METHODS AND COMPOSITIONS FOR PROSTATE CANCER IMMUNOTHERAPY

Abstract

The present invention features methods and compositions (e.g., immune response stimulating peptides (e.g., ERG or SIM2 peptides), activated immune cells, antigen-presenting cells, and antibodies or antigen-binding fragments thereof) for generating an immune response for the treatment of cancer (e.g., prostate cancer).

Description

CROSS-REFERENCE TO RELATED APPLICATIONS

[0001] This application claims priority to, and is a divisional of, U.S. patent application Ser. No. 12/990,438, filed on Jan. 20, 2011, which is the U.S. National Stage filing under 35 U.S.C. §371 of international application PCT/US2009/042338, filed Apr. 30, 2009, which claims benefit of U.S. Provisional Application No. 61/126,065, filed May 1, 2008.

FIELD OF THE INVENTION

[0002] In general, the invention relates to methods and compositions for the treatment of cancer (e.g., prostate cancer).

BACKGROUND OF THE INVENTION

[0003] The failure of immunotherapy for the treatment of prostate cancer in clinical trials is partly due to the lack of a causative oncogene antigen target for such therapy. However, the identification of cancer-specific antigens, which are specifically expressed in targeted cancer cells, provides rational targets for cancer immunotherapy. For example, existing vaccines for prostate cancer utilize cell lines without discrete or identified antigens. In some instances, these vaccines include antigenic proteins that are not specific to targeted cancer cells, antigenic proteins that are not immunogenic, or antigenic proteins that are not expressed in sufficient amounts on the surface of the tumor cells, thus reducing the efficacy of these vaccines and potentially resulting in undesirable side effects. Therefore, there is a need in the art for effective, more specific immunotherapies for the treatment of cancer, such as prostate cancer.

SUMMARY OF THE INVENTION

[0004] The present invention features methods and compositions (e.g., immune response stimulating peptides (e.g., ERG or SIM2 peptides), activated immune cells, antigen-presenting cells, and antibodies or antigen-binding fragments thereof) for generating an immune response for the treatment of cancer (e.g., prostate cancer).

[0005] In a first aspect, the invention features an immune response stimulating peptide having at least 90% sequence identity (e.g., 95, 96, 97, 98, or 99% sequence identity) to a contiguous amino acid sequence set forth in SEQ ID NO:1 (ERG2), SEQ ID NO:5 (SIM2), SEQ ID NO:11 (AMACR), SEQ ID NO:12 (BICD1), SEQ ID NO:13 (C10orf137), SEQ ID NO:14 (CDCL6), SEQ ID NO:15 (ICA1), SEQ ID NO:16 (KIAA1661), SEQ ID NO:17 (MAP7), SEQ ID NO:18 (MYO6), SEQ ID NO:19 (OR51E2), SEQ ID NO:20 (PAICS), SEQ ID NO:21 (PCSK6), SEQ ID NO:22 (PVT1), SEQ ID NO:23 (RGS10), SEQ ID NO:24 (SGEF), SEQ ID NO:25 (SMARCA4///MRPL43), or SEQ ID NO:26 (SS18), wherein the peptide has at least 7 but fewer than 50 amino acid residues (e.g., between 7 and 30, 25, 20, 15, 14, 13, 12, 11, or 10 amino acid residues, preferably 8, 9, or 10 amino acid residues, most preferably 9 amino acid residues) and is capable of activating immune cells in a mammalian host when bound to an antigen-presenting molecule. In another embodiment, the immune response stimulating peptide has the amino acid sequence set forth in SEQ ID NOs: 2, 3, 4, 6, 7, 8, 9, or 10.

[0006] In a second aspect, the invention features an activated immune cell (e.g., a cytotoxic T lymphocyte) capable of specifically binding to an immune response stimulating peptide of the first aspect of the invention when the peptide is bound to an antigen-presenting molecule.

[0007] In a third aspect, the invention features an antigen-presenting cell having on its surface a peptide of the first aspect of the invention that is bound to an antigen-presenting molecule of an antigen-presenting cell.

[0008] In a fourth aspect, the invention features an antibody or antigen-binding fragment thereof that specifically binds to a peptide of the first aspect of the invention when the peptide is bound to an antigen-presenting molecule.

[0009] In a fifth aspect, the invention features a method of treating cancer (e.g., prostate cancer) in a subject (e.g., a mammal, such as a human) by administering a composition containing a peptide, activated immune cell, antigen-presenting cell, or antibody or antigen-binding fragment thereof of the first, second, third, and fourth aspects of the invention, respectively, in an amount sufficient to treat the cancer. The method may include administering an adjuvant, cytokine, or hormone therapy (e.g., androgen ablation). The composition administered to the subject (e.g., a human) may include a pharmaceutically acceptable diluent, excipient, or carrier and may be administered by any means known in the art (e.g., injection).

[0010] In a sixth aspect, the invention features a method of diagnosing a subject (e.g., a mammal, such as a human) as having cancer (e.g., prostate cancer) by measuring the level of ERG (e.g., SEQ ID NOs: 1, 2, 3, or 4) or SIM2 polypeptide (e.g., SEQ ID NOs: 5, 6, 7, 8, 9, or 10), or fragment thereof, in a sample from the subject and comparing it to a reference, wherein an alteration (e.g., an increase) in the level of ERG or SIM2 polypeptide compared to a reference is a diagnostic indicator of cancer (e.g., prostate cancer). The sample may be a bodily fluid (e.g., urine, blood, serum, plasma, and cerebrospinal fluid), cell, or tissue sample from a subject in which ERG or SIM2 polypeptide is normally detectable.

[0011] In other embodiments of all aspects of the invention, the immune cells of the invention include, for example, T cells (e.g., cytotoxic T lymphocytes); the antigen-presenting molecules are, e.g., histocompatibility molecules (e.g., HLA molecules (e.g., HLA class I molecules)) that may be present on the surface of a cell, e.g., a prostate cancer cell. Antigen-presenting cells contemplated by the invention include, e.g., dendritic cells, macrophages, B cells, monocytes, fibroblasts, thymic epithelial cells, thyroid epithelial cells, glial cells, pancreatic beta cells, and vascular endothelial cells. Any of the agents described by the invention (e.g., immune response stimulating peptides, activated immune cells, antigen-presenting cells, and antibodies or antigen-binding fragments thereof) may be conjugated to a heterologous compound, e.g., a therapeutic agent or cytotoxic agent. In yet other embodiments, the compositions of the invention may be administered as a vaccine and may include, for example, an additional therapeutic agent (e.g., a chemotherapeutic agent) or an adjuvant.

[0012] As used herein, "activation of immune cells" is meant an increase in immune cell (e.g., T cells (e.g., cytotoxic T lymphocytes), B cells, macrophages, and NK cells) function, for example, the release of cytokines, antibodies, and/or the induction of apoptosis following stimulation with one or more stimulatory molecules.

[0013] By "adjuvant" is meant any substance that is used to specifically or non-specifically potentiate an antigen-specific immune response through, e.g., activation of antigen-presenting cells. Exemplary adjuvants include an oil emulsion (e.g., complete or incomplete Freund's adjuvant), a chemokine, a cytokine, or an ADP-ribosylating exotoxin (bARE)). An adjuvant may be administered with an antigen or may be administered by itself. A single molecule may have both adjuvant and antigen properties.

[0014] As used herein, by "administering" is meant a method of giving a dosage of a composition of the invention to a subject in need thereof. The compositions described herein can be administered by any acceptable route known in the art and including, e.g., parenteral, dermal, transdermal, ocular, inhalation, buccal, sublingual, perilingual, nasal, rectal, topical, and oral administration. Parenteral administration includes intra-arterial, intravenous, intraperitoneal, subcutaneous, and intramuscular administration. The preferred method of administration can vary depending on various factors (e.g., the components of the composition being administered, the condition being treated and its severity, and the age, weight, and health of the patient).

[0015] By "an amount sufficient to treat" is meant the amount of a composition of the invention administered to improve, inhibit, or ameliorate a condition of a subject, or a symptom thereof, in a clinically relevant manner (e.g., improve, inhibit, prevent, or ameliorate prostate cancer or symptoms thereof). Any improvement in the subject is considered sufficient to achieve treatment. Preferably, an amount sufficient to treat is an amount that reduces, inhibits, or prevents the occurrence of one or more symptoms of, e.g., cancer (e.g., prostate cancer) or is an amount that reduces the severity of, or the length of time during which a subject suffers from, one or more symptoms of the cancer (e.g., by at least 10%, 20%, or 30%, more preferably by at least 50%, 60%, or 70%, and most preferably by at least 80%, 90%, 95%, 99%, or more, relative to a control subject that is not treated with a composition of the invention). A sufficient amount of a composition used to practice the methods described herein varies depending upon the manner of administration and the age, body weight, and general health of the subject being treated. A physician or researcher can decide the appropriate amount and dosage regimen.

[0016] The term "antibody," as used herein, includes whole antibodies or immunoglobulins and any antigen-binding fragment or single chains thereof. Antibodies, as used herein, can be mammalian (e.g., human or mouse), humanized, chimeric, recombinant, synthetically produced, or naturally isolated. Antibodies of the present invention include all known forms of antibodies and other protein scaffolds with antibody-like properties. For example, the antibody can be a human antibody, a humanized antibody, a bispecific antibody, a chimeric antibody, or a protein scaffold with antibody-like properties, such as fibronectin or ankyrin repeats. The antibody also can be a Fab, Fab'2, scFv, SMIP, diabody, nanobody, aptamers, or a domain antibody. The antibody can have any of the following isotypes: IgG (e.g., IgG1, IgG2, IgG3, and IgG4), IgM, IgA (e.g., IgA1, IgA2, and IgAsec), IgD, or IgE.

[0017] The term "antigen-binding fragment," as used herein, refers to one or more fragments of an antibody that retain the ability to specifically bind to a cancer-specific antigen (e.g., a prostate cancer-specific antigen (e.g., ERG or SIM2)). The antigen-binding function of an antibody can be performed by fragments of a full-length antibody. Examples of binding fragments encompassed within the term "antigen-binding fragment" of an antibody include, but are not limited to: (i) a Fab fragment, a monovalent fragment consisting of the V_L, V_H, C_L, and C_H1 domains; (ii) a F(ab')₂ fragment, a bivalent fragment comprising two Fab fragments linked by a disulfide bridge at the hinge region; (iii) a Fd fragment consisting of the V_H and C_H1 domains; (iv) a Fv fragment consisting of the V_L and V_H domains of a single arm of an antibody, (v) a dAb including V_H and V_L domains; (vi) a dAb fragment (Ward et al., Nature 341:544-546 (1989)), which consists of a V_H domain; (vii) a dAb which consists of a V_H or a V_L domain; (viii) an isolated complementarity determining region (CDR); and (ix) a combination of two or more isolated CDRs which may optionally be joined by a synthetic linker. Furthermore, although the two domains of the Fv fragment, V_L and V_H, are coded for by separate genes, they can be joined, using recombinant methods, by a synthetic linker that enables them to be made as a single protein chain in which the V_L and V_H regions pair to form monovalent molecules (known as single chain Fv (scFv); see, e.g., Bird et al., Science 242: 423-426 (1988) and Huston et al., Proc. Natl. Acad. Sci. USA 85: 5879-5883 (1988)). These antibody fragments are obtained using conventional techniques known to those of skill in the art, and the fragments are screened for utility in the same manner as intact antibodies. Antigen-binding fragments can be produced by recombinant DNA techniques or by enzymatic or chemical cleavage of intact immunoglobulins.

[0018] By "antigen-presenting cell" is meant a cell that displays an antigen (e.g., a cancer-specific antigen, such as a prostate cancer-specific antigen) complexed with a major histocompatibility complex (MHC) molecule on its surface. In some embodiments, antigen-presenting cells are capable of activating an immune cell (e.g., a T cell) that has not been exposed to an antigen (e.g., a naive T cell). These antigen-presenting cells internalize the antigen (e.g., either by phagocytosis or by receptor-mediated endocytosis) and display a fragment of the antigen bound to an MHC molecule on the cell surface. The immune cell (e.g., T cell) recognizes and interacts with the MHC molecule complex on the surface of the antigen-presenting cell. An additional co-stimulatory signal is then produced by the antigen-presenting cell, leading to activation of the T cell. Antigen-presenting cells include, e.g., dendritic cells, macrophages, B cells, monocytes, fibroblasts, thymic epithelial cells, thyroid epithelial cells, glial cells, pancreatic beta cells, and vascular endothelial cells. Antigen-presenting cells may be isolated from any of a variety of biological fluids, tissues, and organs (e.g., peripheral blood, bone marrow, tumor-infiltrating cells, peritumoral tissues, infiltrating cells, lymph nodes, spleen, skin, and umbilical cord blood).

[0019] As used herein, an "antigen-presenting molecule" refers to a class I or class II major histocompatibility (MHC) molecule (e.g., a human leukocyte antigen (HLA) molecule) or any other molecule capable of binding to an antigen and presenting the antigen on the surface of a cell such that it can be recognized by an immune cell (e.g., a naive T cell) as a complex of antigen and antigen-presenting molecule, thereby leading to, e.g., activation of the immune cell.

[0020] The term "cytotoxic agent," as used herein, refers to a substance that inhibits or prevents one or more functions of cells (e.g., cellular replication, division, or secretion of proteins) or causes apoptosis or necrosis of cells. The term is intended to include radioactive isotopes (e.g., I¹³¹, I¹²⁵, Y⁹⁰, and Re¹⁸6), chemotherapeutic agents, and toxins, such as enzymatically active toxins of bacterial, fungal, plant or animal origin, or fragments thereof. Additional cytotoxic agents include, but are not limited to, alkylating agents, antibiotics, antimetabolites, tubulin inhibitors, topoisomerase I and II inhibitors, hormonal agonists or antagonists, or immunomodulators. Cytotoxic agents may be cytotoxic when activated by light or infrared radiation (Photofrin, IR dyes; Nat. Biotechnol. 19(4):327-331, 2001), may operate through other mechanistic pathways, or be supplementary potentiating agents.

[0021] The term "immune cells," as used herein, refers to any cell that is involved in the generation, regulation, or effect of the acquired or innate immune system. Immune cells include, e.g., T cells (e.g., CD4.sup.+ cells or CD8.sup.+ cells), B cells, natural killer (NK) cells, macrophages, monocytes and dendritic cells, and neutrophils.

[0022] By "immune response stimulating peptide" is meant a peptide that is a tumor-specific antigen, such as a prostate cancer-specific antigen (e.g., a peptide of ERG or SIM2) that is presented by an antigen-presenting cell histocompatibility molecule (e.g., a major histocompatibility complex molecule (MHC), such as an HLA class I molecule) expressed in, e.g., dendritic cells, macrophages, monocytes, and B cells; the binding of a naive immune cell (e.g., a T cell) to the peptide/histocompatibility molecule complex activates an immune cell against the tumor-specific antigen. Such immune response stimulating peptides generally comprise at least 7 amino acid residues, but may comprise up to 50 amino acid residues. Immune response stimulating peptides can generally be identified using well-known techniques including, e.g., screening peptides for the ability to react with antigen-specific antibodies, antisera, or T cell lines or clones. T cell responses to the immune response stimulating peptide may include, e.g., the release of cytokines, increased T cell proliferation, or changes in intracellular calcium concentrations, as known in the art.

[0023] By "pharmaceutically acceptable carrier" is meant a diluent, excipient, or adjuvant which is physiologically acceptable to the subject while retaining the therapeutic properties of the composition with which it is administered. One exemplary pharmaceutically acceptable carrier is physiological saline. Other physiologically acceptable diluents, excipients, carriers, or adjuvants and their formulations are known to one skilled in the art.

[0024] By "proliferative disease" or "cancer" is meant any condition characterized by abnormal or unregulated cell growth. An example of a proliferative disease is, e.g., prostate cancer. Other exemplary cancers include solid tumors such as: sarcomas (e.g., clear cell sarcoma), carcinomas (e.g., renal cell carcinoma), and lymphomas; tumors of the breast, colon, rectum, lung, oropharynx, hypopharynx, esophagus, stomach, pancreas, liver, bilecyst, bile duct, small intestine, urinary system (including the kidney, bladder, and epithelium of the urinary tract), female genital system (including the uterine neck, uterus, ovary, chorioma, and gestational trophoblast), male genital system (including the seminal vesicle and testicles), endocrine glands (including the thyroid gland, adrenal gland, and pituitary body), skin (including angioma, melanoma, sarcoma originating from bone or soft tissue, and Kaposi's sarcoma), brain and meninges (including astrocytoma, neuroastrocytoma, spongioblastoma, retinoblastoma, neuroma, neuroblastoma, neurinoma and neuroblastoma), nerves, eyes, hemopoietic system (including chloroleukemia, plasmacytoma and dermal T lymphoma/leukemia), and immune system (including lymphoma, e.g., Hodgkin's lymphoma and non-Hodgkin's lymphoma). An example of a non-solid tumor proliferative disease is leukemia (e.g., acute lymphoblastic leukemia).

[0025] By "protein," "polypeptide," or "peptide" is meant any chain of more than two amino acids, regardless of post-translational modification (e.g., glycosylation or phosphorylation), constituting all or part of a naturally occurring polypeptide or peptide, or constituting a non-naturally occurring polypeptide or peptide. A polypeptide or peptide may be said to be "isolated" or "substantially pure" when physical, mechanical, or chemical methods have been employed to remove the polypeptide from cellular constituents. An "isolated polypeptide or peptide," "substantially pure polypeptide or peptide," or "substantially pure and isolated polypeptide or peptide" is typically considered removed from cellular constituents and substantially pure when it is at least 60% by weight free from the proteins and naturally occurring organic molecules with which it is naturally associated. Preferably, the polypeptide or peptide is at least 75%, more preferably at least 90%, and most preferably at least 99% by weight pure. A substantially pure polypeptide or peptide may be obtained by standard techniques, for example, by extraction from a natural source (e.g., cell lines), by expression of a recombinant nucleic acid encoding the polypeptide, or by chemically synthesizing the polypeptide or peptide. Purity can be measured by any appropriate method, e.g., by column chromatography, polyacrylamide gel electrophoresis, or HPLC analysis. Alternatively, a polypeptide or peptide is considered isolated if it has been altered by human intervention, placed in a location that is not its natural site, or if it is introduced into one or more cells.

[0026] By "specifically bind" is meant the preferential association of a binding moiety (e.g., an antibody, histocompatibility molecule, antigen-binding fragment, receptor, ligand, small molecule, or a cell (e.g., an immune cell)) to a target molecule (e.g., an antigen (or fragment thereof), cytokine, chemokine, hormone, receptor, antigen/MHC complex, or ligand) or to a cell or tissue bearing the target molecule (e.g., a cell surface antigen, a receptor, and a ligand) and not to non-target cells or tissues lacking the target molecule. In the context of an antigen/MHC complex, the term "specifically bind" applies, e.g., to the preferential association between the antigen/MHC complex and a receptor (e.g., a T cell receptor) on a naive immune cell, such as a T cell. It is recognized that a certain degree of non-specific interaction may occur between a binding moiety and a non-target molecule (present alone or in combination with a cell or tissue). Nevertheless, specific binding may be distinguished as mediated through specific recognition of the target molecule or complex. Specific binding results in a much stronger association between the binding moiety (e.g., an antibody or antigen-binding fragment) and, e.g., cells bearing the target molecule (e.g., an antigen or antigen/MHC complex) than between the binding moiety (e.g., an antibody or immune cell) and, e.g., cells lacking the target molecule. Specific binding typically results in greater than 2-fold, preferably greater than 5-fold, more preferably greater than 10-fold and most preferably greater than 100-fold increase in the amount of bound binding moiety (per unit time) to, e.g., a cell or tissue bearing the target molecule as compared to a cell or tissue lacking that target molecule. Binding moieties bind to the target molecule with a dissociation constant of, e.g., less than 10^-6 M, more preferably less than 10^-7M, 10^-8 M, 10^-9 M, 10^-10 M, 10^-11 M, or 10^-12 M, and most preferably less than 10^-13 M, 10^-14M, or 10^-15 M. Specific binding to a target molecule, e.g., a protein or peptide (e.g., an antigen) under such conditions requires a binding moiety that is selected for its specificity for that particular target molecule. A variety of assay formats are appropriate for selecting binding moieties (e.g., antibodies or immune cells) capable of specifically binding to a particular target molecule (e.g., an antigen or antigen/MHC complex), and vice versa. For example, solid-phase ELISA immunoassays are routinely used to select monoclonal antibodies specifically immunoreactive with a protein. See Harlow & Lane, Antibodies, A Laboratory Manual, Cold Spring Harbor Publications, New York, 1988, for a description of immunoassay formats and conditions that can be used to determine specific immunoreactivity.

[0027] By "subject" is meant any animal, e.g., a mammal (e.g., a human). A subject to be treated according to the methods described herein (e.g., a subject diagnosed with cancer (e.g., prostate cancer)) may be one who has been diagnosed by a medical practitioner as having such a condition or one at risk for developing the condition (e.g., cancer (e.g., prostate cancer)). Diagnosis may be performed by any suitable means. One skilled in the art will understand that a subject to be treated according to the present invention may have been subjected to standard tests or may have been identified, without examination, as one at high risk due to the presence of one or more risk factors (e.g., elevated prostate specific antigen (PSA) or a history of cancer).

[0028] The term "substantial identity" or "substantially identical," when used in the context of comparing a polynucleotide or polypeptide sequence to a reference sequence, means that the polynucleotide or polypeptide sequence is the same as the reference sequence or has a specified percentage of nucleotides or amino acid residues that are the same at the corresponding locations within the reference sequence when the two sequences are optimally aligned. For instance, an amino acid sequence that is "substantially identical" to a reference sequence has at least about 60% identity, preferably 65%, 70%, 75%, 80%, 85%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or higher percentage identity (up to 100%) to the reference sequence (e.g., the full-length amino acid sequence of ERG or SIM2 as set forth in SEQ ID NOs:11 or 12, respectively, or a fragment thereof), when compared and aligned for maximum correspondence over the full length of the reference sequence as measured using BLAST or BLAST 2.0 sequence comparison algorithms with default parameters, or by manual alignment and visual inspection (see, e.g., NCBI website).

[0029] The term "vaccine," as used herein, is defined as a composition used to provoke an immune response and confer immunity, at least briefly, after administration of the composition to a subject.

[0030] Other features and advantages of the invention will be apparent from the detailed description and from the claims.

BRIEF DESCRIPTION OF THE DRAWINGS

[0031] FIG. 1 is a Venn diagram highlighting the genes overexpressed in prostate cancer in our data set and in the Stanford data set and those underexpressed in extraprostatic human adult male tissues as deduced from the Novartis Gene Expression Atlas.

[0032] FIG. 2 is a series of graphs showing qRT-PCR validation of mRNA expression levels of individual genes (AMACR, BICD1, C10orf137, CDC2L6, ICA1, KIAA1661, MAP7, MYO6, OR51E2, PAICS, PCSK6, PVT1, RGS10, SGEF, and SIM2). qRT-PCR validation was performed using the TaqMan® gene expression assay. Only the 15 genes that were significantly overexpressed (P<0.05) in seven prostate cancer specimens compared to eight normal prostate specimens are shown here.

[0033] FIGS. 3A-3B are graphs showing that ERG epitopes bind human HLA-A2.1 and induce cytotoxic T lymphocytes (CTLs). Binding of predicted peptides to HLA-A2.1 was assessed using the assembly assay on T2 cells (FIG. 3A). Out of the 12 peptides tested, eight showed high-binding ability, as compared to a non-binding peptide (Ctrl). The rate of dissociation of peptides from HLA-A2.1 was determined by monitoring the decrease in HLA-A2.1 expression over time after incubation with binder peptides. Immunization of HHD mice with the eight peptides revealed three immunogenic ERG peptides, two of which are shown in FIG. 3B.

[0034] FIGS. 4A-4B show the methods and results of microarray experiments using nucleic acid programmable protein arrays (NAPPA). FIG. 4A is a schematic representation of NAPPA. FIG. 4B shows microarray data of autoantibodies to ACPP, AMACR, BRD2, ERG, and ETV1 by screening one prostate cancer serum against 800 tumor-associated antigens (TAAs).

[0035] FIG. 5 is a bar graph showing that SIM2 elicits spontaneous humoral responses in prostate cancer patients. Sera from nine prostate cancer patients and five healthy donors were subjected to an in vitro, cell-free protein expression-based ELISA to detect autoantibodies to SIM2. SIM2 was expressed as a GST-tagged protein, and an anti-GST-coated plate was used in the assay. Serum antibodies that bound to immobilized SIM2 were detected using a labeled anti-human antibody. In each assay, wells containing a GST-expressing vector were used as a negative control. Signals obtained from GST wells were subtracted from those obtained from wells that contained GST-SIM2. Three experiments were performed with triplicate wells for each serum sample per experiment. Statistics were performed on the triplicates' mean and SD, and antibody amounts were plotted as the difference of OD signals produced by GST-SIM2 and GST alone.

[0036] FIGS. 6A-6B are graphs showing that SIM2 harbors HLA-A2.1-restricted immunogenic epitopes. The binding to and rate of dissociation of peptides from HLA-A2.1 was determined by monitoring the decrease in HLA-A2.1 expression over time after incubation with binder peptides (FIG. 6A). Immunization of A2.1 transgenic HHD mice with the nine binding peptides revealed five immunogenic SIM2 peptides, as demonstrated by an IFN-γ ELISPOT assay (FIG. 6B).

[0037] FIGS. 7A-7B are bar graphs showing that androgen suppression attenuates prostate-specific tolerance. Hybrid A2.1/PSA (males, castrated males, or females) transgenic and A2.1 mice were immunized with vac-prostate specific antigen (PSA), and splenocytes were restimulated with PSA protein-loaded dendritic cells and tested by ELISPOT (FIG. 7A) or PSA-tetramers (FIG. 7B).

[0038] FIGS. 8A-8B are bar graphs showing qRT-PCR quantitation of ERG and SIM2 in Vcap (FIG. 8A) and LNCap cell lines (FIG. 8B), respectively, with increasing doses of androgen.

[0039] FIGS. 9A-9D are bar graphs showing the increased generation of regulatory T lymphocytes (Tregs) in mice with prostate cancer and the effect of anti-Tim-1 agonist antibody. FIGS. 9A and 9B describe sorted naive CD4 and CD8 T cells from splenocytes of TRAMP and control mice cultured with anti-CD3 and anti-CD28 Abs in the presence of TGF-β. The percentage of newly differentiated Tregs was determined by flow cytometry after three days of culture. FIGS. 9C and 9D show that treatment with an agonist anti-Tim-1 antibody at the time of immunization enhances the CTL response to Tag antigen in B6 mice, as evidenced by an increased number of Tag-specific CTLs.

[0040] FIG. 10 is a bar graph showing that anti-Tim-1Ab treatment elicits enhanced CTL responses to Tag in TRAMP mice (P<0.01 versus an isotype control).

[0041] FIG. 11 is the AMACR amino acid sequence (SEQ ID NO:11).

[0042] FIG. 12 is the BICD1 amino acid sequence (SEQ ID NO:12).

[0043] FIG. 13 is the C10orf137 amino acid sequence (SEQ ID NO:13).

[0044] FIG. 14 is the CDC2L6 amino acid sequence (SEQ ID NO:14).

[0045] FIG. 15 is the ICA1 amino acid sequence (SEQ ID NO:15).

[0046] FIG. 16 is the KIAA1661 amino acid sequence (SEQ ID NO:16).

[0047] FIG. 17 is the MAP7 amino acid sequence (SEQ ID NO:17).

[0048] FIG. 18 is the MYO6 amino acid sequence (SEQ ID NO:18).

[0049] FIG. 19 is the OR51E2 amino acid sequence (SEQ ID NO:19).

[0050] FIG. 20 is the PAICS amino acid sequence (SEQ ID NO:20).

[0051] FIG. 21 is the PCSK6 amino acid sequence (SEQ ID NO:21).

[0052] FIG. 22 is the PVT1 nucleic acid sequence (SEQ ID NO:22).

[0053] FIG. 23 is the RGS 10 amino acid sequence (SEQ ID NO:23).

[0054] FIG. 24 is the SGEF amino acid sequence (SEQ ID NO:24).

[0055] FIG. 25 is the SMARCA4///MRPL43 nucleic acid sequence (SEQ ID NO:25).

[0056] FIG. 26 is the SS18 amino acid sequence (SEQ ID NO:26).

[0057] FIG. 27 is the ERG amino acid sequence (SEQ ID NO:1).

[0058] FIG. 28 is the SIM2 amino acid sequence (SEQ ID NO:5).

DETAILED DESCRIPTION

[0059] It was recently discovered that the ERG transcription factor is overexpressed in prostate cancer cells and not expressed in non-cancerous prostate cells. We hypothesized that, because normal tissues do not express ERG, immune tolerance to ERG could be overcome and that immune responses could be generated against ERG. We identified ERG-derived, immune response stimulating peptides that can be presented to human immune cells (e.g., naive T cells) via, e.g., the human HLA-A2.1 antigen-presenting molecule that is found on the surface of all cells in the majority of humans. In addition, we identified immune response stimulating peptides from the protein SIM2, another protein overexpressed in prostate cancer cells and not expressed in non-cancerous prostate cells that may serve as an immunotherapy against prostate cancer. Our studies have also identified 16 additional proteins overexpressed in prostate cancer cells, peptides of which can also be used in immunotherapy.

[0060] Accordingly, the present invention features methods and compositions (e.g., immune response stimulating peptides (e.g., ERG or SIM2 peptides), activated immune cells, antigen-presenting cells, and antibodies or antigen-binding fragments thereof) for generating an immune response for the treatment of cancer (e.g., prostate cancer).

ERG, SIM2, and Other Prostate Tumor-Associated Antigens

[0061] An immune response stimulating peptide that is a tumor-specific antigen, such as a prostate cancer-specific antigen (e.g., a peptide of ERG or SIM2) that is presented by an antigen-presenting cell histocompatibility molecule (e.g., a major histocompatibility complex molecule (MHC), such as HLA class I) expressed in, e.g., dendritic cells, macrophages, monocytes, and B cells; the binding of a naive immune cell (e.g., a T cell) to the peptide/histocompatibility molecule complex activates an immune cell against the tumor-specific antigen. Such immune response stimulating peptides generally contain at least 7 amino acid residues but fewer than 50 amino acid residues. For example, the immune response stimulating peptide may include, e.g., 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 25, 30, 35, 40, 45, or 49 amino acid residues. Non-limiting examples of immune response stimulating peptides for use in the treatment of prostate cancer are described in Table 1.

TABLE-US-00001 TABLE 1 Peptide Name Peptide Sequence ERG(157) (SEQ ID NO: 2) GLPDVNILL ERG(295) (SEQ ID NO: 3) QLWQFLLEL ERG(412) (SEQ ID NO: 4) FVAPHPPAL SIM2(87) (SEQ ID NO: 6) TLDGFVFVV SIM2(205) (SEQ ID NO: 7) YQIVGLVAV SIM2(237) (SEQ ID NO: 8) SLDLKLIFL SIM2(241) (SEQ ID NO: 9) KLIFLDSRV SIM2(244) (SEQ ID NO: 10) FLDSRVTEV SEQ ID NO: 27 YGLPDVNILL SEQ ID NO: 28 GLPDVNILLF SEQ ID NO: 29 YGLPDVNILLF SEQ ID NO: 30 EYGLPDVNILL SEQ ID NO: 31 GLPDVNILLFQ SEQ ID NO: 32 EYGLPDVNILLFQ SEQ ID NO: 33 IQLWQFLLEL SEQ ID NO: 34 QLWQFLLELLS SEQ ID NO: 35 IQLWQFLLELLS SEQ ID NO: 36 QIQLWQFLLEL SEQ ID NO: 37 QLWQFLLELLSD SEQ ID NO: 38 QIQLWQFLLELLSD SEQ ID NO: 39 NFVAPHPPAL SEQ ID NO: 40 FVAPHPPALP SEQ ID NO: 41 NFVAPHPPALP SEQ ID NO: 42 MNFVAPHPPAL SEQ ID NO: 43 FVAPHPPALPV SEQ ID NO: 44 MNFVAPHPPALPV SEQ ID NO: 45 QTLDGFVFVV SEQ ID NO: 46 TLDGFVFVVA SEQ ID NO: 47 QTLDGFVFVVA SEQ ID NO: 48 LQTLDGFVFVV SEQ ID NO: 49 TLDGFVFVVAS SEQ ID NO: 50 LQTLDGFVFVVAS SEQ ID NO: 51 CYQIVGLVAV SEQ ID NO: 52 YQIVGLVAVG SEQ ID NO: 53 CYQIVGLVAVG SEQ ID NO: 54 SCYQIVGLVAV SEQ ID NO: 55 YQIVGLVAVGQ SEQ ID NO: 56 SCYQIVGLVAVGQ SEQ ID NO: 57 ASLDLKLIFL SEQ ID NO: 58 SLDLKLIFLD SEQ ID NO: 59 ASLDLKLIFLD SEQ ID NO: 60 RASLDLKLIFL SEQ ID NO: 61 SLDLKLIFLDS SEQ ID NO: 62 RASLDLKLIFLDS SEQ ID NO: 63 LKLIFLDSRV SEQ ID NO: 64 KLIFLDSRVT SEQ ID NO: 65 LKLIFLDSRVT SEQ ID NO: 66 DLKLIFLDSRV SEQ ID NO: 67 KLIFLDSRVTE SEQ ID NO: 68 DLKLIFLDSRVTE SEQ ID NO: 69 IFLDSRVTEV SEQ ID NO: 70 FLDSRVTEVT SEQ ID NO: 71 IFLDSRVTEVT SEQ ID NO: 72 LIFLDSRVTEV SEQ ID NO: 73 FLDSRVTEVTG SEQ ID NO: 74 LIFLDSRVTEVTG SEQ ID NO: 75 ALPDVNILL SEQ ID NO: 76 QLWQFVLEL SEQ ID NO: 77 FVAPHPPGL SEQ ID NO: 78 TLDGFLFVV SEQ ID NO: 79 YQIVALVAV SEQ ID NO: 80 SLDVKLIFL SEQ ID NO: 81 KLIYLDSRV SEQ ID NO: 82 FLDTRVTEV

[0062] Immune response stimulating peptides may be identified using well-known techniques, such as those described in Paul, W. E. (ed.), Fundamental Immunology, 3rd ed., pages 243-247 (Raven Press, 1993), hereby incorporated by reference. Such techniques include, e.g., screening polypeptides for the ability to react with antigen-specific antibodies, antisera, MHC molecules (e.g., HLA class I molecules), and/or T cell lines or clones. T cell responses to the immune response stimulating peptide may include, e.g., the release of cytokines, increased T cell proliferation, or changes in intracellular calcium concentrations, as known in the art. Activated T cells can now target cells expressing the peptide and can cause apoptosis or necrosis due to, e.g., changes in cytokine expression.

[0063] Immune response stimulating peptides, as described herein, can be produced by chemical synthesis using, for example, Merrifield solid phase synthesis, solution phase synthesis, or a combination of both (see, for example, the methods described in Solid Phase Peptide Synthesis, 2nd ed., 1984, The Pierce Chemical Co., Rockford, Ill., hereby incorporated by reference). Immune response stimulating peptides may then be condensed by standard peptide assembly chemistry. The peptides of the present invention may also be obtained by biological or genetic engineering processes (e.g., recombinant production in bacteria, mammalian cells, such as CHO cells, or in transgenic animals). For example, an expression vector, known to one of skill in the art, may be used that includes a polynucleotide sequence encoding the peptide of interest; the expression vector can be incorporated into a cell and the peptide encoded thereby can be expressed in the cell.

[0064] Peptides having the desired activity may be modified as necessary to provide certain desired attributes, e.g., improved pharmacological characteristics, while increasing or at least retaining substantially all of the biological activity of the unmodified peptide to bind the desired antigen-presenting molecule and activate the appropriate immune cell. For example, the immune response stimulating peptides may be subject to various changes, such as, e.g., substitutions (either conservative or non-conservative), deletions, or insertions, wherein such changes might provide for certain advantages in their use (e.g., improved binding to antigen-presenting molecules). Conservative substitutions may include, e.g., replacing an amino acid residue with another residue that is biologically and/or chemically similar (e.g., one hydrophobic residue for another or one polar residue for another). The substitutions include combinations such as Gly, Ala; Val, Ile, Leu, Met; Asp, Glu; Asn, Gln; Ser, Thr; Lys, Arg; and Phe, Tyr. The effect of single amino acid substitutions may also be probed using D-amino acids. Such modifications may be made using well-known peptide synthesis procedures, as described in, e.g., Merrifield, Science 232: 341-347 (1986), Barany and Merrifield, The Peptides, Gross and Meienhofer, eds., 1979, pages 1-284, Academic Press, New York.

[0065] The immune response stimulating peptides may also be modified by lengthening or shortening the amino acid sequence of the peptide, e.g., by the addition or deletion of amino acids. The peptides may also be modified by altering the order or composition of certain residues, though certain amino acid residues essential for biological activity, e.g., those at critical contact sites or conserved residues, may generally not be altered without an adverse effect on biological activity. The non-critical amino acids need not be limited to those naturally occurring in proteins, such as L-α-amino acids (or their D-isomers), but may include non-natural amino acids as well, such as β-γ-δ-amino acids, as well as many derivatives of L-α-amino acids.

[0066] Modifications of the immune response stimulating peptides with various amino acid residue mimetics or unnatural amino acids are particularly useful in increasing the stability of the peptide in vivo.

[0067] The immune response stimulating peptides of the present invention may be modified to provide desired attributes other than improved half-life in vivo. For example, the ability of the peptides to induce immune cell (e.g., cytotoxic T lymphocyte) activity may be enhanced by linkage to a sequence that contains at least one epitope that is capable of inducing, e.g., a T helper cell response. Exemplary epitopes include the non-structural protein from influenzae virus, NS1 (hemaglutinin) and the tetanus toxoid. Alternatively, the epitope can be selected so as to increase the solubility of the peptide or to enable the peptide to be targeted to desired intracellular compartments. The peptide may also be conjugated to any known cytotoxic or therapeutic moiety known to treat, inhibit, reduce, or ameliorate disease (e.g., prostate cancer)

[0068] In one embodiment, the immune response stimulating peptides of the invention activate immune cells in a subject when bound to an antigen-presenting molecule. An antigen-presenting molecule is a class I or class II major histocompatibility (MHC) molecule (e.g., a human leukocyte antigen (HLA) molecule) or any other molecule capable of binding to an antigen that presents the antigen on the surface of a cell and is recognized by cell(s) of the immune system as a complex of antigen and antigen-presenting molecule. Exemplary HLA molecules include, without limitation, HLA-A1 (A*0101); HLA-A2 (A*0206); HLA-A2 (A*0201); HLA-A2 (A*0207); HLA-A2 (A*02011); HLA-A3 (A*0301); HLA-A11 (A*11011); HLA-A24 (A*24021); HLA-A24 (A*2420); HLA-A26 (A*2601); HLA-A26 (A*2603); HLA-A31 (A*31012); HLA-A33 (A*3303); HLA-B7 (B*07021); HLA-B8 (B*0801); HLA-B15 (B*15011); HLA-B35 (B*35011); HLA-B38 (B*3801); HLA-B39 (B*39011); HLA-B40 (B*40012); HLA-B40 (B*4002); HLA-B44 (B*4401); HLA-B44 (B*44031); HLA-B46 (B*4601); HLA-B48 (B*4801); HLA-B51 (B*51011); HLA-B52 (B*52011); HLA-B54 (B*5401); HLA-B55 (B*5502); HLA-B59 (B*5901); HLA-Cw1 (Cw*0102); HLA-Cw1 (Cw*0103); HLA-Cw3 (Cw*03031); HLA-Cw3 (Cw*03041); HLA-Cw4 (Cw*04011); HLA-Cw6 (Cw*0602); HLA-Cw7 (Cw*0702); HLA-Cw8 (Cw*0801); HLA-Cw12 (Cw*12022); HLA-Cw14 (Cw*14021); HLA-Cw14 (Cw*1403); HLA-Cw15 (Cw*15021); HLA-Cx 52 (Cw 12) (Cw*1201); HLA-Cx52 (Cw12) (Cw*1201). Human Class II HLA alleles include, without limitation, HLA-DA alpha 1-4 (pDA alpha 1-4); HLA-DA alpha 1-5 (pDA alpha 1-5); HLA-DA beta 5 (pDA beta 5); HLA-DC alpha 107 (pDC alpha 107); HLA-DO alpha 20 (pDO alpha 20); HLA-DQ beta155 (pDQ beta155); HLA-DR alpha 11 (pDR alpha 11); HLA-DR beta 134 (pDR beta 134); HLA DR beta 5 (TOK H5 DR beta); HLA-DR beta 4 (YT158); HLA-DQA1 (pgDQ4A); HLA-DQB1 (pg DQ1B); HLA-DQB1 (pg DQ1BS); HLA-DRA (DRA2EH); HLA-DPA1 (DPA 02022); HLA-DPB1 (DPB0202); HLA-DRB1 (K b DRB 10803); HLA-DRB1 (K b DRB 11201); HLA-DRB 1 (K b DRB 11302); HLA-DRB3 (DRB30301 EMJ-4); HLA-DQA1 (DQA10501 AMALA-4); HLA-DQB1 (DQB10301 AMALA-4); HLA-DQA1 (DQA10101 KAS1163-6); and HLA-DQB1 (DQB 10503 EK2-4).

Activated Immune Cells

[0069] The present invention features activated immune cells capable of specifically binding to an immune response stimulating peptide when the peptide is bound to an antigen-presenting molecule (e.g., an MHC molecule (e.g., an HLA class I molecule)). In one embodiment, activated immune cells (e.g., cytotoxic T cells) may be generated in vitro according to the methods described in, e.g., U.S. Pat. No. 6,130,087, hereby incorporated by reference. Immune cells (e.g., T cells) may be, e.g., cultured with the antigen presenting cells (e.g., dendritic cells, macrophages, monocytes, and B cells) that present the immune response stimulating peptide in complex with a histocompatibility molecule, thereby activating the immune cells such that the activated immune cells now target cells presenting the immune response stimulating peptide on its surface in a complex with a histocompatibility molecule (e.g., an HLA class I molecule). Other methods for activating immune cells are described in U.S. Pat. Nos. 5,928,643, 6,074,635, and 6,210,873, hereby incorporated by reference.

Antigen-Presenting Cells

[0070] The present invention features an antigen-presenting cell that includes, on its surface, a complex between an antigen-presenting molecule and any one of the immune response stimulating peptides described herein. Antigen-presenting cells may be prepared, e.g., by contacting a cell having antigen-presenting ability (e.g., dendritic cells, macrophages, B cells, monocytes, fibroblasts, thymic epithelial cells, thyroid epithelial cells, glial cells, pancreatic beta cells, or vascular endothelial cells) with any one of the immune response stimulating peptides described herein. Such cells may be isolated from any of a variety of biological fluids, tissues, and organs (e.g., peripheral blood, bone marrow, tumor-infiltrating cells, peritumoral tissues, infiltrating cells, lymph nodes, spleen, skin, or umbilical cord blood).

[0071] Methods for preparing antigen-presenting cells are described in, e.g., U.S. Pat. No. 6,787,164, hereby incorporated by reference. Briefly, antigen-presenting cells may be engineered using gene transfer techniques (e.g., by the insertion of one or more recombinant or synthetic nucleic acid sequences encoding the immune response stimulating peptide) such that the peptides are expressed in effective amounts in the recipient host cell. By "effective amount" is meant that expression is sufficient to enable the recipient cell to provoke the desired immune response in vivo. For gene transfer into the cells to express the selected molecules, the nucleic acid may be directly introduced ex vivo in the form of "naked" nucleic acid, e.g. by microinjection, electroporation, as calcium-phosphate-DNA gels, with DEAE dextran, or in encapsulated form (e.g. in vesicles such as liposomes), or in a suitable viral vector. Expression of recombinant genes of interest after introduction into the antigen-presenting cells is confirmed by, e.g., immunoassays or biological assays for functional activity of the protein product. For example, expression of introduced molecules into cells may be confirmed by detecting the binding of labeled antibodies (specific for the immune response stimulating peptide and) to the antigen-presenting cells using assays such as, e.g., FACS or ELISA. Biological activity of the engineered cells can be verified, for example, in in vitro assays and in animal models (e.g., mice or non-human primates) prior to testing in humans. The ability of the engineered cells of the invention to function as desired, e.g. to process and present antigens for activating an immune response, may be tested using in vitro or in vivo assays. Immune cell activation (e.g., T cell activation) may be detected by various known methods, including measuring changes in the proliferation of immune cells, killing of target cells, and secretion of certain regulatory factors (e.g., lymphokines), expression of mRNA of certain immunoregulatory molecules, or a combination of these events.

[0072] As an alternative to gene transfer, the immune response stimulating peptides described herein may be added to antigen-presenting cells in culture and "loaded" on the antigen-presenting cell for presentation of the molecules to, e.g., T cells (see, e.g., Tykocinski et al., Amer. J. Pathol. 148: 1-16, 1996, hereby incorporated by reference). Peptide or protein pulsing (e.g., co-culturing) may also be used (Inaba et al., J. Exp. Med. 172: 631-640, 1990). Alternatively, peptides may be introduced to cell surfaces via fusion with liposomes bearing the selected immune response stimulating peptides (Coeshott et al., J. Immunol. 134: 1343-1348, 1985).

[0073] The antigen-presenting cells may be suspended in any known physiologically compatible pharmaceutical carrier such as cell culture medium, physiological saline, or phosphate-buffered saline to form a physiologically acceptable, aqueous pharmaceutical composition. Parenteral vehicles include, e.g., sodium chloride solution, Ringer's dextrose, dextrose and sodium chloride, or lactated Ringer's. The antigen-presenting cells may be introduced into the subject to be treated by using one of a number of methods of administration. For example, the antigen presenting cells may be inoculated (with or without adjuvant) parenterally (including, for example, intravenous, intra-arterial, intraperitoneal, intramuscular, intradermal, and subcutaneous), by ingestion, or applied to mucosal surfaces. Alternatively, the antigen-presenting cells of the invention may be administered locally by direct injection into, e.g., a cancerous lesion or infected tissue.

[0074] The antigen-presenting cells of the invention are introduced in at least one dose into a subject in need thereof (e.g., a prostate cancer patient), with sufficient numbers of antigen-presenting cells to activate immune cells of the immune system and induce an immune response, e.g., against the cancer antigen. The cells may be administered in a single infusion containing at least, e.g., 10⁶ to 10¹² cells, or in multiple sequential infusions containing the same number of cells.

Antibodies or Antigen-Binding Fragments

[0075] Antibodies or antigen-binding fragments of the invention include, e.g., the IgG, IgA, IgM, IgD, and IgE isotypes. Antibodies or antibody fragments of the invention, as used herein, contain one or more complementarity determining regions (CDR) or binding peptides that bind to target proteins (e.g., a tumor-specific protein, such as a prostate tumor specific protein (e.g., ERG and SIM2) or an immune response stimulating peptide). In some embodiments, the antibodies or antigen-binding fragments specifically bind to an immune response stimulating peptide when the peptide is bound to an antigen-presenting molecule (e.g., an HLA class I molecule).

[0076] Many of the antibodies, or fragments thereof, described herein can undergo non-critical amino-acid substitutions, additions or deletions in both the variable and constant regions without loss of binding specificity or effector functions, or intolerable reduction of binding affinity (e.g., below about 10^-7 M). Usually, an antibody or antibody fragment incorporating such alterations exhibits substantial sequence identity to a reference antibody or antibody fragment from which it is derived. Occasionally, a mutated antibody or antibody fragment can be selected having the same specificity and increased affinity compared with a reference antibody or antibody fragment from which it was derived. Phage-display technology offers powerful techniques for selecting such antibodies. See, e.g., Dower et al., WO 91/17271 McCafferty et al., WO 92/01047; and Huse, WO 92/06204, hereby incorporated by reference.

[0077] Antibody fragments include separate variable heavy chains, variable light chains, Fab, Fab', F(ab')₂, Fabc, and scFv. Fragments can be produced by enzymatic or chemical separation of intact immunoglobulins. For example, a F(ab')₂ fragment can be obtained from an IgG molecule by proteolytic digestion with pepsin at pH 3.0-3.5 using standard methods such as those described in Harlow and Lane, Antibodies: A Laboratory Manual, Cold Spring Harbor Pubs., New York, 1988. Fab fragments may be obtained from F(ab')₂ fragments by limited reduction, or from whole antibody by digestion with papain in the presence of reducing agents. Fragments can also be produced by recombinant DNA techniques. Segments of nucleic acids encoding selected fragments are produced by digestion of full-length coding sequences with restriction enzymes, or by de novo synthesis. Often fragments are expressed in the form of phage-coat fusion proteins. This manner of expression is advantageous for affinity-sharpening of antibodies.

[0078] Methods of preparing chimeric and humanized antibodies and antibody fragments are described in, e.g., U.S. Pat. Nos. 4,816,567; 5,530,101; 5,622,701; 5,800,815; 5,874,540; 5,914,110; 5,928,904; 6,210,670; 6,677,436; and 7,067,313 and U.S. Patent Application Nos. 2002/0031508; 2004/0265311; and 2005/0226876. Preparation of antibody or antigen-binding fragments thereof is further described in, e.g., U.S. Pat. Nos. 6,331,415; 6,818,216; and 7,067,313.

Adjuvants

[0079] Suitable adjuvants for compositions of the present invention comprise those adjuvants that are capable of enhancing an immune response to the peptides (e.g., immune response stimulating peptides (e.g., ERG or SIM2 peptides)), antibodies or antigen-binding fragments thereof, activated immune cells, and antigen-presenting cells of the present invention. Adjuvants are well known in the art (see, e.g., Vaccine Design-The Subunit and Adjuvant Approach, 1995, Pharmaceutical Biotechnology, Volume 6, Eds. Powell and Newman, Plenum Press, New York and London, hereby incorporated by reference).

[0080] Preferred adjuvants for use in the compositions of the present invention include aluminum or calcium salts (e.g., hydroxide or phosphate salts). A desirable adjuvant is an aluminum hydroxide gel such as Alhydrogel®. For aluminum hydroxide gels (alum), the peptides (e.g., immune response stimulating peptides (e.g., ERG or SIM2 peptides)), antibodies or antigen-binding fragments thereof, activated immune cells, and antigen-presenting cells are admixed with the adjuvant so that between 50 to 800 μg of aluminum are present per dose, and preferably, between 400 and 600 μg are present.

[0081] Another adjuvant for use in the compositions of the present invention is an emulsion. An emulsion can be an oil-in-water emulsion or a water-in-oil emulsion. In addition to the peptides, antibodies or antigen-binding fragments thereof, activated immune cells, and antigen-presenting cells, such emulsions comprise an oil phase of, e.g., squalene or squalane and a dispersing agent. Non-ionic dispersing agents (e.g., mono- and di-C₁₂-C₂4-fatty acid esters of sorbitan and mannide, such as sorbitan mono-stearate, sorbitan mono-oleate, and mannide mono-oleate) may also be used.

[0082] Water-in-oil emulsions may include squalene and mannide mono-oleate (Arlacel® A), optionally with squalane, emulsified in the composition of the invention. Well-known examples of such emulsions include Montanide® ISA-720 and Montanide® ISA-703 (Seppic, Castres, France), each of which is understood to contain both squalene and squalane, with squalene predominating in each, but to a lesser extent in Montanide® ISA-703. Montanide® ISA-720 may also be used with an oil-to-water ratio of 7:3 (w/w). Other oil-in-water emulsion adjuvants include those disclosed in WO 95/17210 and EP 0399842, hereby incorporated by reference.

[0083] The use of small molecule adjuvants is also contemplated herein. Small molecule adjuvants include 7-substituted-8-oxo- or 8-sulfo-guanosine derivatives (e.g., 7-allyl-8-oxoguanosine (loxoribine)), described in U.S. Pat. Nos. 4,539,205; 4,643,992; 5,011,828; and 5,093,318; herein incorporated by reference.

[0084] Additional adjuvants include monophosphoryl lipid A (MPL) (available from Corixa Corp. (see, U.S. Pat. No. 4,987,237)), CPG available from Coley Pharmaceutical Group, QS21 (available from Aquila Biopharmaceuticals, Inc.), SBAS2 (available from SmithKline Beecham), muramyl dipeptide analogues described in U.S. Pat. No. 4,767,842, and MF59 (available from Chiron Corp. (see, U.S. Pat. Nos. 5,709,879 and 6,086,901)). Other adjuvants include the active saponin fractions derived from the bark of the South American tree Quillaja Saponaria Molina (e.g., Quil® A). Derivatives of Quil® A, for example QS21 (an HPLC purified fraction derivative of Quil® A), and the method of its production are disclosed in U.S. Pat. No. 5,057,540. In addition to QS21 (known as QA21), other fractions such as QA17 are also disclosed.

[0085] 3-De-O-acylated monophosphoryl lipid A is a well-known adjuvant manufactured by Ribi Immunochem. The adjuvant contains three components extracted from bacteria: monophosphoryl lipid (MPL) A, trehalose dimycolate (TDM), and cell wall skeleton (CWS) in a 2% squalene/Tween® 80 emulsion. This adjuvant can be prepared by the methods taught in GB 2122204B. A preferred form of 3-de-O-acylated monophosphoryl lipid A is in the form of an emulsion having a small particle size of less than 0.2 μm in diameter (EP 0689454 B1).

[0086] The muramyl dipeptide adjuvants include N-acetyl-muramyl-L-threonyl-D-isoglutamine (thr-MDP; U.S. Pat. No. 4,606,918), N-acetyl-nor-muramyl-L-alanyl-D-isoglutamine (CGP 11637, referred to as nor-MDP), and N-acteryl-muramyl-L-alanyl-D-isoglutaminyl-L-alanine-2-(1',2'-dipalmitoyl- -sn-glycero-3-hydroxyphosphoryloxy)-ethylamin (CGP) 1983A, referred to as MTP-PE.

[0087] Adjuvant mixtures include, e.g., combinations of 3D-MPL and QS21 (see, e.g., EP0671948 B1), oil-in-water emulsions including 3D-MPL and QS21 (see, e.g., WO 95/17210 and PCT/EP98/05714), 3D-MPL formulated with other carriers (see, e.g., EP 0689454 B1), QS21 formulated in cholesterol-containing liposomes (see, e.g., WO 96/33739), or immunostimulatory oligonucleotides (see, e.g., WO 96/02555). Alternative adjuvants include those described in, e.g., WO 99/52549 and non-particulate suspensions of polyoxyethylene ether (see, e.g., UK Patent Application No. 9807805.8).

[0088] Adjuvants are utilized in various amounts, which can vary with the adjuvant, subject, and the components of the composition (e.g., compositions including peptides (e.g., immune response stimulating peptides (e.g., ERG or SIM2 peptides), antibodies or antigen-binding fragments thereof, activated immune cells, and antigen-presenting cells) being administered. Typical amounts can vary from about 1 μg to about 50 mg per dosage. Those skilled in the art know that appropriate concentrations or amounts can be readily determined.

Conjugation to Cytotoxic and Other Therapeutic Agents

[0089] The agents of the invention (e.g., immune response stimulating peptides and antibodies to these peptides or antigen-binding fragments thereof) may be coupled to or administered with any known cytotoxic or therapeutic moiety to form an agent or composition of the invention, respectively, that can be administered to treat, inhibit, reduce, or ameliorate disease (e.g., prostate cancer) or one or more symptoms of disease. Examples include but are not limited to antineoplastic agents such as: Acivicin; Aclarubicin; Acodazole Hydrochloride; Acronine; Adozelesin; Adriamycin; Aldesleukin; Altretamine; Ambomycin; A. metantrone Acetate; Aminoglutethimide; Amsacrine; Anastrozole; Anthramycin; Asparaginase; Asperlin; Azacitidine; Azetepa; Azotomycin; Batimastat; Benzodepa; Bicalutamide; Bisantrene Hydrochloride; Bisnafide Dimesylate; Bizelesin; Bleomycin Sulfate; Brequinar Sodium; Bropirimine; Busulfan; Cactinomycin; Calusterone; Camptothecin; Caracemide; Carbetimer; Carboplatin; Carmustine; Carubicin Hydrochloride; Carzelesin; Cedefingol; Chlorambucil; Cirolemycin; Cisplatin; Cladribine; Combretestatin A-4; Crisnatol Mesylate; Cyclophosphamide; Cytarabine; Dacarbazine; DACA (N-[2-(Dimethyl-amino) ethyl]acridine-4-carboxamide); Dactinomycin; Daunorubicin Hydrochloride; Daunomycin; Decitabine; Dexormaplatin; Dezaguanine; Dezaguanine Mesylate; Diaziquone; Docetaxel; Dolasatins; Doxorubicin; Doxorubicin Hydrochloride; Droloxifene; Droloxifene Citrate; Dromostanolone Propionate; Duazomycin; Edatrexate; Eflornithine Hydrochloride; Ellipticine; Elsamitrucin; Enloplatin; Enpromate; Epipropidine; Epirubicin Hydrochloride; Erbulozole; Esorubicin Hydrochloride; Estramustine; Estramustine Phosphate Sodium; Etanidazole; Ethiodized Oil I 131; Etoposide; Etoposide Phosphate; Etoprine; Fadrozole Hydrochloride; Fazarabine; Fenretinide; Floxuridine; Fludarabine Phosphate; Fluorouracil; 5-FdUMP; Fluorocitabine; Fosquidone; Fostriecin Sodium; Gemcitabine; Gemcitabine Hydrochloride; Gold Au 198; Homocamptothecin; Hydroxyurea; Idarubicin Hydrochloride; Ifosfamide; Ilmofosine; Interferon Alfa-2a; Interferon Alfa-2b; Interferon Alfa-n1; Interferon Alfa-n3; Interferon Beta-I a; Interferon Gamma-I b; Iproplatin; Irinotecan Hydrochloride; Lanreotide Acetate; Letrozole; Leuprolide Acetate; Liarozole Hydrochloride; Lometrexol Sodium; Lomustine; Losoxantrone Hydrochloride; Masoprocol; Maytansine; Mechlorethamine Hydrochloride; Megestrol Acetate; Melengestrol Acetate; Melphalan; Menogaril; Mercaptopurine; Methotrexate; Methotrexate Sodium; Metoprine; Meturedepa; Mitindomide; Mitocarcin; Mitocromin; Mitogillin; Mitomalcin; Mitomycin; Mitosper; Mitotane; Mitoxantrone Hydrochloride; Mycophenolic Acid; Nocodazole; Nogalamycin; Ormaplatin; Oxisuran; Paclitaxel; Pegaspargase; Peliomycin; Pentamustine; PeploycinSulfate; Perfosfamide; Pipobroman; Piposulfan; Piroxantrone Hydrochloride; Plicamycin; Plomestane; Porfimer Sodium; Porfiromycin; Prednimustine; Procarbazine Hydrochloride; Puromycin; Puromycin Hydrochloride; Pyrazofurin; Rhizoxin; Rhizoxin D; Riboprine; Rogletimide; Safingol; Safingol Hydrochloride; Semustine; Simtrazene; Sparfosate Sodium; Sparsomycin; Spirogermanium Hydrochloride; Spiromustine; Spiroplatin; Streptonigrin; Streptozocin; Strontium Chloride Sr 89; Sulofenur; Talisomycin; Taxane; Taxoid; Tecogalan Sodium; Tegafur; Teloxantrone Hydrochloride; Temoporfin; Teniposide; Teroxirone; Testolactone; Thiamiprine; Thioguanine; Thiotepa; Thymitaq; Tiazofurin; Tirapazamine; Tomudex; TOP53; Topotecan Hydrochloride; Toremifene Citrate; Trestolone Acetate; Triciribine Phosphate; Trimetrexate; Trimetrexate Glucuronate; Triptorelin; Tubulozole Hydrochloride; Uracil Mustard; Uredepa; Vapreotide; Verteporfin; Vinblastine; Vinblastine Sulfate; Vincristine; Vincristine Sulfate; Vindesine; Vindesine Sulfate; Vinepidine Sulfate; Vinglycinate Sulfate; Vinleurosine Sulfate; Vinorelbine Tartrate; Vinrosidine Sulfate; Vinzolidine Sulfate; Vorozole; Zeniplatin; Zinostatin; Zorubicin Hydrochloride; 2-Chlorodeoxyadenosine; 2' Deoxyformycin; 9-aminocamptothecin; raltitrexed; N-propargyl-5,8-dideazafolic acid; 2-chloro-2'-arabino-fluoro-2'-deoxyadenosine; 2-chloro-2'-deoxyadenosine; anisomycin; trichostatin A; hPRL-G129R; CEP-751; linomide; sulfur mustard; nitrogen mustard (mechlor ethamine); cyclophosphamide; melphalan; chlorambucil; ifosfamide; busulfan; N-methyl-Nnitrosourea (MNU); N,N'-Bis (2-chloroethyl)-N-nitrosourea (BCNU); N-(2-chloroethyl)-N' cyclohexyl-N-nitrosourea (CCNU); N-(2-chloroethyl)-N'-(trans-4-methylcyclohexyl-N-nitrosourea (MeCCNU); N-(2-chloroethyl)-N'-(diethyl) ethylphosphonate-N-nitrosourea (fotemustine); streptozotocin; diacarbazine (DTIC); mitozolomide; temozolomide; thiotepa; mitomycin C; AZQ; adozelesin; Cisplatin; Carboplatin; Ormaplatin; Oxaliplatin; C1-973; DWA 2114R; JM216; JM335; Bis (platinum); tomudex; azacitidine; cytarabine; gemcitabine; 6-Mercaptopurine; 6-Thioguanine; Hypoxanthine; teniposide 9-amino camptothecin; Topotecan; CPT-11; Doxorubicin; Daunomycin; Epirubicin; darubicin; mitoxantrone; losoxantrone; Dactinomycin (Actinomycin D); amsacrine; pyrazoloacridine; all-trans retinol; 14-hydroxy-retro-retinol; all-trans retinoic acid; N-(4-Hydroxyphenyl) retinamide; 13-cis retinoic acid; 3-Methyl TTNEB; 9-cis retinoic acid; fludarabine (2-F-ara-AMP); or 2-chlorodeoxyadenosine (2-Cda).

[0090] Other therapeutic compounds include, but are not limited to, 20-pi-1,25 dihydroxyvitamin D3; 5-ethynyluracil; abiraterone; aclarubicin; acylfulvene; adecypenol; adozelesin; aldesleukin; ALL-TK antagonists; altretamine; ambamustine; amidox; amifostine; aminolevulinic acid; amrubicin; amsacrine; anagrelide; anastrozole; andrographolide; angiogenesis inhibitors; antagonist D; antagonist G; antarelix; anti-dorsalizing morphogenetic protein-1; antiandrogen, prostatic carcinoma; antiestrogen; antineoplaston; antisense oligonucleotides; aphidicolin glycinate; apoptosis gene modulators; apoptosis regulators; apurinic acid; ara-CDP-DL-PTBA; argininedeaminase; asulacrine; atamestane; atrimustine; axinastatin 1; axinastatin 2; axinastatin 3; azasetron; azatoxin; azatyrosine; baccatin III derivatives; balanol; batimastat; BCR/ABL antagonists; benzochlorins; benzoylstaurosporine; beta lactam derivatives; beta-alethine; betaclamycin B; betulinic acid; bFGF inhibitor; bicalutamide; bisantrene; bisaziridinylspermine; bisnafide; bistratene A; bizelesin; breflate; bleomycin A2; bleomycin B2; bropirimine; budotitane; buthionine sulfoximine; calcipotriol; calphostin C; camptothecin derivatives (e.g., 10-hydroxy-camptothecin); canarypox IL-2; capecitabine; carboxamide-amino-triazole; carboxyamidotriazole; CaRest M3; CARN 700; cartilage derived inhibitor; carzelesin; casein kinase inhibitors (ICOS); castanospermine; cecropin B; cetrorelix; chlorins; chloroquinoxaline sulfonamide; cicaprost; cis-porphyrin; cladribine; clomifene analogues; clotrimazole; collismycin A; collismycin B; combretastatin A4; combretastatin analogue; conagenin; crambescidin 816; crisnatol; cryptophycin 8; cryptophycin A derivatives; curacin A; cyclopentanthraquinones; cycloplatam; cypemycin; cytarabine ocfosfate; cytolytic factor; cytostatin; dacliximab; decitabine; dehydrodidemnin B; 2' deoxycoformycin (DCF); deslorelin; dexifosfamide; dexrazoxane; dexverapamil; diaziquone; didemnin B; didox; diethylnorspermine; dihydro-5-azacytidine; dihydrotaxol, 9-; dioxamycin; diphenyl spiromustine; discodermolide; docosanol; dolasetron; doxifluridine; droloxifene; dronabinol; duocarmycin SA; ebselen; ecomustine; edelfosine; edrecolomab; eflornithine; elemene; emitefur; epirubicin; epothilones (A, R═H; B, R═Me); epithilones; epristeride; estramustine analogue; estrogen agonists; estrogen antagonists; etanidazole; etoposide; etoposide 4'-phosphate (etopofos); exemestane; fadrozole; fazarabine; fenretinide; filgrastim; finasteride; flavopiridol; flezelastine; fluasterone; fludarabine; fluorodaunorunicin hydrochloride; forfenimex; formestane; fostriecin; fotemustine; gadolinium texaphyrin; gallium nitrate; galocitabine; ganirelix; gelatinase inhibitors; gemcitabine; glutathione inhibitors; hepsulfam; heregulin; hexamethylene bisacetamide; homoharringtonine (HHT); hypericin; ibandronic acid; idarubicin; idoxifene; idramantone; ilmofosine; ilomastat; imidazoacridones; imiquimod; immunostimulant peptides; insulin-like growth factor-1 receptor inhibitor; interferon agonists; interferons; interleukins; iobenguane; iododoxorubicin; ipomeanol, 4-; irinotecan; iroplact; irsogladine; isobengazole; isohomohalicondrin B; itasetron; jasplakinolide; kahalalide F; lamellarin-N triacetate; lanreotide; leinamycin; lenograstim; lentinan sulfate; leptolstatin; letrozole; leukemia inhibiting factor; leukocyte alpha interferon; leuprolide+estrogen+progesterone; leuprorelin; levamisole; liarozole; linear polyamine analogue; lipophilic disaccharide peptide; lipophilic platinum compounds; lissoclinamide 7; lobaplatin; lombricine; lometrexol; lonidamine; losoxantrone; lovastatin; loxoribine; lurtotecan; lutetium texaphyrin; lysofylline; lytic peptides; maytansine; mannostatin A; marimastat; masoprocol; maspin; matrilysin inhibitors; matrix metalloproteinase inhibitors; menogaril; rnerbarone; meterelin; methioninase; metoclopramide; MIF inhibitor; ifepristone; miltefosine; mirimostim; mismatched double stranded RNA; mithracin; mitoguazone; mitolactol; mitomycin analogues; mitonafide; mitotoxin fibroblast growth factor-saporin; mitoxantrone; mofarotene; molgramostim; monoclonal antibody, human chorionic gonadotrophin; monophosphoryl lipid A+myobacterium cell wall sk; mopidamol; multiple drug resistance gene inhibitor; multiple tumor suppressor 1-based therapy; mustard anticancer agent; mycaperoxide B; mycobacterial cell wall extract; myriaporone; N-acetyldinaline; N-substituted benzamides; nafarelin; nagrestip; naloxone+pentazocine; napavin; naphterpin; nartograstim; nedaplatin; nemorubicin; neridronic acid; neutral endopeptidase; nilutamide; nisamycin; nitric oxide modulators; nitroxide antioxidant; nitrullyn; 06-benzylguanine; octreotide; okicenone; oligonucleotides; onapristone; ondansetron; ondansetron; oracin; oral cytokine inducer; ormaplatin; osaterone; oxaliplatin; oxaunomycin; paclitaxel analogues; paclitaxel derivatives; palauamine; palmitoylrhizoxin; pamidronic acid; panaxytriol; panomifene; parabactin; pazelliptine; pegaspargase; peldesine; pentosan polysulfate sodium; pentostatin; pentrozole; perflubron; perfosfamide; perillyl alcohol; phenazinomycin; phenylacetate; phosphatase inhibitors; picibanil; pilocarpine hydrochloride; pirarubicin; piritrexim; placetin A; placetin B; plasminogen activator inhibitor; platinum complex; platinum compounds; platinum-triamine complex; podophyllotoxin; porfimer sodium; porfiromycin; propyl bis-acridone; prostaglandin J2; proteasome inhibitors; protein A-based immune modulator; protein kinase C inhibitor; protein kinase C inhibitors, microalgal; protein tyrosine phosphatase inhibitors; purine nucleoside phosphorylase inhibitors; purpurins; pyrazoloacridine; pyridoxylated hemoglobin polyoxyethylene conjugate; raf antagonists; raltitrexed; ramosetron; ras farnesyl protein transferase inhibitors; ras inhibitors; ras-GAP inhibitor; retelliptine demethylated; rhenium Re 186 etidronate; rhizoxin; ribozymes; RII retinamide; rogletimide; rohitukine; romurtide; roquinimex; rubiginone B 1; ruboxyl; safingol; saintopin; SarCNU; sarcophytol A; sargramostim; Sdi 1 mimetics; semustine; senescence derived inhibitor 1; sense oligonucleotides; signal transduction inhibitors; signal transduction modulators; single chain antigen binding protein; sizofiran; sobuzoxane; sodium borocaptate; sodium phenylacetate; solverol; somatomedin binding protein; sonermin; sparfosic acid; spicamycin D; spiromustine; splenopentin; spongistatin 1; squalamine; stem cell inhibitor; stem-cell division inhibitors; stipiamide; stromelysin inhibitors; sulfinosine; superactive vasoactive intestinal peptide antagonist; suradista; suramin; swainsonine; synthetic glycosaminoglycans; tallimustine; tamoxifen methiodide; tauromustine; tazarotene; tecogalan sodium; tegafur; tellurapyrylium; telomerase inhibitors; temoporfin; temozolomide; teniposide; tetrachlorodecaoxide; tetrazomine; thaliblastine; thalidomide; thiocoraline; thrombopoietin; thrombopoietin mimetic; thymalfasin; thymopoietin receptor agonist; thymotrinan; thyroid stimulating hormone; tin ethyl etiopurpurin; tirapazamine; titanocene dichloride; topotecan; topsentin; toremifene; totipotent stem cell factor; translation inhibitors; tretinoin; triacetyluridine; triciribine; trimetrexate; triptorelin; tropisetron; turosteride; tyrosine kinase inhibitors; tyrphostins; UBC inhibitors; ubenimex; urogenital sinus-derived growth inhibitory factor; urokinase receptor antagonists; vapreotide; variolin B; vector system, erythrocyte gene therapy; velaresol; veramine; verdins; verteporfin; vinorelbine; vinxaltine; vitaxin; vorozole; zanoterone; zeniplatin; zilascorb; and zinostatin stimalamer.

[0091] The agents of the invention (e.g., immune response stimulating peptides or antibodies or antigen-binding fragments thereof) can also include site-specifically conjugated molecules and moieties. Site-specific conjugation allows for the controlled stoichiometric attachment of a cytotoxic or therapeutic agent to specific residues of an agent of the invention.

[0092] The agents of the invention (e.g., immune response stimulating peptides and antibodies or antigen-binding fragments thereof), or any molecule or moiety conjugated thereto, can also be coupled to a lytic peptide. Such lytic peptides induce cell death and include, but are not limited to, streptolysin O; stoichactis toxin; phallolysin; staphylococcus alpha toxin; holothurin A; digitonin; melittin; lysolecithin; cardiotoxin; and cerebratulus A toxin (Kem et al., J. Biol. Chem. 253(16):5752-5757, 1978). An agent of the invention can also be conjugated to a synthetic peptide that shares some sequence homology or chemical characteristics with any of the naturally occurring peptide lysins; such characteristics include, but are not limited to, linearity, positive charge, amphipathicity, and formation of alpha-helical structures in a hydrophobic environment (Leuschner et al., Biology of Reproduction 73:860-865, 2005). The agents of the invention (e.g., immune response stimulating peptides and antibodies or antigen-binding fragments thereof) can also be coupled to an agent that induces complement-mediated cell lysis such as, for example, the immunoglobulin F, subunit. The agents of the invention (e.g., immune response stimulating peptides and antibodies or antigen-binding fragments thereof) can also coupled to any member of the phospholipase family of enzymes (including phospholipase A, phospholipase B, phospholipase C, or phospholipase D) or to a catalytically-active subunit thereof.

[0093] An agent of the invention can also be coupled to a radioactive agent to form an agent that can be used for detection or therapeutic applications. Radioactive agents that can be used include but are not limited to Fibrinogen ¹²⁵I; Fludeoxyglucose ¹⁸F; Fluorodopa ¹⁸F; Insulin ¹²⁵I; Insulin ¹³¹I; lobenguane ¹²³I; Iodipamide Sodium ¹³¹I; Iodoantipyrine ¹³¹I; Iodocholesterol ¹³¹I; lodohippurate Sodium ¹²³I; Iodohippurate Sodium ¹²⁵I; Iodohippurate Sodium ¹³¹I; Iodopyracet ¹²⁵I; Iodopyracet ¹³¹I; lofetamine Hydrochloride ¹²³I; Iomethin ¹²⁵I; Iomethin ¹³¹I; Iothalamate Sodium ¹²⁵I; Iothalamate Sodium ¹³¹I; tyrosine ¹³¹I; Liothyronine ¹²⁵I; Liothyronine ¹³¹I; Merisoprol Acetate ¹⁹⁷Hg; Merisoprol Acetate ²⁰³Hg; Merisoprol ¹⁹⁷Hg; Selenomethionine ⁷⁵Se; Technetium ⁹⁹mTc Antimony Trisulfide Colloid; Technetium ⁹⁹mTc Bicisate; Technetium ⁹⁹mTc Disofenin; Technetium ⁹⁹mTc Etidronate; Technetium ⁹⁹mTc Exametazime; Technetium ⁹⁹mTc Furifosmin; Technetium ⁹⁹mTc Gluceptate; Technetium ⁹⁹mTc Lidofenin; Technetium ⁹⁹mTc Mebrofenin; Technetium ⁹⁹mTc Medronate; Technetium ⁹⁹mTc Medronate Disodium; Technetium ⁹⁹mTc Mertiatide; Technetium ⁹⁹mTc Oxidronate; Technetium ⁹⁹mTc Pentetate; Technetium ⁹⁹mTc Pentetate Calcium Trisodium; Technetium ⁹⁹mTc Sestamibi; Technetium ⁹⁹mTc Siboroxime; Technetium ⁹⁹mTc; Succimer; Technetium ⁹⁹mTc Sulfur Colloid; Technetium ⁹⁹mTc Teboroxime; Technetium ⁹⁹mTc Tetrofosmin; Technetium ⁹⁹mTc Tiatide; Thyroxine ¹²⁵I; Thyroxine ¹³¹I; Tolpovidone ¹³¹I; Triolein ¹²⁵I; or Triolein ¹³¹I.

[0094] Additionally, a radioisotope could be site-specifically conjoined to an HSA linker or HSA linker conjugate. The available reactive groups could be used to conjugate site-specific bifunctional chelating agents for labeling of radioisotopes, including ¹²³I, ¹²³I, ¹²⁴I, ¹²⁵I, ¹³¹I, ⁹⁹mTc, ¹¹¹In, ⁶4Cu, ⁶⁷Cu, ¹⁸6Re, ¹⁸⁸Re, ¹⁷⁷Lu, ⁹⁰Y, ⁷⁷As, ⁷²AS, ⁸⁶Y, ⁸⁹Zr, ²¹¹At, ²¹²Bi, ²¹³Bi, or ²²⁵Ac.

[0095] The agents of the invention may also be conjugated to other, not necessarily therapeutic, moieties for the purpose of enhancing, e.g., stability or localization.

[0096] Techniques for conjugating therapeutic agents to proteins, and in particular to antibodies, are well-known (e.g., Amon et al., "Monoclonal Antibodies For Immunotargeting Of Drugs In Cancer Therapy," in Monoclonal Antibodies And Cancer Therapy (Reisfeld et al., eds., Alan R. Liss, Inc., 1985); Hellstrom et al., "Antibodies For Drug Delivery," in Controlled Drug Delivery (Robinson et al., eds., Marcel Dekker, Inc., 2nd ed. 1987); Thorpe, "Antibody Carriers Of Cytotoxic Agents In Cancer Therapy: A Review," in Monoclonal Antibodies '84: Biological And Clinical Applications (Pinchera et al., eds., 1985); "Analysis, Results, and Future Prospective of the Therapeutic Use of Radiolabeled Antibody In Cancer Therapy," in Monoclonal Antibodies For Cancer Detection And Therapy (Baldwin et al., eds., Academic Press, 1985); Thorpe et al., Immunol. Rev. 62:119-58 (1982); and Doronina et al., "Development of potent monoclonal antibody auristatin conjugates for cancer therapy," Nature Biotech. 21:(7)778-784 (2003)). See also, e.g., PCT publication WO 89/12624.

Additional Therapies

[0097] The agents of the invention (e.g., immune response stimulating peptides, activated immune cells, antigen-presenting cells, and antibodies or antigen-binding fragments thereof) may be administered alone or in combination with other known therapies for the treatment of cancer (e.g., prostate cancer). Such therapies for prostate cancer, for example, include, e.g., hormone therapy (e.g., androgen ablation (e.g., administration of luteinizing hormone-releasing hormone agonists (e.g., leuprolide, goserelin, or buserelin), antiandrogens (e.g., flutamide or nilutamide), adrenal gland inhibitors (e.g., ketoconazole or aminoglutethimide), or estrogen administration)), chemotherapy, radiation therapy, ultrasound therapy, or surgery (e.g., pelvic lymphadenectomy, transurethral resection of the prostate, radial prostatectomy, retropubic prostatectomy, or perineal prostatectomy). Such treatments are described in, e.g., U.S. Pat. Nos. 6,184,249; 6,245,807; 6,472,415; and 6,537,988, hereby incorporated by reference.

Administration and Dosage

[0098] Pharmaceutical formulations of a therapeutically effective amount of an agent of the invention (e.g., immune response stimulating peptides, activated immune cells, antigen-presenting cells, and antibodies or antigen-binding fragments thereof), or pharmaceutically acceptable salts thereof, can be administered orally, parenterally (e.g., intramuscular, intraperitoneal, intravenous, or subcutaneous injection, inhalation, intradermally, optical drops, or implant), nasally, vaginally, rectally, sublingually, or topically, in admixture with a pharmaceutically acceptable carrier adapted for the route of administration.

[0099] Methods well known in the art for making formulations are found, for example, in Remington's Pharmaceutical Sciences (18^th edition), ed. A. Gennaro, 1990, Mack Publishing Company, Easton, Pa. Compositions intended for oral use may be prepared in solid or liquid forms according to any method known to the art for the manufacture of pharmaceutical compositions. The compositions may optionally contain sweetening, flavoring, coloring, perfuming, and/or preserving agents in order to provide a more palatable preparation. Solid dosage forms for oral administration include capsules, tablets, pills, powders, and granules. In such solid forms, the active compound is admixed with at least one inert pharmaceutically acceptable carrier or excipient. These may include, for example, inert diluents, such as calcium carbonate, sodium carbonate, lactose, sucrose, starch, calcium phosphate, sodium phosphate, or kaolin. Binding agents, buffering agents, and/or lubricating agents (e.g., magnesium stearate) may also be used. Tablets and pills can additionally be prepared with enteric coatings.

[0100] Liquid dosage forms for oral administration include pharmaceutically acceptable emulsions, solutions, suspensions, syrups, and soft gelatin capsules. These forms contain inert diluents commonly used in the art, such as water or an oil medium. Besides such inert diluents, compositions can also include adjuvants, such as wetting agents, emulsifying agents, and suspending agents.

[0101] Formulations for parenteral administration include sterile aqueous or non-aqueous solutions, suspensions, or emulsions. Examples of suitable vehicles include propylene glycol, polyethylene glycol, vegetable oils, gelatin, hydrogenated naphthalenes, and injectable organic esters, such as ethyl oleate. Such formulations may also contain adjuvants, such as preserving, wetting, emulsifying, and dispersing agents. Biocompatible, biodegradable lactide polymer, lactide/glycolide copolymer, or polyoxyethylene-polyoxypropylene copolymers may be used to control the release of the compounds. Other potentially useful parenteral delivery systems for the agents of the invention include ethylene-vinyl acetate copolymer particles, osmotic pumps, implantable infusion systems, and liposomes.

[0102] Liquid formulations can be sterilized by, for example, filtration through a bacteria-retaining filter, by incorporating sterilizing agents into the compositions, or by irradiating or heating the compositions. Alternatively, they can also be manufactured in the form of sterile, solid compositions, which can be dissolved in sterile water or some other sterile injectable medium immediately before use.

[0103] Compositions for rectal or vaginal administration are preferably suppositories, which may contain, in addition to active substances, excipients such as coca butter or a suppository wax. Compositions for nasal or sublingual administration are also prepared with standard excipients known in the art. Formulations for inhalation may contain excipients, for example, lactose, or may be aqueous solutions containing, for example, polyoxyethylene-9-lauryl ether, glycocholate and deoxycholate, or may be oily solutions for administration in the form of nasal drops or spray, or as a gel.

[0104] The amount of active ingredient (e.g., immune response stimulating peptides, activated immune cells, antigen-presenting cells, or antibodies or antigen-binding fragments thereof) in the compositions of the invention can be varied. One skilled in the art will appreciate that the exact individual dosages may be adjusted somewhat depending upon a variety of factors, including the ingredient being administered, the time of administration, the route of administration, the nature of the formulation, the rate of excretion, the nature of the subject's conditions, and the age, weight, health, and gender of the patient. In addition, the severity of the condition targeted by an agent of the invention will also have an impact on the dosage level. Generally, dosage levels of an agent of the invention of between 0.1 μg/kg to 100 mg/kg of body weight are administered daily as a single dose or divided into multiple doses. Preferably, the general dosage range is between 250 μg/kg to 5.0 mg/kg of body weight per day. Wide variations in the needed dosage are to be expected in view of the differing efficiencies of the various routes of administration. For instance, oral administration generally would be expected to require higher dosage levels than administration by intravenous injection. Variations in these dosage levels can be adjusted using standard empirical routines for optimization, which are well known in the art. In general, the precise therapeutically effective dosage will be determined by the attending physician in consideration of the above-identified factors.

[0105] An agent of the invention (e.g., immune response stimulating peptides, activated immune cells, antigen-presenting cells, or antibodies or antigen-binding fragments thereof) can be administered in a sustained release composition, such as those described in, for example, U.S. Pat. Nos. 5,672,659 and 5,595,760, hereby incorporated by reference. The use of immediate or sustained release compositions depends on the type of condition being treated. If the condition consists of an acute or over-acute disorder, a treatment with an immediate release form will be preferred over a prolonged release composition. Alternatively, for preventative or long-term treatments, a sustained released composition will generally be preferred.

[0106] An agent of the invention (e.g., immune response stimulating peptides, activated immune cells, antigen-presenting cells, or antibodies or antigen-binding fragments thereof) can be prepared in any suitable manner. The agent may be isolated from naturally-occurring sources, recombinantly produced, or produced synthetically, identified from a library, or produced by a combination of these methods. The synthesis of short peptides is well known in the art. As described previously, a peptide portion of any of the agents of the invention can be synthesized according to standard peptide synthesis methods known in the art.

[0107] Methods for administering peptides to a subject are described, for example, in U.S. Pat. Nos. 5,830,851; 5,558,085; 5,916,582; 5,960,792; and 6,720,407, hereby incorporated by reference.

Assessment of Therapy

[0108] After therapeutic treatment with the compositions of the invention described herein, the efficacy of the treatment may be assessed by a number of methods, such as assays that measure T cell proliferation, T cell cytotoxicity, antibody production, reduction in the number of antigen-positive cells or tissues, or clinical responses. An increase in the production of antibodies or immune cells recognizing the selected antigen (e.g., an ERG or SIM2 antigen) will indicate an enhanced immune response. Similarly, an increase in specific lytic activity or specific cytokine production by the subject's immune cells or tumor regression will indicate efficacy. Efficacy may also be indicated by an improvement in or resolution of the disease (e.g., prostate cancer) associated with the reduction or disappearance of the unwanted immune response or an improvement in or resolution of the disease (e.g., prostate cancer) associated with the unwanted immune response.

Diagnostics

[0109] We have shown that ERG and SIM2 are overexpressed in prostate cancer cells and not expressed in non-cancerous prostate cells. Accordingly, the measurement of ERG and SIM2 levels can be used as a tool to diagnose prostate cancer in a subject.

[0110] The present invention features methods and compositions (e.g., immune response stimulating peptides (e.g., ERG or SIM2 peptides), activated immune cells, antigen-presenting cells, and antibodies or antigen-binding fragments thereof) for generating an immune response for the treatment of cancer (e.g., prostate cancer). The methods and compositions can include the measurement of, for example, ERG or SIM2 polypeptides, either free or bound to another molecule, or any fragments or derivatives thereof. The methods can include measurement of absolute levels of ERG or SIM2 or relative levels as compared to a normal reference. For example, a level of ERG or SIM2 in a bodily fluid of less than 5 ng/ml, 4 ng/ml, 3 ng/ml, 2 ng/ml, or less than 1 ng/ml is considered to be predictive of a low risk of prostate cancer or of a good outcome in a patient diagnosed with prostate cancer. A level of ERG or SIM2 in a bodily fluid of greater than 5 ng/ml, 10 ng/ml, 20 ng/ml, 30 ng/ml, 40 ng/ml, or 50 ng/ml is considered diagnostic of prostate cancer or of a poor outcome in a subject already diagnosed with prostate cancer.

For diagnoses based on relative levels of ERG or SIM2, a subject with prostate cancer will show an alteration (e.g., an increase of 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90%, or more) in the expression of an ERG or SIM2 polypeptide (or fragment thereof) as compared to a normal reference sample or level. A normal reference sample can be, for example, a sample taken from the same subject prior to the development of prostate cancer or of symptoms suggestive of prostate cancer, a sample from a subject not having prostate cancer, or a sample of a purified reference polypeptide at a known normal concentration (i.e., not indicative of prostate cancer). By "reference standard or level" is meant a value or number derived from a reference sample. A normal reference standard or level can be a value or number derived from a normal subject.

[0111] For diagnostic assays that include measuring the amount of ERG or SIM2 polypeptide, the ERG or SIM2 polypeptide can include full-length ERG or SIM2 polypeptide, degradation products, alternatively spliced isoforms of ERG or SIM2 polypeptide, enzymatic cleavage products of ERG or SIM2 polypeptide, and the like. In one example, an antibody that specifically binds ERG or SIM2 polypeptide is used for the diagnosis of prostate cancer.

[0112] Standard methods may be used to measure levels of ERG or SIM2 polypeptide in any cell, tissue, or bodily fluid, including, but not limited to, urine, blood, serum, plasma, saliva, or cerebrospinal fluid. Such methods include immunoassay, ELISA, Western blotting using antibodies that specifically bind to ERG or SIM2 polypeptide, and quantitative enzyme immunoassay techniques. Increases in the levels of ERG or SIM2 polypeptide, as compared to normal controls, are considered a positive indicator of prostate cancer.

[0113] ERG or SIM2 nucleic acid molecules, or substantially identical fragments thereof, or fragments or oligonucleotides of ERG or SIM2 that hybridize to ERG or SIM2 at high stringency may be used as a probe to monitor expression of ERG or SIM2 nucleic acid molecules in the diagnostic methods of the invention. Increases in the levels of ERG or SIM2 nucleic acid molecules, as compared to normal controls, are considered a positive indicator of prostate cancer.

[0114] The diagnostic methods described herein can be used individually or in combination with any other diagnostic method for a more accurate diagnosis of the presence of prostate cancer. Examples of additional methods for diagnosing prostate cancer include, e.g., the detection of prostate specific antigen (PSA) in prostate cells, digital rectal exams, trans-rectal ultrasounds, or biopsies (e.g., needle biopsies).

[0115] The invention also provides for a diagnostic test kit. For example, a diagnostic test kit can include antibodies that specifically bind to ERG or SIM2 polypeptide and components for detecting and evaluating binding between the antibodies and the ERG or SIM2 polypeptide. For detection, either the antibody or the ERG or SIM2 polypeptide is labeled and either the antibody or the ERG or SIM2 polypeptide is substrate-bound, such that the ERG or SIM2 polypeptide-antibody interaction can be established by determining the amount of label attached to the substrate following binding between the antibody and the ERG or SIM2 polypeptide. ELISA is a common, art-known method for detecting antibody-substrate interactions and can be provided with the kit of the invention. ERG or SIM2 polypeptides can be detected in virtually any bodily fluid, such as, e.g., urine, plasma, blood, blood serum, semen, or cerebrospinal fluid. A kit that determines an alteration in the level of ERG or SIM2 polypeptide relative to a reference, such as the level present in a normal control, is useful as a diagnostic kit in the methods of the invention. The kit can also contain a standard curve or a reference level or sample indicating levels of ERG or SIM2 that fall within the normal range and levels that would be considered diagnostic of prostate cancer. Desirably, the kit will contain instructions for the use of the kit. In one example, the kit contains instructions for the use of the kit for the diagnosis of prostate cancer. In yet another example, the kit contains instructions for the use of the kit to monitor therapeutic treatment or dosage regimens. The kit may also contain other diagnostics useful in diagnosing prostate cancer, or may be used in combination with known prostate cancer diagnostic measures.

EXAMPLES

Example 1

Identification of Putative Tumor-Associated Antigens (TAAs) for Prostate Cancer Immunotherapy

[0116] In an effort to identify novel putative prostate cancer tumor-associated antigens with expression specificity for prostate cancer over normal prostate or normal non-prostate tissue, we performed a genome-wide gene expression analysis of a prostate cancer and normal prostate microarray generated in our laboratory, validated the candidate TAAs in an external, published prostate cancer tissue array data set, and excluded those with detectable expression in non-prostatic adult tissues.

[0117] First, we used the Affymetrix U133 array to evaluate gene expression in cancer and normal fresh-frozen prostate tissue specimens from our tissue repository. 250 ng of total RNA from the tissue specimens was amplified using Ambion's MessageAmp II mRNA Amplification kit. Biotin-UTP was incorporated during the overnight in vitro transcription step according to the manufacturer's protocol. Gene expression was assessed using Affymetrix's (Santa Clara, Calif.) GeneChip U133 array (Plus 2.0 chip), arrays representing whole human genome transcripts. 15 μg of cRNA was fragmented and hybridized to arrays according to the manufacturer's protocols. The image quality of scanned arrays were determined on the basis of background values, percent present calls, scaling factors, and 3'-5' ratio of β-actin and GAPDH using the BioConductor R packages. The signal value for each transcript was summarized using perfect matched (PM)-only based signal modeling algorithm described in dchip. The PM-only based signaling modeling algorithm yields fewer false positives compared to the PM-MM (mismatched) model. As such, the signal value corresponds to the absolute level of expression of a transcript. These normalized and modeled signal values for each transcript were used for further high-level bioinformatics analysis. During the calculation of model-based expression signal values, array and probe outliers were interrogated, and images spike were treated as signal outliers. The outlier detection was carried out using dchip outlier detection algorithm. A chip was considered as an outlier if the probe, single, or array outlier percentage exceeded a default threshold of 5%. When comparing two groups of samples to identify genes enriched in a given phenotype, if 90% lower confidence bound (LCB) of the fold change (FC) between the two groups was above 1.2, the corresponding gene was considered to be differentially expressed. LCB is a stringent estimate of FC and has been shown to be the better ranking statistic. It has been suggested that a criterion of selecting genes that have a LCB above 1.2 most likely corresponds to genes with an "actual" fold change of at least 2 in gene expression.

[0118] The raw gene expression data from 62 prostate cancer and 41 normal prostate specimens, published by Lapointe et al. (Proc Natl Acad Sci USA 101: 811-816 (2004)), were obtained from the BRB arrays archived datasets. The preprocessed data was normalized using the Z transformation. The differentially expressed genes were identified on the basis of fold change (>0.5) and Q value<0.05. The analysis identified 510 differentially expressed genes.

[0119] To prioritize the biomarker and immunotherapy targets, we needed to identify genes that are not ubiquitously expressed in all normal tissues. The gene expression data for the various human normal tissues were obtained from Gene Expression Atlas of the Genomics Institute of the Novartis Research Foundation (http://symatlas.gnf.org). Using this database, MAS5 normalized expression data (along with present, absent, and marginal calls for each transcript) were obtained. On the basis of present and absent calls for each transcript, a priority value was calculated. The gene absent in all tissues was given highest priority and the gene present in all tissues was given lowest priority. To further extend the list of genes, we also obtained a list of prostate specific genes by analyzing the Novartis gene expression data (Dhanasekaran et al., Nature 412: 822-826 (2001)). The genes that were annotated as absent on the basis of MAS5 calls in all normal tissues except prostate were considered prostate specific genes.

[0120] The genome-wide gene expression analysis described above identified 1063 genes overexpressed in prostate cancer compared to normal prostate. Examples of the top 100 genes identified in the expression analysis include AMACR, ERG, MMP26, THBS4, and FOXD1. Next, we validated the 1063 putative TAAs by conducting a comprehensive analysis of microarray data from a previously published data set which included 41 normal prostate tissues and 62 neoplastic prostate tissues (Lapointe et al., supra). We looked at the genes that were significantly overexpressed in prostate cancer samples for their potential to be used as biomarkers or targets for immunotherapy. A list of 426 upregulated prostate cancer genes was obtained on the basis of the fold change (>0.5) and FDR value<0.05 after pre-processing and normalizing data (Z transformation). Validation of genes that were overexpressed in prostate cancer in our data set compared to the Stanford prostate cancer array dataset implicated 145 transcripts with concordant over-expression between the array datasets.

[0121] To identify prostate cancer TAAs with the greatest specificity for prostate cancer, we then sought to exclude by in silico analysis those genes detectable in non-prostate normal human adult male tissues. For this purpose, gene expression data for various human tissues were obtained from the two studies conducted by Su et al. (Proc Natl Acad Sci USA 101: 6062-6067 (2004) and Ge et al. (Genomics 86: 127-141 (2005)). Genes that were annotated absent on the basis of MAS5 calls in all the normal tissues except prostate were considered as prostate specific genes. The comprehensive analysis led to the identification of 26 transcripts that are over expressed in prostate cancer samples and are highly tissue restricted (FIG. 1). These transcripts correspond to 23 genes that include ERG and SIM2. The analysis also identified 17 more genes that are present in the prostate cancer samples and absent in normal tissues.

[0122] We then performed quantitative qRT-PCR targeting each of the 23 candidate antigens. 50 ng of high-quality RNA samples (by Agilent>6.0) were reverse transcribed to obtain cDNA, and 1 μl cDNA was used for each well of RT-PCR reactions. Samples were performed in triplicates. SYBR Green PCR Master Mix (Applied Biosystems, Foster City, Calif.) was used for two-step real-time RT-PCR analysis on Applied Biosystems 7900HT Prism instrument. PCR primers for SIM2 and GAPDH were designed as SIM2-F (5'-CTTCCCTCTGGACTCTCACG-3'; SEQ ID NO: 83), SIM2-R (5'-AGGCTGTGCCTAGCAGTGTT-3'; SEQ ID NO: 84), GAPDH-F (5'-TGCACCACCAACTGCTTAGC-3'; SEQ ID NO: 85), and GAPDH-R (5'-GGCATGGACTGTGGTCATGAG-3'; SEQ ID NO: 86). The expression value of SIM2 in a given sample was normalized to the corresponding expression of GAPDH. The 2^-Δ Ct method was used to calculate relative expression of SIM2 (Haram et al., Prostate 68: 1517-1530 (2008) and Livak et al., Methods 25: 402-408 (2001)).

[0123] We confirmed that 15 of the candidate antigens (AMACR, BICD1, C10orf137, CDC2L6, ICA1, KIAA1661, MAP7, MYO6, OR51E2, PAICS, PCSK6, PVT1, RGS 10, SGEF, and SIM2) were overexpressed in prostate cancer (FIG. 2). Frequency of overexpression in prostate cancer for these antigens ranged from 57% to 86%. From among these 15 prostate cancer-specific antigens validated by qRT-PCR, the gene that was most consistently absent in normal prostate and had the highest frequency of expression in prostate cancer (FIG. 2) was the single-minded homolog gene (SIM2). SIM2 was overexpressed in 6 of 7 cancers we tested, but not in benign prostate tissue.

Example 2

ERG as a Target for Immunotherapy of Prostate Cancer

[0124] The selection of target therapeutic antigens is of paramount importance for the design of tumor vaccines (e.g., prostate cancer vaccines). Recent studies have shown that an intrachromosomal rearrangement of the prostate-specific promoter region in the 5' TMPRSS2 gene fusing in-frame with 3' ERG, leading to ERG overexpression, is present in 40-60% of human prostatectomy specimens. ERG is not normally expressed in the human prostate; the expression of ERG has been documented only in cultured endothelium or developing cells, though not detected at abundant levels in normal adult tissue. Moreover, unlike other ETS factors whose expression is maintained in various tissues through adulthood, ERG expression is subject to high tissue restriction.

[0125] In silico analyses of the ERG amino acid sequence using different algorithms that predict MHC class I-restricted epitopes identified over 50 potential binders, of which we selected 12 putative 9-mer peptides predicted to have high affinity binding to human HLA-A2.1. Three of these 9-mer ERG peptides are described by SEQ ID NOs: 2, 3, and 4. All epitopes were from the N-terminus end of the translocation that is not deleted in most TMPRSS2:ERG fusion products, and epitope sequences were 100% homologous to their corresponding mouse orthologs. Next, we screened these peptides for binding to HLA-A2.1 and found eight with significant binding affinity (FIG. 3A). We then hypothesized that T cell tolerance to ERG could be overcome more easily than to other self-antigens because our in silico analyses identified a paucity of ERG expression in normal, human adult tissues in situ (data not shown). Accordingly, we used immunization studies to evaluate if these peptides could break tolerance to ERG, as measured by the induction of ERG epitope-specific, HLA-A2.1-restricted cytotoxic T lymphocytes (CTLs) in humanized HHD mice (i.e., mice with only human HLA-A2.1 class I MHC), and observed the induction of ERG-specific CTLs, as measured by ELISPOT (FIG. 3B).

[0126] In vitro studies have detected anti-ERG autoantibodies in prostate cancer patients. This was achieved by using an alternative approach to gene expression profiling for the purpose of identification of putative target prostate TAAs, mainly the detection of autoantibodies to TAA in serum of prostate cancer patients. We assembled a case-control cohort of 1000 consenting subjects who provided serum, plasma, and buffy coat. This cohort includes 35% prostate cancer cases (primary and metastatic), 55% control cases, and 10% cases with indeterminate or precancerous findings (e.g., atypia, HGPIN, or ASAP). Sera from this cohort were subjected to an initial screen using a high-density nucleic acid programmable protein array (NAPPA) to identify antigens with high incidence of autoantibodies (FIG. 4A). Several candidates were selected from the top 100 antigens resulting from this first screen, including ERG, and the NAPPA data was validated using an ELISA platform. Using this methodology, the presence of anti-ERG autoantibodies in sera from 12% of prostate cancer patients we tested (data for ERG and other TAAs are illustrated in FIG. 4B) was confirmed, providing evidence for the immunogenicity of ERG in prostate cancer patients.

Example 3

SIM2 as a Target for Immunotherapy of Prostate Cancer

[0127] To test whether sera from healthy individuals and prostate cancer patients harbor antibodies to SIM2, we used an ELISA system with in vitro expressed GST-tagged SIM2 for capture. Serum samples were collected at Harvard University and University of Michigan patient accrual sites. Written informed consent was obtained from each patient and approved by the Institutional Review Board of both institutions. All patients were over the age of 40 and were seen at the clinic because of a PSA value exceeding 2.5 ng/ml, abnormal digital rectal exam (DRE), rising PSA, or lower PSA with risk factors such as family history. The study also included men who have had previous biopsies that have not tested positive for cancer. After enrollment and blood collection, all patients received a prostate biopsy to determine the presence or absence of cancer.

[0128] A pCR-BLUNT2-topo plasmid containing human full-length SIM2 cDNA was purchased from Open Biosystems (Huntsville, Ala.). SIM2 cDNA-containing plasmid (10 pg-200 ng) went through two different PCR steps. The first PCR step contained 22.5 μl of AccuPrime Pfx Super Mix (Invitrogen) and 200 nM of each primer. The forward primers for all the genes had a shared sequence at the 5' end (AAAGCAGGCTCCACC; SEQ ID NO: 87), but had a 3' end of 22-25 nucleotides specific to each cDNA. The reverse primers also shared a sequence at the 5' end (AAAGCAGGCTCCACC; SEQ ID NO: 87), but the 3' end (21-27 nucleotides) of each primer was specific to each cDNA. The second PCR step included 22.5 μl of AccuPrime Pfx Super Mix (Invitrogen), 6.6 ml of the PCR product from the first step, and 200 nM of attF and attR primers. The cycling conditions for the two PCR steps were the same, except that the first PCR step was run for 35 cycles while the second PCR step was run for 5 cycles. The extension step was set at 1 minute/kb cDNA. The PCR product was run in a 1% agarose gel, gel purified, and cloned into pDONR plasmid (Invitrogen) to produce entry clones of each cDNA. Entry clones (130 ng) were used to produce expression clones using the pCITE-GST expression vector (130 ng), LR clonase II enzyme mix (2 μl), and TE buffer for a total volume of 10 μl. The reaction product (1 μl) was transformed into 50 μl of One Shot OmniMax® 2T1 Phage-Resistant Cells according to the manufacturer's instructions. All of the TAAs were produced as GST recombinant proteins with GST at the C-terminus. As a negative control for serum antibody binding, a GST control vector was also produced using pDEST15 (Invitrogen) from which only GST would be expressed. The Kozak sequence was introduced into the original pDEST15 5' of GST so that it could be used in the mammalian cell free system.

[0129] This ELISA method is a single-antigen adaptation of the Nucleic Acid-Programmable Protein Array (NAPPA), which utilizes cDNA vectors coupled with a capture antibody and could be advantageous over traditional protein arrays since the proteins do not need to be purified (FIG. 4A). GST-ELISA plates pre-coated with GST were purchased from GE Biosciences. The plates were blocked overnight at 4° C. with PBS, 5% milk, and 0.2% Tween-20. The different TAA-GST recombinant proteins were expressed using the rabbit reticulocyte lysate cell free expression system (Promega) for 1.5 hours at 30° C. in a microcentrifuge tube according to the manufacturer's instructions. The expressed proteins were transferred to the ELISA plate and bound overnight at 4° C. The plates were washed, incubated with serum diluted 1:300 in blocking buffer for 1 hour, and then incubated for 1 hour with horseradish peroxidase linked antihuman antibodies. After washing, 100 μl of the substrate (SuperSignal ELISA Femto Maximum Sensitivity Substrate; Pierce) were added to each well, and the luminescence signal was read using Victor3 ELISA reader (no filter). Each serum was screened in duplicate. The plate also included a secondary antibody negative control and a GST control.

[0130] Significant levels of autoantibody from patient sera with specific binding to SIM2 (P<0.01) were detected in two of the five evaluated prostate cancer samples (FIG. 5). In contrast, autoantibodies to SIM2 were not detectable in any of the nine control patients' sera (FIG. 5).

Example 4

Humanized Mouse Models as a Tool for ERG- and SIM2-Targeted Prostate Cancer Immunotherapy

[0131] To test ERG-target immunotherapeutic protocols, the HHD mouse (HLA-A*0201 transgenic mouse), the Pb-ERG mouse (probasin-ERG transgenic mouse), and the Pb-ERG/Pten.sup.+/- mouse are used. The HHD mouse expresses human HLA-A2.1, but lacks murine MHC I. The Pb-ERG transgenic mouse exhibits prostate-restricted ERG expression and develops mouse prostatic intraepithelial neoplasia (mPIN), a precursor lesion of prostate cancer, by 12 to 14 weeks of age. The Pb-ERG/Pten.sup.+/- mice showed that the combination of overexpressed ERG and reduced Pten levels are causative of multifocal prostatic adenocarcinoma with complete penetrance by 6 months of age.

[0132] Xenograft models are also used in the CTL adoptive transfer phase of ERG-based immunotherapy, as they provide a fast system for the titration and evaluation of anti-tumor effects. This model is developed using the HLA-A2.1 (+) human LNCap cell line, stably expressing human ERG. A similar strategy is adopted for TAAs other than ERG in case of unavailability of transgenic mice.

[0133] For SIM2-targeted immunotherapy, the TRAMP-HHD hybrid mouse is used. The TRAMP mouse is a well-characterized model of prostate cancer, and we have previously utilized it as a model in several studies pertaining to prostate cancer genomics and immunity. Moreover, microarray data showed elevated levels of SIM2 in TRAMP prostate tumors.

Example 5

Characterization of Human HLA-A2.1-Restricted Epitopes of ERG that are Suitable Targets for Immunotherapy Mediated by A2.1-Resticted CTL

[0134] The impact of developing prostate cancer on ERG-specific CTL tolerance by comparing ERG-specific CTL responsiveness in (age-matched) HHD mice to that of F1 Pb-ERG-HHD or Pb-ERG/PTEN.sup.+/--HHD hybrid mice before and after prostate neoplastic transformation develops is determined. Owing to the striking homology between mouse and human ERG genes, the amino acid sequences of the three epitopes we identified are 100% homologous to the murine ERG epitopes.

[0135] In preliminary data, three immunodominant epitopes of human ERG presented by human HLA-A2.1 that can break ERG-specific T cell tolerance after immunization were identified, as evidenced by induction of ERG-specific, A2.1-restricted cytotoxic T lymphocytes in humanized mice. We compare the anti-tumor efficacy of immune responses induced against each of these three immunodominant human ERG epitopes and determine whether T cell tolerance to ERG is further attenuated via androgen suppression or by inhibition of suppressive CD4/CD25 regulatory T cells by Tim-1 targeting. These preclinical studies are conducted using F1 hybrid progeny of humanized HHD mice bred with Pb-ERG mice and the PB-ERG/Pten.sup.+/- mouse. These models are mutually complementary as follows: the Pb-ERG transgenic mouse exhibits prostate-restricted ERG expression and, despite not developing progressive cancers, these mice allow the study of how to best exploit androgen modulation to facilitate ERG-specific T cell responses. In contrast, the PB-ERG/Pten.sup.+/- mouse represents multifocal prostatic adenocarcinoma with complete penetrance by six months of age and allows us to determine which of the three immunodominant ERG epitopes shows the best ability to eradicate prostate cancer in vivo.

[0136] Direct comparison of the 3 dominant epitopes' ability to eliminate ERG-induced prostate cancer is performed by passive immunization and by active immunization. We and others have previously shown that adoptive transfer of CTL specific for a model prostatic oncogene (e.g., SV40Tag in TRAMP mice) can effectively treat established prostate cancers. This experiment is performed by adoptive transfer of human A2.1-restricted, ERG-specific CTL in our PB-ERG/Pten.sup.+/- xHHD mice. Efficacy of CTL against the three immunodominant human A2.1-restricted peptides of ERG is compared. The most effective epitope is selected for phase I clinical trial IND. Active immunization studies are performed to explore avenues for optimizing in situ anti-tumor responsiveness in the absence of adoptive transfer in preclinical hybrid, humanized ERG/A2.1 transgenic models. Our active immunization studies focus on exploiting androgen suppression or targeting regulatory T lymphocytes (Tregs) to attenuate ERG tolerance and improve anti-tumor efficacy in vivo. In all immunization modalities, a CTL response to a given peptide antigen is defined by the ability of splenocytes from a peptide-immunized mouse to secrete IFN-γ (measured by ELISPOT), produce granzyme B and perform, lyse peptide-loaded HLA-A2.1-expressing cells in a cytotoxicity assay, and specifically bind peptide-tetramer complexes. Anti-tumor effects are monitored by histology (for Pb-ERG mice) and prostate tumor size (for PB-ERG/Pten.sup.+/- mice).

Example 6

Identification and Characterization of Human HLA-A2.1-Restricted SIM2 Epitopes that are Suitable Targets for Immunotherapy Mediated by A2.1-Resticted CTL

[0137] In our comprehensive analysis of microarray data from normal (41 samples) and neoplastic (62 samples) prostate tissues, we looked at the genes that are significantly overexpressed in prostate cancer for their potential to be used as biomarkers or targets for immunotherapy. A list of 343 unique prostate cancer upregulated genes was obtained on the basis of the fold change (>0.5) and FDR value<0.05 after pre-processing and normalizing data (Z transformation). For the purpose of this study, only those genes whose expression was completely absent in non-prostate normal human tissues were retained for further consideration. Gene expression data for various human tissues were obtained from the two studies conducted by Novartis and Stanford. MAS5 normalized expression data along with present, absent, and marginal calls for each transcript were obtained. Based on present and absent calls for each transcript, a priority value was calculated. Genes that were absent in all tissues were given highest priority. To further extend the list of genes, prostate specific genes were identified by analyzing the Stanford gene expression data. The genes that were annotated absent on the basis of MAS5 calls in all the normal tissues except prostate were considered as prostate specific genes. This comprehensive multi-step analysis led to a list of 57 genes, which included ERG. We selected the transcription factor SIM2 as our second target for its overexpression in most prostate cancer biopsies that were analyzed (FIG. 6) and for the absence of expression in normal tissues. Concurrent overexpression of ERG and SIM2 was observed only in a fraction of the prostate cancer biopsies we analyzed.

[0138] To predict potential HLA-A*0201-binding epitopes, candidate target TAA protein sequences are screened against various matrix patterns, which evaluate every amino acid within octomer, nonamer or decamer peptides fitting the HLA-A*0201 motif. In addition to the widely used algorithms SYFPEITHI, BIMAS, MHCPred, and RankPep, we also utilized NetCTL, PREDEP, ProPred-I, MAPPP, JenPep, NetMHC, and nHLApred for the purpose of our predictions.

[0139] Epitope candidates were evaluated for binding to HLA-A2.1 using an MHC stabilization assay. The assay is based on the ability of suitable peptides to stabilize MHC class I molecules from the T2 cell line. T2 cells lack a functional transporter associated with antigen presentation (TAP) and as a result accumulate empty, unstable class I molecules on the cell surface. These molecules on the cell surface dissociate rapidly unless they are stabilized by the addition of an appropriate binding peptide. In this assay, the flu Ml HLA-A*0201-binding peptide was used as a reference.

[0140] Briefly, T2 cells were cultured for 6 hours in serum-free IMDM (ATCC) prior to the addition of candidate peptides at a concentration of 50 μg/250×10³ cells/ml and incubated overnight at 37° C. Cells were washed, and surface HLA-A2.1 molecules were stained with FITC mouse anti-human HLA-A2 mAb (clone BB7.2, Mouse IgG2b κ, BD Pharmingen) for 1 hour at 4° C. Cells were then washed three times with PBS and analyzed by flow cytometry. A negative control peptide (NEG, see FIG. 6A) and the flu matrix peptide M1 binder peptide (M1, see FIG. 6A) served as controls. The relative binding affinity of a given peptide was calculated as MFI.sub.(peptide)/MFI.sub.(negative peptide). Only relative binding affinities of 1.5 or higher were considered for further testing.

[0141] T2 cells were incubated overnight with 50 μg/ml of each candidate peptide at 37° C. in serum-free Iscove's Modified Dulbecco's Medium (IMDM). Cells were then incubated with Brefeldin A (Sigma, St. Louis, Mo.) at 10 μg/ml for 1 hour, washed, and incubated at 37° C. for 0, 2, 4 or 6 hours in the presence of Brefeldin A (50 ng/ml). Cells were then stained with BB7.2 mAb. For each time point, peptide-induced HLA-A2.1 expression was calculated as the difference of the mean fluorescence of peptide-loaded T2 cells and mean fluorescence of negative peptide-loaded T2 cells. The rate of dissociation is reflected by the loss of A2.1 expression over time.

[0142] This MHC stabilization assay revealed nine SIM2 peptides that were able to stabilize HLA-A2.1 molecules, resulting in increased detection of surface A2.1 molecules with a specific monoclonal antibody (FIG. 6A). The peptide-HLA dissociation rate correlated with time and identified weak stabilizing epitopes (epitopes 84, 199, 237 and 430) and strong stabilizing epitopes (epitopes 87, 205, 241 and 244). However, epitopes with a high dissociation rate (weak stabilizers) still showed a slight binding that was above the non-binding control epitope, even after 8 hours of incubation.

[0143] These nine SIM2 peptides were then tested for their capacity to elicit in vivo CTL responses in transgenic HHD mice. Ten to 12-week old male HHD mice were injected subcutaneously at the basis of the tail with 100 μg of each candidate peptide emulsified in 50 μl of Incomplete Freund's Adjuvant (IFA) and 50 μl PBS in the presence of 150 μg of the I-A^b restricted HBVcore_128-140 T helper epitope (TPPAYRPPNAPIL SEQ ID NO: 88). Ten to twelve days post-immunization, spleens were harvested and splenocytes tested for peptide-induced specific release of IFN-γ by ELISPOT. To perform the ELISPOT assays, 96-well Millipore IP plates were coated with 100 μl/well mouse IFN-γ specific capture mAb (AN18, Mabtech Inc., Mariemont, Ohio) at a concentration of 10 μg/ml in PBS overnight at 4° C. Wells were washed with PBS and saturated with RPMI/10% FCS for 1 hour at 37° C. A total of 2.5×10⁵ splenocytes were seeded in each well in four replicates and 5×10⁴ peptide-loaded (10 μg peptide/ml, for 2 hours at 37° C.) splenocytes pretreated with 50 μg/ml Mitomycin C for 1 hour were added to each well. Plates were incubated for 1-2 days at 37° C. in 5% CO₂, washed 5 times with PBS, and then incubated with 1 μg/ml of biotinylated rat anti-mouse IFN-γ mAb (R4-6A2, Mabtech Inc.) for 24 hours at 4° C. or at room temperature for 2 hours. The wells were washed, and incubated with 100 μl of diluted alkaline phosphatase-conjugated streptavidin for 1 hour at room temperature. Spots were developed by adding peroxidase substrates (5-bromo-4,3-indolyl phosphate and nitroblue tetrazolium) and counted using the ELR04 AID ELISPOT Reader System (Autoimmun Diagnostika GmbH, Straβberg, Germany).

[0144] We found that in vitro restimulation with SIM2(87) (TLDGFVFVV; SEQ ID NO: 6), SIM2(205) (YQIVGLVAV; SEQ ID NO: 7), SIM2(237) (SLDLKLIFL; SEQ ID NO: 8), SIM2(241) (KLIFLDSRV; SEQ ID NO: 9), and SIM2 (244) (FLDSRVTEV; SEQ ID NO: 10) induced significantly (P<0.01 for SIM2(87) and P<0.001 for other epitopes) higher numbers of splenocytes to release IFN-γ in a peptide-specific manner in an ELISPOT assay (FIG. 6B). This provides evidence that tolerance to SIM2 is circumvented through immunization of mice to these epitopes since SIM2 (and SIM1) is also expressed in other non-prostatic tissues in mice. SIM2(25) and SIM2(199) were not immunogenic, despite their ability to bind tightly to A2.1.

[0145] The potential for human HLA-A2.1-restricted, SIM2-specific immunity to impact developing prostate cancers in vivo will be evaluated in the TRAMP-HHD hybrid mouse. The TRAMP mouse is a well-characterized model of prostate cancer and we have previously utilized it as a model in several studies pertaining to prostate cancer genomics and immunity. In a genome-wide analysis, we have recently shown that SIM2 gene is overexpressed in TRAMP prostate tumors. We additionally have shown that SIM2 expression in LNCap cells is regulated by androgens, which offers the possibility of combining androgen manipulation with SIM2-targeted immunotherapy in this model.

Example 7

Exploitation of Androgen Ablation for Overcoming Prostate TAA-Specific Immune Tolerance

[0146] The androgen-signaling pathway is critical to the development and progression of prostate cancer. Androgen ablation is a conventional therapy for prostate cancer and believed by many to enhance immunity to tumor antigens when combined to immunotherapy. It has been shown that androgen ablation in mice attenuates tolerance and raises CD4 T cell responses to flu peptide as a model prostate tumor antigen. Our studies have extended this observation to A2.1-restricted CTL responses against PSA in probasin-PSA transgenic mice. For example, hybrid A2.1/PSA (males, castrated males, or females) transgenic and A2.1 mice were immunized with vac-prostate specific antigen (PSA), and splenocytes were restimulated with PSA protein-loaded dendritic cells and tested by ELISPOT (FIG. 7A) or PSA-tetramers (FIG. 7B), showing that androgen suppression attenuates prostate-specific tolerance. Additionally, androgen ablative therapy in men has been shown to result in enhanced T cell infiltration into benign and malignant prostate tissue. We now exploit androgen responsiveness of TMPRSS2-ERG fusion and SIM2 gene (FIG. 8) to attenuate ERG- and SIM2-specific immune tolerance.

[0147] Our preliminary data (FIG. 8A) are consistent with the well-established positive correlation of ERG expression with androgen. We assess the effect of castration on the outcome of active immunization comparing the three immunodominant ERG peptides for their ability to induce ERG-specific CTL in Pb-ERG-HHD and to reduce tumor growth in PB-ERG/Pten.sup.+/--HHD mice.

[0148] Like ERG, SIM2 expression is dependent on androgens (FIG. 8B), likely due to the location of SIM2 gene in a region rich in androgen regulatory elements on chromosome 21. Our microarray data revealed increased expression of SIM2 expression in prostate tumors from TRAMP mice. The effect of androgen ablation on immune tolerance to SIM2 and on prostate tumor growth by castration of male TRAMP-HHD hybrid mice is tested, followed by active immunization with immunogenic A2.1-restricted SIM2 peptides.

Example 8

Manipulation of the T Cell Immunoglobulin-Mucin-1 (Tim-1) Pathway for Overcoming Prostate TAA-Specific Immune Tolerance

[0149] Regulatory T lymphocytes (Tregs) severely impede anti-tumor immune responses in various cancers. To investigate the ability of stimulating T cells through the Tim-1 receptor to interfere with the rise of Treg cells and the onset of immune tolerance to TAA, we crossed the TRAMP mouse with GFP-Foxp3-KI mouse. We found that naive CD4 T and CD8 T cells from the prostate-draining lymph nodes of TRAMP-GFP-Foxp3 hybrid mice exhibit an increased rate of conversion to Treg cells after treatment with anti-CD3/CD28+TGF-β (FIGS. 9A and 9B). This elevated susceptibility to TGF-β-induced differentiation is enhanced in aged mice. This novel observation might explain why prostate cancer development parallels an increase in Treg in both tumors and peripheral blood. Depletion of Tregs prior to the administration of cancer vaccines strengthens tumor immunity in non-prostate models. T cell immunoglobulin-mucin-1 (Tim-1) stimulation with an agonistic anti-Tim 1 antibody (Ab), a Tim 4-Ig fusion protein or activation by Tim-4.sup.+ DCs is able to polarize T cells into a TH1 and TH17 dominant phenotypes and subvert tolerance and Tregs. We first tested the ability of the anti-Tim-1 Ab by immunizing B6 mice with a recombinant, Tag-expressing vaccinia and providing different doses of the Ab at the time of immunization. We have found that agonist anti-Tim-1 Ab induced a significant increase in Tag-specific CTL as judged by Tag-tetramer specificity and IFN-γ production by CD8 cells (FIGS. 9C and 9D). This finding is consistent with a previous report where an agonist anti-Tim-1 antibody enhanced antigen-specific cellular proliferation and IFN-γ production in mice immunized with inactivated influenza virus. We then sought to assess the CTL enhancing ability of the Ab in adult TRAMP-GFP-Foxp3 mice using the same strategy. Similarly, Ab treatment resulted in elevated Tag-specific CTL in both spleen and prostate-draining lymph nodes (FIG. 10). Together, our findings support our hypothesis that interference with the Tim-1/Tim-4 interaction by antibodies or fusion proteins will enhance responsiveness to active immunization with ERG or SIM2. The effect of Tim-1 manipulation in various mouse models of prostate cancer is tested by administering the agonist anti-Tim-1 monoclonal antibody concomitantly with antigen under an active and passive immunotherapy regimen and also in combination with androgen ablation.

Other Embodiments

[0150] From the foregoing description, it will be apparent that variations and modifications may be made to the invention described herein to adopt it to various usages and conditions. Such embodiments are also within the scope of the following claims.

[0151] All publications, patent applications, and patents mentioned in this specification are herein incorporated by reference to the same extent as if each independent publication, patent application, or patent was specifically and individually indicated to be incorporated by reference.

[0152] From the foregoing description, one skilled in the art can easily ascertain the essential characteristics of this invention; can make various changes and modifications of the invention to adapt it to various usages and conditions. Thus, other embodiments are also within the claims.

Sequence CWU 1

1

881486PRTHomo sapiens 1Met Ile Gln Thr Val Pro Asp Pro Ala Ala His Ile Lys Glu Ala Leu 1 5 10 15 Ser Val Val Ser Glu Asp Gln Ser Leu Phe Glu Cys Ala Tyr Gly Thr 20 25 30 Pro His Leu Ala Lys Thr Glu Met Thr Ala Ser Ser Ser Ser Asp Tyr 35 40 45 Gly Gln Thr Ser Lys Met Ser Pro Arg Val Pro Gln Gln Asp Trp Leu 50 55 60 Ser Gln Pro Pro Ala Arg Val Thr Ile Lys Met Glu Cys Asn Pro Ser 65 70 75 80 Gln Val Asn Gly Ser Arg Asn Ser Pro Asp Glu Cys Ser Val Ala Lys 85 90 95 Gly Gly Lys Met Val Gly Ser Pro Asp Thr Val Gly Met Asn Tyr Gly 100 105 110 Ser Tyr Met Glu Glu Lys His Met Pro Pro Pro Asn Met Thr Thr Asn 115 120 125 Glu Arg Arg Val Ile Val Pro Ala Asp Pro Thr Leu Trp Ser Thr Asp 130 135 140 His Val Arg Gln Trp Leu Glu Trp Ala Val Lys Glu Tyr Gly Leu Pro 145 150 155 160 Asp Val Asn Ile Leu Leu Phe Gln Asn Ile Asp Gly Lys Glu Leu Cys 165 170 175 Lys Met Thr Lys Asp Asp Phe Gln Arg Leu Thr Pro Ser Tyr Asn Ala 180 185 190 Asp Ile Leu Leu Ser His Leu His Tyr Leu Arg Glu Thr Pro Leu Pro 195 200 205 His Leu Thr Ser Asp Asp Val Asp Lys Ala Leu Gln Asn Ser Pro Arg 210 215 220 Leu Met His Ala Arg Asn Thr Gly Gly Ala Ala Phe Ile Phe Pro Asn 225 230 235 240 Thr Ser Val Tyr Pro Glu Ala Thr Gln Arg Ile Thr Thr Arg Pro Asp 245 250 255 Leu Pro Tyr Glu Pro Pro Arg Arg Ser Ala Trp Thr Gly His Gly His 260 265 270 Pro Thr Pro Gln Ser Lys Ala Ala Gln Pro Ser Pro Ser Thr Val Pro 275 280 285 Lys Thr Glu Asp Gln Arg Pro Gln Leu Asp Pro Tyr Gln Ile Leu Gly 290 295 300 Pro Thr Ser Ser Arg Leu Ala Asn Pro Gly Ser Gly Gln Ile Gln Leu 305 310 315 320 Trp Gln Phe Leu Leu Glu Leu Leu Ser Asp Ser Ser Asn Ser Ser Cys 325 330 335 Ile Thr Trp Glu Gly Thr Asn Gly Glu Phe Lys Met Thr Asp Pro Asp 340 345 350 Glu Val Ala Arg Arg Trp Gly Glu Arg Lys Ser Lys Pro Asn Met Asn 355 360 365 Tyr Asp Lys Leu Ser Arg Ala Leu Arg Tyr Tyr Tyr Asp Lys Asn Ile 370 375 380 Met Thr Lys Val His Gly Lys Arg Tyr Ala Tyr Lys Phe Asp Phe His 385 390 395 400 Gly Ile Ala Gln Ala Leu Gln Pro His Pro Pro Glu Ser Ser Leu Tyr 405 410 415 Lys Tyr Pro Ser Asp Leu Pro Tyr Met Gly Ser Tyr His Ala His Pro 420 425 430 Gln Lys Met Asn Phe Val Ala Pro His Pro Pro Ala Leu Pro Val Thr 435 440 445 Ser Ser Ser Phe Phe Ala Ala Pro Asn Pro Tyr Trp Asn Ser Pro Thr 450 455 460 Gly Gly Ile Tyr Pro Asn Thr Arg Leu Pro Thr Ser His Met Pro Ser 465 470 475 480 His Leu Gly Thr Tyr Tyr 485 29PRTHomo sapiens 2Gly Leu Pro Asp Val Asn Ile Leu Leu 1 5 39PRTHomo sapiens 3Gln Leu Trp Gln Phe Leu Leu Glu Leu 1 5 49PRTHomo sapiens 4Phe Val Ala Pro His Pro Pro Ala Leu 1 5 5667PRTHomo sapiens 5Met Lys Glu Lys Ser Lys Asn Ala Ala Lys Thr Arg Arg Glu Lys Glu 1 5 10 15 Asn Gly Glu Phe Tyr Glu Leu Ala Lys Leu Leu Pro Leu Pro Ser Ala 20 25 30 Ile Thr Ser Gln Leu Asp Lys Ala Ser Ile Ile Arg Leu Thr Thr Ser 35 40 45 Tyr Leu Lys Met Arg Ala Val Phe Pro Glu Gly Leu Gly Asp Ala Trp 50 55 60 Gly Gln Pro Ser Arg Ala Gly Pro Leu Asp Gly Val Ala Lys Glu Leu 65 70 75 80 Gly Ser His Leu Leu Gln Thr Leu Asp Gly Phe Val Phe Val Val Ala 85 90 95 Ser Asp Gly Lys Ile Met Tyr Ile Ser Glu Thr Ala Ser Val His Leu 100 105 110 Gly Leu Ser Gln Val Glu Leu Thr Gly Asn Ser Ile Tyr Glu Tyr Ile 115 120 125 His Pro Ser Asp His Asp Glu Met Thr Ala Val Leu Thr Ala His Gln 130 135 140 Pro Leu His His His Leu Leu Gln Glu Tyr Glu Ile Glu Arg Ser Phe 145 150 155 160 Phe Leu Arg Met Lys Cys Val Leu Ala Lys Arg Asn Ala Gly Leu Thr 165 170 175 Cys Ser Gly Tyr Lys Val Ile His Cys Ser Gly Tyr Leu Lys Ile Arg 180 185 190 Gln Tyr Met Leu Asp Met Ser Leu Tyr Asp Ser Cys Tyr Gln Ile Val 195 200 205 Gly Leu Val Ala Val Gly Gln Ser Leu Pro Pro Ser Ala Ile Thr Glu 210 215 220 Ile Lys Leu Tyr Ser Asn Met Phe Met Phe Arg Ala Ser Leu Asp Leu 225 230 235 240 Lys Leu Ile Phe Leu Asp Ser Arg Val Thr Glu Val Thr Gly Tyr Glu 245 250 255 Pro Gln Asp Leu Ile Glu Lys Thr Leu Tyr His His Val His Gly Cys 260 265 270 Asp Val Phe His Leu Arg Tyr Ala His His Leu Leu Leu Val Lys Gly 275 280 285 Gln Val Thr Thr Lys Tyr Tyr Arg Leu Leu Ser Lys Arg Gly Gly Trp 290 295 300 Val Trp Val Gln Ser Tyr Ala Thr Val Val His Asn Ser Arg Ser Ser 305 310 315 320 Arg Pro His Cys Ile Val Ser Val Asn Tyr Val Leu Thr Glu Ile Glu 325 330 335 Tyr Lys Glu Leu Gln Leu Ser Leu Glu Gln Val Ser Thr Ala Lys Ser 340 345 350 Gln Asp Ser Trp Arg Thr Ala Leu Ser Thr Ser Gln Glu Thr Arg Lys 355 360 365 Leu Val Lys Pro Lys Asn Thr Lys Met Lys Thr Lys Leu Arg Thr Asn 370 375 380 Pro Tyr Pro Pro Gln Gln Tyr Ser Ser Phe Gln Met Asp Lys Leu Glu 385 390 395 400 Cys Gly Gln Leu Gly Asn Trp Arg Ala Ser Pro Pro Ala Ser Ala Ala 405 410 415 Ala Pro Pro Glu Leu Gln Pro His Ser Glu Ser Ser Asp Leu Leu Tyr 420 425 430 Thr Pro Ser Tyr Ser Leu Pro Phe Ser Tyr His Tyr Gly His Phe Pro 435 440 445 Leu Asp Ser His Val Phe Ser Ser Lys Lys Pro Met Leu Pro Ala Lys 450 455 460 Phe Gly Gln Pro Gln Gly Ser Pro Cys Glu Val Ala Arg Phe Phe Leu 465 470 475 480 Ser Thr Leu Pro Ala Ser Gly Glu Cys Gln Trp His Tyr Ala Asn Pro 485 490 495 Leu Val Pro Ser Ser Ser Ser Pro Ala Lys Asn Pro Pro Glu Pro Pro 500 505 510 Ala Asn Thr Ala Arg His Ser Leu Val Pro Ser Tyr Glu Ala Pro Ala 515 520 525 Ala Ala Val Arg Arg Phe Gly Glu Asp Thr Ala Pro Pro Ser Phe Pro 530 535 540 Ser Cys Gly His Tyr Arg Glu Glu Pro Ala Leu Gly Pro Ala Lys Ala 545 550 555 560 Ala Arg Gln Ala Ala Arg Asp Gly Ala Arg Leu Ala Leu Ala Arg Ala 565 570 575 Ala Pro Glu Cys Cys Ala Pro Pro Thr Pro Glu Ala Pro Gly Ala Pro 580 585 590 Ala Gln Leu Pro Phe Val Leu Leu Asn Tyr His Arg Val Leu Ala Arg 595 600 605 Arg Gly Pro Leu Gly Gly Ala Ala Pro Ala Ala Ser Gly Leu Ala Cys 610 615 620 Ala Pro Gly Gly Pro Glu Ala Ala Thr Gly Ala Leu Arg Leu Arg His 625 630 635 640 Pro Ser Pro Ala Ala Thr Ser Pro Pro Gly Ala Pro Leu Pro His Tyr 645 650 655 Leu Gly Ala Ser Val Ile Ile Thr Asn Gly Arg 660 665 69PRTHomo sapiens 6Thr Leu Asp Gly Phe Val Phe Val Val 1 5 79PRTHomo sapiens 7Tyr Gln Ile Val Gly Leu Val Ala Val 1 5 89PRTHomo sapiens 8Ser Leu Asp Leu Lys Leu Ile Phe Leu 1 5 99PRTHomo sapiens 9Lys Leu Ile Phe Leu Asp Ser Arg Val 1 5 109PRTHomo sapiens 10Phe Leu Asp Ser Arg Val Thr Glu Val 1 5 11382PRTHomo sapiens 11Met Ala Leu Gln Gly Ile Ser Val Val Glu Leu Ser Gly Leu Ala Pro 1 5 10 15 Gly Pro Phe Cys Ala Met Val Leu Ala Asp Phe Gly Ala Arg Val Val 20 25 30 Arg Val Asp Arg Pro Gly Ser Arg Tyr Asp Val Ser Arg Leu Gly Arg 35 40 45 Gly Lys Arg Ser Leu Val Leu Asp Leu Lys Gln Pro Arg Gly Ala Ala 50 55 60 Val Leu Arg Arg Leu Cys Lys Arg Ser Asp Val Leu Leu Glu Pro Phe 65 70 75 80 Arg Arg Gly Val Met Glu Lys Leu Gln Leu Gly Pro Glu Ile Leu Gln 85 90 95 Arg Glu Asn Pro Arg Leu Ile Tyr Ala Arg Leu Ser Gly Phe Gly Gln 100 105 110 Ser Gly Ser Phe Cys Arg Leu Ala Gly His Asp Ile Asn Tyr Leu Ala 115 120 125 Leu Ser Gly Val Leu Ser Lys Ile Gly Arg Ser Gly Glu Asn Pro Tyr 130 135 140 Ala Pro Leu Asn Leu Leu Ala Asp Phe Ala Gly Gly Gly Leu Met Cys 145 150 155 160 Ala Leu Gly Ile Ile Met Ala Leu Phe Asp Arg Thr Arg Thr Gly Lys 165 170 175 Gly Gln Val Ile Asp Ala Asn Met Val Glu Gly Thr Ala Tyr Leu Ser 180 185 190 Ser Phe Leu Trp Lys Thr Gln Lys Leu Ser Leu Trp Glu Ala Pro Arg 195 200 205 Gly Gln Asn Met Leu Asp Gly Gly Ala Pro Phe Tyr Thr Thr Tyr Arg 210 215 220 Thr Ala Asp Gly Glu Phe Met Ala Val Gly Ala Ile Glu Pro Gln Phe 225 230 235 240 Tyr Glu Leu Leu Ile Lys Gly Leu Gly Leu Lys Ser Asp Glu Leu Pro 245 250 255 Asn Gln Met Ser Met Asp Asp Trp Pro Glu Met Lys Lys Lys Phe Ala 260 265 270 Asp Val Phe Ala Glu Lys Thr Lys Ala Glu Trp Cys Gln Ile Phe Asp 275 280 285 Gly Thr Asp Ala Cys Val Thr Pro Val Leu Thr Phe Glu Glu Val Val 290 295 300 His His Asp His Asn Lys Glu Arg Gly Ser Phe Ile Thr Ser Glu Glu 305 310 315 320 Gln Asp Val Ser Pro Arg Pro Ala Pro Leu Leu Leu Asn Thr Pro Ala 325 330 335 Ile Pro Ser Phe Lys Arg Asp Pro Phe Ile Gly Glu His Thr Glu Glu 340 345 350 Ile Leu Glu Glu Phe Gly Phe Ser Arg Glu Glu Ile Tyr Gln Leu Asn 355 360 365 Ser Asp Lys Ile Ile Glu Ser Asn Lys Val Lys Ala Ser Leu 370 375 380 12975PRTHomo sapiens 12Met Ala Ala Glu Glu Val Leu Gln Thr Val Asp His Tyr Lys Thr Glu 1 5 10 15 Ile Glu Arg Leu Thr Lys Glu Leu Thr Glu Thr Thr His Glu Lys Ile 20 25 30 Gln Ala Ala Glu Tyr Gly Leu Val Val Leu Glu Glu Lys Leu Thr Leu 35 40 45 Lys Gln Gln Tyr Asp Glu Leu Glu Ala Glu Tyr Asp Ser Leu Lys Gln 50 55 60 Glu Leu Glu Gln Leu Lys Glu Ala Phe Gly Gln Ser Phe Ser Ile His 65 70 75 80 Arg Lys Val Ala Glu Asp Gly Glu Thr Arg Glu Glu Thr Leu Leu Gln 85 90 95 Glu Ser Ala Ser Lys Glu Ala Tyr Tyr Leu Gly Lys Ile Leu Glu Met 100 105 110 Gln Asn Glu Leu Lys Gln Ser Arg Ala Val Val Thr Asn Val Gln Ala 115 120 125 Glu Asn Glu Arg Leu Thr Ala Val Val Gln Asp Leu Lys Glu Asn Asn 130 135 140 Glu Met Val Glu Leu Gln Arg Ile Arg Met Lys Asp Glu Ile Arg Glu 145 150 155 160 Tyr Lys Phe Arg Glu Ala Arg Leu Leu Gln Asp Tyr Thr Glu Leu Glu 165 170 175 Glu Glu Asn Ile Thr Leu Gln Lys Leu Val Ser Thr Leu Lys Gln Asn 180 185 190 Gln Val Glu Tyr Glu Gly Leu Lys His Glu Ile Lys Arg Phe Glu Glu 195 200 205 Glu Thr Val Leu Leu Asn Ser Gln Leu Glu Asp Ala Ile Arg Leu Lys 210 215 220 Glu Ile Ala Glu His Gln Leu Glu Glu Ala Leu Glu Thr Leu Lys Asn 225 230 235 240 Glu Arg Glu Gln Lys Asn Asn Leu Arg Lys Glu Leu Ser Gln Tyr Ile 245 250 255 Ser Leu Asn Asp Asn His Ile Ser Ile Ser Val Asp Gly Leu Lys Phe 260 265 270 Ala Glu Asp Gly Ser Glu Pro Asn Asn Asp Asp Lys Met Asn Gly His 275 280 285 Ile His Gly Pro Leu Val Lys Leu Asn Gly Asp Tyr Arg Thr Pro Thr 290 295 300 Leu Arg Lys Gly Glu Ser Leu Asn Pro Val Ser Asp Leu Phe Ser Glu 305 310 315 320 Leu Asn Ile Ser Glu Ile Gln Lys Leu Lys Gln Gln Leu Met Gln Val 325 330 335 Glu Arg Glu Lys Ala Ile Leu Leu Ala Asn Leu Gln Glu Ser Gln Thr 340 345 350 Gln Leu Glu His Thr Lys Gly Ala Leu Thr Glu Gln His Glu Arg Val 355 360 365 His Arg Leu Thr Glu His Val Asn Ala Met Arg Gly Leu Gln Ser Ser 370 375 380 Lys Glu Leu Lys Ala Glu Leu Asp Gly Glu Lys Gly Arg Asp Ser Gly 385 390 395 400 Glu Glu Ala His Asp Tyr Glu Val Asp Ile Asn Gly Leu Glu Ile Leu 405 410 415 Glu Cys Lys Tyr Arg Val Ala Val Thr Glu Val Ile Asp Leu Lys Ala 420 425 430 Glu Ile Lys Ala Leu Lys Glu Lys Tyr Asn Lys Ser Val Glu Asn Tyr 435 440 445 Thr Asp Glu Lys Ala Lys Tyr Glu Ser Lys Ile Gln Met Tyr Asp Glu 450 455 460 Gln Val Thr Ser Leu Glu Lys Thr Thr Lys Glu Ser Gly Glu Lys Met 465 470 475 480 Ala His Met Glu Lys Glu Leu Gln Lys Met Thr Ser Ile Ala Asn Glu 485 490 495 Asn His Ser Thr Leu Asn Thr Ala Gln Asp Glu Leu Val Thr Phe Ser 500 505 510 Glu Glu Leu Ala Gln Leu Tyr His His Val Cys Leu Cys Asn Asn Glu 515 520 525 Thr Pro Asn Arg Val Met Leu Asp Tyr Tyr Arg Gln Ser Arg Val Thr 530 535 540 Arg Ser Gly Ser Leu Lys Gly Pro Asp Asp Pro Arg Gly Leu Leu Ser 545 550 555 560 Pro Arg Leu Ala Arg Arg Gly Val Ser Ser Pro Val Glu Thr Arg Thr 565 570 575 Ser Ser Glu Pro Val Ala Lys Glu Ser Thr Glu Ala Ser Lys Glu Pro 580 585 590 Ser Pro Thr Lys Thr Pro Thr Ile Ser Pro Val Ile Thr Ala Pro Pro 595 600 605 Ser Ser Pro Val Leu Asp Thr Ser Asp Ile Arg Lys Glu Pro Met Asn 610 615 620 Ile Tyr Asn Leu Asn Ala Ile Ile Arg Asp Gln Ile Lys His Leu Gln 625 630 635 640 Lys Ala Val Asp Arg Ser Leu Gln Leu Ser Arg Gln Arg Ala Ala Ala 645 650 655 Arg Glu Leu Ala Pro Met Ile Asp Lys Asp Lys Glu Ala Leu Met Glu 660 665

670 Glu Ile Leu Lys Leu Lys Ser Leu Leu Ser Thr Lys Arg Glu Gln Ile 675 680 685 Ala Thr Leu Arg Ala Val Leu Lys Ala Asn Lys Gln Thr Ala Glu Val 690 695 700 Ala Leu Ala Asn Leu Lys Asn Lys Tyr Glu Asn Glu Lys Ala Met Val 705 710 715 720 Thr Glu Thr Met Thr Lys Leu Arg Asn Glu Leu Lys Ala Leu Lys Glu 725 730 735 Asp Ala Ala Thr Phe Ser Ser Leu Arg Ala Met Phe Ala Thr Arg Cys 740 745 750 Asp Glu Tyr Val Thr Gln Leu Asp Glu Met Gln Arg Gln Leu Ala Ala 755 760 765 Ala Glu Asp Glu Lys Lys Thr Leu Asn Thr Leu Leu Arg Met Ala Ile 770 775 780 Gln Gln Lys Leu Ala Leu Thr Gln Arg Leu Glu Asp Leu Glu Phe Asp 785 790 795 800 His Glu Gln Ser Arg Arg Ser Lys Gly Lys Leu Gly Lys Ser Lys Ile 805 810 815 Gly Ser Pro Lys Val Ser Gly Glu Ala Ser Val Thr Val Pro Thr Ile 820 825 830 Asp Thr Tyr Leu Leu His Ser Gln Gly Pro Gln Thr Pro Asn Ile Arg 835 840 845 Val Ser Ser Gly Thr Gln Arg Lys Arg Gln Phe Ser Pro Ser Leu Cys 850 855 860 Asp Gln Ser Arg Pro Arg Thr Ser Gly Ala Ser Tyr Leu Gln Asn Leu 865 870 875 880 Leu Arg Val Pro Pro Asp Pro Thr Ser Thr Glu Ser Phe Leu Leu Lys 885 890 895 Gly Pro Pro Ser Met Ser Glu Phe Ile Gln Gly His Arg Leu Ser Lys 900 905 910 Glu Lys Arg Leu Thr Val Ala Pro Pro Asp Cys Gln Gln Pro Ala Ala 915 920 925 Ser Val Pro Pro Gln Cys Ser Gln Leu Ala Gly Arg Gln Asp Cys Pro 930 935 940 Thr Val Ser Pro Asp Thr Ala Leu Pro Glu Glu Gln Pro His Ser Ser 945 950 955 960 Ser Gln Cys Ala Pro Leu His Cys Leu Ser Lys Pro Pro His Pro 965 970 975 13244PRTHomo sapiens 13Met Ala Leu Phe Leu Asp Lys Met Gly Ser Leu Gln Lys Gly Asn Tyr 1 5 10 15 Ser Ser Gln Ser Gly Met Ile Pro Gly Ser Trp Gln His Lys Met Lys 20 25 30 Leu Gln Leu Ile Leu Lys Ser Ser Lys Ala Tyr Tyr Val Leu Ser Asp 35 40 45 Ala Ala Met Ser Leu Gln Lys Tyr Gly Arg Ala Leu Arg Tyr Ile Lys 50 55 60 Leu Ala Leu Gln Ser His Asp Thr Tyr Cys Cys Leu Cys Thr Asn Met 65 70 75 80 Leu Ser Glu Val Leu Leu Phe Leu Ser Gln Tyr Leu Thr Leu Cys Gly 85 90 95 Asp Ile Gln Leu Met Leu Ala Gln Asn Ala Asn Asn Arg Ala Ala His 100 105 110 Leu Glu Glu Phe His Tyr Gln Thr Lys Glu Asp Gln Glu Ile Leu His 115 120 125 Ser Leu His Arg Glu Ser Ser Cys Gln Gly Val Pro Gln Ala Trp Thr 130 135 140 Thr Trp Phe Thr Val Gly Leu Cys Ser Leu Ala His Ala Tyr Leu Ser 145 150 155 160 Ile Gln Lys Arg Gly Arg Asn Ile Arg Val Leu Ile Phe Ala Leu Tyr 165 170 175 Leu Phe Ile Tyr Phe Leu Arg Arg Ser Phe Ala Leu Val Ala Gln Ala 180 185 190 Gly Val Gln Trp Cys Asn Leu Gly Ser Leu Lys Pro Pro Pro Pro Gly 195 200 205 Phe Lys Gln Phe Ser Cys Leu Ser Leu Pro Ser Ser Trp Asn Tyr Arg 210 215 220 His Ala Pro Pro Cys Pro Ala Ser Pro Pro Trp Pro Pro Lys Val Leu 225 230 235 240 Gly Leu Gln Val 14502PRTHomo sapiens 14Met Asp Tyr Asp Phe Lys Ala Lys Leu Ala Ala Glu Arg Glu Arg Val 1 5 10 15 Glu Asp Leu Phe Glu Tyr Glu Gly Cys Lys Val Gly Arg Gly Thr Tyr 20 25 30 Gly His Val Tyr Lys Ala Arg Arg Lys Asp Gly Lys Asp Glu Lys Glu 35 40 45 Tyr Ala Leu Lys Gln Ile Glu Gly Thr Gly Ile Ser Met Ser Ala Cys 50 55 60 Arg Glu Ile Ala Leu Leu Arg Glu Leu Lys His Pro Asn Val Ile Ala 65 70 75 80 Leu Gln Lys Val Phe Leu Ser His Ser Asp Arg Lys Val Trp Leu Leu 85 90 95 Phe Asp Tyr Ala Glu His Asp Leu Trp His Ile Ile Lys Phe His Arg 100 105 110 Ala Ser Lys Ala Asn Lys Lys Pro Met Gln Leu Pro Arg Ser Met Val 115 120 125 Lys Ser Leu Leu Tyr Gln Ile Leu Asp Gly Ile His Tyr Leu His Ala 130 135 140 Asn Trp Val Leu His Arg Asp Leu Lys Pro Ala Asn Ile Leu Val Met 145 150 155 160 Gly Glu Gly Pro Glu Arg Gly Arg Val Lys Ile Ala Asp Met Gly Phe 165 170 175 Ala Arg Leu Phe Asn Ser Pro Leu Lys Pro Leu Ala Asp Leu Asp Pro 180 185 190 Val Val Val Thr Phe Trp Tyr Arg Ala Pro Glu Leu Leu Leu Gly Ala 195 200 205 Arg His Tyr Thr Lys Ala Ile Asp Ile Trp Ala Ile Gly Cys Ile Phe 210 215 220 Ala Glu Leu Leu Thr Ser Glu Pro Ile Phe His Cys Arg Gln Glu Asp 225 230 235 240 Ile Lys Thr Ser Asn Pro Phe His His Asp Gln Leu Asp Arg Ile Phe 245 250 255 Ser Val Met Gly Phe Pro Ala Asp Lys Asp Trp Glu Asp Ile Arg Lys 260 265 270 Met Pro Glu Tyr Pro Thr Leu Gln Lys Asp Phe Arg Arg Thr Thr Tyr 275 280 285 Ala Asn Ser Ser Leu Ile Lys Tyr Met Glu Lys His Lys Val Lys Pro 290 295 300 Asp Ser Lys Val Phe Leu Leu Leu Gln Lys Leu Leu Thr Met Asp Pro 305 310 315 320 Thr Lys Arg Ile Thr Ser Glu Gln Ala Leu Gln Asp Pro Tyr Phe Gln 325 330 335 Glu Asp Pro Leu Pro Thr Leu Asp Val Phe Ala Gly Cys Gln Ile Pro 340 345 350 Tyr Pro Lys Arg Glu Phe Leu Asn Glu Asp Asp Pro Glu Glu Lys Gly 355 360 365 Asp Lys Asn Gln Gln Gln Gln Gln Asn Gln His Gln Gln Pro Thr Ala 370 375 380 Pro Pro Gln Gln Ala Ala Ala Pro Pro Gln Ala Pro Pro Pro Gln Gln 385 390 395 400 Asn Ser Thr Gln Thr Asn Gly Thr Ala Gly Gly Ala Gly Ala Gly Val 405 410 415 Gly Gly Thr Gly Ala Gly Leu Gln His Ser Gln Asp Ser Ser Leu Asn 420 425 430 Gln Val Pro Pro Asn Lys Lys Pro Arg Leu Gly Pro Ser Gly Ala Asn 435 440 445 Ser Gly Gly Pro Val Met Pro Ser Asp Tyr Gln His Ser Ser Ser Arg 450 455 460 Leu Asn Tyr Gln Ser Ser Val Gln Gly Ser Ser Gln Ser Gln Ser Thr 465 470 475 480 Leu Gly Tyr Ser Ser Ser Ser Gln Gln Ser Ser Gln Tyr His Pro Ser 485 490 495 His Gln Ala His Arg Tyr 500 15483PRTHomo sapiens 15Met Ser Gly His Lys Cys Ser Tyr Pro Trp Asp Leu Gln Asp Arg Tyr 1 5 10 15 Ala Gln Asp Lys Ser Val Val Asn Lys Met Gln Gln Lys Tyr Trp Glu 20 25 30 Thr Lys Gln Ala Phe Ile Lys Ala Thr Gly Lys Lys Glu Asp Glu His 35 40 45 Val Val Ala Ser Asp Ala Asp Leu Asp Ala Lys Leu Glu Leu Phe His 50 55 60 Ser Ile Gln Arg Thr Cys Leu Asp Leu Ser Lys Ala Ile Val Leu Tyr 65 70 75 80 Gln Lys Arg Ile Cys Phe Leu Ser Gln Glu Glu Asn Glu Leu Gly Lys 85 90 95 Phe Leu Arg Ser Gln Gly Phe Gln Asp Lys Thr Arg Ala Gly Lys Met 100 105 110 Met Gln Ala Thr Gly Lys Ala Leu Cys Phe Ser Ser Gln Gln Arg Leu 115 120 125 Ala Leu Arg Asn Pro Leu Cys Arg Phe His Gln Glu Val Glu Thr Phe 130 135 140 Arg His Arg Ala Ile Ser Asp Thr Trp Leu Thr Val Asn Arg Met Glu 145 150 155 160 Gln Cys Arg Thr Glu Tyr Arg Gly Ala Leu Leu Trp Met Lys Asp Val 165 170 175 Ser Gln Glu Leu Asp Pro Asp Leu Tyr Lys Gln Met Glu Lys Phe Arg 180 185 190 Lys Val Gln Thr Gln Val Arg Leu Ala Lys Lys Asn Phe Asp Lys Leu 195 200 205 Lys Met Asp Val Cys Gln Lys Val Asp Leu Leu Gly Ala Ser Arg Cys 210 215 220 Asn Leu Leu Ser His Met Leu Ala Thr Tyr Gln Thr Thr Leu Leu His 225 230 235 240 Phe Trp Glu Lys Thr Ser His Thr Met Ala Ala Ile His Glu Ser Phe 245 250 255 Lys Gly Tyr Gln Pro Tyr Glu Phe Thr Thr Leu Lys Ser Leu Gln Asp 260 265 270 Pro Met Lys Lys Leu Val Glu Lys Glu Glu Lys Lys Lys Ile Asn Gln 275 280 285 Gln Glu Ser Thr Asp Ala Ala Val Gln Glu Pro Ser Gln Leu Ile Ser 290 295 300 Leu Glu Glu Glu Asn Gln Arg Lys Glu Ser Ser Ser Phe Lys Thr Glu 305 310 315 320 Asp Gly Lys Ser Ile Leu Ser Ala Leu Asp Lys Gly Ser Thr His Thr 325 330 335 Ala Cys Ser Gly Pro Ile Asp Glu Leu Leu Asp Met Lys Ser Glu Glu 340 345 350 Gly Ala Cys Leu Gly Pro Val Ala Gly Thr Pro Glu Pro Glu Gly Ala 355 360 365 Asp Lys Asp Asp Leu Leu Leu Leu Ser Glu Ile Phe Asn Ala Ser Ser 370 375 380 Leu Glu Glu Gly Glu Phe Ser Lys Glu Trp Ala Ala Val Phe Gly Asp 385 390 395 400 Gly Gln Val Lys Glu Pro Val Pro Thr Met Ala Leu Gly Glu Pro Asp 405 410 415 Pro Lys Ala Gln Thr Gly Ser Gly Phe Leu Pro Ser Gln Leu Leu Asp 420 425 430 Gln Asn Met Lys Asp Leu Gln Ala Ser Leu Gln Glu Pro Ala Lys Ala 435 440 445 Ala Ser Asp Leu Thr Ala Trp Phe Ser Leu Phe Ala Asp Leu Asp Pro 450 455 460 Leu Ser Asn Pro Asp Ala Val Gly Lys Thr Asp Lys Glu His Glu Leu 465 470 475 480 Leu Asn Ala 1690PRTHomo sapiens 16Gly Asp Asp Gly Gly Gly Cys Asp Asp Gly Asp Asp Asp Gly Asp Asp 1 5 10 15 Asp Gly Gly Gly Gly Asp Gly Gly Gly Asp Gly Asp Asp Gly Gly Asp 20 25 30 Gly Gly Asp Asp Asp Gly Asp His Asp Asp Gly Asp Gly Gly Tyr Gly 35 40 45 Gly Asp Asp Gly Asp Asp Asp Gly Asp Gly Gly Gly Asp Gly Asp Asp 50 55 60 Asp Asp Ser Asp Asp Gly Gly Asp Asp Ala Asn Asp Asp Gly Gly Gly 65 70 75 80 Cys His Ala Leu Leu Thr Ser Gly Lys Asp 85 90 17712PRTHomo sapiens 17Met Ala Glu Leu Gly Ala Gly Gly Asp Gly His Arg Gly Gly Asp Gly 1 5 10 15 Ala Val Arg Ser Glu Thr Ala Pro Asp Ser Tyr Lys Val Gln Asp Lys 20 25 30 Lys Asn Ala Ser Ser Arg Pro Ala Ser Ala Ile Ser Gly Gln Asn Asn 35 40 45 Asn His Ser Gly Asn Lys Pro Asp Pro Pro Pro Val Leu Arg Val Asp 50 55 60 Asp Arg Gln Arg Leu Ala Arg Glu Arg Arg Glu Glu Arg Glu Lys Gln 65 70 75 80 Leu Ala Ala Arg Glu Ile Val Trp Leu Glu Arg Glu Glu Arg Ala Arg 85 90 95 Gln His Tyr Glu Lys His Leu Glu Glu Arg Lys Lys Arg Leu Glu Glu 100 105 110 Gln Arg Gln Lys Glu Glu Arg Arg Arg Ala Ala Val Glu Glu Lys Arg 115 120 125 Arg Gln Arg Leu Glu Glu Asp Lys Glu Arg His Glu Ala Val Val Arg 130 135 140 Arg Thr Met Glu Arg Ser Gln Lys Pro Lys Gln Lys His Asn Arg Trp 145 150 155 160 Ser Trp Gly Gly Ser Leu His Gly Ser Pro Ser Ile His Ser Ala Ala 165 170 175 Arg Arg Leu Gln Leu Ser Pro Trp Glu Ser Ser Val Val Asn Arg Leu 180 185 190 Leu Thr Pro Thr His Ser Phe Leu Ala Arg Ser Lys Ser Thr Ala Ala 195 200 205 Leu Ser Gly Glu Ala Ala Ser Cys Ser Pro Ile Ile Met Pro Tyr Lys 210 215 220 Ala Ala His Ser Arg Asn Ser Met Asp Arg Pro Lys Leu Phe Val Thr 225 230 235 240 Pro Pro Glu Gly Ser Ser Arg Arg Arg Ile Ile His Gly Thr Ala Ser 245 250 255 Tyr Lys Lys Glu Arg Glu Arg Glu Asn Val Leu Phe Leu Thr Ser Gly 260 265 270 Thr Arg Arg Ala Val Ser Pro Ser Asn Pro Lys Ala Arg Gln Pro Ala 275 280 285 Arg Ser Arg Leu Trp Leu Pro Ser Lys Ser Leu Pro His Leu Pro Gly 290 295 300 Thr Pro Arg Pro Thr Ser Ser Leu Pro Pro Gly Ser Val Lys Ala Ala 305 310 315 320 Pro Ala Gln Val Arg Pro Pro Ser Pro Gly Asn Ile Arg Pro Val Lys 325 330 335 Arg Glu Val Lys Val Glu Pro Glu Lys Lys Asp Pro Glu Lys Glu Pro 340 345 350 Gln Lys Val Ala Asn Glu Pro Ser Leu Lys Gly Arg Ala Pro Leu Val 355 360 365 Lys Val Glu Glu Ala Thr Val Glu Glu Arg Thr Pro Ala Glu Pro Glu 370 375 380 Val Gly Pro Ala Ala Pro Ala Met Ala Pro Ala Pro Ala Ser Ala Pro 385 390 395 400 Ala Pro Ala Ser Ala Pro Ala Pro Ala Pro Val Pro Thr Pro Ala Met 405 410 415 Val Ser Ala Pro Ser Ser Thr Val Asn Ala Ser Ala Ser Val Lys Thr 420 425 430 Ser Ala Gly Thr Thr Asp Pro Glu Glu Ala Thr Arg Leu Leu Ala Glu 435 440 445 Lys Arg Arg Leu Ala Arg Glu Gln Arg Glu Lys Glu Glu Arg Glu Arg 450 455 460 Arg Glu Gln Glu Glu Leu Glu Arg Gln Lys Arg Glu Glu Leu Ala Gln 465 470 475 480 Arg Val Ala Glu Glu Arg Thr Thr Arg Arg Glu Glu Glu Ser Arg Arg 485 490 495 Leu Glu Ala Glu Gln Ala Arg Glu Lys Glu Glu Gln Leu Gln Arg Gln 500 505 510 Ala Glu Glu Arg Ala Leu Arg Glu Arg Glu Glu Ala Glu Arg Ala Gln 515 520 525 Arg Gln Lys Glu Glu Glu Ala Arg Val Arg Glu Glu Ala Glu Arg Val 530 535 540 Arg Gln Glu Arg Glu Lys His Phe Gln Arg Glu Glu Gln Glu Arg Leu 545 550 555 560 Glu Arg Lys Lys Arg Leu Glu Glu Ile Met Lys Arg Thr Arg Arg Thr 565 570 575 Glu Ala Thr Asp Lys Lys Thr Ser Asp Gln Arg Asn Gly Asp Ile Ala 580 585 590 Lys Gly Ala Leu Thr Gly Gly Thr Glu Val Ser Ala Leu Pro Cys Thr 595 600 605 Thr Asn Ala Pro Gly Asn Gly Lys Pro Val Gly Ser Pro His Val Val 610 615 620 Thr Ser His Gln Ser Lys Val Thr Val Glu Ser Thr Pro Asp Leu Glu 625 630 635 640 Lys Gln Pro Asn Glu Asn Gly Val Ser Val Gln Asn Glu Asn Phe Glu 645 650 655 Glu Ile Ile Asn Leu Pro Ile Gly Ser Lys Pro Ser Arg Leu Asp Val 660 665 670

Thr Asn Ser Glu Ser Pro Glu Ile Pro Leu Asn Pro Ile Leu Ala Phe 675 680 685 Asp Asp Glu Gly Thr Leu Gly Pro Leu Pro Gln Val Asp Gly Val Gln 690 695 700 Thr Gln Gln Thr Ala Glu Val Ile 705 710 181285PRTHomo sapiens 18Met Glu Asp Gly Lys Pro Val Trp Ala Pro His Pro Thr Asp Gly Phe 1 5 10 15 Gln Met Gly Asn Ile Val Asp Ile Gly Pro Asp Ser Leu Thr Ile Glu 20 25 30 Pro Leu Asn Gln Lys Gly Lys Thr Phe Leu Ala Leu Ile Asn Gln Val 35 40 45 Phe Pro Ala Glu Glu Asp Ser Lys Lys Asp Val Glu Asp Asn Cys Ser 50 55 60 Leu Met Tyr Leu Asn Glu Ala Thr Leu Leu His Asn Ile Lys Val Arg 65 70 75 80 Tyr Ser Lys Asp Arg Ile Tyr Thr Tyr Val Ala Asn Ile Leu Ile Ala 85 90 95 Val Asn Pro Tyr Phe Asp Ile Pro Lys Ile Tyr Ser Ser Glu Ala Ile 100 105 110 Lys Ser Tyr Gln Gly Lys Ser Leu Gly Thr Arg Pro Pro His Val Phe 115 120 125 Ala Ile Ala Asp Lys Ala Phe Arg Asp Met Lys Val Leu Lys Met Ser 130 135 140 Gln Ser Ile Ile Val Ser Gly Glu Ser Gly Ala Gly Lys Thr Glu Asn 145 150 155 160 Thr Lys Phe Val Leu Arg Tyr Leu Thr Glu Ser Tyr Gly Thr Gly Gln 165 170 175 Asp Ile Asp Asp Arg Ile Val Glu Ala Asn Pro Leu Leu Glu Ala Phe 180 185 190 Gly Asn Ala Lys Thr Val Arg Asn Asn Asn Ser Ser Arg Phe Gly Lys 195 200 205 Phe Val Glu Ile His Phe Asn Glu Lys Ser Ser Val Val Gly Gly Phe 210 215 220 Val Ser His Tyr Leu Leu Glu Lys Ser Arg Ile Cys Val Gln Gly Lys 225 230 235 240 Glu Glu Arg Asn Tyr His Ile Phe Tyr Arg Leu Cys Ala Gly Ala Ser 245 250 255 Glu Asp Ile Arg Glu Lys Leu His Leu Ser Ser Pro Asp Asn Phe Arg 260 265 270 Tyr Leu Asn Arg Gly Cys Thr Arg Tyr Phe Ala Asn Lys Glu Thr Asp 275 280 285 Lys Gln Ile Leu Gln Asn Arg Lys Ser Pro Glu Tyr Leu Lys Ala Gly 290 295 300 Ser Met Lys Asp Pro Leu Leu Asp Asp His Gly Asp Phe Ile Arg Met 305 310 315 320 Cys Thr Ala Met Lys Lys Ile Gly Leu Asp Asp Glu Glu Lys Leu Asp 325 330 335 Leu Phe Arg Val Val Ala Gly Val Leu His Leu Gly Asn Ile Asp Phe 340 345 350 Glu Glu Ala Gly Ser Thr Ser Gly Gly Cys Asn Leu Lys Asn Lys Ser 355 360 365 Ala Gln Ser Leu Glu Tyr Cys Ala Glu Leu Leu Gly Leu Asp Gln Asp 370 375 380 Asp Leu Arg Val Ser Leu Thr Thr Arg Val Met Leu Thr Thr Ala Gly 385 390 395 400 Gly Thr Lys Gly Thr Val Ile Lys Val Pro Leu Lys Val Glu Gln Ala 405 410 415 Asn Asn Ala Arg Asp Ala Leu Ala Lys Thr Val Tyr Ser His Leu Phe 420 425 430 Asp His Val Val Asn Arg Val Asn Gln Cys Phe Pro Phe Glu Thr Ser 435 440 445 Ser Tyr Phe Ile Gly Val Leu Asp Ile Ala Gly Phe Glu Tyr Phe Glu 450 455 460 His Asn Ser Phe Glu Gln Phe Cys Ile Asn Tyr Cys Asn Glu Lys Leu 465 470 475 480 Gln Gln Phe Phe Asn Glu Arg Ile Leu Lys Glu Glu Gln Glu Leu Tyr 485 490 495 Gln Lys Glu Gly Leu Gly Val Asn Glu Val His Tyr Val Asp Asn Gln 500 505 510 Asp Cys Ile Asp Leu Ile Glu Ala Lys Leu Val Gly Ile Leu Asp Ile 515 520 525 Leu Asp Glu Glu Asn Arg Leu Pro Gln Pro Ser Asp Gln His Phe Thr 530 535 540 Ser Ala Val His Gln Lys His Lys Asp His Phe Arg Leu Thr Ile Pro 545 550 555 560 Arg Lys Ser Lys Leu Ala Val His Arg Asn Ile Arg Asp Asp Glu Gly 565 570 575 Phe Ile Ile Arg His Phe Ala Gly Ala Val Cys Tyr Glu Thr Thr Gln 580 585 590 Phe Val Glu Lys Asn Asn Asp Ala Leu His Met Ser Leu Glu Ser Leu 595 600 605 Ile Cys Glu Ser Arg Asp Lys Phe Ile Arg Glu Leu Phe Glu Ser Ser 610 615 620 Thr Asn Asn Asn Lys Asp Thr Lys Gln Lys Ala Gly Lys Leu Ser Phe 625 630 635 640 Ile Ser Val Gly Asn Lys Phe Lys Thr Gln Leu Asn Leu Leu Leu Asp 645 650 655 Lys Leu Arg Ser Thr Gly Ala Ser Phe Ile Arg Cys Ile Lys Pro Asn 660 665 670 Leu Lys Met Thr Ser His His Phe Glu Gly Ala Gln Ile Leu Ser Gln 675 680 685 Leu Gln Cys Ser Gly Met Val Ser Val Leu Asp Leu Met Gln Gly Gly 690 695 700 Tyr Pro Ser Arg Ala Ser Phe His Glu Leu Tyr Asn Met Tyr Lys Lys 705 710 715 720 Tyr Met Pro Asp Lys Leu Ala Arg Leu Asp Pro Arg Leu Phe Cys Lys 725 730 735 Ala Leu Phe Lys Ala Leu Gly Leu Asn Glu Asn Asp Tyr Lys Phe Gly 740 745 750 Leu Thr Lys Val Phe Phe Arg Pro Gly Lys Phe Ala Glu Phe Asp Gln 755 760 765 Ile Met Lys Ser Asp Pro Asp His Leu Ala Glu Leu Val Lys Arg Val 770 775 780 Asn His Trp Leu Thr Cys Ser Arg Trp Lys Lys Val Gln Trp Cys Ser 785 790 795 800 Leu Ser Val Ile Lys Leu Lys Asn Lys Ile Lys Tyr Arg Ala Glu Ala 805 810 815 Cys Ile Lys Met Gln Lys Thr Ile Arg Met Trp Leu Cys Lys Arg Arg 820 825 830 His Lys Pro Arg Ile Asp Gly Leu Val Lys Val Gly Thr Leu Lys Lys 835 840 845 Arg Leu Asp Lys Phe Asn Glu Val Val Ser Val Leu Lys Asp Gly Lys 850 855 860 Pro Glu Met Asn Lys Gln Ile Lys Asn Leu Glu Ile Ser Ile Asp Thr 865 870 875 880 Leu Met Ala Lys Ile Lys Ser Thr Met Met Thr Gln Glu Gln Ile Gln 885 890 895 Lys Glu Tyr Asp Ala Leu Val Lys Ser Ser Glu Glu Leu Leu Ser Ala 900 905 910 Leu Gln Lys Lys Lys Gln Gln Glu Glu Glu Ala Glu Arg Leu Arg Arg 915 920 925 Ile Gln Glu Glu Met Glu Lys Glu Arg Lys Arg Arg Glu Glu Asp Glu 930 935 940 Lys Arg Arg Arg Lys Glu Glu Glu Glu Arg Arg Met Lys Leu Glu Met 945 950 955 960 Glu Ala Lys Arg Lys Gln Glu Glu Glu Glu Arg Lys Lys Arg Glu Asp 965 970 975 Asp Glu Lys Arg Ile Gln Ala Glu Val Glu Ala Gln Leu Ala Arg Gln 980 985 990 Lys Glu Glu Glu Ser Gln Gln Gln Ala Val Leu Glu Gln Glu Arg Arg 995 1000 1005 Asp Arg Glu Leu Ala Leu Arg Ile Ala Gln Ser Glu Ala Glu Leu 1010 1015 1020 Ile Ser Asp Glu Ala Gln Ala Asp Leu Ala Leu Arg Arg Asn Asp 1025 1030 1035 Gly Thr Arg Pro Lys Met Thr Pro Glu Gln Met Ala Lys Glu Met 1040 1045 1050 Ser Glu Phe Leu Ser Arg Gly Pro Ala Val Leu Ala Thr Lys Ala 1055 1060 1065 Ala Ala Gly Thr Lys Lys Tyr Asp Leu Ser Lys Trp Lys Tyr Ala 1070 1075 1080 Glu Leu Arg Asp Thr Ile Asn Thr Ser Cys Asp Ile Glu Leu Leu 1085 1090 1095 Ala Ala Cys Arg Glu Glu Phe His Arg Arg Leu Lys Val Tyr His 1100 1105 1110 Ala Trp Lys Ser Lys Asn Lys Lys Arg Asn Thr Glu Thr Glu Gln 1115 1120 1125 Arg Ala Pro Lys Ser Val Thr Asp Tyr Asp Phe Ala Pro Phe Leu 1130 1135 1140 Asn Asn Ser Pro Gln Gln Asn Pro Ala Ala Gln Ile Pro Ala Arg 1145 1150 1155 Gln Arg Glu Ile Glu Met Asn Arg Gln Gln Arg Phe Phe Arg Ile 1160 1165 1170 Pro Phe Ile Arg Pro Ala Asp Gln Tyr Lys Asp Pro Gln Ser Lys 1175 1180 1185 Lys Lys Gly Trp Trp Tyr Ala His Phe Asp Gly Pro Trp Ile Ala 1190 1195 1200 Arg Gln Met Glu Leu His Pro Asp Lys Pro Pro Ile Leu Leu Val 1205 1210 1215 Ala Gly Lys Asp Asp Met Glu Met Cys Glu Leu Asn Leu Glu Glu 1220 1225 1230 Thr Gly Leu Thr Arg Lys Arg Gly Ala Glu Ile Leu Pro Arg Gln 1235 1240 1245 Phe Glu Glu Ile Trp Glu Arg Cys Gly Gly Ile Gln Tyr Leu Gln 1250 1255 1260 Asn Ala Ile Glu Ser Arg Gln Ala Arg Pro Thr Tyr Ala Thr Ala 1265 1270 1275 Met Leu Gln Ser Leu Leu Lys 1280 1285 19320PRTHomo sapiens 19Met Ser Ser Cys Asn Phe Thr His Ala Thr Phe Val Leu Ile Gly Ile 1 5 10 15 Pro Gly Leu Glu Lys Ala His Phe Trp Val Gly Phe Pro Leu Leu Ser 20 25 30 Met Tyr Val Val Ala Met Phe Gly Asn Cys Ile Val Val Phe Ile Val 35 40 45 Arg Thr Glu Arg Ser Leu His Ala Pro Met Tyr Leu Phe Leu Cys Met 50 55 60 Leu Ala Ala Ile Asp Leu Ala Leu Ser Thr Ser Thr Met Pro Lys Ile 65 70 75 80 Leu Ala Leu Phe Trp Phe Asp Ser Arg Glu Ile Ser Phe Glu Ala Cys 85 90 95 Leu Thr Gln Met Phe Phe Ile His Ala Leu Ser Ala Ile Glu Ser Thr 100 105 110 Ile Leu Leu Ala Met Ala Phe Asp Arg Tyr Val Ala Ile Cys His Pro 115 120 125 Leu Arg His Ala Ala Val Leu Asn Asn Thr Val Thr Ala Gln Ile Gly 130 135 140 Ile Val Ala Val Val Arg Gly Ser Leu Phe Phe Phe Pro Leu Pro Leu 145 150 155 160 Leu Ile Lys Arg Leu Ala Phe Cys His Ser Asn Val Leu Ser His Ser 165 170 175 Tyr Cys Val His Gln Asp Val Met Lys Leu Ala Tyr Ala Asp Thr Leu 180 185 190 Pro Asn Val Val Tyr Gly Leu Thr Ala Ile Leu Leu Val Met Gly Val 195 200 205 Asp Val Met Phe Ile Ser Leu Ser Tyr Phe Leu Ile Ile Arg Thr Val 210 215 220 Leu Gln Leu Pro Ser Lys Ser Glu Arg Ala Lys Ala Phe Gly Thr Cys 225 230 235 240 Val Ser His Ile Gly Val Val Leu Ala Phe Tyr Val Pro Leu Ile Gly 245 250 255 Leu Ser Val Val His Arg Phe Gly Asn Ser Leu His Pro Ile Val Arg 260 265 270 Val Val Met Gly Asp Ile Tyr Leu Leu Leu Pro Pro Val Ile Asn Pro 275 280 285 Ile Ile Tyr Gly Ala Lys Thr Lys Gln Ile Arg Thr Arg Val Leu Ala 290 295 300 Met Phe Lys Ile Ser Cys Asp Lys Asp Leu Gln Ala Val Gly Gly Lys 305 310 315 320 20425PRTHomo sapiens 20Met Ala Thr Ala Glu Val Leu Asn Ile Gly Lys Lys Leu Tyr Glu Gly 1 5 10 15 Lys Thr Lys Glu Val Tyr Glu Leu Leu Asp Ser Pro Gly Lys Val Leu 20 25 30 Leu Gln Ser Lys Asp Gln Ile Thr Ala Gly Asn Ala Ala Arg Lys Asn 35 40 45 His Leu Glu Gly Lys Ala Ala Ile Ser Asn Lys Ile Thr Ser Cys Ile 50 55 60 Phe Gln Leu Leu Gln Glu Ala Gly Ile Lys Thr Ala Phe Thr Arg Lys 65 70 75 80 Cys Gly Glu Thr Ala Phe Ile Ala Pro Gln Cys Glu Met Ile Pro Ile 85 90 95 Glu Trp Val Cys Arg Arg Ile Ala Thr Gly Ser Phe Leu Lys Arg Asn 100 105 110 Pro Gly Val Lys Glu Gly Tyr Lys Phe Tyr Pro Pro Lys Val Glu Leu 115 120 125 Phe Phe Lys Asp Asp Ala Asn Asn Asp Pro Gln Trp Ser Glu Glu Gln 130 135 140 Leu Ile Ala Ala Lys Phe Cys Phe Ala Gly Leu Leu Ile Gly Gln Thr 145 150 155 160 Glu Val Asp Ile Met Ser His Ala Thr Gln Ala Ile Phe Glu Ile Leu 165 170 175 Glu Lys Ser Trp Leu Pro Gln Asn Cys Thr Leu Val Asp Met Lys Ile 180 185 190 Glu Phe Gly Val Asp Val Thr Thr Lys Glu Ile Val Leu Ala Asp Val 195 200 205 Ile Asp Asn Asp Ser Trp Arg Leu Trp Pro Ser Gly Asp Arg Ser Gln 210 215 220 Gln Lys Asp Lys Gln Ser Tyr Arg Asp Leu Lys Glu Val Thr Pro Glu 225 230 235 240 Gly Leu Gln Met Val Lys Lys Asn Phe Glu Trp Val Ala Glu Arg Val 245 250 255 Glu Leu Leu Leu Lys Ser Glu Ser Gln Cys Arg Val Val Val Leu Met 260 265 270 Gly Ser Thr Ser Asp Leu Gly His Cys Glu Lys Ile Lys Lys Ala Cys 275 280 285 Gly Asn Phe Gly Ile Pro Cys Glu Leu Arg Val Thr Ser Ala His Lys 290 295 300 Gly Pro Asp Glu Thr Leu Arg Ile Lys Ala Glu Tyr Glu Gly Asp Gly 305 310 315 320 Ile Pro Thr Val Phe Val Ala Val Ala Gly Arg Ser Asn Gly Leu Gly 325 330 335 Pro Val Met Ser Gly Asn Thr Ala Tyr Pro Val Ile Ser Cys Pro Pro 340 345 350 Leu Thr Pro Asp Trp Gly Val Gln Asp Val Trp Ser Ser Leu Arg Leu 355 360 365 Pro Ser Gly Leu Gly Cys Ser Thr Val Leu Ser Pro Glu Gly Ser Ala 370 375 380 Gln Phe Ala Ala Gln Ile Phe Gly Leu Ser Asn His Leu Val Trp Ser 385 390 395 400 Lys Leu Arg Ala Ser Ile Leu Asn Thr Trp Ile Ser Leu Lys Gln Ala 405 410 415 Asp Lys Lys Ile Arg Glu Cys Asn Leu 420 425 21968PRTHomo sapiens 21Met Pro Pro Arg Ala Pro Pro Ala Pro Gly Pro Arg Pro Pro Pro Arg 1 5 10 15 Ala Ala Ala Ala Thr Asp Thr Ala Ala Gly Ala Gly Gly Ala Gly Gly 20 25 30 Ala Gly Gly Ala Gly Gly Pro Gly Phe Arg Pro Leu Ala Pro Arg Pro 35 40 45 Trp Arg Trp Leu Leu Leu Leu Ala Leu Pro Ala Ala Cys Ser Ala Pro 50 55 60 Pro Pro Arg Pro Val Tyr Thr Asn His Trp Ala Val Gln Val Leu Gly 65 70 75 80 Gly Pro Ala Glu Ala Asp Arg Val Ala Ala Ala His Gly Tyr Leu Asn 85 90 95 Leu Gly Gln Gly Asn Leu Glu Asp Tyr Tyr His Phe Tyr His Ser Lys 100 105 110 Thr Phe Lys Arg Ser Thr Leu Ser Ser Arg Gly Pro His Thr Phe Leu 115 120 125 Arg Met Asp Pro Gln Val Lys Trp Leu Gln Gln Gln Glu Val Lys Arg 130 135 140 Arg Val Lys Arg Gln Val Arg Ser Asp Pro Gln Ala Leu Tyr Phe Asn 145 150 155 160 Asp Pro Ile Trp Ser Asn Met Trp Tyr Leu His Cys Gly Asp Lys Asn 165 170 175 Ser Arg Cys Arg Ser Glu Met Asn Val Gln Ala Ala Trp Lys Arg Gly 180 185 190 Tyr Thr Gly Lys Asn Val Val Val Thr Ile Leu Asp Asp Gly Ile Glu 195 200 205 Arg

Asn His Pro Asp Leu Ala Pro Asn Tyr Asp Ser Tyr Ala Ser Tyr 210 215 220 Asp Val Asn Gly Asn Asp Tyr Asp Pro Ser Pro Arg Tyr Asp Ala Ser 225 230 235 240 Asn Glu Asn Lys His Gly Thr Arg Cys Ala Gly Glu Val Ala Ala Ser 245 250 255 Ala Asn Asn Ser Tyr Cys Ile Val Gly Ile Ala Tyr Asn Ala Lys Ile 260 265 270 Gly Gly Ile Arg Met Leu Asp Gly Asp Val Thr Asp Val Val Glu Ala 275 280 285 Lys Ser Leu Gly Ile Arg Pro Asn Tyr Ile Asp Ile Tyr Ser Ala Ser 290 295 300 Trp Gly Pro Asp Asp Asp Gly Lys Thr Val Asp Gly Pro Gly Arg Leu 305 310 315 320 Ala Lys Gln Ala Phe Glu Tyr Gly Ile Lys Lys Gly Arg Gln Gly Leu 325 330 335 Gly Ser Ile Phe Val Trp Ala Ser Gly Asn Gly Gly Arg Glu Gly Asp 340 345 350 Tyr Cys Ser Cys Asp Gly Tyr Thr Asn Ser Ile Tyr Thr Ile Ser Val 355 360 365 Ser Ser Ala Thr Glu Asn Gly Tyr Lys Pro Trp Tyr Leu Glu Glu Cys 370 375 380 Ala Ser Thr Leu Ala Thr Thr Tyr Ser Ser Gly Ala Phe Tyr Glu Arg 385 390 395 400 Lys Ile Val Thr Thr Asp Leu Arg Gln Arg Cys Thr Asp Gly His Thr 405 410 415 Gly Thr Ser Val Ser Ala Pro Met Val Ala Gly Ile Ile Ala Leu Ala 420 425 430 Leu Glu Ala Asn Ser Gln Leu Thr Trp Arg Asp Val Gln His Leu Leu 435 440 445 Val Lys Thr Ser Arg Pro Ala His Leu Lys Ala Ser Asp Trp Lys Val 450 455 460 Asn Gly Ala Gly His Lys Val Ser His Phe Tyr Gly Phe Gly Leu Val 465 470 475 480 Asp Ala Glu Ala Leu Val Val Glu Ala Lys Lys Trp Thr Ala Val Pro 485 490 495 Ser Gln His Met Cys Val Ala Ala Ser Asp Lys Arg Pro Arg Ser Ile 500 505 510 Pro Leu Val Gln Val Leu Arg Thr Thr Ala Leu Thr Ser Ala Cys Ala 515 520 525 Glu His Ser Asp Gln Arg Val Val Tyr Leu Glu His Val Val Val Arg 530 535 540 Thr Ser Ile Ser His Pro Arg Arg Gly Asp Leu Gln Ile Tyr Leu Val 545 550 555 560 Ser Pro Ser Gly Thr Lys Ser Gln Leu Leu Ala Lys Arg Leu Leu Asp 565 570 575 Leu Ser Asn Glu Gly Phe Thr Asn Trp Glu Phe Met Thr Val His Cys 580 585 590 Trp Gly Glu Lys Ala Glu Gly Gln Trp Thr Leu Glu Ile Gln Asp Leu 595 600 605 Pro Ser Gln Val Arg Asn Pro Glu Lys Gln Gly Lys Leu Lys Glu Trp 610 615 620 Ser Leu Ile Leu Tyr Gly Thr Ala Glu His Pro Tyr His Thr Phe Ser 625 630 635 640 Ala His Gln Ser Arg Ser Arg Met Leu Glu Leu Ser Ala Pro Glu Leu 645 650 655 Glu Pro Pro Lys Ala Ala Leu Ser Pro Ser Gln Val Glu Val Pro Glu 660 665 670 Asp Glu Glu Asp Tyr Thr Ala Gln Ser Thr Pro Gly Ser Ala Asn Ile 675 680 685 Leu Gln Thr Ser Val Cys His Pro Glu Cys Gly Asp Lys Gly Cys Asp 690 695 700 Gly Pro Asn Ala Asp Gln Cys Leu Asn Cys Val His Phe Ser Leu Gly 705 710 715 720 Ser Val Lys Thr Ser Arg Lys Cys Val Ser Val Cys Pro Leu Gly Tyr 725 730 735 Phe Gly Asp Thr Ala Ala Arg Arg Cys Arg Arg Cys His Lys Gly Cys 740 745 750 Glu Thr Cys Ser Ser Arg Ala Ala Thr Gln Cys Leu Ser Cys Arg Arg 755 760 765 Gly Phe Tyr His His Gln Glu Met Asn Thr Cys Val Thr Leu Cys Pro 770 775 780 Ala Gly Phe Tyr Ala Asp Glu Ser Gln Lys Asn Cys Leu Lys Cys His 785 790 795 800 Pro Ser Cys Lys Lys Cys Val Asp Glu Pro Glu Lys Cys Thr Val Cys 805 810 815 Lys Glu Gly Phe Ser Leu Ala Arg Gly Ser Cys Ile Pro Asp Cys Glu 820 825 830 Pro Gly Thr Tyr Phe Asp Ser Glu Leu Ile Arg Cys Gly Glu Cys His 835 840 845 His Thr Cys Gly Thr Cys Val Gly Pro Gly Arg Glu Glu Cys Ile His 850 855 860 Cys Ala Lys Asn Phe His Phe His Asp Trp Lys Cys Val Pro Ala Cys 865 870 875 880 Gly Glu Gly Phe Tyr Pro Glu Glu Met Pro Gly Leu Pro His Lys Val 885 890 895 Cys Arg Arg Cys Asp Glu Asn Cys Leu Ser Cys Ala Gly Ser Ser Arg 900 905 910 Asn Cys Ser Arg Cys Lys Thr Gly Phe Thr Gln Leu Gly Thr Ser Cys 915 920 925 Ile Thr Asn His Thr Cys Ser Asn Ala Asp Glu Thr Phe Cys Glu Met 930 935 940 Val Lys Ser Asn Arg Leu Cys Glu Arg Lys Leu Phe Ile Gln Phe Cys 945 950 955 960 Cys Arg Thr Cys Leu Leu Ala Gly 965 221536DNAHomo sapiens 22cgagcacatg ggccgcgggc cgggcgggct cggggcggcc gggacgagga ggggcgacga 60cgagctgcga gcaaagatgt gccccgggac ccccggcacc ttccagtgga tttccttgcg 120gaaaggatgt tggcggtccc tgtgacctgt ggagacacgg ccagatctgc cctccagcct 180gatcttttgg ccagaaggag attaaaaaga tgcccctcaa gatggctgtg ctgtcagctg 240catggagctt cgttcaagta ttttctgagc ctgatggatt tacagtgatg ttcagtggtc 300tggggaataa cgctggtgga accatgcact ggaatgacac acgcccggca catttcagga 360tactaaaagt ggttttaagg gaggctgtgg ctgaatgcct catggattct tacagcttgg 420atgtccatgg gggacgaagg actgcagctg gctgagaggg ttgagatctc tgtttactta 480gatctctgcc aacttccttt gggtctccct atggaatgta agaccccgac tcttcctggt 540gaagcatctg atgcacgttc catccggcgc tcagctgggc ttgagctgac catactccct 600ggagccttct cccgaggtgg gcgggtgacc ttggcacata cagccatcat gatggtactt 660taagtggagg ctgaatcatc tcccctttga gctgctttgg gaacgtggcc cccttggtgt 720tcccctttta ctgccaggac actgagattt ggagaggtaa gtggcttacc tgaggccatg 780tgctaacaga gaagatgaag agatgattga aacaggccta agaccagacc taagggtctg 840tacattttcc acatactttc catatcttta gaggcctgac caaagcagat cttttccttt 900cttctaggta agtccaaagg cacctgcctg ctgggcccac tgttttctaa ctttcctaac 960tttctgatcc cttggaggtg ataatcaaat attctagtct gaggcattgg gatacatggt 1020gctaggttct gagactctgc gtcaggcctg aaccctgcat tttgtggagg tgggtgggag 1080aatgttcccc tggggaacat gcctagacac gggggacaac agttgccctc atggggaggt 1140acctgtttac tcgctgttat gggaccgctt tcacaaaacc actgcaggtg agtgagttcc 1200tgctgaatat caggcctggt gtctctagac tcattattcc cccacccaac ccctatgtta 1260gttcatctcg agccacattt ttattgccat aatccaggcc tggacaggcc aagatctttt 1320aacaatttta attactgaaa ataataactg catttttttt taaagcccaa ctttttggta 1380agtcagccca aaatacagtc tttgtgttgc catctgggaa ctggatttgg aattgttctt 1440ccatgagact gcagagcaga acggcagggc cagaggtccc acgagctggt cagacccggt 1500tctgctcctt gctggctgag tgaccttggg cattgt 153623167PRTHomo sapiens 23Met Glu His Ile His Asp Ser Asp Gly Ser Ser Ser Ser Ser His Gln 1 5 10 15 Ser Leu Lys Ser Thr Ala Lys Trp Ala Ala Ser Leu Glu Asn Leu Leu 20 25 30 Glu Asp Pro Glu Gly Val Lys Arg Phe Arg Glu Phe Leu Lys Lys Glu 35 40 45 Phe Ser Glu Glu Asn Val Leu Phe Trp Leu Ala Cys Glu Asp Phe Lys 50 55 60 Lys Met Gln Asp Lys Thr Gln Met Gln Glu Lys Ala Lys Glu Ile Tyr 65 70 75 80 Met Thr Phe Leu Ser Ser Lys Ala Ser Ser Gln Val Asn Val Glu Gly 85 90 95 Gln Ser Arg Leu Asn Glu Lys Ile Leu Glu Glu Pro His Pro Leu Met 100 105 110 Phe Gln Lys Leu Gln Asp Gln Ile Phe Asn Leu Met Lys Tyr Asp Ser 115 120 125 Tyr Ser Arg Phe Leu Lys Ser Asp Leu Phe Leu Lys His Lys Arg Thr 130 135 140 Glu Glu Glu Glu Glu Asp Leu Pro Asp Ala Gln Thr Ala Ala Lys Arg 145 150 155 160 Ala Ser Arg Ile Tyr Asn Thr 165 24854DNAHomo sapiensmodified_base(722)..(722)a, c, t, g, unknown or other 24ttttgtcacc tttttcctca ttagaaggaa agtagaaagc cttactttag gatttttaaa 60aaaaaaatcc atctcacccc atattggtct taaataagta tagactaatt aacctaagct 120acctttaaca acgtagaatt tagatgggtt catatatgtg agaaaaacct gaatatagga 180caggggtccc acttttttcc ccacctctgt cgcccaggct agagtatagt ggtgtgatct 240tggcccactg caacctctgc ttcctaggtt caagtgattc tcctgcctca gcctcccaag 300tagctgggat tgtaagagta tgccaccacg cccagctact ttttgtattt ttagtagaga 360cagggtttca tcatgttggc caggatggtc tcttaactcc tgccctcaag tgatccacca 420gagaggagat cctcggcctc cccaagtgct ggattatagg catgagccac cgtgcccagc 480ctactttcta attaattaaa aaaaaaaaaa aaaaaaaaaa aaaaaacttc ccaaatgagc 540tgatagaaaa atgacgtgag gctgctttgc cttcaataat acctagtttt cagctgttcc 600aactcgtttc caaatagaaa ttagctggaa cacactacag taatctcaag gaagggaaaa 660ttaggcctta aaagatacca agaagtcagc atggtaccca attgaaacct tttgacctta 720gngggaattc attctatttg cactaaaagc cttaactgnt ggattcagag tccttttaac 780tgggagttct atagaacttt actttttccc taggcccaga gnggagaagg gtttcttaan 840agcggttcat ggga 85425762DNAHomo sapiensmodified_base(546)..(546)a, c, t, g, unknown or other 25ccgcgcttct tctgcttctt gctctcgtcg tccttgtcgc ggctgcgggt gctggtggtc 60ggggtggagg agccggcgtc gctgtctcgc ttgcgcttcc gtgatgattt cttctgccgg 120acctcctctt cgatctcctc cagcgtgccc tcctcgatgg ccttgagcca ctgcttctcc 180gtcagtgagt cgctgtagtc cacctccttg cggtggcggg agccacggcc gaacatcttc 240tcctcctcct cctcacaggt cagccgctcc acctccgcgt cgtccttgat gatccacgag 300gggagctcgt cctcctccat gaggcgcggc ttccgcttgg ggttgcgggc ctcctcgcgc 360ctgcggtcca ggtccatgcg catgaacaga tcaaactcct cctcgtgccg ggcgatcatc 420tggttgacgg tctcgtcgtc gggcacctcg tcttcctcct catcctgctc ctcgtgctcc 480aggatggcct gcaggaaggc gcgccgctca tggctggagg acttctggtc gaacatgccg 540gcctgnatca ccttctgggt cacgttgagc ttgtacttgg ctgcagncta gatcttctnc 600tncacgctgt ntgcggtgca gaggcggagc acacgcacct cgttctgctg cccccgatgc 660gtggggctcg tcctgcgctt gcaggtcctg gtgagggatc agtcgtgtca naatgatcac 720agttctgccg acctgagtca gccgagcccc caacccgttg ct 76226387PRTHomo sapiens 26Met Ser Val Ala Phe Ala Ala Pro Arg Gln Arg Gly Lys Gly Glu Ile 1 5 10 15 Thr Pro Ala Ala Ile Gln Lys Met Leu Asp Asp Asn Asn His Leu Ile 20 25 30 Gln Cys Ile Met Asp Ser Gln Asn Lys Gly Lys Thr Ser Glu Cys Ser 35 40 45 Gln Tyr Gln Gln Met Leu His Thr Asn Leu Val Tyr Leu Ala Thr Ile 50 55 60 Ala Asp Ser Asn Gln Asn Met Gln Ser Leu Leu Pro Ala Pro Pro Thr 65 70 75 80 Gln Asn Met Pro Met Gly Pro Gly Gly Met Asn Gln Ser Gly Pro Pro 85 90 95 Pro Pro Pro Arg Ser His Asn Met Pro Ser Asp Gly Met Val Gly Gly 100 105 110 Gly Pro Pro Ala Pro His Met Gln Asn Gln Met Asn Gly Gln Met Pro 115 120 125 Gly Pro Asn His Met Pro Met Gln Gly Pro Gly Pro Asn Gln Leu Asn 130 135 140 Met Thr Asn Ser Ser Met Asn Met Pro Ser Ser Ser His Gly Ser Met 145 150 155 160 Gly Gly Tyr Asn His Ser Val Pro Ser Ser Gln Ser Met Pro Val Gln 165 170 175 Asn Gln Met Thr Met Ser Gln Gly Gln Pro Met Gly Asn Tyr Gly Pro 180 185 190 Arg Pro Asn Met Ser Met Gln Pro Asn Gln Gly Pro Met Met His Gln 195 200 205 Gln Pro Pro Ser Gln Gln Tyr Asn Met Pro Gln Gly Gly Gly Gln His 210 215 220 Tyr Gln Gly Gln Gln Pro Pro Met Gly Met Met Gly Gln Val Asn Gln 225 230 235 240 Gly Asn His Met Met Gly Gln Arg Gln Ile Pro Pro Tyr Arg Pro Pro 245 250 255 Gln Gln Gly Pro Pro Gln Gln Tyr Ser Gly Gln Glu Asp Tyr Tyr Gly 260 265 270 Asp Gln Tyr Ser His Gly Gly Gln Gly Pro Pro Glu Gly Met Asn Gln 275 280 285 Gln Tyr Tyr Pro Asp Gly Asn Ser Gln Tyr Gly Gln Gln Gln Asp Ala 290 295 300 Tyr Gln Gly Pro Pro Pro Gln Gln Gly Tyr Pro Pro Gln Gln Gln Gln 305 310 315 320 Tyr Pro Gly Gln Gln Gly Tyr Pro Gly Gln Gln Gln Gly Tyr Gly Pro 325 330 335 Ser Gln Gly Gly Pro Gly Pro Gln Tyr Pro Asn Tyr Pro Gln Gly Gln 340 345 350 Gly Gln Gln Tyr Gly Gly Tyr Arg Pro Thr Gln Pro Gly Pro Pro Gln 355 360 365 Pro Pro Gln Gln Arg Pro Tyr Gly Tyr Asp Gln Gly Gln Tyr Gly Asn 370 375 380 Tyr Gln Gln 385 2710PRTHomo sapiens 27Tyr Gly Leu Pro Asp Val Asn Ile Leu Leu 1 5 10 2810PRTHomo sapiens 28Gly Leu Pro Asp Val Asn Ile Leu Leu Phe 1 5 10 2911PRTHomo sapiens 29Tyr Gly Leu Pro Asp Val Asn Ile Leu Leu Phe 1 5 10 3011PRTHomo sapiens 30Glu Tyr Gly Leu Pro Asp Val Asn Ile Leu Leu 1 5 10 3111PRTHomo sapiens 31Gly Leu Pro Asp Val Asn Ile Leu Leu Phe Gly 1 5 10 3213PRTHomo sapiens 32Glu Tyr Gly Leu Pro Asp Val Asn Ile Leu Leu Phe Gly 1 5 10 3310PRTHomo sapiens 33Ile Gln Leu Trp Gln Phe Leu Leu Glu Leu 1 5 10 3410PRTHomo sapiens 34Gln Leu Trp Gln Phe Leu Leu Glu Leu Ser 1 5 10 3511PRTHomo sapiens 35Ile Gln Leu Trp Gln Phe Leu Leu Glu Leu Ser 1 5 10 3611PRTHomo sapiens 36Gln Ile Gln Leu Trp Gln Phe Leu Leu Glu Leu 1 5 10 3711PRTHomo sapiens 37Gln Leu Trp Gln Phe Leu Leu Glu Leu Ser Asp 1 5 10 3813PRTHomo sapiens 38Gln Ile Gln Leu Trp Gln Phe Leu Leu Glu Leu Ser Asp 1 5 10 3910PRTHomo sapiens 39Asn Phe Val Ala Pro His Pro Pro Ala Leu 1 5 10 4010PRTHomo sapiens 40Phe Val Ala Pro His Pro Pro Ala Leu Pro 1 5 10 4111PRTHomo sapiens 41Asn Phe Val Ala Pro His Pro Pro Ala Leu Pro 1 5 10 4211PRTHomo sapiens 42Met Asn Phe Val Ala Pro His Pro Pro Ala Leu 1 5 10 4311PRTHomo sapiens 43Phe Val Ala Pro His Pro Pro Ala Leu Pro Val 1 5 10 4413PRTHomo sapiens 44Met Asn Phe Val Ala Pro His Pro Pro Ala Leu Pro Val 1 5 10 4510PRTHomo sapiens 45Gln Thr Leu Asp Gly Phe Val Phe Val Val 1 5 10 4610PRTHomo sapiens 46Thr Leu Asp Gly Phe Val Phe Val Val Ala 1 5 10 4711PRTHomo sapiens 47Gln Thr Leu Asp Gly Phe Val Phe Val Val Ala 1 5 10 4811PRTHomo sapiens 48Leu Gln Thr Leu Asp Gly Phe Val Phe Val Val 1 5 10 4911PRTHomo sapiens 49Thr Leu Asp Gly Phe Val Phe Val Val Ala Ser 1 5 10 5013PRTHomo sapiens 50Leu Gln Thr Leu Asp Gly Phe Val Phe Val Val Ala Ser 1 5 10 5110PRTHomo sapiens 51Cys Tyr Gln Ile Val Gly Leu Val Ala Val 1 5 10 5210PRTHomo sapiens 52Tyr Gln Ile Val Gly Leu Val Ala Val Gly 1 5 10 5311PRTHomo sapiens 53Cys Tyr Gln Ile Val Gly Leu Val Ala Val Gly 1 5 10 5411PRTHomo sapiens 54Ser Cys Tyr Gln Ile Val Gly Leu Val Ala Val 1 5 10 5511PRTHomo sapiens 55Tyr Gln Ile Val Gly Leu Val Ala Val Gly Gln 1 5 10 5613PRTHomo sapiens 56Ser Cys Tyr Gln Ile Val Gly Leu Val Ala Val Gly Gln 1 5 10 5710PRTHomo sapiens 57Ala Ser Leu Asp Leu Lys Leu Ile Phe Leu 1 5 10 5810PRTHomo sapiens 58Ser Leu Asp Leu Lys Leu Ile Phe Leu Asp 1 5 10 5911PRTHomo sapiens 59Ala Ser Leu Asp Leu Lys Leu Ile Phe Leu Asp 1 5 10 6011PRTHomo sapiens 60Arg Ala Ser Leu Asp Leu Lys Leu Ile Phe Leu 1 5

10 6111PRTHomo sapiens 61Ser Leu Asp Leu Lys Leu Ile Phe Leu Asp Ser 1 5 10 6213PRTHomo sapiens 62Arg Ala Ser Leu Asp Leu Lys Leu Ile Phe Leu Asp Ser 1 5 10 6310PRTHomo sapiens 63Leu Lys Leu Ile Phe Leu Asp Ser Arg Val 1 5 10 6410PRTHomo sapiens 64Lys Leu Ile Phe Leu Asp Ser Arg Val Thr 1 5 10 6511PRTHomo sapiens 65Leu Lys Leu Ile Phe Leu Asp Ser Arg Val Thr 1 5 10 6611PRTHomo sapiens 66Asp Leu Lys Leu Ile Phe Leu Asp Ser Arg Val 1 5 10 6711PRTHomo sapiens 67Lys Leu Ile Phe Leu Asp Ser Arg Val Thr Glu 1 5 10 6813PRTHomo sapiens 68Asp Leu Lys Leu Ile Phe Leu Asp Ser Arg Val Thr Glu 1 5 10 6910PRTHomo sapiens 69Ile Phe Leu Asp Ser Arg Val Thr Glu Val 1 5 10 7010PRTHomo sapiens 70Phe Leu Asp Ser Arg Val Thr Glu Val Thr 1 5 10 7111PRTHomo sapiens 71Ile Phe Leu Asp Ser Arg Val Thr Glu Val Thr 1 5 10 7211PRTHomo sapiens 72Leu Ile Phe Leu Asp Ser Arg Val Thr Glu Val 1 5 10 7311PRTHomo sapiens 73Phe Leu Asp Ser Arg Val Thr Glu Val Thr Gly 1 5 10 7413PRTHomo sapiens 74Leu Ile Phe Leu Asp Ser Arg Val Thr Glu Val Thr Gly 1 5 10 759PRTHomo sapiens 75Ala Leu Pro Asp Val Asn Ile Leu Leu 1 5 769PRTHomo sapiens 76Gln Leu Trp Gln Phe Val Leu Glu Leu 1 5 779PRTHomo sapiens 77Phe Val Ala Pro His Pro Pro Gly Leu 1 5 789PRTHomo sapiens 78Thr Leu Asp Gly Phe Leu Phe Val Val 1 5 799PRTHomo sapiens 79Tyr Gln Ile Val Ala Leu Val Ala Val 1 5 809PRTHomo sapiens 80Ser Leu Asp Val Lys Leu Ile Phe Leu 1 5 819PRTHomo sapiens 81Lys Leu Ile Tyr Leu Asp Ser Arg Val 1 5 829PRTHomo sapiens 82Phe Leu Asp Thr Arg Val Thr Glu Val 1 5 8320DNAArtificial SequenceDescription of Artificial Sequence Synthetic primer 83cttccctctg gactctcacg 208420DNAArtificial SequenceDescription of Artificial Sequence Synthetic primer 84aggctgtgcc tagcagtgtt 208520DNAArtificial SequenceDescription of Artificial Sequence Synthetic primer 85tgcaccacca actgcttagc 208621DNAArtificial SequenceDescription of Artificial Sequence Synthetic primer 86ggcatggact gtggtcatga g 218715DNAArtificial SequenceDescription of Artificial Sequence Synthetic oligonucleotide 87aaagcaggct ccacc 158813PRTHepatitis B virus 88Thr Pro Pro Ala Tyr Arg Pro Pro Asn Ala Pro Ile Leu 1 5 10

Claims

1. A method for treating prostate cancer in a subject comprising administering to said subject a composition comprising a peptide having a sequence with at least 90% sequence identity to SEQ ID NO: 3, wherein said peptide has at least 7 but fewer than 50 amino acid residues.

2. The method of claim 1, wherein said peptide comprises the sequence of SEQ ID NO: 3.

3. The method of claim 1, wherein said peptide comprises a sequence having at least 90% sequence identity to amino acids 319 to 330 of SEQ ID NO:1.

4. The method of claim 3, wherein said peptide comprises amino acids 319 to 330 of SEQ ID NO: 1.

5. The method of claim 1, wherein said peptide comprises a sequence having at least 90% sequence identity to amino acids 308 to 333 of SEQ ID NO: 1.

6. The method of claim 5, wherein said peptide comprises amino acids 308 to 330 of SEQ ID NO: 1.

7. The method of claim 1, wherein said peptide comprises the sequence of any one of SEQ ID NOs: 33-38.

8. The method of claim 1, wherein said peptide is capable of activating immune cells in said subject when all or a portion of said peptide is bound to an antigen-presenting molecule.

9. The method of claim 8, wherein said immune cells are cytotoxic T lymphocytes.

10. The method of claim 8, wherein said antigen-presenting molecule is an HLA molecule.

11. The method of claim 10, wherein said HLA molecule is an HLA class I molecule.

12. The method of claim 1, wherein said subject is a human.

13. The method of claim 1, wherein said peptide is conjugated to a heterologous compound.

14. The method of claim 13, wherein said heterologous compound is a therapeutic or cytotoxic agent.

15. The method of claim 1, wherein said composition is a vaccine.

16. The method of claim 15, wherein said composition comprises an adjuvant or an additional therapeutic agent.

17. The method of claim 1, wherein said method further comprises administering a cytokine or hormone therapy.

18. The method of claim 17, wherein said hormone therapy comprises androgen ablation.

19. The method of claim 1, wherein said composition comprises a pharmaceutically acceptable diluent, excipient, or carrier.

20. The method of claim 1, wherein said composition is formulated for oral, topical, sublingual, nasal, intraoptical, vaginal, or rectal administration, for administration by inhalation, or for intramuscular, intraperitoneal, intravenous, or intradermal injection.

21. The method of claim 1, wherein said composition comprises an isolated antigen-presenting cell comprising a surface-bound antigen-presenting molecule, wherein said peptide is bound to said antigen-presenting molecule.

22. The method of claim 21, wherein said antigen-presenting cell is a dendritic cell or a macrophage, and wherein said antigen-presenting molecule is an HLA class I molecule.

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