaa Glu Ala Asn Xaa Gln Glu Lys Xaa
180 185 190 Xaa Xaa
Xaa Arg Xaa Gly Xaa Xaa Xaa Leu Xaa Xaa Xaa Xaa Xaa Xaa 195
200 205 Xaa Xaa Xaa Xaa Xaa Xaa Gly
Xaa Xaa Leu Ser Xaa Ser Gly Xaa Ser 210 215
220 Ser Lys Xaa Leu Thr Xaa Xaa Glu Xaa Xaa Xaa Xaa
Xaa Xaa Xaa Thr 225 230 235
240 Pro Thr Lys Xaa Xaa Xaa Xaa Xaa Lys Met Lys Arg Glu His Lys Ala
245 250 255 Ala Arg Thr
Leu Xaa Ile Ile Met Gly Thr Phe Xaa Leu Cys Trp Leu 260
265 270 Pro Phe Phe Leu Trp Tyr Xaa Xaa
Xaa Xaa Xaa Cys Xaa Xaa Xaa Cys 275 280
285 Xaa Xaa Xaa Xaa Xaa Val Val Xaa Xaa Xaa Phe Trp Ile
Gly Tyr Xaa 290 295 300
Asn Ser Thr Leu Asn Pro Xaa Ile Tyr Ala Tyr Phe Asn Xaa Asp Phe 305
310 315 320 Arg Glu Ala Xaa
Xaa Asn Thr Leu Xaa Cys Xaa Phe Cys Xaa Xaa Xaa 325
330 335 Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa
Xaa Asp Xaa Xaa Xaa Arg Arg 340 345
350 Xaa Ser Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Tyr Asp Xaa Arg
Xaa Xaa 355 360 365
Xaa Xaa Xaa Xaa Xaa Ser Xaa Xaa Ser Xaa Xaa Tyr Xaa Xaa Xaa Xaa 370
375 380 Xaa Xaa Xaa Xaa Arg
Arg Xaa Ser Xaa Xaa Xaa Xaa Xaa Leu 385 390
395 1806PRTArtificialMotif 180Arg His Arg Lys Leu Arg 1
5 1815PRTArtificialMotif 181Val Val Ser Leu Ala 1
5 1825PRTArtificialMotif 182Asp Val Tyr Phe Ser 1 5
18314PRTArtificialMotif 183His Leu Cys Cys Ile Ser Val Asp Arg Tyr Tyr
Ala Ile Val 1 5 10
1845PRTArtificialMotif 184Ser Phe Leu Pro Ile 1 5
1854PRTArtificialMotif 185Trp Tyr Thr Thr 1
1866PRTArtificialMotif 186Met Tyr Tyr Arg Ile Tyr 1 5
1879PRTArtificialMotif 187Lys Ala Ala Arg Thr Leu Gly Ile Ile 1
5 1889PRTArtificialMotif 188Cys Trp Leu Pro Phe Phe
Leu Trp Tyr 1 5 1895PRTArtificialMotif
189Gly Tyr Phe Asn Ser 1 5 1907PRTArtificialMotif 190Ile
Tyr Ala Tyr Phe Asn Arg 1 5
1916PRTArtificialMotif 191Ser Ser Lys Leu Arg Ser 1 5
1927PRTArtificialMotif 192Phe Ile Val Ser Leu Ala Val 1 5
19311PRTArtificialMotif 193Val Gly Val Ala Val Leu Pro Phe Ser
Ala Thr 1 5 10
19420PRTArtificialMotif 194Asp Val Trp Met Cys Thr Ala Ser Ile Leu Asn
Leu Cys Ala Ile Ser 1 5 10
15 Leu Asp Arg Tyr 20 1955PRTArtificialMotif 195Ala
Val Thr Arg Pro 1 5 1968PRTArtificialMotif 196Trp Val Leu
Ser Phe Val Ile Cys 1 5
1976PRTArtificialMotif 197Pro Pro Leu Val Gly Trp 1 5
19822PRTArtificialMotif 198Tyr Val Val Tyr Ser Ala Leu Gly Ser Phe Tyr
Ile Pro Met Phe Val 1 5 10
15 Met Leu Phe Phe Tyr Trp 20
1998PRTArtificialMotif 199Ala Ile Asn Gln Gly Phe Arg Thr 1
5 20012PRTArtificialMotif 200Arg Leu Thr Leu Arg Ile His
Arg Gly Arg Gly Ser 1 5 10
2019PRTArtificialMotif 201Lys Ile Ser Val Ser Tyr Pro Ser Ser 1
5 2024PRTArtificialMotif 202Ala Val His Tyr 1
20321PRTArtificialMotif 203Lys Arg Asn Ile Lys Ala Gln Val Lys
Arg Phe Arg Met Glu Thr Lys 1 5 10
15 Ala Ala Lys Thr Leu 20
2046PRTArtificialMotif 204Ile Ile Val Gly Gly Phe 1 5
2056PRTArtificialMotif 205Cys Trp Leu Pro Phe Phe 1 5
2065PRTArtificialMotif 206Val Arg Ala Phe Cys 1 5
20712PRTArtificialMotif 207Phe Trp Leu Gly Tyr Cys Asn Ser Ala Ile Asn
Pro 1 5 10
20816PRTArtificialMotif 208Ile Tyr Ala Leu Phe Ser Lys Asp Phe Arg Phe
Ala Phe Lys Arg Ile 1 5 10
15 2096PRTArtificialMotif 209Gly Asn Leu Leu Val Ile 1
5 2104PRTArtificialMotif 210Ser Val Met Arg 1
2114PRTArtificialMotif 211Arg Lys Leu Arg 1
2124PRTArtificialMotif 212Ile Thr Asn Tyr 1
2135PRTArtificialMotif 213Ala Met Thr Phe Asn 1 5
2147PRTArtificialMotif 214Leu Asp Val Tyr Phe Ser Thr 1 5
21510PRTArtificialMotif 215His Leu Cys Cys Ile Ser Val Asp Arg
Tyr 1 5 10 2168PRTArtificialMotif 216Ala
Ile Val Lys Pro Leu Lys Tyr 1 5
21715PRTArtificialMotif 217Ile Ser Ser Ser Ile Ser Phe Trp Ile Pro Cys
Thr Ile Met Ile 1 5 10
15 2185PRTArtificialMotif 218Tyr Leu Ala Ile Phe 1 5
2194PRTArtificialMotif 219Thr Pro Thr Lys 1
22012PRTArtificialMotif 220Lys Met Lys Arg Glu His Lys Ala Ala Arg Thr
Leu 1 5 10
2216PRTArtificialMotif 221Ile Ile Met Gly Thr Phe 1 5
22210PRTArtificialMotif 222Leu Cys Trp Leu Pro Phe Phe Leu Trp Tyr 1
5 10 2235PRTArtificialMotif 223Phe Trp Ile
Gly Tyr 1 5 2246PRTArtificialMotif 224Asn Ser Thr Leu Asn
Pro 1 5 2256PRTArtificialMotif 225Ile Tyr Ala Tyr Phe
Asn 1 5 2265PRTArtificialMotif 226Asp Phe Arg Glu Ala
1 5 2271722DNADrosophila melanogaster 227atgaaaacac
cttccattgc gaaccgggaa cagatctcat ctggatgcaa cgaagaagcg 60gccgaggcac
tagtgggtat ccactcagac taccctaggt atatggaaga acgtgctctt 120actggcggca
atacgtccag gaagccatca acaaactcgg ccaaacacaa acccaatgtg 180ggctatcgcc
tgggaaagag gaaagccctc ttcgagaagc gcaaacggat cagcgattac 240gccctggtca
tgggcatgtt cgggatcatc gtgatggtta tcgaaaacga actgagcagt 300gccggtgtct
acacaaaggc atcgttctac tcgacagcgt taaaaacctt aatatctgtt 360tcgactgtga
ttcttttagg acttatagta gcttaccatg ctttggaagt gcagttattc 420atgatagata
actgcgctga cgattggagg atcgcaatga catggcaacg aattagtcaa 480atagggttag
aactttttat atgcgctata catccaattc ctggcgaata ctatttccag 540tggacgacga
aattggccaa taagaataaa acaattggca ccgaaatggt gccatatgac 600gtagctttat
cattacctat gttccttcga ttatatttaa tctgccgcgt aatgctgctg 660cattcaaagc
tattcacaga tgcatcatca cggagcattg gcgctctcaa taggattaat 720tttaacacaa
gattcgtttt aaaaactcta atgacaatat gtccgggaac ggttctattg 780gtcttcatgg
tctcgctgtg gatcatcgca tcgtggacgc tgcgtcagtg cgaaagattt 840catgatgaag
aacacgcgaa tcttttgaat gcaatgtggc tgatagcgat aacatttttg 900agtgttggtt
tcggtgatat tgttccgaat acgtactgtg gacgtggtat cgctgtcagt 960acaggaataa
tgggcgccgg ctgtacggct ctactggtgg ccgtagtctc tcggaaactg 1020gagctgaccc
gtgctgagaa gcatgtgcac aacttcatga tggacacgca gttgacgaaa 1080cggctgaaaa
atgctgcggc gaatgttctg cgtgaaactt ggctcattta caaacataca 1140agactagtaa
aacgggttaa tcccggccgt gtaagaaccc accaaagaaa gttccttcta 1200gctatatatg
cgttgcgaaa agttaaaatg gatcagcgca aactaatgga taatgcaaac 1260acaataactg
acatggctaa gacacaaaac acggtctacg agataatatc ggacatgtct 1320agccgtcagg
atgccatcga agagcgttta accaacctag aggacaaaat gcagagcata 1380caagagcaca
tggaaagcct tccagaccta ttgtctcgat gtctgaccca gcaccaggag 1440cggatcgagc
agcggcggaa ctttttacat cctgacacag ctgcagttgc ccccattcaa 1500gcgccaacgc
cccaatcgat gttcaatgca gcgcccatgc tgtttccaca ttctagaagt 1560gttccctcat
ccaataacgc cgctgctact taccattggc caacaagccc tattttgcca 1620cctatatcta
gtagaacacc acatttagtg cctgatactc acatgccatc aaatggatct 1680gcagttaata
gctacgcatc ttccaacaaa tacggcagct ga
1722228573PRTDrosophila melanogaster 228Met Lys Thr Pro Ser Ile Ala Asn
Arg Glu Gln Ile Ser Ser Gly Cys 1 5 10
15 Asn Glu Glu Ala Ala Glu Ala Leu Val Gly Ile His Ser
Asp Tyr Pro 20 25 30
Arg Tyr Met Glu Glu Arg Ala Leu Thr Gly Gly Asn Thr Ser Arg Lys
35 40 45 Pro Ser Thr Asn
Ser Ala Lys His Lys Pro Asn Val Gly Tyr Arg Leu 50
55 60 Gly Lys Arg Lys Ala Leu Phe Glu
Lys Arg Lys Arg Ile Ser Asp Tyr 65 70
75 80 Ala Leu Val Met Gly Met Phe Gly Ile Ile Val Met
Val Ile Glu Asn 85 90
95 Glu Leu Ser Ser Ala Gly Val Tyr Thr Lys Ala Ser Phe Tyr Ser Thr
100 105 110 Ala Leu Lys
Thr Leu Ile Ser Val Ser Thr Val Ile Leu Leu Gly Leu 115
120 125 Ile Val Ala Tyr His Ala Leu Glu
Val Gln Leu Phe Met Ile Asp Asn 130 135
140 Cys Ala Asp Asp Trp Arg Ile Ala Met Thr Trp Gln Arg
Ile Ser Gln 145 150 155
160 Ile Gly Leu Glu Leu Phe Ile Cys Ala Ile His Pro Ile Pro Gly Glu
165 170 175 Tyr Tyr Phe Gln
Trp Thr Thr Lys Leu Ala Asn Lys Asn Lys Thr Ile 180
185 190 Gly Thr Glu Met Val Pro Tyr Asp Val
Ala Leu Ser Leu Pro Met Phe 195 200
205 Leu Arg Leu Tyr Leu Ile Cys Arg Val Met Leu Leu His Ser
Lys Leu 210 215 220
Phe Thr Asp Ala Ser Ser Arg Ser Ile Gly Ala Leu Asn Arg Ile Asn 225
230 235 240 Phe Asn Thr Arg Phe
Val Leu Lys Thr Leu Met Thr Ile Cys Pro Gly 245
250 255 Thr Val Leu Leu Val Phe Met Val Ser Leu
Trp Ile Ile Ala Ser Trp 260 265
270 Thr Leu Arg Gln Cys Glu Arg Phe His Asp Glu Glu His Ala Asn
Leu 275 280 285 Leu
Asn Ala Met Trp Leu Ile Ala Ile Thr Phe Leu Ser Val Gly Phe 290
295 300 Gly Asp Ile Val Pro Asn
Thr Tyr Cys Gly Arg Gly Ile Ala Val Ser 305 310
315 320 Thr Gly Ile Met Gly Ala Gly Cys Thr Ala Leu
Leu Val Ala Val Val 325 330
335 Ser Arg Lys Leu Glu Leu Thr Arg Ala Glu Lys His Val His Asn Phe
340 345 350 Met Met
Asp Thr Gln Leu Thr Lys Arg Leu Lys Asn Ala Ala Ala Asn 355
360 365 Val Leu Arg Glu Thr Trp Leu
Ile Tyr Lys His Thr Arg Leu Val Lys 370 375
380 Arg Val Asn Pro Gly Arg Val Arg Thr His Gln Arg
Lys Phe Leu Leu 385 390 395
400 Ala Ile Tyr Ala Leu Arg Lys Val Lys Met Asp Gln Arg Lys Leu Met
405 410 415 Asp Asn Ala
Asn Thr Ile Thr Asp Met Ala Lys Thr Gln Asn Thr Val 420
425 430 Tyr Glu Ile Ile Ser Asp Met Ser
Ser Arg Gln Asp Ala Ile Glu Glu 435 440
445 Arg Leu Thr Asn Leu Glu Asp Lys Met Gln Ser Ile Gln
Glu His Met 450 455 460
Glu Ser Leu Pro Asp Leu Leu Ser Arg Cys Leu Thr Gln His Gln Glu 465
470 475 480 Arg Ile Glu Gln
Arg Arg Asn Phe Leu His Pro Asp Thr Ala Ala Val 485
490 495 Ala Pro Ile Gln Ala Pro Thr Pro Gln
Ser Met Phe Asn Ala Ala Pro 500 505
510 Met Leu Phe Pro His Ser Arg Ser Val Pro Ser Ser Asn Asn
Ala Ala 515 520 525
Ala Thr Tyr His Trp Pro Thr Ser Pro Ile Leu Pro Pro Ile Ser Ser 530
535 540 Arg Thr Pro His Leu
Val Pro Asp Thr His Met Pro Ser Asn Gly Ser 545 550
555 560 Ala Val Asn Ser Tyr Ala Ser Ser Asn Lys
Tyr Gly Ser 565 570
2291878DNAMyzus persicae 229atgcttctgt gttatatcaa aagtacagag ctgcgaaagc
acacgtcatc gacattgtcg 60atcactagtg ggatgaaggt tagcggttca ggtggccgag
gcgatagcgg cgtagtgggc 120gaggaagccg gcatagcatt ggttagcata cattccgact
atccccgcta caccgaagaa 180cgtaccgggt tggtgtgcaa gggtaccagc ttagtaggtt
ccagtggtaa tataactggc 240agtaaacaca aaccaaacgt cggatacaga ctgggtaggc
gtaaaacact tttcgaaaaa 300cgaaaaagaa tcagtgatta cgctctagtg atgggaatgt
ttggaattat aatcatggtc 360atcgagaatg agttggccag tgcaggagta tactcgaaaa
cgtcattcta ttctacgtca 420ctgaaaacgc tcatatccgt atccaccatc attctgctgg
gtttgatcat ggcctaccac 480gcgctcgaag tacagttgtt catgatcgac aattgcgcgg
acgactggcg gatcgcgatg 540acgtggcagc ggattgccac catcacgatg gagctggtga
tctgcgcgat ccacccgatc 600cctggcgagt attacttcga gtggaaaacc aagctggcca
acaagcacgg gaagctggag 660actcggtggg tgccgtacga tgtgccactg tcgctaccga
tgttcttccg gctgtacctc 720atctgccggg tcatgttgct tcacagcaag ctgttcacgg
acgcatcgtc ccgcagcatc 780ggcgccctga accggatcaa cttcaacacg aggttcgtgc
tgaagacgct catgaccata 840tgcccgggca cggtgctact cgtgttcatg gtgtccctgt
ggataatcgc cagctggacg 900ctcagacagt gcgagaggtt ccacgacgag gaccacgcca
attacttgaa ctcgatgtgg 960ctgatagcca tcacgttact cagtgtaggc tacggagaca
ttgtaccaaa cacgtactgc 1020ggacgaggca tcacgctctc ctgcggtatt atgggtgccg
ggtgcacagc tcttctagtg 1080gctgttgtgt cacgaaagat ggaactgtct agggcagaga
aacatgtcca taatttcatg 1140atggacactc aacttacaaa acgactgaaa aacgctgcgg
ccaacgtcct tagagagacg 1200tggctgatct acaaacacac cagactggtg aaaagggtga
atgcaggcag ggttcgaaca 1260caccaacgaa aattcttgtt ggccatatac gcgttgagaa
aagtaaaaat ggaccaaaga 1320aaattaatgg acaacgcaaa tacaataaca gacatggcca
aaaacacagt ttatgaaatt 1380gtatccgaca tgagtaatcg atatgatgcg tttgaagaac
gtttggtgaa tctcgaagat 1440aaactggtag ccttacaaga acagctggag ctgttgccgg
agatcctgac ccggtgcata 1500gcgcagaacc agcagaacca gcagaacacc agcaacctgt
cgtcgacgac ggagtccagg 1560cgcaatttcc tgcacccgga atctgcggcc gcggtggcca
ccggcggtct gatgcaaccg 1620tccgtctcgt ctccggcggg cagcatgacc ggcgtcggcg
gaaacccgct gatgttcccg 1680tcgtcctcgg gcgccgcgag cggcggcatg atgttggcca
tgggtaacgg atcgacggtc 1740atgtcccact cgcgcagcgt gccaccgacc ggtgccggcg
gcgcgtccca ttaccactgg 1800cccaccagtc ccatattgcc gccaatcagc agccggacgc
cgcatttagt gcccgagccc 1860atccagccgt ccagctga
1878230625PRTMyzus persicae 230Met Leu Leu Cys Tyr
Ile Lys Ser Thr Glu Leu Arg Lys His Thr Ser 1 5
10 15 Ser Thr Leu Ser Ile Thr Ser Gly Met Lys
Val Ser Gly Ser Gly Gly 20 25
30 Arg Gly Asp Ser Gly Val Val Gly Glu Glu Ala Gly Ile Ala Leu
Val 35 40 45 Ser
Ile His Ser Asp Tyr Pro Arg Tyr Thr Glu Glu Arg Thr Gly Leu 50
55 60 Val Cys Lys Gly Thr Ser
Leu Val Gly Ser Ser Gly Asn Ile Thr Gly 65 70
75 80 Ser Lys His Lys Pro Asn Val Gly Tyr Arg Leu
Gly Arg Arg Lys Thr 85 90
95 Leu Phe Glu Lys Arg Lys Arg Ile Ser Asp Tyr Ala Leu Val Met Gly
100 105 110 Met Phe
Gly Ile Ile Ile Met Val Ile Glu Asn Glu Leu Ala Ser Ala 115
120 125 Gly Val Tyr Ser Lys Thr Ser
Phe Tyr Ser Thr Ser Leu Lys Thr Leu 130 135
140 Ile Ser Val Ser Thr Ile Ile Leu Leu Gly Leu Ile
Met Ala Tyr His 145 150 155
160 Ala Leu Glu Val Gln Leu Phe Met Ile Asp Asn Cys Ala Asp Asp Trp
165 170 175 Arg Ile Ala
Met Thr Trp Gln Arg Ile Ala Thr Ile Thr Met Glu Leu 180
185 190 Val Ile Cys Ala Ile His Pro Ile
Pro Gly Glu Tyr Tyr Phe Glu Trp 195 200
205 Lys Thr Lys Leu Ala Asn Lys His Gly Lys Leu Glu Thr
Arg Trp Val 210 215 220
Pro Tyr Asp Val Pro Leu Ser Leu Pro Met Phe Phe Arg Leu Tyr Leu 225
230 235 240 Ile Cys Arg Val
Met Leu Leu His Ser Lys Leu Phe Thr Asp Ala Ser 245
250 255 Ser Arg Ser Ile Gly Ala Leu Asn Arg
Ile Asn Phe Asn Thr Arg Phe 260 265
270 Val Leu Lys Thr Leu Met Thr Ile Cys Pro Gly Thr Val Leu
Leu Val 275 280 285
Phe Met Val Ser Leu Trp Ile Ile Ala Ser Trp Thr Leu Arg Gln Cys 290
295 300 Glu Arg Phe His Asp
Glu Asp His Ala Asn Tyr Leu Asn Ser Met Trp 305 310
315 320 Leu Ile Ala Ile Thr Leu Leu Ser Val Gly
Tyr Gly Asp Ile Val Pro 325 330
335 Asn Thr Tyr Cys Gly Arg Gly Ile Thr Leu Ser Cys Gly Ile Met
Gly 340 345 350 Ala
Gly Cys Thr Ala Leu Leu Val Ala Val Val Ser Arg Lys Met Glu 355
360 365 Leu Ser Arg Ala Glu Lys
His Val His Asn Phe Met Met Asp Thr Gln 370 375
380 Leu Thr Lys Arg Leu Lys Asn Ala Ala Ala Asn
Val Leu Arg Glu Thr 385 390 395
400 Trp Leu Ile Tyr Lys His Thr Arg Leu Val Lys Arg Val Asn Ala Gly
405 410 415 Arg Val
Arg Thr His Gln Arg Lys Phe Leu Leu Ala Ile Tyr Ala Leu 420
425 430 Arg Lys Val Lys Met Asp Gln
Arg Lys Leu Met Asp Asn Ala Asn Thr 435 440
445 Ile Thr Asp Met Ala Lys Asn Thr Val Tyr Glu Ile
Val Ser Asp Met 450 455 460
Ser Asn Arg Tyr Asp Ala Phe Glu Glu Arg Leu Val Asn Leu Glu Asp 465
470 475 480 Lys Leu Val
Ala Leu Gln Glu Gln Leu Glu Leu Leu Pro Glu Ile Leu 485
490 495 Thr Arg Cys Ile Ala Gln Asn Gln
Gln Asn Gln Gln Asn Thr Ser Asn 500 505
510 Leu Ser Ser Thr Thr Glu Ser Arg Arg Asn Phe Leu His
Pro Glu Ser 515 520 525
Ala Ala Ala Val Ala Thr Gly Gly Leu Met Gln Pro Ser Val Ser Ser 530
535 540 Pro Ala Gly Ser
Met Thr Gly Val Gly Gly Asn Pro Leu Met Phe Pro 545 550
555 560 Ser Ser Ser Gly Ala Ala Ser Gly Gly
Met Met Leu Ala Met Gly Asn 565 570
575 Gly Ser Thr Val Met Ser His Ser Arg Ser Val Pro Pro Thr
Gly Ala 580 585 590
Gly Gly Ala Ser His Tyr His Trp Pro Thr Ser Pro Ile Leu Pro Pro
595 600 605 Ile Ser Ser Arg
Thr Pro His Leu Val Pro Glu Pro Ile Gln Pro Ser 610
615 620 Ser 625 2312166DNATribolium
castaneum 231atgaatgccg aagtgaaagc tcaaaggact gcaaaaactc caattagtca
caggattctg 60acagctaacc gaagttccag taagaagatg agtagccaag acgagactgc
tggcctgctg 120gtagcgcaac cgtctctcac gagcacttct tctccggcaa actgctccaa
accggtgctg 180atgcgccaag aatgcacgac attcttggtg tcgtcgcacc atcctcagct
ttcagtgttt 240tctgacagcg aggaagacgg atctctttgc ttggaggaga acagcactcg
ctcggtgccg 300gacattgaac ttcactgcag gctggacgtg aaaggatgca agcagaactt
gtcgtcgaac 360atcccgacgc ggaacaggag ttcatcaaat gcatttcagc ttgcgccgta
cacgtcgtcg 420ccgcgggggt tattggagag gagaacgtcc cagactccgg cgtcgaccct
gaaaatcgtg 480cgctccgtgt caagagagag cgtgcggtcc attcaccatt gtacttgtcc
gtgcctcaat 540gcgccgctac gaaagcccgt ctcgactctc tccgtccccg gagcggtgaa
gaactcgagc 600agggactctg ccggcggaag gatgcagcag gaggagccgg gagtcgccct
cgtgggacac 660gtggactacc cccggtacat ggaggacagg actataggaa gcggcgtcta
caaagggcct 720tcgtctggaa gtctcaagca caaacccaac gtgggctatc ggttaggccg
gcgcaaggcg 780ctttttgaaa agaggagaag gattagtgat tacgctcttg ttatggggat
gtttgggatt 840attgttatgg ttatagaaaa tgaactctca agtgctggcg tttatcgcaa
agacgatttt 900tactcaattg cgctcaaaac tctgatatct gtttcgactg tgattctttt
aggcctcatt 960gtggcctatc atgctttaga agtgcagctt tttatgatag acaactgcgc
ggacgattgg 1020cggatcgcga tgacctggca gaggatctgc caaatcacca tggaactagt
catatgtgca 1080gtgcatccga ttcctggaca ctatcggttc gtgtggacga ctaaattatc
caatcacaag 1140gacgggggga tcggatcaaa gtgtgtaccg tacgacgtgc ccttatcttt
accgatgttc 1200cttcggcttt acttaatctg cagagtgatg ttactgcata gtaagttgtt
cacggacgca 1260tcgtcgcgca gcataggagc tcttaatcga attaatttta atacgcggtt
tgtcttaaaa 1320actctcatga ccatctgccc cgggacagtg ctcttagttt ttatggtttc
cttgtggatt 1380atcgccagtt ggacattgcg ccagtgcgaa aggttccacg atgaagaaca
cgcaaacctg 1440cttaatgcta tgtggctgat agcgatcact ttcctgagcg ttggcttcgg
agatattgtt 1500cctaacacgt actgtggaag gggcattgcg gtcagcacag gcatcatggg
ggctggttgc 1560acggccttac tcgtggctgt ggtgtcgagg aagctggaat tgactcgagc
ggaaaagcac 1620gtgcataatt ttatgatgga cacccaacta acaaaacggc taaaaaacgc
cgccgccaac 1680gttttacgag aaacttggtt aatttacaaa cacacaaggc tagtgaaaag
ggtgaaccct 1740ggcagagttc ggactcatca aagaaaattt ttactcgcaa tttacgcgtt
acgtaaagtt 1800aaaatggacc aacgcaaatt aatggacaat gccaacacca taacggatat
ggcgaagacg 1860caaaacaccg tgtatgagat agtttccgat atgagcacga ggcaagacac
cttggaagat 1920cgcttgacga cgatggaaga taagatcgta gcacttcagg agcagctaga
tttgctacct 1980gatctcattg ctactagaat ccaagctcag gcggagaaaa tggagcaaag
acgcaacttt 2040ttgcatcctg aatccgcggc tggtcttcaa caggcgcgta gcgtgccccc
tggatgccct 2100tggcccggtc ctgctttagc tcctgctgga aagcaatctg ctgcctcttc
aaacgcacag 2160agttga
2166232721PRTTribolium castaneum 232Met Asn Ala Glu Val Lys
Ala Gln Arg Thr Ala Lys Thr Pro Ile Ser 1 5
10 15 His Arg Ile Leu Thr Ala Asn Arg Ser Ser Ser
Lys Lys Met Ser Ser 20 25
30 Gln Asp Glu Thr Ala Gly Leu Leu Val Ala Gln Pro Ser Leu Thr
Ser 35 40 45 Thr
Ser Ser Pro Ala Asn Cys Ser Lys Pro Val Leu Met Arg Gln Glu 50
55 60 Cys Thr Thr Phe Leu Val
Ser Ser His His Pro Gln Leu Ser Val Phe 65 70
75 80 Ser Asp Ser Glu Glu Asp Gly Ser Leu Cys Leu
Glu Glu Asn Ser Thr 85 90
95 Arg Ser Val Pro Asp Ile Glu Leu His Cys Arg Leu Asp Val Lys Gly
100 105 110 Cys Lys
Gln Asn Leu Ser Ser Asn Ile Pro Thr Arg Asn Arg Ser Ser 115
120 125 Ser Asn Ala Phe Gln Leu Ala
Pro Tyr Thr Ser Ser Pro Arg Gly Leu 130 135
140 Leu Glu Arg Arg Thr Ser Gln Thr Pro Ala Ser Thr
Leu Lys Ile Val 145 150 155
160 Arg Ser Val Ser Arg Glu Ser Val Arg Ser Ile His His Cys Thr Cys
165 170 175 Pro Cys Leu
Asn Ala Pro Leu Arg Lys Pro Val Ser Thr Leu Ser Val 180
185 190 Pro Gly Ala Val Lys Asn Ser Ser
Arg Asp Ser Ala Gly Gly Arg Met 195 200
205 Gln Gln Glu Glu Pro Gly Val Ala Leu Val Gly His Val
Asp Tyr Pro 210 215 220
Arg Tyr Met Glu Asp Arg Thr Ile Gly Ser Gly Val Tyr Lys Gly Pro 225
230 235 240 Ser Ser Gly Ser
Leu Lys His Lys Pro Asn Val Gly Tyr Arg Leu Gly 245
250 255 Arg Arg Lys Ala Leu Phe Glu Lys Arg
Arg Arg Ile Ser Asp Tyr Ala 260 265
270 Leu Val Met Gly Met Phe Gly Ile Ile Val Met Val Ile Glu
Asn Glu 275 280 285
Leu Ser Ser Ala Gly Val Tyr Arg Lys Asp Asp Phe Tyr Ser Ile Ala 290
295 300 Leu Lys Thr Leu Ile
Ser Val Ser Thr Val Ile Leu Leu Gly Leu Ile 305 310
315 320 Val Ala Tyr His Ala Leu Glu Val Gln Leu
Phe Met Ile Asp Asn Cys 325 330
335 Ala Asp Asp Trp Arg Ile Ala Met Thr Trp Gln Arg Ile Cys Gln
Ile 340 345 350 Thr
Met Glu Leu Val Ile Cys Ala Val His Pro Ile Pro Gly His Tyr 355
360 365 Arg Phe Val Trp Thr Thr
Lys Leu Ser Asn His Lys Asp Gly Gly Ile 370 375
380 Gly Ser Lys Cys Val Pro Tyr Asp Val Pro Leu
Ser Leu Pro Met Phe 385 390 395
400 Leu Arg Leu Tyr Leu Ile Cys Arg Val Met Leu Leu His Ser Lys Leu
405 410 415 Phe Thr
Asp Ala Ser Ser Arg Ser Ile Gly Ala Leu Asn Arg Ile Asn 420
425 430 Phe Asn Thr Arg Phe Val Leu
Lys Thr Leu Met Thr Ile Cys Pro Gly 435 440
445 Thr Val Leu Leu Val Phe Met Val Ser Leu Trp Ile
Ile Ala Ser Trp 450 455 460
Thr Leu Arg Gln Cys Glu Arg Phe His Asp Glu Glu His Ala Asn Leu 465
470 475 480 Leu Asn Ala
Met Trp Leu Ile Ala Ile Thr Phe Leu Ser Val Gly Phe 485
490 495 Gly Asp Ile Val Pro Asn Thr Tyr
Cys Gly Arg Gly Ile Ala Val Ser 500 505
510 Thr Gly Ile Met Gly Ala Gly Cys Thr Ala Leu Leu Val
Ala Val Val 515 520 525
Ser Arg Lys Leu Glu Leu Thr Arg Ala Glu Lys His Val His Asn Phe 530
535 540 Met Met Asp Thr
Gln Leu Thr Lys Arg Leu Lys Asn Ala Ala Ala Asn 545 550
555 560 Val Leu Arg Glu Thr Trp Leu Ile Tyr
Lys His Thr Arg Leu Val Lys 565 570
575 Arg Val Asn Pro Gly Arg Val Arg Thr His Gln Arg Lys Phe
Leu Leu 580 585 590
Ala Ile Tyr Ala Leu Arg Lys Val Lys Met Asp Gln Arg Lys Leu Met
595 600 605 Asp Asn Ala Asn
Thr Ile Thr Asp Met Ala Lys Thr Gln Asn Thr Val 610
615 620 Tyr Glu Ile Val Ser Asp Met Ser
Thr Arg Gln Asp Thr Leu Glu Asp 625 630
635 640 Arg Leu Thr Thr Met Glu Asp Lys Ile Val Ala Leu
Gln Glu Gln Leu 645 650
655 Asp Leu Leu Pro Asp Leu Ile Ala Thr Arg Ile Gln Ala Gln Ala Glu
660 665 670 Lys Met Glu
Gln Arg Arg Asn Phe Leu His Pro Glu Ser Ala Ala Gly 675
680 685 Leu Gln Gln Ala Arg Ser Val Pro
Pro Gly Cys Pro Trp Pro Gly Pro 690 695
700 Ala Leu Ala Pro Ala Gly Lys Gln Ser Ala Ala Ser Ser
Asn Ala Gln 705 710 715
720 Ser 23320DNAArtificialforward primer DM 233atgaaaacac cttccattgc
2023420DNAArtificialreverse
primer DM 234tcagctgccg tatttgttgg
2023539DNAArtificialforward primer MP 235gccaccatgc ttctgtgtta
tatcaaaagt acagagctg
3923623DNAArtificialreverse primer MP 236tcagctggac ggctggatgg gct
2323740DNAArtificialforward primer
TC 237atgaatgccg aagtgaaagc tcaaaggact gcaaaaactc
4023840DNAArtificialreverse primer TC 238tcaactctgt gcgtttgaag
aggcagcaga ttgctttcca
40239448PRTArtificialconsensus 239Lys His Lys Pro Asn Val Gly Tyr Arg Leu
Gly Xaa Arg Lys Xaa Leu 1 5 10
15 Phe Glu Lys Arg Xaa Arg Ile Ser Asp Tyr Ala Leu Val Met Gly
Met 20 25 30 Phe
Gly Ile Ile Xaa Met Val Ile Glu Asn Glu Leu Xaa Ser Ala Gly 35
40 45 Val Tyr Xaa Lys Xaa Xaa
Phe Tyr Ser Xaa Xaa Leu Lys Thr Leu Ile 50 55
60 Ser Val Ser Thr Xaa Ile Leu Leu Gly Leu Ile
Xaa Ala Tyr His Ala 65 70 75
80 Leu Glu Val Gln Leu Phe Met Ile Asp Asn Cys Ala Asp Asp Trp Arg
85 90 95 Ile Ala
Met Thr Trp Gln Arg Ile Xaa Xaa Ile Xaa Xaa Glu Leu Xaa 100
105 110 Ile Cys Ala Xaa His Pro Ile
Pro Gly Xaa Tyr Xaa Phe Xaa Trp Xaa 115 120
125 Thr Lys Leu Xaa Asn Xaa Lys Xaa Xaa Xaa Xaa Xaa
Xaa Xaa Xaa Val 130 135 140
Pro Tyr Asp Val Xaa Leu Ser Leu Pro Met Phe Xaa Arg Leu Tyr Leu 145
150 155 160 Ile Cys Arg
Val Met Leu Leu His Ser Lys Leu Phe Thr Asp Ala Ser 165
170 175 Ser Arg Ser Ile Gly Ala Leu Asn
Arg Ile Asn Phe Asn Thr Arg Phe 180 185
190 Val Leu Lys Thr Leu Met Thr Ile Cys Pro Gly Thr Val
Leu Leu Val 195 200 205
Phe Met Val Ser Leu Trp Ile Ile Ala Ser Trp Thr Leu Arg Gln Cys 210
215 220 Glu Arg Phe His
Asp Glu Xaa His Ala Asn Xaa Leu Asn Xaa Met Trp 225 230
235 240 Leu Ile Ala Ile Thr Xaa Leu Ser Val
Gly Xaa Gly Asp Ile Val Pro 245 250
255 Asn Thr Tyr Cys Gly Arg Gly Ile Xaa Xaa Ser Xaa Gly Ile
Met Gly 260 265 270
Ala Gly Cys Thr Ala Leu Leu Val Ala Val Val Ser Arg Lys Xaa Glu
275 280 285 Leu Xaa Arg Ala
Glu Lys His Val His Asn Phe Met Met Asp Thr Gln 290
295 300 Leu Thr Lys Arg Leu Lys Asn Ala
Ala Ala Asn Val Leu Arg Glu Thr 305 310
315 320 Trp Leu Ile Tyr Lys His Thr Arg Leu Val Lys Arg
Val Asn Xaa Gly 325 330
335 Arg Val Arg Thr His Gln Arg Lys Phe Leu Leu Ala Ile Tyr Ala Leu
340 345 350 Arg Lys Val
Lys Met Asp Gln Arg Lys Leu Met Asp Asn Ala Asn Thr 355
360 365 Ile Thr Asp Met Ala Lys Xaa Xaa
Asn Thr Val Tyr Glu Ile Xaa Ser 370 375
380 Asp Met Ser Xaa Arg Xaa Asp Xaa Xaa Glu Xaa Arg Leu
Xaa Xaa Xaa 385 390 395
400 Glu Asp Lys Xaa Xaa Xaa Xaa Gln Glu Xaa Xaa Xaa Xaa Leu Pro Xaa
405 410 415 Xaa Xaa Xaa Xaa
Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 420
425 430 Xaa Xaa Xaa Xaa Xaa Xaa Xaa Glu Xaa
Arg Arg Asn Phe Leu His Pro 435 440
445 24011PRTArtificialmotif 240Lys His Lys Pro Asn Val Gly
Tyr Arg Leu Gly 1 5 10
24115PRTArtificialmotif 241Arg Ile Ser Asp Tyr Ala Leu Val Met Gly Met
Phe Gly Ile Ile 1 5 10
15 2429PRTArtificialmotif 242Leu Lys Thr Leu Ile Ser Val Ser Thr 1
5 2436PRTArtificialmotif 243Ile Leu Leu Gly Leu
Ile 1 5 24428PRTArtificialmotif 244Ala Tyr His Ala
Leu Glu Val Gln Leu Phe Met Ile Asp Asn Cys Ala 1 5
10 15 Asp Asp Trp Arg Ile Ala Met Thr Trp
Gln Arg Ile 20 25
2456PRTArtificialmotif 245Leu Ser Leu Pro Met Phe 1 5
24674PRTArtificialmotif 246Arg Leu Tyr Leu Ile Cys Arg Val Met Leu Leu
His Ser Lys Leu Phe 1 5 10
15 Thr Asp Ala Ser Ser Arg Ser Ile Gly Ala Leu Asn Arg Ile Asn Phe
20 25 30 Asn Thr
Arg Phe Val Leu Lys Thr Leu Met Thr Ile Cys Pro Gly Thr 35
40 45 Val Leu Leu Val Phe Met Val
Ser Leu Trp Ile Ile Ala Ser Trp Thr 50 55
60 Leu Arg Gln Cys Glu Arg Phe His Asp Glu 65
70 2477PRTArtificialmotif 247Met Trp Leu Ile
Ala Ile Thr 1 5 24813PRTArtificialmotif 248Gly
Asp Ile Val Pro Asn Thr Tyr Cys Gly Arg Gly Ile 1 5
10 24918PRTArtificialmotif 249Gly Ile Met Gly Ala
Gly Cys Thr Ala Leu Leu Val Ala Val Val Ser 1 5
10 15 Arg Lys 25044PRTArtificialmotif 250Arg
Ala Glu Lys His Val His Asn Phe Met Met Asp Thr Gln Leu Thr 1
5 10 15 Lys Arg Leu Lys Asn Ala
Ala Ala Asn Val Leu Arg Glu Thr Trp Leu 20
25 30 Ile Tyr Lys His Thr Arg Leu Val Lys Arg
Val Asn 35 40
25139PRTArtificialmotif 251Gly Arg Val Arg Thr His Gln Arg Lys Phe Leu
Leu Ala Ile Tyr Ala 1 5 10
15 Leu Arg Lys Val Lys Met Asp Gln Arg Lys Leu Met Asp Asn Ala Asn
20 25 30 Thr Ile
Thr Asp Met Ala Lys 35 2526PRTArtificialmotif
252Asn Thr Val Tyr Glu Ile 1 5 2537PRTArtificialmotif
253Arg Arg Asn Phe Leu His Pro 1 5
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