METHODS OF DIAGNOSING CERVICAL CANCER

Abstract

The invention provides reagents and methods for detecting pathogen infections in human samples. This detection utilizes specific proteins to detect the presence of pathogen proteins or abnormal expression of human proteins resulting from pathogen infections. Specific methods, compositions and kits are disclosed herein for the detection of oncogenic Human papillomavirus E6 proteins in clinical samples.

Description

CROSS-REFERENCE

[0001] This application is a continuation of U.S. patent application Ser. No. 11/650,455, filed Jan. 5, 2007, which application is a continuation of U.S. patent application Ser. No. 11/053,076, filed Feb. 7, 2005, which application: a) is a continuation-in-part of PCT Application No. PCT/US03/28508, filed Sep. 9, 2003, which application claims the benefit of: U.S. patent application Ser. No. 10/630,590, filed Jul. 29, 2003, now U.S. Pat. No. 7,312,047 issued Dec. 25, 2007; U.S. Provisional Application No. 60/490,094, filed Jul. 25, 2003; U.S. Provisional Application No. 60/450,464, filed Feb. 27, 2003 and U.S. Provisional Application No. 60/409,298, filed Sep. 9, 2002 and, b) is a continuation-in-part of U.S. patent application Ser. No. 10/630,590, filed Jul. 29, 2003, now U.S. Pat. No. 7,312,047 issued Dec. 25, 2007, which application: i) claims the benefit of U.S. Provisional Application No. 60/409,298, filed Sep. 9, 2002, and U.S. Provisional Application No. 60/450,464, filed Feb. 27, 2003; ii) is a CIP of PCT Application No. PCT/US02/24655, filed Aug. 2, 2002, which application claims the benefit of U.S. Provisional Application No. 60/309,841, filed Aug. 3, 2001, and U.S. Provisional Application No. 60/360,061, filed Feb. 25, 2002; iii) is a CIP of U.S. patent application Ser. No. 10/080,273, filed Feb. 19, 2002, which application claims the benefit of U.S. Provisional Application No. 60/269,523, filed Feb. 16, 2001; and iv) is a CIP of U.S. patent application Ser. No. 09/710,059, filed Nov. 10, 2000, all of which applications are incorporated herein by reference in their entirety for all purposes.

FIELD OF THE INVENTION

[0003] The present invention relates to detection of biological markers from pathogenic organisms, such as observed in certain human Papillomavirus (HPV) infections, and methods for using such diagnostics to identify samples that are infected and may lead to cancerous growth or other disorders. The present invention also discloses composition, methods and kits for the detection of oncogenic HPV E6 proteins in clinical samples as a cancer diagnostic.

BACKGROUND OF THE INVENTION

[0004] Cervical cancer is the second most common cancer diagnosis in women and is linked to high-risk human papillomavirus infection 99.7% of the time. Currently, 12,000 new cases of invasive cervical cancer are diagnosed in US women annually, resulting in 5,000 deaths each year. Furthermore, there are approximately 400,000 cases of cervical cancer and close to 200,000 deaths annually worldwide. Human papillomaviruses (HPVs) are one of the most common causes of sexually transmitted disease in the world. Overall, 50-75% of sexually active men and women acquire genital HPV infections at some point in their lives. An estimated 5.5 million people become infected with HPV each year in the US alone, and at least 20 million are currently infected. The more than 100 different isolates of HPV have been broadly subdivided into high-risk and low-risk subtypes based on their association with cervical carcinomas or with benign cervical lesions or dysplasias.

[0005] A number of lines of evidence point to HPV infections as the etiological agents of cervical cancers. Multiple studies in the 1980's reported the presence of HPV variants in cervical dysplasias, cancer, and in cell lines derived from cervical cancer. Further research demonstrated that the E6-E7 region of the genome from oncogenic HPV 18 is selectively retained in cervical cancer cells, suggesting that HPV infection could be causative and that continued expression of the E6-E7 region is required for maintenance of the immortalized or cancerous state. The following year, Sedman et al demonstrated that the E6-E7 genes from HPV 16 were sufficient to immortalize human keratinocytes in culture. Barbosa et al demonstrated that although E6-E7 genes from high risk HPVs could transform cell lines, the E6-E7 regions from low risk, or non-oncogenic variants such as HPV 6 and HPV 11 were unable to transform human keratinocytes. More recently, Pillai et al examined HPV 16 and 18 infection by in situ hybridization and E6 protein expression by immunocytochemistry in 623 cervical tissue samples at various stages of tumor progression and found a significant correlation between histological abnormality and HPV infection.

[0006] Current treatment paradigms are focused on the actual cervical dysplasia rather than the underlying infection with HPV. Women are screened by physicians annually for cervical dysplasia and are treated with superficial ablative techniques, including cryosurgery, laser ablation and excision. As the disease progresses, treatment options become more aggressive, including partial or radical hysterectomy, radiation or chemotherapy. A significant unmet need exists for early and accurate diagnosis of oncogenic HPV infection as well as for treatments directed at the causative HPV infection, preventing the development of cervical cancer by intervening earlier in disease progression. Human papillomaviruses characterized to date are associated with lesions confined to the epithelial layers of skin, or oral, pharyngeal, respiratory, and, most importantly, anogenital mucosae. Specific human papillomavirus types, including HPV 6 and 11, frequently cause benign mucosal lesions, whereas other types such as HPV 16, 18, and a host of other strains, are predominantly found in high-grade lesions and cancer. Individual types of human papillomaviruses (HPV) which infect mucosal surfaces have been implicated as the causative agents for carcinomas of the cervix, anus, penis, larynx and the buccal cavity, occasional periungal carcinomas, as well as benign anogenital warts. The identification of particular HPV types is used for identifying patients with premalignant lesions who are at risk of progression to malignancy. Although visible anogenital lesions are present in some persons infected with human papillomavirus, the majority of individuals with HPV genital tract infection do not have clinically apparent disease, but analysis of cytomorphological traits present in cervical smears can be used to detect HPV infection. Papanicolaou tests are a valuable screening tool, but they miss a large proportion of HPV-infected persons due to the unfortunate false positive and false negative test results. In addition, they are not amenable to worldwide testing because interpretation of results requires trained pathologists.

[0007] Conventional viral detection assays, including serologic assays, sandwich ELISA assays and growth in cell culture, are not commercially available and/or are not suitable for the diagnosis and tracking of HPV infection. Recently, several PCR (polymerase chain reaction)-based tests for HPV infections have become available. Though the tests provide the benefit of differentiating oncogenic from non-oncogenic infections, they are fairly expensive to administer and require highly trained technicians to perform PCR and/or luminometer assays. In addition, PCR has a natural false positive rate that may invoke further testing or procedures that are not required. Since the oncogenicity of HPV has been shown to be protein based, early detection of HPV DNA or RNA may lead to unnecessary medical procedures that the body's immune system may solve naturally.

[0008] The difficulties in detecting oncogenic HPV in human samples (e.g., a sample of a tumor) using traditional methods are numerous. For example, detection of E6 protein using antibodies is difficult because E6 that is made in a human cell contains a number of structural modifications, e.g., disulfide bonds and phosphate groups, that cause wild-type E6 protein made in bacterial systems, or chemically synthesized E6 peptides, to not recognize E6 protein in human cells. Further, since oncogenic E6 proteins do not share an epitope that distinguishes them from non-oncogenic E6 proteins, a single antibody cannot be used for the detection of all oncogenic E6 HPV strains.

[0009] The detection and diagnosis of disease is a prerequisite for the treatment of disease. Numerous markers and characteristics of diseases have been identified and many are used for the diagnosis of disease. Many diseases are preceded by, and are characterized by, changes in the state of the affected cells. Changes can include the expression of pathogen genes or proteins in infected cells, changes in the expression patterns of genes or proteins in affected cells, and changes in cell morphology. The detection, diagnosis, and monitoring of diseases can be aided by the accurate assessment of these changes. Inexpensive, rapid, early and accurate detection of pathogens can allow treatment and prevention of diseases that range in effect from discomfort to death.

[0010] The following publications are of interest: Munger (2002) Front. Biosci. 7:d641-9; Glaunsinger (2000) Oncogene 19:5270-80; Gardiol (1999) Oncogene 18:5487-96; Pim (1999) Oncogene 18:7403-8; Meschede (1998) J. Clin. Microbiol. 36:475-80; Kiyono (1997) Proc. Natl. Acad. Sci. 94:11612-6; and Lee (1997) Proc. Natl. Acad. Sci. 94:6670-5. In addition, the following patents and patent applications are of interest: Bleul, U.S. Pat. No. 6,322,794; Cole, U.S. Pat. No. 6,344,314; Schoolnik, U.S. Pat. No. 5,415,995; Bleul, U.S. Pat. No. 5,753,233; Cole, U.S. Pat. No. 5,876,723; Cole, U.S. Pat. No. 5,648,459; Orth, U.S. Pat. No. 6,391,539; Orth, U.S. Pat. No. 5,665,535; Schoolnik, U.S. Pat. No. 4,777,239.

SUMMARY

[0011] Methods and compositions for detection of proteins from pathogens that may result in oncogenic cellular transformation or biological abnormalities in a variety of cell types (e.g., cervical, anal, penile, throat) are provided herein. These methods and compositions can be utilized to detect the presence of pathogens including, but not limited to, those that result in diseases such as cervical cancer, penile cancer, anal cancer and throat cancer, for example. More specifically, methods, compositions and kits are described for the detection of oncogenic HPV E6 proteins in clinical samples.

[0012] One advantage of the invention is that many PDZ domain proteins, unlike antibodies, bind most or all oncogenic HPV E6 proteins from human papillomavirus, and, as such, make be used to diagnose cervical, and other, cancers.

BRIEF DESCRIPTION OF THE DRAWINGS

[0013] FIG. 1 is a bar graph showing that PDZ proteins can specifically recognize oncogenic E6 proteins from human papillomavirus. An ELISA assay was used to demonstrate that a PDZ protein (TIP-1) could specifically recognize full length E6 protein from an oncogenic strain (HPV18) but did not show any reactivity with a non-oncogenic strain (HPV11). Series 1 and Series 2 represent independent trials. E6 ab indicates that an antibody against E6 from HPV18 was used for detection instead of the PDZ protein.

[0014] FIG. 2 is a line graph showing that PDZ binding to HPV18 E6 PLs is temperature dependent. This Figure uses a modified ELISA to determine binding of the PDZ domains of TIP-1 or MAGI-1 (domain 2) to a peptide corresponding to the C-terminal 20 AA of the E6 protein from HPV18. Numbers in the legend represent independent experiments. -RT indicates that the association was carried out at room temperature. Data series lacking -RT were allowed to associate at 4° C.

[0015] FIG. 3 is a line graph showing anti-HPV18E6 antibody recognition of GST-HPV18E6 fusion protein. Day 28 sera from a Balb/c mouse immunized with HPV18E6 protein was tested for reactivity to either GST-HPV18E6 protein or GST alone.

[0016] FIG. 4 (A-D) is a panel of four line graphs showing the effect of lysate upon ability of recombinant E6 protein from HPV type 16 to bind different PDZ domains.

[0017] FIG. 5 (A-B) is an autoradiograph showing that several PDZ domains can bind and coprecipitate oncogenic E6 proteins from cells.

[0018] FIG. 6 is an autoradiograph showing the results of a western blot demonstrating detection of endogenous HPV16 E6 protein in the SiHa cervical cancer line.

[0019] FIG. 7 is an autoradiograph showing that HPV16 E6 protein can be detected in CasKi and SiHa cervical cancer cell lines by western blots, and detection is enhanced when lysates are made in the presence of Proteasome inhibitor.

[0020] FIG. 8 is a line graph showing ELISA detection of HPV16 E6 protein in SiHa and CasKi cervical cell lines.

[0021] FIG. 9 is an autoradiograph showing dot blot detection of HPV16 E6 protein in cell lysates.

[0022] FIG. 10 is an autoradiograph showing dot blot detection of endogenous HPV16 E6 protein in lysates of SiHa and CasKi cervical cell lines.

[0023] FIG. 11 is an autoradiograph of a western blot demonstrating that the E6 protein may be detected in a cervical tumor carrying HPV16.

DETAILED DESCRIPTION

I. Definitions

[0024] A "marker" or "biological marker" as used herein refers to a measurable or detectable entity in a biological sample. Examples or markers include nucleic acids, proteins, or chemicals that are present in biological samples. One example of a marker is the presence of viral or pathogen proteins or nucleic acids in a biological sample from a human source.

[0025] As used herein the term "isolated" refers to a polynucleotide, a polypeptide, an antibody, or a host cell that is in an environment different from that in which the polynucleotide, the polypeptide, the antibody, or the host cell naturally occurs. A polynucleotide, a polypeptide, an antibody, or a host cell which is isolated is generally substantially purified. As used herein, the term "substantially purified" refers to a compound (e.g., either a polynucleotide or a polypeptide or an antibody) that is removed from its natural environment and is at least 60% free, preferably 75% free, and most preferably 90% free from other components with which it is naturally associated. Thus, for example, a composition containing A is "substantially free of" B when at least 85% by weight of the total A+B in the composition is A. Preferably, A comprises at least about 90% by weight of the total of A+B in the composition, more preferably at least about 95% or even 99% by weight.

[0026] The term "biological sample" encompasses a variety of sample types obtained from an organism and can be used in a diagnostic or monitoring assay. The term encompasses blood and other liquid samples of biological origin, solid tissue samples, such as a biopsy specimen or tissue cultures or cells derived therefrom and the progeny thereof. The term encompasses samples that have been manipulated in any way after their procurement, such as by treatment with reagents, solubilization, or enrichment for certain components. The term encompasses a clinical sample, and also includes cells in cell culture, cell supernatants, cell lysates, serum, plasma, biological fluids, and tissue samples. The term "biological sample" is meant to distinguish between a sample in a clinical setting from a sample that may be a recombinant sample or derived from a recombinant sample.

[0027] A subject "infected" with HPV is a subject having cells that contain HPV. The HPV in the cells may not exhibit any other phenotype (i.e., cells infected with HPV do not have to be cancerous). In other words, cells infected with HPV may be pre-cancerous (i.e., not exhibiting any abnormal phenotype, other than those that may be associated with viral infection), or cancerous cells.

[0028] A "fusion protein" or "fusion polypeptide" as used herein refers to a composite protein, i.e., a single contiguous amino acid sequence, made up of two (or more) distinct, heterologous polypeptides that are not normally fused together in a single amino acid sequence. Thus, a fusion protein can include a single amino acid sequence that contains two entirely distinct amino acid sequences or two similar or identical polypeptide sequences, provided that these sequences are not normally found together in the same configuration in a single amino acid sequence found in nature. Fusion proteins can generally be prepared using either recombinant nucleic acid methods, i.e., as a result of transcription and translation of a recombinant gene fusion product, which fusion comprises a segment encoding a polypeptide of the invention and a segment encoding a heterologous protein, or by chemical synthesis methods well known in the art.

[0029] A "fusion protein construct" as used herein is a polynucleotide encoding a fusion protein.

[0030] An "oncogenic HPV strain" is an HPV strain that is known to cause cervical cancer as determined by the National Cancer Institute (NCI, 2001). "Oncogenic E6 proteins" are E6 proteins encoded by the above oncogenic HPV strains. Exemplary oncogenic strains are shown in Table 3. Oncogenic strains of HPV not specifically listed here, are known in the art, and may be found at the world wide website of the National Center for Biotechnology Information (NCBI).

[0031] An "oncogenic E6 protein binding partner" can be any molecule that specifically binds to an oncogenic E6 protein. Suitable oncogenic E6 protein binding partners include a PDZ domain (as described below), an antibody against an oncogenic E6 protein; other proteins that recognize oncogenic E6 protein (e.g., p53, E6-AP or E6-BP); DNA (i.e., cruciform DNA); and other partners such as aptamers or single chain antibodies from phage display). In some embodiments, detection of more than 1 oncogenic E6 protein (e.g., all oncogenic E6 proteins or E6 proteins from HPV strains 16, 18 and 33) is desirable, and, as such, an oncogenic E6 protein binding partner may be antibody that binds to these proteins, a mixture of antibodies that each bind to a different proteins. As is known in the art, such binding partners may be labeled to facilitate their detection. In general, binding partner bind E6 with an binding affinity of 10^-5 M or more, e.g., 10^-6 or more, 10^-7 or more, 10^-8 M or more (e.g., 10^-9 M, 10^-10, 10^-11, etc.).

[0032] As used herein, the term "PDZ domain" refers to protein sequence (i.e., modular protein domain) of less than approximately 90 amino acids, (i.e., about 80-90, about 70-80, about 60-70 or about 50-60 amino acids), characterized by homology to the brain synaptic protein PSD-95, the Drosophila septate junction protein Discs-Large (DLG), and the epithelial tight junction protein ZO1 (ZO1). PDZ domains are also known as Discs-Large homology repeats ("DHRs") and GLGF repeats. PDZ domains generally appear to maintain a core consensus sequence (Doyle, D. A., 1996, Cell 85: 1067-76).

[0033] PDZ domains are found in diverse membrane-associated proteins including members of the MAGUK family of guanylate kinase homologs, several protein phosphatases and kinases, neuronal nitric oxide synthase, tumor suppressor proteins, and several dystrophin-associated proteins, collectively known as syntrophins.

[0034] Exemplary PDZ domain-containing proteins and PDZ domain sequences are shown in TABLE 2 and EXAMPLE 4. The term "PDZ domain" also encompasses variants (e.g., naturally occurring variants) of the sequences (e.g., polymorphic variants, variants with conservative substitutions, and the like) and domains from alternative species (e.g. mouse, rat). Typically, PDZ domains are substantially identical to those shown in U.S. patent application Ser. No. 09/724,553, e.g., at least about 70%, at least about 80%, or at least about 90% amino acid residue identity when compared and aligned for maximum correspondence. It is appreciated in the art that PDZ domains can be mutated to give amino acid changes that can strengthen or weaken binding and to alter specificity, yet they remain PDZ domains (Schneider et al., 1998, Nat. Biotech. 17:170-5). Unless otherwise indicated, a reference to a particular PDZ domain (e.g. a MAGI-1 domain 2) is intended to encompass the particular PDZ domain and HPV E6-binding variants thereof. In other words, if a reference is made to a particular PDZ domain, a reference is also made to variants of that PDZ domain that bind oncogenic E6 protein of HPV, as described below. In this respect it is noted that the numbering of PDZ domains in a protein may change. For example, the MAGI-1 domain 2, as referenced herein, may be referenced as MAGI-1 domain 1 in other literature. As such, when a particular PDZ domain of a protein is referenced in this application, this reference should be understood in view of the sequence of that domain, as described herein, particularly in the sequence listing. Table 9, inserted before the claims, shows the relationship between the sequences of the sequence listing and the names and Genbank accession numbers for various domains, where appropriate.

[0035] As used herein, the term "PDZ protein" refers to a naturally occurring protein containing a PDZ domain. Exemplary PDZ proteins include CASK, MPP1, DLG1, DLG2, PSD95, NeDLG, TIP-33, SYN1a, TIP-43, LDP, LIM, LIMK1, LIMK2, MPP2, NOS1, AF6, PTN-4, prIL16, 41.8 kD, KIAA0559, RGS12, KIAA0316, DVL1, TIP-40, TIAM1, MINT1, MAGI-1, MAGI-2, MAGI-3, KIAA0303, CBP, MINT3, TIP-2, KIAA0561, and TIP-1.

[0036] As used herein, the term "PDZ-domain polypeptide" refers to a polypeptide containing a PDZ domain, such as a fusion protein including a PDZ domain sequence, a naturally occurring PDZ protein, or an isolated PDZ domain peptide. A PDZ-domain polypeptide may therefore be about 60 amino acids or more in length, about 70 amino acids or more in length, about 80 amino acids or more in length, about 90 amino acids or more in length, about 100 amino acids or more in length, about 200 amino acids or more in length, about 300 amino acids or more in length, about 500 amino acids or more in length, about 800 amino acids or more in length, about 1000 amino acids or more in length, usually up to about 2000 amino acids or more in length. PDZ domain peptides are usually no more than about 100 amino acids (e.g. 50-60 amino acids, 60-70 amino acids, 80-90 amino acids, or 90-100 amino acids), and encode a PDZ domain.

[0037] As used herein, the term "PL protein" or "PDZ Ligand protein" refers to a naturally occurring protein that forms a molecular complex with a PDZ-domain, or to a protein whose carboxy-terminus, when expressed separately from the full length protein (e.g., as a peptide fragment of 4-25 residues, e.g., 8, 10, 12, 14 or 16 residues), forms such a molecular complex. The molecular complex can be observed in vitro using the "A assay" or "G assay" described infra, or in vivo. Exemplary PL proteins listed in TABLES 3 and 4 are demonstrated to bind specific PDZ proteins. This definition is not intended to include anti-PDZ antibodies and the like.

[0038] As used herein, a "PL sequence" refers to the amino acid sequence of the C-terminus of a PL protein (e.g., the C-terminal 2, 3, 4, 5, 6, 7, 8, 9, 10, 12, 14, 16, 20 or 25 residues) ("C-terminal PL sequence") or to an internal sequence known to bind a PDZ domain ("internal PL sequence").

[0039] As used herein, a "PL peptide" is a peptide of having a sequence from, or based on, the sequence of the C-terminus of a PL protein. Exemplary PL peptides (biotinylated) are listed in TABLE 3.

[0040] As used herein, a "PL detector" is a protein that can specifically recognize and bind to a PL sequence.

[0041] As used herein, a "PL fusion protein" is a fusion protein that has a PL sequence as one domain, typically as the C-terminal domain of the fusion protein. An exemplary PL fusion protein is a tat-PL sequence fusion.

[0042] As used herein, the term "PL inhibitor peptide sequence" refers to PL peptide amino acid sequence that (in the form of a peptide or PL fusion protein) inhibits the interaction between a PDZ domain polypeptide and a PL peptide (e.g., in an A assay or a G assay).

[0043] As used herein, a "PDZ-domain encoding sequence" means a segment of a polynucleotide encoding a PDZ domain. In various embodiments, the polynucleotide is DNA, RNA, single stranded or double stranded.

[0044] As used herein, the terms "antagonist" and "inhibitor," when used in the context of modulating a binding interaction (such as the binding of a PDZ domain sequence to a PL sequence), are used interchangeably and refer to an agent that reduces the binding of the, e.g., PL sequence (e.g., PL peptide) and the, e.g., PDZ domain sequence (e.g., PDZ protein, PDZ domain peptide).

[0045] As used herein, the terms "agonist" and "enhancer," when used in the context of modulating a binding interaction (such as the binding of a PDZ domain sequence to a PL sequence), are used interchangeably and refer to an agent that increases the binding of the, e.g., PL sequence (e.g., PL peptide) and the, e.g., PDZ domain sequence (e.g., PDZ protein, PDZ domain peptide).

[0046] As used herein, the terms "peptide mimetic," "peptidomimetic," and "peptide analog" are used interchangeably and refer to a synthetic chemical compound that has substantially the same structural and/or functional characteristics of a PL inhibitory or PL binding peptide of the invention. The mimetic can be either entirely composed of synthetic, non-natural analogues of amino acids, or, is a chimeric molecule of partly natural peptide amino acids and partly non-natural analogs of amino acids. The mimetic can also incorporate any amount of natural amino acid conservative substitutions as long as such substitutions also do not substantially alter the mimetic's structure and/or inhibitory or binding activity. As with polypeptides of the invention which are conservative variants, routine experimentation will determine whether a mimetic is within the scope of the invention, i.e., that its structure and/or function is not substantially altered. Thus, a mimetic composition is within the scope of the invention if it is capable of binding to a PDZ domain and/or inhibiting a PL-PDZ interaction.

[0047] Polypeptide mimetic compositions can contain any combination of nonnatural structural components, which are typically from three structural groups: a) residue linkage groups other than the natural amide bond ("peptide bond") linkages; b) non-natural residues in place of naturally occurring amino acid residues; or c) residues which induce secondary structural mimicry, i.e., to induce or stabilize a secondary structure, e.g., a beta turn, gamma turn, beta sheet, alpha helix conformation, and the like.

[0048] A polypeptide can be characterized as a mimetic when all or some of its residues are joined by chemical means other than natural peptide bonds. Individual peptidomimetic residues can be joined by peptide bonds, other chemical bonds or coupling means, such as, e.g., glutaraldehyde, N-hydroxysuccinimide esters, bifunctional maleimides, N,N=-dicyclohexylcarbodiimide (DCC) or N,N=-diisopropylcarbodiimide (DIC) Linking groups that can be an alternative to the traditional amide bond ("peptide bond") linkages include, e.g., ketomethylene (e.g., --C(═O)--CH₂-- for --C(═O)--NH--), aminomethylene (CH₂--NH), ethylene, olefin (CH═CH), ether (CH₂--O), thioether (CH₂--S), tetrazole (CN₄--), thiazole, retroamide, thioamide, or ester (see, e.g., Spatola (1983) in Chemistry and Biochemistry of Amino Acids, Peptides and Proteins, Vol. 7, pp 267-357, A Peptide Backbone Modifications, Marcell Dekker, NY).

[0049] A polypeptide can also be characterized as a mimetic by containing all or some non-natural residues in place of naturally occurring amino acid residues. Nonnatural residues are well described in the scientific and patent literature; a few exemplary nonnatural compositions useful as mimetics of natural amino acid residues and guidelines are described below.

[0050] Mimetics of aromatic amino acids can be generated by replacing by, e.g., D- or L-naphylalanine; D- or L-phenylglycine; D- or L-2 thieneylalanine; D- or L-1, -2,3-, or 4-pyreneylalanine; D- or L-3 thieneylalanine; D- or L-(2-pyridinyl)-alanine; D- or L-(3-pyridinyl)-alanine; D- or L-(2-pyrazinyl)-alanine; D- or L-(4-isopropyl)-phenylglycine; D-(trifluoromethyl)-phenylglycine; D-(trifluoromethyl)-phenylalanine; D-p-fluorophenylalanine; D- or L-p-biphenylphenylalanine; K- or L-p-methoxybiphenylphenylalanine; D- or L-2-indole(alkyl)alanines; and, D- or L-alkylainines, where alkyl can be substituted or unsubstituted methyl, ethyl, propyl, hexyl, butyl, pentyl, isopropyl, iso-butyl, sec-isotyl, iso-pentyl, or a non-acidic amino acids. Aromatic rings of a nonnatural amino acid include, e.g., thiazolyl, thiophenyl, pyrazolyl, benzimidazolyl, naphthyl, furanyl, pyrrolyl, and pyridyl aromatic rings.

[0051] Mimetics of acidic amino acids can be generated by substitution by, e.g., non-carboxylate amino acids while maintaining a negative charge; (phosphono)alanine; sulfated threonine. Carboxyl side groups (e.g., aspartyl or glutamyl) can also be selectively modified by reaction with carbodiimides (R═--N--C--N--R═) such as, e.g., 1-cyclohexyl-3(2-morpholinyl-(4-ethyl)carbodiimide or 1-ethyl-3(4-azonia-4,4-dimetholpentyl)carbodiimide. Aspartyl or glutamyl can also be converted to asparaginyl and glutaminyl residues by reaction with ammonium ions.

[0052] Mimetics of basic amino acids can be generated by substitution with, e.g., (in addition to lysine and arginine) the amino acids ornithine, citrulline, or (guanidino)-acetic acid, or (guanidino)alkyl-acetic acid, where alkyl is defined above. Nitrile derivative (e.g., containing the CN-moiety in place of COOH) can be substituted for asparagine or glutamine. Asparaginyl and glutaminyl residues can be deaminated to the corresponding aspartyl or glutamyl residues.

[0053] Arginine residue mimetics can be generated by reacting arginyl with, e.g., one or more conventional reagents, including, e.g., phenylglyoxal, 2,3-butanedione, 1,2-cyclohexanedione, or ninhydrin, preferably under alkaline conditions.

[0054] Tyrosine residue mimetics can be generated by reacting tyrosyl with, e.g., aromatic diazonium compounds or tetranitromethane. N-acetylimidizol and tetranitromethane can be used to form O-acetyl tyrosyl species and 3-nitro derivatives, respectively.

[0055] Cysteine residue mimetics can be generated by reacting cysteinyl residues with, e.g., alpha-haloacetates such as 2-chloroacetic acid or chloroacetamide and corresponding amines, to give carboxymethyl or carboxyamidomethyl derivatives. Cysteine residue mimetics can also be generated by reacting cysteinyl residues with, e.g., bromo-trifluoroacetone, alpha-bromo-beta-(5-imidozoyl)propionic acid; chloroacetyl phosphate, N-alkylmaleimides, 3-nitro-2-pyridyl disulfide; methyl 2-pyridyl disulfide; p-chloromercuribenzoate; 2-chloromercuri-4 nitrophenol; or, chloro-7-nitrobenzo-oxa-1,3-diazole.

[0056] Lysine mimetics can be generated (and amino terminal residues can be altered) by reacting lysinyl with, e.g., succinic or other carboxylic acid anhydrides. Lysine and other alpha-amino-containing residue mimetics can also be generated by reaction with imidoesters, such as methyl picolinimidate, pyridoxal phosphate, pyridoxal, chloroborohydride, trinitrobenzenesulfonic acid, O-methylisourea, 2,4, pentanedione, and transamidase-catalyzed reactions with glyoxylate.

[0057] Mimetics of methionine can be generated by reaction with, e.g., methionine sulfoxide. Mimetics of proline include, e.g., pipecolic acid, thiazolidine carboxylic acid, 3- or 4-hydroxy proline, dehydroproline, 3- or 4-methylproline, or 3,3,-dimethylproline. Histidine residue mimetics can be generated by reacting histidyl with, e.g., diethylprocarbonate or para-bromophenacyl bromide.

[0058] Other mimetics include, e.g., those generated by hydroxylation of proline and lysine; phosphorylation of the hydroxyl groups of seryl or threonyl residues; methylation of the alpha-amino groups of lysine, arginine and histidine; acetylation of the N-terminal amine; methylation of main chain amide residues or substitution with N-methyl amino acids; or amidation of C-terminal carboxyl groups.

[0059] A component of a natural polypeptide (e.g., a PL polypeptide or PDZ polypeptide) can also be replaced by an amino acid (or peptidomimetic residue) of the opposite chirality. Thus, any amino acid naturally occurring in the L-configuration (which can also be referred to as the R or S, depending upon the structure of the chemical entity) can be replaced with the amino acid of the same chemical structural type or a peptidomimetic, but of the opposite chirality, generally referred to as the D-amino acid, but which can additionally be referred to as the R- or S-form.

[0060] The mimetics of the invention can also include compositions that contain a structural mimetic residue, particularly a residue that induces or mimics secondary structures, such as a beta turn, beta sheet, alpha helix structures, gamma turns, and the like. For example, substitution of natural amino acid residues with D-amino acids; N-alpha-methyl amino acids; C-alpha-methyl amino acids; or dehydroamino acids within a peptide can induce or stabilize beta turns, gamma turns, beta sheets or alpha helix conformations. Beta turn mimetic structures have been described, e.g., by Nagai (1985) Tet. Lett. 26:647-650; Feigl (1986) J. Amer. Chem. Soc. 108:181-182; Kahn (1988) J. Amer. Chem. Soc. 110:1638-1639; Kemp (1988) Tet. Lett. 29:5057-5060; Kahn (1988) J. Molec. Recognition 1:75-79. Beta sheet mimetic structures have been described, e.g., by Smith (1992) J. Amer. Chem. Soc. 114:10672-10674. For example, a type VI beta turn induced by a cis amide surrogate, 1,5-disubstituted tetrazol, is described by Beusen (1995) Biopolymers 36:181-200. Incorporation of achiral omega-amino acid residues to generate polymethylene units as a substitution for amide bonds is described by Banerjee (1996) Biopolymers 39:769-777. Secondary structures of polypeptides can be analyzed by, e.g., high-field 1H NMR or 2D NMR spectroscopy, see, e.g., Higgins (1997) J. Pept. Res. 50:421-435. See also, Hruby (1997) Biopolymers 43:219-266, Balaji, et al., U.S. Pat. No. 5,612,895.

[0061] As used herein, "peptide variants" and "conservative amino acid substitutions" refer to peptides that differ from a reference peptide (e.g., a peptide having the sequence of the carboxy-terminus of a specified PL protein) by substitution of an amino acid residue having similar properties (based on size, polarity, hydrophobicity, and the like). Thus, insofar as the compounds that are encompassed within the scope of the invention are partially defined in terms of amino acid residues of designated classes, the amino acids may be generally categorized into three main classes: hydrophilic amino acids, hydrophobic amino acids and cysteine-like amino acids, depending primarily on the characteristics of the amino acid side chain. These main classes may be further divided into subclasses. Hydrophilic amino acids include amino acids having acidic, basic or polar side chains and hydrophobic amino acids include amino acids having aromatic or apolar side chains. Apolar amino acids may be further subdivided to include, among others, aliphatic amino acids. The definitions of the classes of amino acids as used herein are as follows:

[0062] "Hydrophobic Amino Acid" refers to an amino acid having a side chain that is uncharged at physiological pH and that is repelled by aqueous solution. Examples of genetically encoded hydrophobic amino acids include Ile, Leu and Val. Examples of non-genetically encoded hydrophobic amino acids include t-BuA.

[0063] "Aromatic Amino Acid" refers to a hydrophobic amino acid having a side chain containing at least one ring having a conjugated π-electron system (aromatic group). The aromatic group may be further substituted with groups such as alkyl, alkenyl, alkynyl, hydroxyl, sulfanyl, nitro and amino groups, as well as others. Examples of genetically encoded aromatic amino acids include Phe, Tyr and Tip. Commonly encountered non-genetically encoded aromatic amino acids include phenylglycine, 2-naphthylalanine, β-2-thienylalanine, 1,2,3,4-tetrahydroisoquinoline-3-carboxylic acid, 4-chloro-phenylalanine, 2-fluorophenyl-alanine, 3-fluorophenylalanine and 4-fluorophenylalanine.

[0064] "Apolar Amino Acid" refers to a hydrophobic amino acid having a side chain that is generally uncharged at physiological pH and that is not polar. Examples of genetically encoded apolar amino acids include Gly, Pro and Met. Examples of non-encoded apolar amino acids include Cha.

[0065] "Aliphatic Amino Acid" refers to an apolar amino acid having a saturated or unsaturated straight chain, branched or cyclic hydrocarbon side chain. Examples of genetically encoded aliphatic amino acids include Ala, Leu, Val and Ile. Examples of non-encoded aliphatic amino acids include Nle.

[0066] "Hydrophilic Amino Acid" refers to an amino acid having a side chain that is attracted by aqueous solution. Examples of genetically encoded hydrophilic amino acids include Ser and Lys. Examples of non-encoded hydrophilic amino acids include Cit and hCys.

[0067] "Acidic Amino Acid" refers to a hydrophilic amino acid having a side chain pK value of less than 7. Acidic amino acids typically have negatively charged side chains at physiological pH due to loss of a hydrogen ion. Examples of genetically encoded acidic amino acids include Asp and Glu.

[0068] "Basic Amino Acid" refers to a hydrophilic amino acid having a side chain pK value of greater than 7. Basic amino acids typically have positively charged side chains at physiological pH due to association with hydronium ion. Examples of genetically encoded basic amino acids include Arg, Lys and His. Examples of non-genetically encoded basic amino acids include the non-cyclic amino acids ornithine, 2,3-diaminopropionic acid, 2,4-diaminobutyric acid and homoarginine.

[0069] "Polar Amino Acid" refers to a hydrophilic amino acid having a side chain that is uncharged at physiological pH, but which has a bond in which the pair of electrons shared in common by two atoms is held more closely by one of the atoms. Examples of genetically encoded polar amino acids include Asx and Glx. Examples of non-genetically encoded polar amino acids include citrulline, N-acetyl lysine and methionine sulfoxide.

[0070] "Cysteine-Like Amino Acid" refers to an amino acid having a side chain capable of forming a covalent linkage with a side chain of another amino acid residue, such as a disulfide linkage. Typically, cysteine-like amino acids generally have a side chain containing at least one thiol (SH) group. Examples of genetically encoded cysteine-like amino acids include Cys. Examples of non-genetically encoded cysteine-like amino acids include homocysteine and penicillamine.

[0071] As will be appreciated by those having skill in the art, the above classification are not absolute--several amino acids exhibit more than one characteristic property, and can therefore be included in more than one category. For example, tyrosine has both an aromatic ring and a polar hydroxyl group. Thus, tyrosine has dual properties and can be included in both the aromatic and polar categories. Similarly, in addition to being able to form disulfide linkages, cysteine also has apolar character. Thus, while not strictly classified as a hydrophobic or apolar amino acid, in many instances cysteine can be used to confer hydrophobicity to a peptide.

[0072] Certain commonly encountered amino acids which are not genetically encoded of which the peptides and peptide analogues of the invention may be composed include, but are not limited to, β-alanine (b-Ala) and other omega-amino acids such as 3-aminopropionic acid (Dap), 2,3-diaminopropionic acid (Dpr), 4-aminobutyric acid and so forth; α-aminoisobutyric acid (Aib); δ-aminohexanoic acid (Aha); δ-aminovaleric acid (Ava); N-methylglycine or sarcosine (MeGly); ornithine (Orn); citrulline (Cit); t-butylalanine (t-BuA); t-butylglycine (t-BuG); N-methylisoleucine (MeIle); phenylglycine (Phg); cyclohexylalanine (Cha); norleucine (Nle); 2-naphthylalanine (2-Nal); 4-chlorophenylalanine (Phe(4-Cl)); 2-fluorophenylalanine (Phe(2-F)); 3-fluorophenylalanine (Phe(3-F)); 4-fluorophenylalanine (Phe(4-F)); penicillamine (Pen); 1,2,3,4-tetrahydroisoquinoline-3-carboxylic acid (Tic); β-2-thienylalanine (Thi); methionine sulfoxide (MSO); homoarginine (hArg); N-acetyl lysine (AcLys); 2,3-diaminobutyric acid (Dab); 2,3-diaminobutyric acid (Dbu); p-aminophenylalanine (Phe(pNH₂)); N-methyl valine (MeVal); homocysteine (hCys) and homoserine (hSer). These amino acids also fall conveniently into the categories defined above.

[0073] The classifications of the above-described genetically encoded and non-encoded amino acids are summarized in TABLE 1, below. It is to be understood that TABLE 1 is for illustrative purposes only and does not purport to be an exhaustive list of amino acid residues which may comprise the peptides and peptide analogues described herein. Other amino acid residues which are useful for making the peptides and peptide analogues described herein can be found, e.g., in Fasman, 1989, CRC Practical Handbook of Biochemistry and Molecular Biology, CRC Press, Inc., and the references cited therein Amino acids not specifically mentioned herein can be conveniently classified into the above-described categories on the basis of known behavior and/or their characteristic chemical and/or physical properties as compared with amino acids specifically identified.

TABLE-US-00001 TABLE 1 Genetically Classification Encoded Genetically Non-Encoded Hydrophobic Aromatic F, Y, W Phg, Nal, Thi, Tic, Phe(4-Cl), Phe(2-F), Phe(3-F), Phe(4-F), Pyridyl Ala, Benzothienyl Ala Apolar M, G, P Aliphatic A, V, L, I t-BuA, t-BuG, MeIle, Nle, MeVal, Cha, bAla, MeGly, Aib Hydrophilic Acidic D, E Basic H, K, R Dpr, Orn, hArg, Phe(p-NH₂), DBU, A₂BU Polar Q, N, S, T, Cit, AcLys, MSO, hSer Y Cysteine-Like C Pen, hCys, p-methyl Cys

[0074] In the case of the PDZ domains described herein, a "HPV E6-binding variant" of a particular PDZ domain is a PDZ domain variant that retains HPV E6 PDZ ligand binding activity. Assays for determining whether a PDZ domain variant binds HPV E6 are described in great detail below, and guidance for identifying which amino acids to change in a specific PDZ domain to make it into a variant may be found in a variety of sources. In one example, a PDZ domain may be compared to other PDZ domains described herein and amino acids at corresponding positions may be substituted, for example. In another example, the sequence a PDZ domain of a particular PDZ protein may be compared to the sequence of an equivalent PDZ domain in an equivalent PDZ protein from another species. For example, the sequence a PDZ domain from a human PDZ protein may be compared to the sequence of other known and equivalent PDZ domains from other species (e.g., mouse, rat, etc.) and any amino acids that are variant between the two sequences may be substituted into the human PDZ domain to make a variant of the PDZ domain. For example, the sequence of the human MAGI-1 PDZ domain 2 may be compared to equivalent MAGI-1 PDZ domains from other species (e.g. mouse Genbank gi numbers 7513782 and 28526157 or other homologous sequences) to identify amino acids that may be substituted into the human MAGI-1-PDZ domain to make a variant thereof. Such method may be applied to any of the MAGI-1 PDZ domains described herein. Minimal MAGI-PDZ domain 2 sequence is provided as SEQ ID NOS:293-301. Particular variants may have 1, up to 5, up to about 10, up to about 15, up to about 20 or up to about 30 or more, usually up to about 50 amino acid changes as compared to a sequence set forth in the sequence listing. Exemplary MAGI-1 PDZ variants include the sequences set forth in SEQ ID NOS: 302-330. In making a variant, if a GFG motif is present in a PDZ domain, in general, it should not be altered in sequence.

[0075] In general, variant PDZ domain polypeptides have a PDZ domain that has at least about 70 or 80%, usually at least about 90%, and more usually at least about 98% sequence identity with a variant PDZ domain polypeptide described herein, as measured by BLAST 2.0 using default parameters, over a region extending over the entire PDZ domain.

[0076] As used herein, a "detectable label" has the ordinary meaning in the art and refers to an atom (e.g., radionuclide), molecule (e.g., fluorescein), or complex, that is or can be used to detect (e.g., due to a physical or chemical property), indicate the presence of a molecule or to enable binding of another molecule to which it is covalently bound or otherwise associated. The term "label" also refers to covalently bound or otherwise associated molecules (e.g., a biomolecule such as an enzyme) that act on a substrate to produce a detectable atom, molecule or complex. Detectable labels suitable for use in the present invention include any composition detectable by spectroscopic, photochemical, biochemical, immunochemical, electrical, optical or chemical means. Labels useful in the present invention include biotin for staining with labeled streptavidin conjugate, magnetic beads (e.g., Dynabeads®), fluorescent dyes (e.g., fluorescein, Texas red, rhodamine, green fluorescent protein, enhanced green fluorescent protein, and the like), radiolabels (e.g., ³H, ¹²⁵I, ³⁵S, ¹⁴C, or ³²P), enzymes (e.g., hydrolases, particularly phosphatases such as alkaline phosphatase, esterases and glycosidases, or oxidoreductases, particularly peroxidases such as horse radish peroxidase, and others commonly used in ELISAs), substrates, cofactors, inhibitors, chemiluminescent groups, chromogenic agents, and colorimetric labels such as colloidal gold or colored glass or plastic (e.g., polystyrene, polypropylene, latex, etc.) beads. Patents teaching the use of such labels include U.S. Pat. Nos. 3,817,837; 3,850,752; 3,939,350; 3,996,345; 4,277,437; 4,275,149; and 4,366,241. Means of detecting such labels are well known to those of skill in the art. Thus, for example, radiolabels and chemiluminescent labels may be detected using photographic film or scintillation counters, fluorescent markers may be detected using a photodetector to detect emitted light (e.g., as in fluorescence-activated cell sorting). Enzymatic labels are typically detected by providing the enzyme with a substrate and detecting the reaction product produced by the action of the enzyme on the substrate, and colorimetric labels are detected by simply visualizing the colored label. Thus, a label is any composition detectable by spectroscopic, photochemical, biochemical, immunochemical, electrical, optical or chemical means. The label may be coupled directly or indirectly to the desired component of the assay according to methods well known in the art. Non-radioactive labels are often attached by indirect means. Generally, a ligand molecule (e.g., biotin) is covalently bound to the molecule. The ligand then binds to an anti-ligand (e.g., streptavidin) molecule which is either inherently detectable or covalently bound to a signal generating system, such as a detectable enzyme, a fluorescent compound, or a chemiluminescent compound. A number of ligands and anti-ligands can be used. Where a ligand has a natural anti-ligand, for example, biotin, thyroxine, and cortisol, it can be used in conjunction with the labeled, naturally occurring anti-ligands. Alternatively, any haptenic or antigenic compound can be used in combination with an antibody. The molecules can also be conjugated directly to signal generating compounds, e.g., by conjugation with an enzyme or fluorophore. Means of detecting labels are well known to those of skill in the art. Thus, for example, where the label is a radioactive label, means for detection include a scintillation counter, photographic film as in autoradiography, or storage phosphor imaging. Where the label is a fluorescent label, it may be detected by exciting the fluorochrome with the appropriate wavelength of light and detecting the resulting fluorescence. The fluorescence may be detected visually, by means of photographic film, by the use of electronic detectors such as charge coupled devices (CCDs) or photomultipliers and the like. Similarly, enzymatic labels may be detected by providing the appropriate substrates for the enzyme and detecting the resulting reaction product. Also, simple colorimetric labels may be detected by observing the color associated with the label. It will be appreciated that when pairs of fluorophores are used in an assay, it is often preferred that they have distinct emission patterns (wavelengths) so that they can be easily distinguished.

[0077] As used herein, the term "substantially identical" in the context of comparing amino acid sequences, means that the sequences have at least about 70%, at least about 80%, or at least about 90% amino acid residue identity when compared and aligned for maximum correspondence. An algorithm that is suitable for determining percent sequence identity and sequence similarity is the FASTA algorithm, which is described in Pearson, W. R. & Lipman, D. J., 1988, Proc. Natl. Acad. Sci. U.S.A. 85: 2444. See also W. R. Pearson, 1996, Methods Enzymol. 266: 227-258. Preferred parameters used in a FASTA alignment of DNA sequences to calculate percent identity are optimized, BL50 Matrix 15: -5, k-tuple=2; joining penalty=40, optimization=28; gap penalty -12, gap length penalty=-2; and width=16.

[0078] As used herein, the terms "sandwich", "sandwich ELISA", "Sandwich diagnostic" and "capture ELISA" all refer to the concept of detecting a biological polypeptide with two different test agents. For example, a PDZ protein could be directly or indirectly attached to a solid support. Test sample could be passed over the surface and the PDZ protein could bind it's cognate PL protein(s). A labeled antibody or alternative detection reagent could then be used to determine whether a specific PL protein had bound the PDZ protein.

[0079] By "solid phase support" or "carrier" is intended any support capable of binding polypeptide, antigen or antibody. Well-known supports or carriers, include glass, polystyrene, polypropylene, polyethylene, dextran, nylon, amylases, natural and modified celluloses, polyacrylamides, agaroses, and magnetite. The nature of the carrier can be either soluble to some extent or insoluble for the purposes of the present invention. The support material can have virtually any possible structural configuration so long as the coupled molecule is capable of binding to a PDZ domain polypeptide or an E6 antibody. Thus, the support configuration can be spherical, as in a bead, or cylindrical, as in the inside surface of a test tube, or the external surface of a rod. Alternatively, the surface can be flat, such as a sheet, culture dish, test strip, etc. Those skilled in the art will know many other suitable carriers for binding antibody, peptide or antigen, or can ascertain the same by routine experimentation.

[0080] As used herein, the terms "test compound" or "test agent" are used interchangeably and refer to a candidate agent that may have enhancer/agonist, or inhibitor/antagonist activity, e.g., inhibiting or enhancing an interaction such as PDZ-PL binding. The candidate agents or test compounds may be any of a large variety of compounds, both naturally occurring and synthetic, organic and inorganic, and including polymers (e.g., oligopeptides, polypeptides, oligonucleotides, and polynucleotides), small molecules, antibodies (as broadly defined herein), sugars, fatty acids, nucleotides and nucleotide analogs, analogs of naturally occurring structures (e.g., peptide mimetics, nucleic acid analogs, and the like), and numerous other compounds. In certain embodiment, test agents are prepared from diversity libraries, such as random or combinatorial peptide or non-peptide libraries. Many libraries are known in the art that can be used, e.g., chemically synthesized libraries, recombinant (e.g., phage display libraries), and in vitro translation-based libraries. Examples of chemically synthesized libraries are described in Fodor et al., 1991, Science 251:767-773; Houghten et al., 1991, Nature 354:84-86; Lam et al., 1991, Nature 354:82-84; Medynski, 1994, Bio/Technology 12:709-710; Gallop et al., 1994, J. Medicinal Chemistry 37(9):1233-1251; Ohlmeyer et al., 1993, Proc. Natl. Acad. Sci. USA 90:10922-10926; Erb et al., 1994, Proc. Natl. Acad. Sci. USA 91:11422-11426; Houghten et al., 1992, Biotechniques 13:412; Jayawickreme et al., 1994, Proc. Natl. Acad. Sci. USA 91:1614-1618; Salmon et al., 1993, Proc. Natl. Acad. Sci. USA 90:11708-11712; PCT Publication No. WO 93/20242; and Brenner and Lerner, 1992, Proc. Natl. Acad. Sci. USA 89:5381-5383. Examples of phage display libraries are described in Scott and Smith, 1990, Science 249:386-390; Devlin et al., 1990, Science, 249:404-406; Christian, R. B., et al., 1992, J. Mol. Biol. 227:711-718); Lenstra, 1992, J. Immunol. Meth. 152:149-157; Kay et al., 1993, Gene 128:59-65; and PCT Publication No. WO 94/18318 dated Aug. 18, 1994. In vitro translation-based libraries include but are not limited to those described in PCT Publication No. WO 91/05058 dated Apr. 18, 1991; and Mattheakis et al., 1994, Proc. Natl. Acad. Sci. USA 91:9022-9026. By way of examples of nonpeptide libraries, a benzodiazepine library (see e.g., Bunin et al., 1994, Proc. Natl. Acad. Sci. USA 91:4708-4712) can be adapted for use. Peptoid libraries (Simon et al., 1992, Proc. Natl. Acad. Sci. USA 89:9367-9371) can also be used. Another example of a library that can be used, in which the amide functionalities in peptides have been permethylated to generate a chemically transformed combinatorial library, is described by Ostresh et al. (1994, Proc. Natl. Acad. Sci. USA 91:11138-11142).

[0081] The term "specific binding" refers to binding between two molecules, for example, a ligand and a receptor, characterized by the ability of a molecule (ligand) to associate with another specific molecule (receptor) even in the presence of many other diverse molecules, i.e., to show preferential binding of one molecule for another in a heterogeneous mixture of molecules. Specific binding of a ligand to a receptor is also evidenced by reduced binding of a detectably labeled ligand to the receptor in the presence of excess unlabeled ligand (i.e., a binding competition assay).

[0082] In some embodiments "proteasome inhibitors", i.e., inhibitors of the proteasome, may be used. These inhibitors, including carbobenzoxyl-leucinyl-leuciny-1 norvalinal II (MG 115) or CBZ-LLL can be purchased from chemical supply companies (e.g., Sigma). As a skilled person would understand, proteasome inhibitors are not protease inhibitors.

[0083] As used herein, a "plurality" of PDZ proteins (or corresponding PDZ domains or PDZ fusion polypeptides) has its usual meaning. In some embodiments, the plurality is at least 5, and often at least 25, at least 40, or at least 60 different PDZ proteins. In some embodiments, the plurality is selected from the list of PDZ polypeptides listed in TABLE 2. In some embodiments, the plurality of different PDZ proteins are from (i.e., expressed in) a particular specified tissue or a particular class or type of cell. In some embodiments, the plurality of different PDZ proteins represents a substantial fraction (e.g., typically at least 50%, more often at least 80%) of all of the PDZ proteins known to be, or suspected of being, expressed in the tissue or cell(s), e.g., all of the PDZ proteins known to be present in lymphocytes or hematopoetic cells. In some embodiments, the plurality is at least 50%, usually at least 80%, at least 90% or all of the PDZ proteins disclosed herein as being expressed in a particular cell.

[0084] When referring to PL peptides (or the corresponding proteins, e.g., corresponding to those listed in TABLE 3, or elsewhere herein) a "plurality" may refer to at least 5, at least 10, and often at least 16 PLs such as those specifically listed herein, or to the classes and percentages set forth supra for PDZ domains.

II. Overview

[0085] The present inventors have identified a large number of interactions between PDZ proteins and PL proteins that can play a significant role in the biological function of a variety of physiological systems. As used herein, the term "biological function" in the context of a cell, refers to a detectable biological activity normally carried out by the cell, e.g., a phenotypic change such as cell proliferation (e.g., cancer), cell activation, cytokine release, degranulation, tyrosine phosphorylation, ion (e.g., calcium) flux, metabolic activity, apoptosis, changes in gene expression, maintenance of cell structure, cell migration, adherence to a substrate, signal transduction, cell-cell interactions, and others described herein or known in the art.

[0086] Because the interactions involve proteins that are involved in diverse physiological systems (see Background section supra), the methods provided herein can be utilized to broadly or selectively diagnose inappropriate cellular phenotypes or pathogenic infections. Methods are also disclosed herein for determining whether vertebrate biological samples contain pathogenic organisms using PDZ:PL protein interactions.

[0087] As will be discussed in great detail below, the use of PDZ-PL interactions for diagnostic purposes is amenable to a number of different test formats and is not intended to be limited by the discussion herein. Diagnostic tests could be formatted for ELISA assays, as a dipstick test such as is used for pregnancy tests, as a film test that can be incubated with test sample, as a slide test that sample could be placed upon, or other such mediums. Such formats are well known in the art, and are described in U.S. Pat. Nos. 6,180,417, 4,703,017 5,591,645

III. PDZ Protein and PL Protein Interactions

[0088] TABLE 4 lists PDZ proteins and PL proteins which the current inventors have identified as binding to one another. Each page of TABLE 4 includes four columns. The columns in each section are number from left to right such that the left-most column in each section is column 1 and the right-most column in each section is column 4. Thus, the first column in each section is labeled "HPV Strain" and lists the various E6 proteins that contain the PDZ-Ligand sequences (PLs) that were examined (shown in parenthesis). This column lists C-terminal four amino acids that correspond to the carboxyl-terminal end of a 20 amino acid peptide used in this binding study. All ligands are biotinylated at the amino-terminus and partial sequences are presented in TABLE 3.

[0089] The PDZ protein (or proteins) that interact(s) with HPV E6-PL peptides are listed in the second column labeled "PDZ binding partner". This column provides the gene name for the PDZ portion of the GST-PDZ fusion that interacts with the PDZ-ligand to the left. For PDZ domain-containing proteins with multiple domains the domain number is listed to the right of the PDZ (i.e., in column 4 labeled "PDZ Domain"), and indicates the PDZ domain number when numbered from the amino-terminus to the carboxy-terminus. This table only lists interactions of a stronger nature, e.g., those that give a `4` or `5` classification in the `G assay`. "Classification" is a measure of the level of binding. In particular, it provides an absorbance value at 450 nm which indicates the amount of PL peptide bound to the PDZ protein. The following numerical values have the following meanings: `1`--A₄₅₀ nm 0-1; `2`--A₄₅₀ nm 1-2; `3`--A₄₅₀ nm 2-3; `4`--A₄₅₀ nm 3-4; `5`--A₄₅₀ nm of 4 more than 2× repeated; `0`--A₄₅₀ nm 0, i.e., not found to interact.

[0090] The third and fourth columns of TABLE 4 are merely a repetition of the columns 1 and 2 with different E6 PLs tested and the PDZs bound by them at higher affinity.

[0091] Further information regarding these PL proteins and PDZ proteins is provided in TABLES 2 and 3 and EXAMPLEs 4 and 5. In particular, TABLE 3 provides a listing of the partial amino acid sequences of peptides used in the assays. When numbered from left to right, the first column labeled "HPV strain" provides the HPV strain number used to refer to the E6 protein from that strain. The column labeled "E6 C-terminal sequence" provides the predicted sequence of the carboxy-terminal 10 amino acids of the E6 protein. The third column labeled "PL yes/no" designates whether the E6-PL sequence contains sequence elements predicted to bind to PDZ domains. The final column labeled "oncogenic" indicates that this HPV strain is known to cause cervical cancer as determined by the National Cancer Institute (NCI, 2001).

[0092] EXAMPLE 5 lists representative sequences of PDZ domains cloned into a vector (PGEX-3X vector) for production of GST-PDZ fusion proteins (Pharmacia). An extended list of PDZ domains cloned into pGEX vectors for production of GST-PDZ fusion proteins is listed in U.S. patent Ser. No. 09/724,553.

[0093] As discussed in detail herein, the PDZ proteins listed in TABLE 2 are naturally occurring proteins containing a PDZ domain. Only significant interactions are presented in this table. Thus, the present invention is particularly directed to the detection and modulation of interactions between a PDZ protein and PL protein. In a similar manner, PDZ domains that bind other pathogens can be used to diagnose infection. Additional examples of PL proteins from pathogens suitable for diagnostic applications are included in TABLE 8, but are not intended to limit the scope of the invention.

[0094] In another embodiment of the invention, cellular abnormalities or diseases can be diagnosed through the detection of imbalances in the expression levels of cellular PDZ proteins or PL proteins. Using either the PL protein or the PDZ protein in an assay derived from the `A assay` or `G assay` one can determine the protein expression levels of binding partners in a normal or abnormal cell. Differences in protein expression levels have been correlated with a number of diseases.

[0095] In certain embodiments of the invention, a PDZ protein is used to diagnose the presence of a PL protein from a pathogenic organism. Examples of pathogenic organisms with PL sequences include, but are not limited to, viruses such as Human Papillomaviruses, Hepatitus B virus, Adenovirus, Human T Cell Leukemia Virus, bacteria and fungi.

IV. Assays for Detection of PDZ Proteins or PDZ-Ligand Proteins (PL Proteins)

[0096] Two complementary assays, termed "A" and "G", were developed to detect binding between a PDZ-domain polypeptide and candidate PDZ ligand. In each of the two different assays, binding is detected between a peptide having a sequence corresponding to the C-terminus of a protein anticipated to bind to one or more PDZ domains (i.e. a candidate PL peptide) and a PDZ-domain polypeptide (typically a fusion protein containing a PDZ domain). In the "A" assay, the candidate PL peptide is immobilized and binding of a soluble PDZ-domain polypeptide to the immobilized peptide is detected (the "A" assay is named for the fact that in one embodiment an avidin surface is used to immobilize the peptide). In the "G" assay, the PDZ-domain polypeptide is immobilized and binding of a soluble PL peptide is detected (The "G" assay is named for the fact that in one embodiment a GST-binding surface is used to immobilize the PDZ-domain polypeptide). Preferred embodiments of these assays are described in detail infra. However, it will be appreciated by ordinarily skilled practitioners that these assays can be modified in numerous ways while remaining useful for the purposes of the present invention.

[0097] A. Production of Fusion Proteins Containing PDZ-Domains

[0098] GST-PDZ domain fusion proteins were prepared for use in the assays of the invention. PCR products containing PDZ encoding domains (as described supra) were subcloned into an expression vector to permit expression of fusion proteins containing a PDZ domain and a heterologous domain (i.e., a glutathione-S transferase sequence, "GST"). PCR products (i.e., DNA fragments) representing PDZ domain encoding DNA were extracted from agarose gels using the "Sephaglas" gel extraction system (Pharmacia) according to the manufacturer's recommendations.

[0099] As noted supra, PCR primers were designed to include endonuclease restriction sites to facilitate ligation of PCR fragments into a GST gene fusion vector (pGEX-3X; Pharmacia, GenBank accession no. XXU13852) in-frame with the glutathione-S transferase coding sequence. This vector contains an IPTG inducible lacZ promoter. The pGEX-3X vector was linearized using Bam HI and Eco RI or, in some cases, Eco RI or Sma I, and dephosphorylated. For most cloning approaches, double digestion with Bam HI and Eco RI was performed, so that the ends of the PCR fragments to clone were Bam HI and Eco RI. In some cases, restriction endonuclease combinations used were Bgl II and Eco RI, Bam HI and Mfe I, or Eco RI only, Sma I only, or BamHI only. When more than one PDZ domain was cloned, the DNA portion cloned represents the PDZ domains and the cDNA portion located between individual domains. Precise locations of cloned fragments used in the assays are indicated in U.S. Patent Application 60/360,061. DNA linker sequences between the GST portion and the PDZ domain containing DNA portion vary slightly, dependent on which of the above described cloning sites and approaches were used. As a consequence, the amino acid sequence of the GST-PDZ fusion protein varies in the linker region between GST and PDZ domain. Protein linker sequences corresponding to different cloning sites/approaches are shown below. Linker sequences (vector DNA encoded) are bold, PDZ domain containing gene derived sequences are in italics.

1) GST-BamHI/BamHI-PDZ domain insert

[0100] Gly--Ile-PDZ domain insert

2) GST-BamHI/BglII-PDZ domain insert

[0101] Gly-Ile-PDZ domain insert

3) GST-EcoRI/EcoRI-PDZ domain insert

[0102] Gly-Ile-Pro-Gly--Asn-PDZ domain insert

4) GST--SmaI/SmaI-PDZ domain insert

[0103] Gly-Ile-Pro-PDZ domain insert

[0104] The PDZ-encoding PCR fragment and linearized pGEX-3X vector were ethanol precipitated and resuspended in 10 ul standard ligation buffer. Ligation was performed for 4-10 hours at 7° C. using T4 DNA ligase. It will be understood that some of the resulting constructs include very short linker sequences and that, when multiple PDZ domains were cloned, the constructs included some DNA located between individual PDZ domains.

[0105] The ligation products were transformed in DH5alpha or BL-21 E. coli bacteria strains. Colonies were screened for presence and identity of the cloned PDZ domain containing DNA as well as for correct fusion with the glutathione S-transferase encoding DNA portion by PCR and by sequence analysis. Positive clones were tested in a small-scale assay for expression of the GST/PDZ domain fusion protein and, if expressing, these clones were subsequently grown up for large scale preparations of GST/PDZ fusion protein.

[0106] GST-PDZ domain fusion protein was overexpressed following addition of IPTG to the culture medium and purified. Detailed procedure of small scale and large-scale fusion protein expression and purification are described in "GST Gene Fusion System" (second edition, revision 2; published by Pharmacia). In brief, a small culture (50 mls) containing a bacterial strain (DH5a, BL21 or JM109) with the fusion protein construct was grown overnight in 2xYT media at 37° C. with the appropriate antibiotic selection (100 ug/ml ampicillin; a.k.a. 2xYT-amp). The overnight culture was poured into a fresh preparation of 2xYT-amp (typically 1 liter) and grown until the optical density (OD) of the culture was between 0.5 and 0.9 (approximately 2.5 hours). IPTG (isopropyl β-D-thiogalactopyranoside) was added to a final concentration of 1.0 mM to induce production of GST fusion protein, and culture was grown an additional 1 hour. All following steps, including centrifugation, were performed on ice or at 4° C. Bacteria were collected by centrifugation (4500×g) and resuspended in Buffer A-(50 mM Tris, pH 8.0, 50 mM dextrose, 1 mM EDTA, 200 uM phenylmethylsulfonylfluoride). An equal volume of Buffer A+ (Buffer A-, 4 mg/ml lysozyme) was added and incubated on ice for 3 min to lyse bacteria, or until lysis had begun. An equal volume of Buffer B (10 mM Tris, pH 8.0, 50 mM KCl, 1 mM EDTA. 0.5% Tween-20, 0.5% NP40 (a.k.a. IGEPAL CA-630), 200 uM phenylmethylsulfonylfluoride) was added and incubated for an additional 20 min on ice. The bacterial cell lysate was centrifuged (×20,000 g), and supernatant was run over a column containing 20 ml Sepharose CL-4B (Pharmacia) "precolumn beads," i.e., sepharose beads without conjugated glutathione that had been previously washed with 3 bed volumes PBS. The flow-through was added to glutathione Sepharose 4B (Pharmacia, cat no. 17-0765-01) previously swelled (rehydrated) in 1× phosphate-buffered saline (PBS) and incubated while rotating for 30 min-1 hr. The supernatant-Sepharose slurry was poured into a column and washed with at least 20 bed volumes of 1×PBS. GST fusion protein was eluted off the glutathione sepharose by applying 0.5-1.0 ml aliquots of 5 mM glutathione and collected as separate fractions. Concentrations of fractions were determined by reading absorbance at 280 nm and calculating concentration using the absorbance and extinction coefficient. Those fractions containing the highest concentration of fusion protein were pooled and an equal volume of 70% glycerol was added to a final concentration of 35% glycerol. Fusion proteins were assayed for size and quality by SDS gel electrophoresis (PAGE) as described in "Sambrook." Fusion protein aliquots were stored at minus 80° C. and at minus 20° C.

TABLE-US-00002 TABLE 2 PDZ Domains Used in Assays of the Invention Seq Gene Name GI or Acc# PDZ# Sequence fused to GST Construct ID 26s subunit p27 9184389 1 RDMAEAHKEAMSRKLGQSESQGPPRAFAKVNSISPGSPSIAGLQ 1 VDDEIVEFGSVNTQNFQSLHNIGSVVQHSEGALAPTILLSVSM AF6 430993 1 LRKEPEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGG 2 AADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTSSVVTL EVAKQG AIPC 12751451 1 LIRPSVISIIGLYKEKGKGLGFSIAGGRDCIRGQMGIFVKTIFPNGS 3 AAEDGRLKEGDEILDVNGIPIKGLTFQEAIHTFKQIRSGLFVLTVR TKLVSPSLTNSS AIPC 12751451 2 GISSLGRKTPGPKDRIVMEVTLNKEPRVGLGIGACCLALENSPPGI 4 YIHSLAPGSVAKMESNLSRGDQILEVNSVNVRHAALSKVHAILS KCPPGPVRLVIGRHPNPKVSEQEMDEVIARSTYQESKEANSS AIPC 12751451 3 QSENEEDVCFIVLNRKEGSGLGFSVAGGTDVEPKSITVHRVFSQG 5 AASQEGTMNRGDFLLSVNGASLAGLAHGNVLKVLHQAQLHKD ALVVIKKGMDQPRPSNSS AIPC 12751451 4 LGRSVAVHDALCVEVLKTSAGLGLSLDGGKSSVTGDGPLVIKRV 6 YKGGAAEQAGIIEAGDEILAINGKPLVGLMHFDAWNIMKSVPEG PVQLLIRKHRNSS alpha actinin-2 2773059 1 QTVILPGPAAWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGD 7 associated LIM VILAIDGFGTESMTHADGQDRIKAAEFIV protein APXL-1 13651263 1 ILVEVQLSGGAPWGFTLKGGREHGEPLVITKIEEGSKAAAVDKL 8 LAGDEIVGINDIGLSGFRQEAICLVKGSHKTLKLVVKRNSS Atrophin-1 2947231 1 REKPLFTRDASQLKGTFLSTTLKKSNMGFGFTIIGGDEPDEFLQV 9 Interacting KSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQS Protein VPIGQSVNLVLCRGYP Atrophin-1 2947231 2 LSGATQAELMTLTIVKGAQGFGFTIADSPTGQRVKQILDIQGCPG 10 Interacting LCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGSETSLIIHRGGFF Protein Atrophin-1 2947231 3 HYKELDVHLRRMESGFGFRILGGDEPGQPILIGAVIAMGSADRD 11 Interacting GRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLTVR Protein RKVLCG Atrophin-1 2947231 4 EGRGISSHSLQTSDAVIHRKENEGFGFVIISSLNRPESGSTITVPHKI 12 Interacting GRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIKDAG Protein LSVTLRIIPQEEL Atrophin-1 2947231 5 LSDYRQPQDFDYFTVDMEKGAKGFGFSIRGGREYKMDLYVLRL 13 Interacting AEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSGGRRV Protein RLLLKRGTGQ Atrophin-1 2947231 6 HESVIGRNPEGQLGFELKGGAENGQFPYLGEVKPGKVAYESGSK 14 Interacting LVSEELLLEVNETPVAGLTIRDVLAVIKHCKDPLRLKCVKQGGIHR Protein CARD11 12382772 1 NLMFRKFSLERPFRPSVTSVGHVRGPGPSVQHTTLNGDSLTSQLT 15 LLGGNARGSFVHSVKPGSLAEKAGLREGHQLLLLEGCIRGERQS VPLDTCTKEEAHWTIQRCSGPVTLHYKVNHEGYRKLV CARD14 13129123 1 ILSQVTMLAFQGDALLEQISVIGGNLTGIFIHRVTPGSAADQMAL 16 RPGTQIVMVDYEASEPLFKAVLEDTTLEEAVGLLRRVDGFCCLS VKVNTDGYKRL CASK 3087815 1 TRVRLVQFQKNTDEPMGITLKMNELNHCIVARIMHGGMIHRQG 17 TLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSYRT QS Connector 3930780 1 LEQKAVLEQVQLDSPLGLEIHTTSNCQHFVSQVDTQVPTDSRLQI 18 Enhancer QPGDEVVQINEQVVVGWPRKNMVRELLREPAGLSLVLKKIPIP Cytohesin 3192908 1 QRKLVTVEKQDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDS 19 Binding Protein PAHCAGLQAGDVLANINGVSTEGFTYKQVVDLIRSSGNLLTIETL NG Densin 180 16755892 1 RCLIQTKGQRSMDGYPEQFCVRIEKNPGLGFSISGGISGQGNPFKP 20 SDKGIFVTRVQPDGPASNLLQPGDKILQANGHSFVHMEHEKAVL LLKSFQNTVDLVIQRELTV DLG1 475816 1 IQVNGTDADYEYEEITLERGNSGLGFSIAGGTDNPHIGDDSSIFIT 21 KIITGGAAAQDGRLRVNDCILQVNEVDVRDVTHSKAVEALKEA GSIVRLYVKRRN DLG1 475816 2 IQLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKL 22 QIGDKLLAVNNVCLEEVTHEEAVTALKNTSDFVYLKVAKPTSM YMNDGN DLG1 475816 3 ILHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDRIIS 23 VNSVDLRAASHEQAAAALKNAGQAVTIVAQYRPEEYSR DLG2 12736552 1 ISYVNGTEIEYEFEEITLERGNSGLGFSIAGGTDNPHIGDDPGIFIT 24 KIIPGGAAAEDGRLRVNDCILRVNEVDVSEVSHSKAVEALKEAG SIVRLYVRRR DLG2 12736552 2 ISVVEIKLFKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQ 25 KDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVG NPTTI DLG2 12736552 3 IWAVSLEGEPRKVVLHKGSTGLGFNIVGGEDGEGIFVSFILAGGP 26 ADLSGELQRGDQILSVNGIDLRGASHEQAAAALKGAGQTVTIIA QYQPED DLG5 3650451 1 GIPYVEEPRHVKVQKGSEPLGISIVSGEKGGIYVSKVTVGSIAHQ 27 AGLEYGDQLLEFNGINLRSATEQQARLIIGQQCDTITILAQYNPH VHQLRNSSZLTD DLG5 3650451 2 GILAGDANKKTLEPRVVFIKKSQLELGVHLCGGNLHGVFVAEVE 28 DDSPAKGPDGLVPGDLILEYGSLDVRNKTVEEVYVEMLKPRDG VRLKVQYRPEEFIVTD DLG6, splice 14647140 1 PTSPEIQELRQMLQAPHFKALLSAHDTIAQKDFEPLLPPLPDNIPE 29 variant 1 SEEAMRIVCLVKNQQPLGATIKRHEMTGDILVARIIHGGLAERSG LLYAGDKLVEVNGVSVEGLDPEQVIHILAMSRGTIMFKVVPVSD PPVNSS DLG6, splice AB053303 1 PTSPEIQELRQMLQAPHFKGATIKRHEMTGDILVARIIHGGLAERS 30 variant 2 GLLYAGDKLVEVNGVSVEGLDPEQVIHILAMSRGTIMFKVVPVS DPPVNSS DVL1 2291005 1 LNIVTVTLNMERHHFLGISIVGQSNDRGDGGIYIGSIMKGGAVAA 31 DGRIEPGDMLLQVNDVNFENMSNDDAVRVLREIVSQTGPISLTV AKCW DVL2 2291007 1 LNIITVTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAA 32 DGRIEPGDMLLQVNDMNFENMSNDDAVRVLRDIVHKPGPIVLT VAKCWDPSPQNS DVL3 6806886 1 IITVTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADG 33 RIEPGDMLLQVNEINFENMSNDDAVRVLREIVHKPGPITLTVAKC WDPSP ELFIN 1 2957144 1 TTQQIDLQGPGPWGFRLVGRKDFEQPLAISRVTPGSKAALANLCI 34 GDVITAIDGENTSNMTHLEAQNRIKGCTDNLTLTVARSEHKVWS PLV ENIGMA 561636 1 IFMDSFKVVLEGPAPWGFRLQGGKDFNVPLSISRLTPGGKAAQA 35 GVAVGDWVLSIDGENAGSLTHIEAQNKIRACGERLSLGLSRAQPV ERBIN 8923908 1 QGHELAKQEIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVT 36 RVQPEGPASKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTV ELIIVREVSS EZRIN Binding 3220018 1 ILCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAG 37 Protein 50 DRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPEFIVTD EZRIN Binding 3220018 2 IRLCTMKKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQ 38 Protein 50 DRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDRETDEFF MNSS FLJ00011 10440352 1 KNPSGELKTVTLSKMKQSLGISISGGIESKVQPMVKIEKIFPGGAA 39 FLSGALQAGFELVAVDGENLEQVTHQRAVDTIRRAYRNKAREP MELVVRVPGPSPRPSPSD FLJ11215 11436365 1 EGHSHPRVVELPKTEEGLGFNIMGGKEQNSPIYISRIIPGGIADRH 40 GGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAQGKVKLVVRY TPKVLEEME FLJ12428 BC012040 1 PGAPYARKTFTIVGDAVGWGFVVRGSKPCHIQAVDPSGPAAAA 41 GMKVCQFVVSVNGLNVLHVDYRTVSNLILTGPRTIVMEVMEEL EC FLJ12615 10434209 1 GQYGGETVKIVRIEKARDIPLGATVRNEMDSVIISRIVKGGAAEK 42 SGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFVLIPSQ QIKPPPA FLJ20075 7019938 1 ILAHVKGIEKEVNVYKSEDSLGLTITDNGVGYAFIKRIKDGGVID 43 SVKTICVGDHIESINGENIVGWRHYDVAKKLKELKKEELFTMKLI EPKKAFEI FLJ21687 10437836 1 KPSQASGHFSVELVRGYAGFGLTLGGGRDVAGDTPLAVRGLLK 44 DGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIRAGGPQLH LVIRRPLETHPGKPRGV FLJ31349 AK055911 1 PVMSQCACLEEVHLPNIKPGEGLGMYIKSTYDGLHVITGTTENSP 45 ADRSQKIHAGDEVIQVNQQTVVGWQLKNLVKKLRENPTGVVLL LKKRPTGSFNFTPEFIVTD FLJ32798 AK057360 1 LDDEEDSVKIIRLVKNREPLGATIKKDEQTGAIIVARIMRGGAAD 46 RSGLIHVGDELREVNGIPVEDKRPEEIIQILAQSQGAITFKIIPGSKE ETPSNSS GRIP 1 4539083 1 VVELMKKEGTTLGLTVSGGIDKDGKPRVSNLRQGGIAARSDQL 47 DVGDYIKAVNGINLAKFRHDEIISLLKNVGERVVLEVEYE GRIP 1 4539083 2 RSSVIFRTVEVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITCVRP 48 GGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEAA LLIEYDVSVMDSVATASGNSS GRIP 1 4539083 3 HVATASGPLLVEVAKTPGASLGVALTTSMCCNKQVIVIDKIKSA 49 SIADRCGALHVGDHILSIDGTSMEYCTLAEATQFLANTTDQVKL EILPHHQTRLALKGPNSS GRIP 1 4539083 4 TETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAER 50 CGVLQIGDRVMAINGIPTEDSTFEEASQLLRDSSITSKVTLEIEFD VAES GRIP 1 4539083 5 AESVIPSSGTFHVKLPKKHNVELGITISSPSSRKPGDPLVISDIKKG 51 SVAHRTGTLELGDKLLAIDNIRLDNCSMEDAVQILQQCEDLVKL KIRKDEDNSD GRIP 1 4539083 6 IYTVELKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGD 52 RILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTDAQSA GRIP 1 4539083 7 IMSPTPVELHKVTLYKDSDMEDFGFSVADGLLEKGVYVKNIRPA 53 GPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLV ISRNPLA GTPase 2389008 1 SRGCETRELALPRDGQGRLGFEVDAEGFVTHVERFTFAETAGLR 54 Activating PGARLLRVCGQTLPSLRPEAAAQLLRSAPKVCVTVLPPDESGRP Enzyme Guanine 6650765 1 AKAKWRQVVLQKASRESPLQFSLNGGSEKGFGIFVEGVEPGSKA 55 Exchange Factor ADSGLKRGDQIMEVNGQNFENITFMKAVEILRNNTHLALTVKTN IFVFKEL HEMBA 10436367 1 LENVIAKSLLIKSNEGSYGFGLEDKNKVPIIKLVEKGSNAEMAGM 56 1000505 EVGKKIFAINGDLVFMRPFNEVDCFLKSCLNSRKPLRVLVSTKP HEMBA 10436367 2 PRETVKIPDSADGLGFQIRGFGPSVVHAVGRGTVAAAAGLHPGQ 57 1000505 CIIKVNGINVSKETHASVIAHVTACRKYRRPTKQDSIQ HEMBA 7022001 1 EDFCYVFTVELERGPSGLGMGLIDGMHTHLGAPGLYIQTLLPGSP 58 1003117 AAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHGGKKMRFLV AKSDVETAKKI HTRA3 AY040094 1 LTEFQDKQIKDWKKRFIGIRMRTITPSLVDELKASNPDFPEVSSGI 59 YVQEVAPNSPSQRGGIQDGDIIVKVNGRPLVDSSELQEAVLTESP LLLEVRRGNDDLLFSNSS HTRA4 AL576444 1 HKKYLGLQMLSLTVPLSEELKMHYPDFPDVSSGVYVCKVVEGT 60 AAQSSGLRDHDVIVNINGKPITTTTDVVKALDSDSLSMAVLRGK DNLLLTVNSS INADL 2370148 1 IWQIEYIDIERPSTGGLGFSVVALRSQNLGKVDIFVKDVQPGSVA 61 DRDQRLKENDQILAINHTPLDQNISHQQAIALLQQTTGSLRLIVA REPVHTKSSTSSSE INADL 2370148 2 PGHVEEVELINDGSGLGFGIVGGKTSGVVVRTIVPGGLADRDGR 62 LQTGDHILKIGGTNVQGMTSEQVAQVLRNCGNSS INADL 2370148 3 PGSDSSLFETYNVELVRKDGQSLGIRIVGYVGTSHTGEASGIYVK 63 SIIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEVLRNAG QVVHLTLVRRKTSSSTSRIHRD INADL 2370148 4 NSDDAELQKYSKLLPIHTLRLGVEVDSFDGHHYISSIVSGGPVDT 64 LGLLQPEDELLEVNGMQLYGKSRREAVSFLKEVPPPFTLVCCRR

LFDDEAS INADL 2370148 5 LSSPEVKIVELVKDCKGLGFSILDYQDPLDPTRSVIVIRSLVADGV 65 AERSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKAVPPGLVHLGI CKPLVEFIVTD INADL 2370148 6 PNFSHWGPPRIVEIFREPNVSLGISIVVGQTVIKRLKNGEELKGIFI 66 KQVLEDSPAGKTNALKTGDKILEVSGVDLQNASHSEAVEAIKNA GNPVVFIVQSLSSTPRVIPNVHNKANSS INADL 2370148 7 PGELHIIELEKDKNGLGLSLAGNKDRSRMSIFVVGINPEGPAAAD 67 GRMRIGDELLEINNQILYGRSHQNASAIIKTAPSKVKLVFIRNEDA VNQMANSS INADL 2370148 8 PATCPIVPGQEMIIEISKGRSGLGLSIVGGKDTPLNAIVIHEVYEEG 68 AAARDGRLWAGDQILEVNGVDLRNSSHEEAITALRQTPQKVRL VVY KIAA0147 1469875 1 ILTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARA 69 GVRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWR ERMVEPENAEFIVTD KIAA0147 1469875 2 PLRQRHVACLARSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEG 70 GAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAASPTIAL LLEREAGG KIAA0147 1469875 3 ILEGPYPVEEIRLPRAGGPLGLSIVGGSDHSSHPFGVQEPGVFISK 71 VLPRGLAARSGLRVGDRILAVNGQDVRDATHQEAVSALLRPCL ELSLLVRRDPAEFIVTD KIAA0147 1469875 4 RELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGA 72 AGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVL VCDGFEASTDAALEVS KIAA0303 2224546 1 PHQPIVIHSSGKNYGFTIRAIRVYVGDSDIYTVHHIVWNVEEGSP 73 ACQAGLKAGDLITHINGEPVHGLVHTEVIELLLKSGNKVSITTTPF KIAA0313 7657260 1 ILACAAKAKRRLMTLTKPSREAPLPFILLGGSEKGFGIFVDSVDS 74 GSKATEAGLKRGDQILEVNGQNFENIQLSKAMEILRNNTHLSITV KTNLFVFKELLTNSS KIAA0316 6683123 1 IPPAPRKVEMRRDPVLGFGFVAGSEKPVVVRSVTPGGPSEGKLIP 75 GDQIVMINDEPVSAAPRERVIDLVRSCKESILLTVIQPYPSPK KIAA0340 2224620 1 LNKRTTMPKDSGALLGLKVVGGKMTDLGRLGAFITKVKKGSLA 76 DVVGHLRAGDEVLEWNGKPLPGATNEEVYNIILESKSEPQVEIIV SRPIGDIPRIHRD KIAA0380 2224700 1 QRCVIIQKDQHGFGFTVSGDRIVLVQSVRPGGAAMKAGVKEGD 77 RIIKVNGTMVTNSSHLEVVKLIKSGAYVALTLLGSS KIAA0382 7662087 1 ILVQRCVIIQKDDNGFGLTVSGDNPVFVQSVKEDGAAMRAGVQ 78 TGDRIIKVNGTLVTHSNHLEVVKLIKSGSYVALTVQGRPPGNSS KIAA0440 2662160 1 SVEMTLRRNGLGQLGFHVNYEGIVADVEPYGYAWQAGLRQGS 79 RLVEICKVAVATLSHEQMIDLLRTSVTVKVVIIPPHD KIAA0545 14762850 1 LKVMTSGWETVDMTLRRNGLGQLGFHVKYDGTVAEVEDYGFA 80 WQAGLRQGSRLVEICKVAVVTLTHDQMIDLLRTSVTVKVVIIPPF EDGTPRRGW KIAA0559 3043641 1 HYIFPHARIKITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIA 81 KILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQSG EAEICVRLDLNML KIAA0561 3043645 1 LCGSLRPPIVIHSSGKKYGFSLRAIRVYMGDSDVYTVHHVVWSV 82 EDGSPAQEAGLRAGDLITHINGESVLGLVHMDVVELLLKSGNKI SLRTTALENTSIKVG KIAA0613 3327039 1 SYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQG 83 DLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLTLQKSKNSS KIAA0751 12734165 1 ISRDSGAMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHL 84 RPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELVVSRPIAIH RD KIAA0807 3882334 1 ISALGSMRPPIIIHRAGKKYGFTLRAIRVYMGDSDVYTVHHMVW 85 HVEDGGPASEAGLRQGDLITHVNGEPVHGLVHTEVVELILKSGN KVAISTTPLENSS KIAA0858 4240204 1 FSDMRISINQTPGKSLDFGFTIKWDIPGIFVASVEAGSPAEFSQLQ 86 VDDEIIAINNTKFSYNDSKEWEEAMAKAQETGHLVMDVRRYGK AGSPE KIAA0902 4240292 1 QSAHLEVIQLANIKPSEGLGMYIKSTYDGLHVITGTTENSPADRC 87 KKIHAGDEVIQVNHQTVVGWQLKNLVNALREDPSGVILTLKKR PQSMLTSAPA KIAA0967 4589577 1 ILTQTLIPVRHTVKIDKDTLLQDYGFHISESLPLTVVAVTAGGSAH 88 GKLFPGDQILQMNNEPAEDLSWERAVDILREAEDSLSITVVRCTS GVPKSSNSS KIAA0973 4589589 1 GLRSPITIQRSGKKYGFTLRAIRVYMGDTDVYSVHHIVWHVEEG 89 GPAQEAGLCAGDLITHVNGEPVHGMVHPEVVELILKSGNKVAV TTTPFE KIAA1095 5889526 1 QGEETKSLTLVLHRDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKI 90 VDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKTAKEPI VVQVLRRTPRTKMFTP KIAA1095 5889526 2 QEMDREELELEEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEI 91 DPNSIAAKDGRIREGDRIIQINGIEVQNREEAVALLTSEENKNFSL LIARPELQLD KIAA1202 6330421 1 RSFQYVPVQLQGGAPWGFTLKGGLEHCEPLTVSKIEDGGKAALS 92 QKMRTGDELVNINGTPLYGSRQEALILIKGSFRILKLIVRRRNAPVS KIAA1222 6330610 1 ILEKLELFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTE 93 GGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNV RFVIGREKPGQVS KIAA1284 6331369 1 KDVNVYVNPKKLTVIKAKEQLKLLEVLVGIIHQTKWSWRRTGK 94 QGDGERLVVHGLLPGGSAMKSGQVLIGDVLVAVNDVDVTTENI ERVLSCIPGPMQVKLTFENAYDVKRET KIAA1389 7243158 1 TRGCETVEMTLRRNGLGQLGFHVNFEGIVADVEPFGFAWKAGL 95 RQGSRLVEICKVAVATLTHEQMIDLLRTSVTVKVVIIQPHDDGSP RR KIAA1415 7243210 1 VENILAKRLLILPQEEDYGFDIEEKNKAVVVKSVQRGSLAEVAG 96 LQVGRKIYSINEDLVFLRPFSEVESILNQSFCSRRPLRLLVATKAK EIIKIP KIAA1526 5817166 1 PDSAGPGEVRLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPG 97 SLAEKEGLRVGDQILRVNDKSLARVTHAEAVKALKGSKKLVLS VYSAGRIPGGYVTNH KIAA1526 5817166 2 LQGGDEKKVNLVLGDGRSLGLTIRGGAEYGLGIYITGVDPGSEA 98 EGSGLKVGDQILEVNWRSFLNILHDEAVRLLKSSRHLILTVKDV GRLPHARTTVDE KIAA1526 5817166 3 WTSGAHVHSGPCEEKCGHPGHRQPLPRIVTIQRGGSAHNCGQLK 99 VGHVILEVNGLTLRGKEHREAARIIAEAFKTKDRDYIDFLDSL KIAA1620 10047316 1 ELRRAELVEIIVETEAQTGVSGINVAGGGKEGIFVRELREDSPAA 100 RSLSLQEGDQLLSARVFFENFKYEDALRLLQCAEPYKVSFCLKR TVPTGDLALRP KIAA1634 10047344 1 PSQLKGVLVRASLKKSTMGFGFTIIGGDRPDEFLQVKNVLKDGP 101 AAQDGKIAPGDVIVDINGNCVLGHTHADVVQMFQLVPVNQYVN LTLCRGYPLPDDSED KIAA1634 10047344 2 ASSGSSQPELVTIPLIKGPKGFGFAIADSPTGQKVKMILDSQWCQ 102 GLQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGADVPLLILRG GPPSPTKTAKM KIAA1634 10047344 3 LYEDKPPLTNTFLISNPRTTADPRILYEDKPPNTKDLDVFLRKQES 103 GFGFRVLGGDGPDQSIYIGAIIPLGAAEKDGRLRAADELMCIDGIP VKGKSHKQVLDLMTTAARNGHVLLTVRRKIFYGEKQPEDDSGS PGIHRELT KIAA1634 10047344 4 PAPQEPYDVVLQRKENEGFGFVILTSKNKPPPGVIPHKIGRVIEGS 104 PADRCGKLKVGDHISAVNGQSIVELSHDNIVQLIKDAGVTVTLT VIAEEEHHGPPS KIAA1634 10047344 5 QNLGCYPVELERGPRGFGFSLRGGKEYNMGLFILRLAEDGPAIK 105 DGRIHVGDQIVEINGEPTQGITHTRAIELIQAGGNKVLLLLRPGTG LIPDHGLA KIAA1719 1267982 0 ITVVELIKKEGSTLGLTISGGTDKDGKPRVSNLRPGGLAARSDLL 106 NIGDYIRSVNGIHLTRLRHDEIITLLKNVGERVVLEVEY KIAA1719 1267982 1 ILDVSLYKEGNSFGFVLRGGAHEDGHKSRPLVLTYVRPGGPADR 107 EGSLKVGDRLLSVDGIPLHGASHATALATLRQCSHEALFQVEYD VATP KIAA1719 1267982 2 IHTVANASGPLMVEIVKTPGSALGISLTTTSLRNKSVITIDRIKPAS 108 VVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLASISEKVRLEIL PVPQSQRPL KIAA1719 1267982 3 IQIVHTETTEVVLCGDPLSGFGLQLQGGIFATETLSSPPLVCFIEPD 109 SPAERCGLLQVGDRVLSINGIATEDGTMEEANQLLRDAALAHKV VLEVEFDVAESV KIAA1719 1267982 4 IQFDVAESVIPSSGTFHVKLPKKRSVELGITISSASRKRGEPLIISDI 110 KKGSVAHRTGTLEPGDKLLAIDNIRLDNCPMEDAVQILRQCEDL VKLKIRKDEDN KIAA1719 1267982 5 IQTTGAVSYTVELKRYGGPLGITISGTEEPFDPIVISGLTKRGLAER 111 TGAIHVGDRILAINNVSLKGRPLSEAIHLLQVAGETVTLKIKKQL DR KIAA1719 1267982 6 ILEMEELLLPTPLEMHKVTLHKDPMRHDFGFSVSDGLLEKGVYV 112 HTVRPDGPAHRGGLQPFDRVLQVNHVRTRDFDCCLAVPLLAEA GDVLELIISRKPHTAHSS LIM Mystique 12734250 1 MALTVDVAGPAPWGFRITGGRDFHTPIMVTKVAERGKAKDADL 113 RPGDIIVAINGESAEGMLHAEAQSKIRQSPSPLRLQLDRSQATSPG QT LIM Protein 3108092 1 SNYSVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKAAQANV 114 RIGDVVLSIDGINAQGMTHLEAQNKIKGCTGSLNMTLQRAS LIMK1 4587498 1 TLVEHSKLYCGHCYYQTVVTPVIEQILPDSPGSHLPHTVTLVSIPA 115 SSHGKRGLSVSIDPPHGPPGCGTEHSHTVRVQGVDPGCMSPDVK NSIHVGDRILEINGTPIRNVPLDEIDLLIQETSRLLQLTLEHD LIMK2 1805593 1 PYSVTLISMPATTEGRRGFSVSVESACSNYATTVQVKEVNRMHIS 116 PNNRNAIHPGDRILEINGTPVRTLRVEEVEDAISQTSQTLQLLIEHD LIM-RIL 1085021 1 IHSVTLRGPSPWGFRLVGRDFSAPLTISRVHAGSKASLAALCPGD 117 LIQAINGESTELMTHLEAQNRIKGCHDHLTLSVSRPE LU-1 U52111 1 VCYRTDDEEDLGIYVGEVNPNSIAAKDGRIREGDRIIQINGVDVQ 118 NREEAVAILSQEENTNISLLVARPESQLA MAGI1 3370997 1 IQKKNHWTSRVHECTVKRGPQGELGVTVLGGAEHGEFPYVGAV 119 AAVEAAGLPGGGEGPRLGEGELLLEVQGVRVSGLPRYDVLGVI DSCKEAVTFKAVRQGGR MAGI1 3370997 2 PSELKGKFIHTKLRKSSRGFGFTVVGGDEPDEFLQIKSLVLDGPA 120 ALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLE LCRGYPLPFDPDDPN MAGI1 3370997 3 PATQPELITVHIVKGPMGFGFTIADSPGGGGQRVKQIVDSPRCRG 121 LKEGDLIVEVNKKNVQALTHNQVVDMLVECPKGSEVTLLVQRG GNLS MAGI1 3370997 4 PDYQEQDIFLWRKETGFGFRILGGNEPGEPIYIGHIVPLGAADTD 122 GRLRSGDELICVDGTPVIGKSHQLVVQLMQQAAKQGHVNLTVR RKVVFAVPKTENSS MAGI1 3370997 5 GVVSTVVQPYDVEIRRGENEGFGFVIVSSVSRPEAGTTFAGNAC 123 VAMPHKIGRIIEGSPADRCGKLKVGDRILAVNGCSITNKSHSDIV NLIKEAGNTVTLRIIPGDESSNA MAGI1 3370997 6 QATQEQDFYTVELERGAKGFGFSLRGGREYNMDLYVLRLAEDG 124 PAERCGKMRIGDEILEINGETTKNMKHSRAIELIKNGGRRVRLFL KRG MGC5395 BC012477 1 PAKMEKEETTRELLLPNWQGSGSHGLTIAQRDDGVFVQEVTQN 125 SPAARTGVVKEGDQIVGATIYFDNLQSGEVTQLLNTMGHHTVG LKLHRKGDRSPNSS MINT1 2625024 1 SENCKdVFIEKQKGEILGVVIVESGWGSILPTVIIANMMHGGPAE 126 KSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQSRVKLNIVR CPPVNSS MINT1 2625024 2 LRCPPVTTVLIRRPDLRYQLGFSVQNGIICSLMRGGIAERGGVRV 127 GHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKTMPAAMYRLLN SS MINT3 3169808 1 LSNSDNCREVHLEKRRGEGLGVALVESGWGSLLPTAVIANLLHG 128 GPAERSGALSIGDRLTAINGTSLVGLPLAACQAAVRETKSQTSVT LSIVHCPPVTTAIM MINT3 3169808 2 LVHCPPVTTAIIHRPHAREQLGFCVEDGIICSLLRGGIAERGGIRV 129 GHRIIEINGQSVVATPHARIIELLTEAYGEVHIKTMPAATYRLLTG MPP1 189785 1 RKVRLIQFEKVTEEPMGITLKLNEKQSCTVARILHGGMIHRQGSL 130 HVGDEILEINGTNVTNHSVDQLQKAMKETKGMISLKVIPNQ

MPP2 939884 1 PVPPDAVRMVGIRKTAGEHLGVTFRVEGGELVIARILHGGMVAQ 131 QGLLHVGDIIKEVNGQPVGSDPRALQELLRNASGSVILKILPNYQ MUPP1 2104784 1 QGRHVEVFELLKPPSGGLGFSVVGLRSENRGELGIFVQEIQEGSV 132 AHRDGRLKETDQILAINGQALDQTITHQQAISILQKAKDTVQLVI ARGSLPQLV MUPP1 2104784 2 PVHWQHMETIELVNDGSGLGFGIIGGKATGVIVKTILPGGVADQ 133 HGRLCSGDHILKIGDTDLAGMSSEQVAQVLRQCGNRVKLMIAR GAIEERTAPT MUPP1 2104784 3 QESETFDVELTKNVQGLGITIAGYIGDKKLEPSGIFVKSITKSSAV 134 EHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLM RRGMKQEA MUPP1 2104784 4 LNYEIVVAHVSKFSENSGLGISLEATVGHHFIRSVLPEGPVGHSG 135 KLFSGDELLEVNGITLLGENHQDVVNILKELPIEVTMVCCRRTVP PT MUPP1 2104784 5 WEAGIQHIELEKGSKGLGFSILDYQDPIDPASTVIIIRSLVPGGIAE 136 KDGRLLPGDRLMFVNDVNLENSSLEEAVEALKGAPSGTVRIGVA KPLPLSPEE MUPP1 2104784 6 RNVSKESFERTINIAKGNSSLGMTVSANKDGLGMIVRSIIHGGAIS 137 RDGRIAIGDCILSINEESTISVTNAQARAMLRRHSLIGPDIKITYVP AEHLEE MUPP1 2104784 7 LNWNQPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFI 138 KHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRK AGNPVVFMVQSIINRPRKSPLPSLL MUPP1 2104784 8 LTGELHMIELEKGHSGLGLSLAGNKDRSRMSVFIVGIDPNGAAG 139 KDGRLQIADELLEINGQILYGRSHQNASSIIKCAPSKVKIIFIRNKD AVNQ MUPP1 2104784 9 LSSFKNVQHLELPKDQGGLGIAISEEDTLSGVIIKSLTEHGVAATD 140 GRLKVGDQILAVDDEIVVGYPIEKFISLLKTAKMTVKLTIHAENP DSQ MUPP1 2104784 10 LPGCETTIEISKGRTGLGLSIVGGSDTLLGAIIIHEVYEEGAACKD 141 GRLWAGDQILEVNGIDLRKATHDEAINVLRQTPQRVRLTLYRDE APYKE MUPP1 2104784 11 KEEEVCDTLTIELQKKPGKGLGLSIVGKRNDTGVFVSDIVKGGIA 142 DADGRLMQGDQILMVNGEDVRNATQEAVAALLKCSLGTVTLE VGRIKAGPFHS MUPP1 2104784 12 LQGLRTVEMKKGPTDSLGISIAGGVGSPLGDVPIFIAMMHPTGVA 143 AQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLKNASGSIEMQVV AGGDVSV MUPP1 2104784 13 LGPPQCKSITLERGPDGLGFSIVGGYGSPHGDLPIYVKTVFAKGA 144 ASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMV LS NeDLG 10863920 1 IQYEEIVLERGNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAM 145 DGRLGVNDCVLRVNEVEVSEVVHSRAVEALKEAGPVVRLVVRR RQN NeDLG 10863920 2 ITLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQ 146 IGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPGSLE NeDLG 10863920 3 ILLHKGSTGLGFNIVGGEDGEGIFVSFILAGGPADLSGELRRGDRI 147 LSVNGVNLRNATHEQAAAALKRAGQSVTIVAQYRPEEYSRFESK IHDLREQMMNSSMSSGSGSLRTSEKRSLE Neurabin II AJ401189 1 CVERLELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVT 148 EGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGR VRFMIGRERPGEQSEVAQRIHRD NOS1 642525 1 IQPNVISVRLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSG 149 LIQAGDIILAVNGRPLVDLSYDSALEVLRGIASETHVVLILRGP novel PDZ gene 7228177 1 QANSDESDIIHSVRVEKSPAGRLGFSVRGGSEHGLGIFVSKVEEG 150 SSAERAGLCVGDKITEVNGLSLESTTMGSAVKVLTSSSRLHMMV RRMGRVPGIKFSKEKNSS novel PDZ gene 7228177 2 PSDTSSEDGVRRIVHLYTTSDDFCLGFNIRGGKEFGLGIYVSKVD 151 HGGLAEENGIKVGDQVLAANGVRFDDISHSQAVEVLKGQTHIM LTIKETGRYPAYKEMNSS Novel Serine 1621243 1 KIKKFLTESHDRQAKGKAITKKKYIGIRMMSLTSSKAKELKDRH 152 Protease RDFPDVISGAYIIEVIPDTPAEAGGLKENDVIISINGQSVVSANDVS DVIKRESTLNMVVRRGNEDIMITV Numb Binding AK056823 1 PDGEITSIKINRVDPSESLSIRLVGGSETPLVHIIIQHIYRDGVIARD 153 Protein GRLLPGDIILKVNGMDISNVPHNYAVRLLRQPCQVLWLTVMRE QKFRSRNSS Numb Binding AK056823 2 HRPRDDSFHVILNKSSPEEQLGIKLVRKVDEPGVFIFNVLDGGVA 154 Protein YRHGQLEENDRVLAINGHDLRYGSPESAAHLIQASERRVHLVVS RQVRQRSPENSS Numb Binding AK056823 3 PTITCHEKVVNIQKDPGESLGMTVAGGASHREWDLPIYVISVEPG 155 Protein GVISRDGRIKTGDILLNVDGVELTEVSRSEAVALLKRTSSSIVLKA LEVKEYEPQEFIV Numb Binding AK056823 4 PRCLYNCKDIVLRRNTAGSLGFCIVGGYEEYNGNKPFFIKSIVEG 156 Protein TPAYNDGRIRCGDILLAVNGRSTSGMIHACLARLLKELKGRITLT IVSWPGTFL Outer Membrane 7023825 1 LLTEEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGA 157 AALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLR VQHRLQVQNGIHS p55T 12733367 1 PVDAIRILGIHKRAGEPLGVTFRVENNDLVIARILHGGMIDRQGL 158 LHVGDIIKEVNGHEVGNNPKELQELLKNISGSVTLKILPSYRDTIT PQQ PAR3 8037914 1 DDMVKLVEVPNDGGPLGIHVVPFSARGGRTLGLLVKRLEKGGK 159 AEHENLFRENDCIVRINDGDLRNRRFEQAQHMFRQAMRTPIIWF HVVPAA PAR3 8037914 2 GKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQD 160 GRLKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKMEGTVSLLVFR QEDA PAR3 8037914 3 TPDGTREFLTFEVPLNDSGSAGLGVSVKGNRSKENHADLGIFVK 161 SIINGGAASKDGRLRVNDQLIAVNGESLLGKTNQDAMETLRRSM STEGNKRGMIQLIVA PAR6 2613011 1 LPETHRRVRLHKHGSDRPLGFYIRDGMSVRVAPQGLERVPGIFIS 162 RLVRGGLAESTGLLAVSDEILEVNGIEVAGKTLDQVTDMMVAN SHNLIVTVKPANQR PAR6 GAMMA 13537118 1 IDVDLVPETHRRVRLHRHGCEKPLGFYIRDGASVRVTPHGLEKV 163 PGIFISRMVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTD MMIANSHNLIVTVKPANQRNNVV PDZ-73 5031978 1 RSRKLKEVRLDRLHPEGLGLSVRGGLEFGCGLFISHLIKGGQADS 164 VGLQVGDEIVRINGYSISSCTHEEVINLIRTKKTVSIKVRHIGLIPV KSSPDEFH PDZ-73 5031978 2 IPGNRENKEKKVFISLVGSRGLGCSISSGPIQKPGIFISHVKPGSLS 165 AEVGLEIGDQIVEVNGVDFSNLDHKEAVNVLKSSRSLTISIVAAA GRELFMTDEF PDZ-73 5031978 3 PEQIMGKDVRLLRIKKEGSLDLALEGGVDSPIGKVVVSAVYERG 166 AAERHGGIVKGDEIMAINGKIVTDYTLAEADAALQKAWNQGGD WIDLVVAVCPPKEYDD PDZK1 2944188 1 LTSTFNPRECKLSKQEGQNYGFFLRIEKDTEGHLVRVVEKCSPAE 167 KAGLQDGDRVLRINGVFVDKEEHMQVVDLVRKSGNSVTLLVLD GDSYEKAGSPGIHRD PDZK1 2944188 2 RLCYLVKEGGSYGFSLKTVQGKKGVYMTDITPQGVAMRAGVL 168 ADDHLIEVNGENVEDASHEEVVEKVKKSGSRVMFLLVDKETDK REFIVTD PDZK1 2944188 3 QFKRETASLKLLPHQPRIVEMKKGSNGYGFYLRAGSEQKGQIIK 169 DIDSGSPAEEAGLKNNDLVVAVNGESVETLDHDSVVEMIRKGG DQTSLLVVDKETDNMYRLAEFIVTD PDZK1 2944188 4 PDTTEEVDHKPKLCRLAKGENGYGFHLNAIRGLPGSFIKEVQKG 170 GPADLAGLEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTLL VZGKNSS PICK1 4678411 1 PTVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALD 171 GTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQ PIST 98374330 1 SQGVGPIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPAD 172 RCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEVVY VAPEVDSD prIL16 1478492 1 IHVTILHKEEGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGT 173 IQKGNEVLSINGKSLKGTTHHDALAILRQAREPRQAVIVTRKLTP EEFIVTD prIL16 1478492 2 TAEATVCTVTLEKMSAGLGFSLEGGKGSLHGDKPLTINRIFKGA 174 ASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIV IRRKSLQSK PSD95 3318652 1 LEYEeITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQ 175 DGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRR KPPAENSS PSD95 3318652 2 HVMRRKPPAEKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYV 176 TKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNT YDVVYLKVAKPSNAYL PSD95 3318652 3 REDIPREPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLS 177 GELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKP EFIVTD PTN-3 179912 1 LIRITPDEDGKFGFNLKGGVDQKMPLVVSRINPESPADTCIPKLNE 178 GDQIVLINGRDISEHTHDQVVMFIKASRESHSRELALVIRRR PTN-4 190747 1 IRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRL 179 NEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVRPNA PTPL1 515030 1 PEREITLVNLKKDAKYGLGFQIIGGEKMGRLDLGIFISSVAPGGPA 180 DFHGCLKPGDRLISVNSVSLEGVSHHAAIEILQNAPEDVTLVISQP KEKISKVPSTPVHL PTPL1 515030 2 GDIFEVELAKNDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAES 181 DGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEK GQSPTSK PTPL1 515030 3 TEENTFEVKLFKNSSGLGFSFSREDNLIPEQINASIVRVKKLFAGQ 182 PAAESGKIDVGDVILKVNGASLKGLSQQEVISALRGTAPEVFLLL CRPPPGVLPEIDT PTPL1 515030 4 ELEVELLITLIKSEKASLGFTVTKGNQRIGCYVHDVIQDPAKSDG 183 RLKPGDRLIKVNDTDVTNMTHTDAVNLLRAASKTVRLVIGRVL ELPRIPMLPH PTPL1 515030 5 MLPHLLPDITLTCNKEELGFSLCGGHDSLYQVVYISDINPRSVAAI 184 EGNLQLLDVIHYVNGVSTQGMTLEEVNRALDMSLPSLVLKATR NDLPV RGS12 3290015 1 RPSPPRVRSVEVARGRAGYGFTLSGQAPCVLSCVMRGSPADFVG 185 LRAGDQILAVNEINVKKASHEDVVKLIGKCSGVLHMVIAEGVGR FESCS RGS3 18644735 1 LCSERRYRQITIPRGKDGFGFTICCDSPVRVQAVDSGGPAERAGL 186 QQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWRMVPQV KPGIHRD Rhophilin-like 14279408 1 ISFSANKRWTPPRSIRFTAEEGDLGFTLRGNAPVQVHFLDPYCSA 187 SVAGAREGDYIVSIQLVDCKWLTLSEVMKLLKSFGEDEIEMKVV SLLDSTSSMHNKSAT Serine Protease 2738914 1 RGEKKNSSSGISGSQRRYIGVMMLTLSPSILAELQLREPSFPDVQH 188 GVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNAEDVYEAVRT QSQLAVQIRRGRETLTLYV Shank 1 6049185 1 EEKTVVLQKKDNEGFGFVLRGAKADTPIEEFTPTPAFPALQYLES 189 VDEGGVAWQAGLRTGDFLIEVNNENVVKVGHRQVVNMIRQGG NHLVLKVVTVTRNLDPDDTARKKA Shank 3 * 1 SDYVIDDKVAVLQKRDHEGFGFVLRGAKAETPIEEFTPTPAFPAL 190 QYLESVDVEGVAWRAGLRTGDFLIEVNGVNVVKVGHKQVVALI RQGGNRLVMKVVSVTRKPEEDG Shroom 18652858 1 IYLEAFLEGGAPWGFTLKGGLEHGEPLIISKVEEGGKADTLSSKL 191 QAGDEVVHINEVTLSSSRKEAVSLVKGSYKTLRLVVRRDVCTDP GH SIP1 2047327 1 IRLCRLVRGEQGYGFHLHGEKGRRGQFIRRVEPGSPAEAAALRA 192 GDRLVEVNGVNVEGETHHQVVQRIKAVEGQTRLLVVDQN SIP1 2047327 2 IRHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQD 193 RLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVDPETDE

SITAC-18 8886071 1 PGVREIHLCKDERGKTGLRLRKVDQGLFVQLVQANTPASLVGLR 194 FGDQLLQIDGRDCAGWSSHKAHQVVKKASGDKIVVVVRDRPFQ RTVTM SITAC-18 8886071 2 PFQRTVTMHKDSMGHVGFVIKKGKIVSLVKGSSAARNGLLTNH 195 YVCEVDGQNVIGLKDKKIMEILATAGNVVTLTIIPSVIYEHIVEFIV SSTRIP 7025450 1 LKEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLE 196 SVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQG GNTLMVKVVMVTRHPDMDEAVQ SYNTENIN 2795862 1 LEIKQGIREVILCKDQDGKIGLRLKSIDNGIFVQLVQANSPASLVG 197 LRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMRIHRD SYNTENIN 2795862 2 RDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTE 198 HNICEINGQNVIGLKDSQIADILSTSGNSS Syntrophin 1 1145727 1 QRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEA 199 alpha LFVGDAILSVNGEDLSSATHDEAVQVLKKTGKEVVLEVKYMKD VSPYFK Syntrophin beta 2 476700 1 IRVVKQEAGGLGISIKGGRENRMPILISKIFPGLAADQSRALRLGD 200 AILSVNGTDLRQATHDQAVQALKRAGKEVLLEVKFIREFIVTD Syntrophin 9507162 1 EPFYSGERTVTIRRQTVGGFGLSIKGGAEHNIPVVVSKISKEQRAE 201 gamma 1 LSGLLFIGDAILQINGINVRKCRHEEVVQVLRNAGEEVTLTVSFL KRAPAFLKLP Syntrophin 9507164 1 SHQGRNRRTVTLRRQPVGGLGLSIKGGSEHNVPVVISKIFEDQAA 202 gamma 2 DQTGMLFVGDAVLQVNGIHVENATHEEVVHLLRNAGDEVTITV EYLREAPAFLK TAX2-like 3253116 1 RGETKEVEVTKTEDALGLTITDNGAGYAFIKRIKEGSIINRIEAVC 203 protein VGDSIEAINDHSIVGCRHYEVAKMLRELPKSQPFTLRLVQPKRAF TIAM 1 4507500 1 HSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKG 204 LKAGDEILEINNRAADALNSSMLKDFLSQPSLGLLVRTYPELE TIAM 2 6912703 1 PLNVYDVQLTKTGSVCDFGFAVTAQVDERQHLSRIFISDVLPDG 205 LAYGEGLRKGNEIMTLNGEAVSDLDLKQMEALFSEKSVGLTLIA RPPDTKATL TIP1 2613001 1 QRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTR 206 VSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSE EVVRLLVTRQSLQK TIP2 2613003 1 RKEVEVFKSEDALGLTITDNGAGYAFIKRIKEGSVIDHIHLISVGD 207 MIEAINGQSLLGCRHYEVARLLKELPRGRTFTLKLTEPRK TIP33 2613007 1 HSHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVAERHG 208 GLKRGDQLLSVNGVSVEGEHHEKAVELLKAAKDSVKLVVRYTP KVL TIP43 2613011 1 ISNQKRGVKVLKQELGGLGISIKGGKENKMPILISKIFKGLAADQ 209 TQALYVGDAILSVNGADLRDATHDEAVQALKRAGKEVLLEVKY MREATPYV X-11 beta 3005559 1 IHFSNSENCKELQLEKHKGEILGVVVVESGWGSILPTVILANMM 210 NGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQTQ VKLNIVSCPPVTTVLIKRNSS X-11 beta 3005559 2 IPPVTTVLIKRPDLKYQLGFSVQNGIICSLMRGGIAERGGVRVGH 211 RIIEINGQSVVATAHEKIVQALSNSVGEIHMKTMPAAMFRLLTGQ ENSS ZO-1 292937 1 IWEQHTVTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGG 212 PAEGQLQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITI RRKKKVQIPNSS ZO-1 292937 2 ISSQPAKPTKVTLVKSRKNEEYGLRLASHIFVKEISQDSLAARDG 213 NIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVVQRDR ATLLNSS ZO-1 292937 3 IRMKLVKFRKGDSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEE 214 GDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKDVFSN ZO-2 12734763 1 LIWEQYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLP 215 GGPADGLLQENDRVVMVNGTPMEDVLHSFAVQQLRKSGKVAA IVVKRPRKV ZO-2 12734763 2 RVLLMKSRANEEYGLRLGSQIFVKEMTRTGLATKDGNLHEGDII 216 LKINGTVTENMSLTDARKLIEKSRGKLQLVVLRDS ZO-2 12734763 3 HAPNTKMVRFKKGDSVGLRLAGGNDVGIFVAGIQEGTSAEQEG 217 LQEGDQILKVNTQDFRGLVREDAVLYLLEIPKGEMVTILAQSRA DVY ZO-3 10092690 1 IPGNSTIWEQHTATLSKDPRRGFGIAISGGRDRPGGSMVVSDVVP 218 GGPAEGRLQTGDHIVMVNGVSMENATSAFAIQILKTCTKMANIT VKRPRRIHLPAEFIVTD ZO-3 10092690 2 QDVQMKPVKSVLVKRRDSEEFGVKLGSQIFIKHITDSGLAARHR 219 GLQEGDLILQINGVSSQNLSLNDTRRLIEKSEGKLSLLVLRDRGQ FLVNIPNSS ZO-3 10092690 3 RGYSPDTRVVRFLKGKSIGLRLAGGNDVGIFVSGVQAGSPADGQ 220 GIQEGDQILQVNDVPFQNLTREEAVQFLLGLPPGEEMELVTQRK QDIFWKMVQSEFIVTD

[0107] The amino acid sequences provided in Table 2 above may contain amino acids derived from a fusion protein, e.g., GST. PDZ domain sequence of particular interest may be up to 20 amino acids shorter (e.g., 5, 8, 10, 12 or 15 amino acids shorter) than the sequence provided in Table 2. For example, a sequence may be shortened by up to 3, 6, 9, or 12 amino acids from the C-terminus, the N-terminus, or both termini.

[0108] B. Identification of Candidate PL Proteins and Synthesis of Peptides

[0109] Certain PDZ domains are bound by the C-terminal residues of PDZ-binding proteins. To identify PL proteins the C-terminal residues of sequences were visually inspected for sequences that one might predict would bind to PDZ-domain containing proteins (see, e.g., Doyle et al., 1996, Cell 85, 1067; Songyang et al., 1997, Science 275, 73), including the additional consensus for PLs identified at Arbor Vita Corporation (U.S. Patent Application 60/360061). TABLE 3 lists some of these proteins, and provides corresponding C-terminal sequences.

[0110] Synthetic peptides of defined sequence (e.g., corresponding to the carboxyl-termini of the indicated proteins) can be synthesized by any standard resin-based method (see, e.g., U.S. Pat. No. 4,108,846; see also, Caruthers et al., 1980, Nucleic Acids Res. Symp. Ser., 215-223; Horn et al., 1980, Nucleic Acids Res. Symp. Ser., 225-232; Roberge, et al., 1995, Science 269:202). The peptides used in the assays described herein were prepared by the FMOC (see, e.g., Guy and Fields, 1997, Meth. Enz. 289:67-83; Wellings and Atherton, 1997, Meth. Enz. 289:44-67). In some cases (e.g., for use in the A and G assays of the invention), peptides were labeled with biotin at the amino-terminus by reaction with a four-fold excess of biotin methyl ester in dimethylsulfoxide with a catalytic amount of base. The peptides were cleaved from the resin using a halide containing acid (e.g. trifluoroacetic acid) in the presence of appropriate antioxidants (e.g. ethanedithiol) and excess solvent lyophilized.

[0111] Following lyophilization, peptides can be redissolved and purified by reverse phase high performance liquid chromatography (HPLC). One appropriate HPLC solvent system involves a Vydac C-18 semi-preparative column running at mL per minute with increasing quantities of acetonitrile plus 0.1% trifluoroacetic acid in a base solvent of water plus 0.1% trifluoroacetic acid. After HPLC purification, the identities of the peptides are confirmed by MALDI cation-mode mass spectrometry.

[0112] C. Detecting PDZ-PL Interactions

[0113] The present inventors were able in part to identify the interactions summarized in TABLE 4 by developing new high throughput screening assays which are described in greater detail infra. Various other assay formats known in the art can be used to select ligands that are specifically reactive with a particular protein. For example, solid-phase ELISA immunoassays, immunoprecipitation, Biacore, and Western blot assays can be used to identify peptides that specifically bind PDZ-domain polypeptides. As discussed supra, two different, complementary assays were developed to detect PDZ-PL interactions. In each, one binding partner of a PDZ-PL pair is immobilized, and the ability of the second binding partner to bind is determined. These assays, which are described infra, can be readily used to screen for hundreds to thousands of potential PDZ-ligand interactions in a few hours. Thus these assays can be used to identify yet more novel PDZ-PL interactions in cells. In addition, they can be used to identify antagonists of PDZ-PL interactions (see infra).

[0114] In various embodiments, fusion proteins are used in the assays and devices of the invention. Methods for constructing and expressing fusion proteins are well known. Fusion proteins generally are described in Ausubel et al., supra, Kroll et al., 1993, DNA Cell. Biol. 12:441, and Imai et al., 1997, Cell 91:521-30. Usually, the fusion protein includes a domain to facilitate immobilization of the protein to a solid substrate ("an immobilization domain"). Often, the immobilization domain includes an epitope tag (i.e., a sequence recognized by an antibody, typically a monoclonal antibody) such as polyhistidine (Bush et al, 1991, J Biol Chem 266:13811-14), SEAP (Berger et al, 1988, Gene 66:1-10), or M1 and M2 flag (see, e.g, U.S. Pat. Nos. 5,011,912; 4,851,341; 4,703,004; 4,782,137). In an embodiment, the immobilization domain is a GST coding region. It will be recognized that, in addition to the PDZ-domain and the particular residues bound by an immobilized antibody, protein A, or otherwise contacted with the surface, the protein (e.g., fusion protein), will contain additional residues. In some embodiments these are residues naturally associated with the PDZ-domain (i.e., in a particular PDZ-protein) but they may include residues of synthetic (e.g., poly(alanine)) or heterologous origin (e.g., spacers of, e.g., between 10 and 300 residues).

[0115] PDZ domain-containing polypeptide used in the methods of the invention (e.g., PDZ fusion proteins) of the invention are typically made by (1) constructing a vector (e.g., plasmid, phage or phagemid) comprising a polynucleotide sequence encoding the desired polypeptide, (2) introducing the vector into an suitable expression system (e.g., a prokaryotic, insect, mammalian, or cell free expression system), (3) expressing the fusion protein and (4) optionally purifying the fusion protein.

[0116] (1) In one embodiment, expression of the protein comprises inserting the coding sequence into an appropriate expression vector (i.e., a vector that contains the necessary elements for the transcription and translation of the inserted coding sequence required for the expression system employed, e.g., control elements including enhancers, promoters, transcription terminators, origins of replication, a suitable initiation codon (e.g., methionine), open reading frame, and translational regulatory signals (e.g., a ribosome binding site, a termination codon and a polyadenylation sequence. Depending on the vector system and host utilized, any number of suitable transcription and translation elements, including constitutive and inducible promoters, can be used.

[0117] The coding sequence of the fusion protein includes a PDZ domain and an immobilization domain as described elsewhere herein. Polynucleotides encoding the amino acid sequence for each domain can be obtained in a variety of ways known in the art; typically the polynucleotides are obtained by PCR amplification of cloned plasmids, cDNA libraries, and cDNA generated by reverse transcription of RNA, using primers designed based on sequences determined by the practitioner or, more often, publicly available (e.g., through GenBank). The primers include linker regions (e.g., sequences including restriction sites) to facilitate cloning and manipulation in production of the fusion construct. The polynucleotides corresponding to the PDZ and immobilization regions are joined in-frame to produce the fusion protein-encoding sequence.

[0118] The fusion proteins of the invention may be expressed as secreted proteins (e.g., by including the signal sequence encoding DNA in the fusion gene; see, e.g., Lui et al, 1993, PNAS USA, 90:8957-61) or as nonsecreted proteins.

[0119] In some embodiments, the PDZ-containing proteins or PL polypeptides are immobilized on a solid surface. The substrate to which the polypeptide is bound may in any of a variety of forms, e.g., a microtiter dish, a test tube, a dipstick, a microcentrifuge tube, a bead, a spinnable disk, a permeable or semi-permeable membrane, and the like. Suitable materials include glass, plastic (e.g., polyethylene, PVC, polypropylene, polystyrene, and the like), protein, paper, carbohydrate, lipid monolayer or supported lipid bilayer, films and other solid supports. Other materials that may be employed include ceramics, metals, metalloids, semiconductive materials, cements and the like.

[0120] In some embodiments, the PDZ and/or PL fusion proteins are organized as an array. The term "array," as used herein, refers to an ordered arrangement of immobilized fusion proteins, in which particular different fusion proteins (i.e., having different PDZ domains) are located at different predetermined sites on the substrate. Because the location of particular fusion proteins on the array is known, binding at that location can be correlated with binding to the PDZ domain situated at that location. Immobilization of fusion proteins on beads (individually or in groups) is another particularly useful approach. In one embodiment, individual fusion proteins are immobilized on beads. In one embodiment, mixtures of distinguishable beads are used. Distinguishable beads are beads that can be separated from each other on the basis of a property such as size, magnetic property, color (e.g., using FACS) or affinity tag (e.g., a bead coated with protein A can be separated from a bead not coated with protein A by using IgG affinity methods). Binding to particular PDZ domain may be determined.

[0121] Methods for immobilizing proteins are known, and include covalent and non-covalent methods. One suitable immobilization method is antibody-mediated immobilization. According to this method, an antibody specific for the sequence of an "immobilization domain" of the PDZ-domain containing protein is itself immobilized on the substrate (e.g., by adsorption). One advantage of this approach is that a single antibody may be adhered to the substrate and used for immobilization of a number of polypeptides (sharing the same immobilization domain). For example, an immobilization domain consisting of poly-histidine (Bush et al, 1991, J Biol Chem 266:13811-14) can be bound by an anti-histidine monoclonal antibody (R&D Systems, Minneapolis, Minn.); an immobilization domain consisting of secreted alkaline phosphatase ("SEAP") (Berger et al, 1988, Gene 66:1-10) can be bound by anti-SEAP (Sigma Chemical Company, St. Louis, Mo.); an immobilization domain consisting of a FLAG epitope can be bound by anti-FLAG. Other ligand-antiligand immobilization methods are also suitable (e.g., an immobilization domain consisting of protein A sequences (Harlow and Lane, 1988, Antibodies A Laboratory Manual, Cold Spring Harbor Laboratory; Sigma Chemical Co., St. Louis, Mo.) can be bound by IgG; and an immobilization domain consisting of streptavidin can be bound by biotin (Harlow & Lane, supra; Sigma Chemical Co., St. Louis, Mo.). In a preferred embodiment, the immobilization domain is a GST moiety, as described herein.

[0122] When antibody-mediated immobilization methods are used, glass and plastic are especially useful substrates. The substrates may be printed with a hydrophobic (e.g., Teflon) mask to form wells. Preprinted glass slides with 3, 10 and 21 wells per 14.5 cm² slide "working area" are available from, e.g., SPI Supplies, West Chester, Pa.; also see U.S. Pat. No. 4,011,350). In certain applications, a large format (12.4 cm×8.3 cm) glass slide is printed in a 96 well format is used; this format facilitates the use of automated liquid handling equipment and utilization of 96 well format plate readers of various types (fluorescent, colorimetric, scintillation). However, higher densities may be used (e.g., more than 10 or 100 polypeptides per cm²). See, e.g., MacBeath et al, 2000, Science 289:1760-63.

[0123] Typically, antibodies are bound to substrates (e.g., glass substrates) by adsorption. Suitable adsorption conditions are well known in the art and include incubation of 0.5-50 ug/ml (e.g., 10 ug/ml) mAb in buffer (e.g., PBS, or 50 to 300 mM Tris, MOPS, HEPES, PIPES, acetate buffers, pHs 6.5 to 8, at 4° C.) to 37° C. and from 1 hr to more than 24 hours.

[0124] Proteins may be covalently bound or noncovalently attached through nonspecific bonding. If covalent bonding between the fusion protein and the surface is desired, the surface will usually be polyfunctional or be capable of being polyfunctionalized. Functional groups which may be present on the surface and used for linking can include carboxylic acids, aldehydes, amino groups, cyano groups, ethylenic groups, hydroxyl groups, mercapto groups and the like. The manner of linking a wide variety of compounds to various surfaces is well known and is amply illustrated in the literature.

[0125] Exemplary assays are provided below.

[0126] "A Assay" Detection of PDZ-Ligand Binding Using Immobilized PL Peptide

[0127] In one aspect, the invention provides an assay in which biotinylated candidate PL peptides are immobilized on an avidin-coated surface. The binding of PDZ-domain fusion protein to this surface is then measured. In a preferred embodiment, the PDZ-domain fusion protein is a GST/PDZ fusion protein and the assay is carried out as follows:

(1) Avidin is bound to a surface, e.g. a protein binding surface. In one embodiment, avidin is bound to a polystyrene 96 well plate (e.g., Nunc Polysorb (cat #475094) by addition of 100 uL per well of 20 ug/mL of avidin (Pierce) in phosphate buffered saline without calcium and magnesium, pH 7.4 ("PBS", GibcoBRL) at 4° C. for 12 hours. The plate is then treated to block nonspecific interactions by addition of 200 uL per well of PBS containing 2 g per 100 mL protease-free bovine serum albumin ("PBS/BSA") for 2 hours at 4° C. The plate is then washed 3 times with PBS by repeatedly adding 200 uL per well of PBS to each well of the, plate and then dumping the contents of the plate into a waste container and tapping the plate gently on a dry surface. (2) Biotinylated PL peptides (or candidate PL peptides, e.g. see TABLE 3) are immobilized on the surface of wells of the plate by addition of 50 uL per well of 0.4 uM peptide in PBS/BSA for 30 minutes at 4° C. Usually, each different peptide is added to at least eight different wells so that multiple measurements (e.g. duplicates and also measurements using different (GST/PDZ-domain fusion proteins and a GST alone negative control) can be made, and also additional negative control wells are prepared in which no peptide is immobilized. Following immobilization of the PL peptide on the surface, the plate is washed 3 times with PBS. (3) GST/PDZ-domain fusion protein (prepared as described supra) is allowed to react with the surface by addition of 50 uL per well of a solution containing 5 ug/mL GST/PDZ-domain fusion protein in PBS/BSA for 2 hours at 4° C. As a negative control, GST alone (i.e. not a fusion protein) is added to specified wells, generally at least 2 wells (i.e. duplicate measurements) for each immobilized peptide. After the 2 hour reaction, the plate is washed 3 times with PBS to remove unbound fusion protein. (4) The binding of the GST/PDZ-domain fusion protein to the avidin-biotinylated peptide surface can be detected using a variety of methods, and detectors known in the art. In one embodiment, 50 uL per well of an anti-GST antibody in PBS/BSA (e.g. 2.5 ug/mL of polyclonal goat-anti-GST antibody, Pierce) is added to the plate and allowed to react for 20 minutes at 4° C. The plate is washed 3 times with PBS and a second, detectably labeled antibody is added. In one embodiment, 50 uL per well of 2.5 ug/mL of horseradish peroxidase (HRP)-conjugated polyclonal rabbit anti-goat immunoglobulin antibody is added to the plate and allowed to react for 20 minutes at 4° C. The plate is washed 5 times with 50 mM Tris pH 8.0 containing 0.2% Tween 20, and developed by addition of 100 uL per well of HRP-substrate solution (TMB, Dako) for 20 minutes at room temperature (RT). The reaction of the HRP and its substrate is terminated by the addition of 100 uL per well of 1M sulfuric acid and the absorbance (A) of each well of the plate is read at 450 nm. (5) Specific binding of a PL peptide and a PDZ-domain polypeptide is detected by comparing the signal from the well(s) in which the PL peptide and PDZ domain polypeptide are combined with the background signal(s). The background signal is the signal found in the negative controls. Typically a specific or selective reaction will be at least twice background signal, more typically more than 5 times background, and most typically 10 or more times the background signal. In addition, a statistically significant reaction will involve multiple measurements of the reaction with the signal and the background differing by at least two standard errors, more typically four standard errors, and most typically six or more standard errors. Correspondingly, a statistical test (e.g. a T-test) comparing repeated measurements of the signal with repeated measurements of the background will result in a p-value <0.05, more typically a p-value <0.01, and most typically a p-value <0.001 or less. As noted, in an embodiment of the "A" assay, the signal from binding of a GST/PDZ-domain fusion protein to an avidin surface not exposed to (i.e. not covered with) the PL peptide is one suitable negative control (sometimes referred to as "B"). The signal from binding of GST polypeptide alone (i.e. not a fusion protein) to an avidin-coated surface that has been exposed to (i.e. covered with) the PL peptide is a second suitable negative control (sometimes referred to as "B2"). Because all measurements are done in multiples (i.e. at least duplicate) the arithmetic mean (or, equivalently, average) of several measurements is used in determining the binding, and the standard error of the mean is used in determining the probable error in the measurement of the binding. The standard error of the mean of N measurements equals the square root of the following: the sum of the squares of the difference between each measurement and the mean, divided by the product of (N) and (N-1). Thus, in one embodiment, specific binding of the PDZ protein to the plate-bound PL peptide is determined by comparing the mean signal ("mean S") and standard error of the signal ("SE") for a particular PL-PDZ combination with the mean B1 and/or mean B2.

[0128] "G Assay"--Detection of PDZ-Ligand Binding Using Immobilized PDZ-Domain Fusion Polypeptide

[0129] In one aspect, the invention provides an assay in which a GST/PDZ fusion protein is immobilized on a surface ("G" assay). The binding of labeled PL peptide (e.g., as listed in TABLE 3) to this surface is then measured. In a preferred embodiment, the assay is carried out as follows:

(1) A PDZ-domain polypeptide is bound to a surface, e.g. a protein binding surface. In a preferred embodiment, a GST/PDZ fusion protein containing one or more PDZ domains is bound to a polystyrene 96-well plate. The GST/PDZ fusion protein can be bound to the plate by any of a variety of standard methods known to one of skill in the art, although some care must be taken that the process of binding the fusion protein to the plate does not alter the ligand-binding properties of the PDZ domain. In one embodiment, the GST/PDZ fusion protein is bound via an anti-GST antibody that is coated onto the 96-well plate. Adequate binding to the plate can be achieved when:

[0130] a. 100 uL per well of 5 ug/mL goat anti-GST polyclonal antibody (Pierce) in PBS is added to a polystyrene 96-well plate (e.g., Nunc Polysorb) at 4° C. for 12 hours.

[0131] b. The plate is blocked by addition of 200 uL per well of PBS/BSA for 2 hours at 4° C.

[0132] c. The plate is washed 3 times with PBS.

[0133] d. 50 uL per well of 5 ug/mL GST/PDZ fusion protein) or, as a negative control, GST polypeptide alone (i.e. not a fusion protein) in PBS/BSA is added to the plate for 2 hours at 4° C.

[0134] e. The plate is again washed 3 times with PBS.

(2) Biotinylated PL peptides are allowed to react with the surface by addition of 50 uL per well of 20 uM solution of the biotinylated peptide in PBS/BSA for 10 minutes at 4° C., followed by an additional 20 minute incubation at 25° C. The plate is washed 3 times with ice cold PBS. (3) The binding of the biotinylated peptide to the GST/PDZ fusion protein surface can be detected using a variety of methods and detectors known to one of skill in the art. In one embodiment, 100 uL per well of 0.5 ug/mL streptavidin-horse radish peroxidase (HRP) conjugate dissolved in BSA/PBS is added and allowed to react for 20 minutes at 4° C. The plate is then washed 5 times with 50 mM Tris pH 8.0 containing 0.2% Tween 20, and developed by addition of 100 uL per well of HRP-substrate solution (TMB, Dako) for 20 minutes at room temperature (RT). The reaction of the HRP and its substrate is terminated by addition of 100 uL per well of 1M sulfuric acid, and the absorbance of each well of the plate is read at 450 nm. (4) Specific binding of a PL peptide and a PDZ domain polypeptide is determined by comparing the signal from the well(s) in which the PL peptide and PDZ domain polypeptide are combined, with the background signal(s). The background signal is the signal found in the negative control(s). Typically a specific or selective reaction will be at least twice background signal, more typically more than 5 times background, and most typically 10 or more times the background signal. In addition, a statistically significant reaction will involve multiple measurements of the reaction with the signal and the background differing by at least two standard errors, more typically four standard errors, and most typically six or more standard errors. Correspondingly, a statistical test (e.g. a T-test) comparing repeated measurements of the signal with - repeated measurements of the background will result in a p-value <0.05, more typically a p-value <0.01, and most typically a p-value <0.001 or less. As noted, in an embodiment of the "G" assay, the signal from binding of a given PL peptide to immobilized (surface bound) GST polypeptide alone is one suitable negative control (sometimes referred to as "B1"). Because all measurement are done in multiples (i.e. at least duplicate) the arithmetic mean (or, equivalently, average.) of several measurements is used in determining the binding, and the standard error of the mean is used in determining the probable error in the measurement of the binding. The standard error of the mean of N measurements equals the square root of the following: the sum of the squares of the difference between each measurement and the mean, divided by the product of (N) and (N-1). Thus, in one embodiment, specific binding of the PDZ protein to the platebound peptide is determined by comparing the mean signal ("mean S") and standard error of the signal ("SE") for a particular PL-PDZ combination with the mean B1.

[0135] "G'' Assay" and "G'' Assay"

[0136] Two specific modifications of the specific conditions described supra for the "G assay" are particularly useful. The modified assays use lesser quantities of labeled PL peptide and have slightly different biochemical requirements for detection of PDZ-ligand binding compared to the specific assay conditions described supra.

[0137] For convenience, the assay conditions described in this section are referred to as the "G' assay" and the "G'' assay," with the specific conditions described in the preceding section on G assays being referred to as the "G⁰ assay." The "G' assay" is identical to the "G⁰ assay" except at step (2) the peptide concentration is 10 uM instead of 20 uM. This results in slightly lower sensitivity for detection of interactions with low affinity and/or rapid dissociation rate. Correspondingly, it slightly increases the certainty that detected interactions are of sufficient affinity and half-life to be of biological importance and useful therapeutic targets.

[0138] The "G'' assay" is identical to the "G⁰ assay" except that at step (2) the peptide concentration is 1 uM instead of 20 uM and the incubation is performed for 60 minutes at 25° C. (rather than, e.g., 10 minutes at 4° C. followed by 20 minutes at 25° C.). This results in lower sensitivity for interactions of low affinity, rapid dissociation rate, and/or affinity that is less at 25° C. than at 4° C. Interactions will have lower affinity at 25° C. than at 4° C. if (as we have found to be generally true for PDZ-ligand binding) the reaction entropy is negative (i.e. the entropy of the products is less than the entropy of the reactants). In contrast, the PDZ-PL binding signal may be similar in the "G'' assay" and the "G⁰ assay" for interactions of slow association and dissociation rate, as the PDZ-PL complex will accumulate during the longer incubation of the "G'' assay." Thus comparison of results of the "G'' assay" and the "G⁰ assay" can be used to estimate the relative entropies, enthalpies, and kinetics of different PDZ-PL interactions. (Entropies and enthalpies are related to binding affinity by the equations delta G=RT In (Kd)=delta H-T delta S where delta G, H, and S are the reaction free energy, enthalpy, and entropy respectively, T is the temperature in degrees Kelvin, R is the gas constant, and Kd is the equilibrium dissociation constant). In particular, interactions that are detected only or much more strongly in the "G⁰ assay" generally have a rapid dissociation rate at 25° C. (t1/2<10 minutes) and a negative reaction entropy, while interactions that are detected similarly strongly in the "G'' assay" generally have a slower dissociation rate at 25° C. (t1/2>10 minutes). Rough estimation of the thermodynamics and kinetics of PDZ-PL interactions (as can be achieved via comparison of results of the "G⁰ assay" versus the "G'' assay" as outlined supra) can be used in the design of efficient inhibitors of the interactions. For example, a small molecule inhibitor based on the chemical structure of a PL that dissociates slowly from a given PDZ domain (as evidenced by similar binding in the "G'' assay" as in the "G⁰ assay") may itself dissociate slowly and thus be of high affinity.

[0139] In this manner, variation of the temperature and duration of step (2) of the "G assay" can be used to provide insight into the kinetics and thermodynamics of the PDZ-ligand binding reaction and into design of inhibitors of the reaction.

[0140] Assay Variations

[0141] As discussed supra, it will be appreciated that many of the steps in the above-described assays can be varied, for example, various substrates can be used for binding the PL and PDZ-containing proteins; different types of PDZ containing fusion proteins can be used; different labels for detecting PDZ/PL interactions can be employed; and different ways of detection can be used.

[0142] The PDZ-PL detection assays can employ a variety of surfaces to bind the PL and/or PDZ-containing proteins. For example, a surface can be an "assay plate" which is formed from a material (e.g. polystyrene) which optimizes adherence of either the PL protein or PDZ-containing protein thereto. Generally, the individual wells of the assay plate will have a high surface area to volume ratio and therefore a suitable shape is a flat bottom well (where the proteins of the assays are adherent). Other surfaces include, but are not limited to, polystyrene or glass beads, polystyrene or glass slides, papers, dipsticks, plastics, films and the like.

[0143] For example, the assay plate can be a "microtiter" plate. The term "microtiter" plate when used herein refers to a multiwell assay plate, e.g., having between about 30 to 200 individual wells, usually 96 wells. Alternatively, high-density arrays can be used. Often, the individual wells of the microtiter plate will hold a maximum volume of about 250 ul. Conveniently, the assay plate is a 96 well polystyrene plate (such as that sold by Becton Dickinson Labware, Lincoln Park, N.J.), which allows for automation and high throughput screening. Other surfaces include polystyrene microtiter ELISA plates such as that sold by Nunc Maxisorp, Inter Med, Denmark. Often, about 50 ul to 300 ul, more preferably 100 ul to 200 ul, of an aqueous sample comprising buffers suspended therein will be added to each well of the assay plate.

[0144] The detectable labels of the invention can be any detectable compound or composition which is conjugated directly or indirectly with a molecule (such as described above). The label can be detectable by itself (e.g., radioisotope labels or fluorescent labels) or, in the case of an enzymatic label, can catalyze a chemical alteration of a substrate compound or composition which is detectable. The preferred label is an enzymatic one which catalyzes a color change of a non-radioactive color reagent.

[0145] Sometimes, the label is indirectly conjugated with the antibody. One of skill is aware of various techniques for direct and indirect conjugation. For example, the antibody can be conjugated with biotin and any of the categories of labels mentioned above can be conjugated with avidin, or vice versa (see also "A" and "G" assay above). Biotin binds selectively to avidin and thus, the label can be conjugated with the antibody in this indirect manner. See, Ausubel, supra, for a review of techniques involving biotin-avidin conjugation and similar assays. Alternatively, to achieve indirect conjugation of the label with the antibody, the antibody is conjugated with a small hapten (e.g. digoxin) and one of the different types of labels mentioned above is conjugated with an anti-hapten antibody (e.g. anti-digoxin antibody). Thus, indirect conjugation of the label with the antibody can be achieved.

[0146] Assay variations can include different washing steps. By "washing" is meant exposing the solid phase to an aqueous solution (usually a buffer or cell culture media) in such a way that unbound material (e.g., non-adhering cells, non-adhering capture agent, unbound ligand, receptor, receptor construct, cell lysate, or HRP antibody) is removed therefrom. To reduce background noise, it is convenient to include a detergent (e.g., Triton X) in the washing solution. Usually, the aqueous washing solution is decanted from the wells of the assay plate following washing. Conveniently, washing can be achieved using an automated washing device. Sometimes, several washing steps (e.g., between about 1 to 10 washing steps) can be required.

[0147] Various buffers can also be used in PDZ-PL detection assays. For example, various blocking buffers can be used to reduce assay background. The term "blocking buffer" refers to an aqueous, pH buffered solution containing at least one blocking compound which is able to bind to exposed surfaces of the substrate which are not coated with a PL or PDZ-containing protein. The blocking compound is normally a protein such as bovine serum albumin (BSA), gelatin, casein or milk powder and does not cross-react with any of the reagents in the assay. The block buffer is generally provided at a pH between about 7 to 7.5 and suitable buffering agents include phosphate and TRIS.

[0148] Various enzyme-substrate combinations can also be utilized in detecting PDZ-PL interactions. Examples of enzyme-substrate combinations include, for example:

[0149] (i) Horseradish peroxidase (HRP or HRPO) with hydrogen peroxidase as a substrate, wherein the hydrogen peroxidase oxidizes a dye precursor (e.g. orthophenylene diamine [OPD] or 3,3',5,5'-tetramethyl benzidine hydrochloride [TMB]) (as described above).

[0150] (ii) alkaline phosphatase (AP) with para-Nitrophenyl phosphate as chromogenic substrate.

[0151] (iii) Beta-D-galactosidase (Beta D-Gal) with a chromogenic substrate (e.g. p-nitrophenyl-Beta-D-galactosidase) or fluorogenic substrate 4-methylumbelliferyl-Beta-D-galactosidase.

[0152] Numerous other enzyme-substrate combinations are available to those skilled in the art. For a general review of these, see U.S. Pat. Nos. 4,275,149 and 4,318,980, both of which are herein incorporated by reference.

[0153] Further, it will be appreciated that, although, for convenience, the present discussion primarily refers to detection of PDZ-PL interactions, agonists or antagonists of PDZ-PL interactions can be used to diagnose cellular abnormalities.

V. Collection of Tissue Samples Such as Cervical Tissues

[0154] Diagnosing the presence of pathogens requires collection of samples appropriate to the organism. For detection of oncogenic HPV E6 proteins, one would collect tissue for testing from the cervix, penis, anus, or throat using a scrape, swab or biopsy technique. For diagnosis of bloodborne pathogens such as HIV, collection of blood through standard means would be most appropriate. Diagnosis of fungal or viral infections that may have caused skin lesions would require the collection of a sample from the affected area.

[0155] This invention is not intended to cover sampling devices. However, it should be noted that since the invention is predicated on the detection of PDZ or PL proteins, appropriate care must be taken to collect a sufficient amount of sample to detect pathogen proteins and to maintain the integrity of proteins in the sample. The amount of sample to collect should be determined empirically for each diagnostic test. Factors in the decision may include, but not be limited to, the stage at which detection is desired, the amount of pathogen per unit sample, the amount of diagnostic protein per unit per unit sample, availability of diagnostic epitopes and the stability of diagnostic epitopes.

[0156] Exemplary collection devices for cervical tissue include, but are not limited to, those described in U.S. Pat. Nos. 6,241,687, 6,352,513, 6,336,905, 6,115,990 and 6,346,086. These collection devices would facilitate the collection of cervical tissue for the diagnosis of oncogenic human papillomavirus infection. These devices are predominantly collection of cervical cells or tissues through scraping; alternatively, one could use standard biopsy methods to collect samples from any tissues to be examined.

[0157] Although the diagnostic method disclosed in this application is directed at the detection of PL proteins, sample collection need not be limited to collection of proteins. One could alternatively collect RNA from tissue samples, use an in vitro translation kit to produce protein from collected templates, and then assay using methods disclosed herein. In a similar manner, DNA could be collected from test samples, specific primers for oncogenic E6 proteins could be used to either amplify the DNA content (using a DNA polymerase) or transcribe and translate the sample into proteins that could be tested with methods disclosed herein.

VI. Assays for Detecting Oncogenic E6 Proteins

[0158] Oncogenic E6 proteins can be detected by their ability to bind to PDZ domains. This could be a developed into a single detection stage approach or more favorably as a two-stage or `sandwich` approach for increased sensitivity and specificity.

[0159] For single stage approaches, a `tagged` version of a PDZ domain that specifically recognizes oncogenic E6 proteins, such as those disclosed in TABLES 3 and 4, can be used to directly probe for the presence of oncogenic E6 protein in a sample. As noted supra, an example of this would be to attach the test sample to a solid support (for example, cervical cells or tissue could be coated on a slide and `fixed` to permeablize the cell membranes), incubate the sample with a tagged `PL detector` protein (a PDZ domain fusion) under appropriate conditions, wash away unbound PL detector, and assay for the presence of the `tag` in the sample. In addition, even without a tag, one could measure the physical properties of the PDZ protein and the PDZ protein bound to and E6 protein. Techniques such as surface plasmon resonance, circular dichoism, and other techniques that directly assess binding could be used to detect the presence of oncogenic E6 proteins. One should note, however, that PDZ domains may also bind endogenous cellular proteins. Thus, frequency of binding must be compared to control cells that do not contain E6 oncoproteins or the `PL detector` should be modified such that it is significantly more specific for the oncogenic E6 proteins (see section X).

[0160] For two-stage or sandwich approaches, use of the PL detector is coupled with a second method of either capturing or detecting captured proteins. The second method could be using an antibody that binds to the E6 oncoprotein or a second compound or protein that can bind to E6 oncorproteins at a location on the E6 protein that does not reduce the availability of the E6 PL. Such proteins may include, but not be limited to, p53, E6-AP, E6-BP or engineered compounds that bind E6 oncoproteins. Alternatively, one could also use DNA binding or Zn2+ binding to assay for the presence of captured E6 protein, since oncogenic E6 proteins are known to bind certain DNA structures through the use of divalent cations. Additionally, one could use the PDZ-captured E6 protein in an activity assay, since E6 is known to degrade DNA and certain proteins including p53 in the presence of a reticulocyte lysate.

[0161] Antibodies

[0162] Many biological assays are designed as a `sandwich`, where an antibody constitutes one side of the sandwich. This method can improve the signal to noise ratio for a diagnostic by reducing background signal and amplifying appropriate signals. Antibodies can be generated that specifically recognize the diagnostic protein. Since this invention discloses the method of using PDZ or PL proteins to diagnose pathogen infections, antibodies should be generated that do not conflict with the PDZ:PL interaction.

[0163] For the production of antibodies, various host animals, including but not limited to rabbits, mice, rats, etc., may be immunized by injection with a peptide. The peptide may be attached to a suitable carrier, such as BSA or KLH, by means of a side chain functional group or linkers attached to a side chain functional group. Various adjuvants may be used to increase the immunological response, depending on the host species, including but not limited to Freund's (complete and incomplete), mineral gels such as aluminum hydroxide, surface active substances such as lysolecithin, pluronic polyols, polyanions, peptides, oil emulsions, keyhole limpet hemocyanin, dinitrophenol, and potentially useful human adjuvants such as BCG (bacilli Calmette-Guerin) and Corynebacterium parvum.

[0164] Monoclonal antibodies to a peptide may be prepared using any technique which provides for the production of antibody molecules by continuous cell lines in culture. These include but are not limited to the hybridoma technique originally described by Koehler and Milstein, 1975, Nature 256:495-497, the human B-cell hybridoma technique, Kosbor et al., 1983, Immunology Today 4:72; Cote et al., 1983, Proc. Natl. Acad. Sci. U.S.A. 80:2026-2030 and the EBV-hybridoma technique (Cole et al., 1985, Monoclonal Antibodies and Cancer Therapy, Alan R. Liss, Inc., pp. 77-96 (1985)). In addition, techniques developed for the production of "chimeric antibodies" (Morrison et al., 1984, Proc. Natl. Acad. Sci. U.S.A. 81:6851-6855; Neuberger et al., 1984, Nature 312:604-608; Takeda et al., 1985, Nature 314:452-454) by splicing the genes from a mouse antibody molecule of appropriate antigen specificity together with genes from a human antibody molecule of appropriate biological activity can be used. Alternatively, techniques described for the production of single chain antibodies (U.S. Pat. No. 4,946,778) can be adapted to produce peptide-specific single chain antibodies.

[0165] Antibody fragments which contain deletions of specific binding sites may be generated by known techniques. For example, such fragments include but are not limited to F(ab')₂ fragments, which can be produced by pepsin digestion of the antibody molecule and Fab fragments, which can be generated by reducing the disulfide bridges of the F(ab')₂ fragments. Alternatively, Fab expression libraries may be constructed (Huse et al., 1989, Science 246:1275-1281) to allow rapid and easy identification of monoclonal Fab fragments with the desired specificity for the peptide of interest.

[0166] The antibody or antibody fragment specific for the desired peptide can be attached, for example, to agarose, and the antibody-agarose complex is used in immunochromatography to purify peptides of the invention. See, Scopes, 1984, Protein Purification: Principles and Practice, Springer-Verlag New York, Inc., NY, Livingstone, 1974, Methods Enzymology: Immunoaffinity Chromatography of Proteins 34:723-731. Antibodies can also be linked to other solid supports for diagnostic applications, or alternatively labeled with a means of detection such an enzyme that can cleave a colorimetric substrate, a fluorophore, a magnetic particle, or other measurable compositions of matter.

[0167] Specific antibodies against E6 proteins have historically been difficult to produce. In conjunction with the methods describe supra, one could employ a number of techniques to increase the likelihood of producing or selecting high affinity antibodies. An example is to prepare the E6 antigen (to raise antibodies against) in the same manner that one would prepare tissue or cell samples for testing. Alternatively, one could immunize with E6 fusion protein prepared in one manner, and screen for specific E6 antibodies using a second E6 protein prepared in a different manner. This should select for antibodies that recognize E6 epitopes that are conserved under different sample collection and preparation procedures. In another example, one could immunize animals with E6 antigen that has been rapidly denatured and renatured, such that epitopes that are insensitive to preparation conditions are selected for. Another method that could be employed is to use peptides corresponding to antigenic regions of the E6 proteins as predicted by Major Histocompatibility Complex (MHC) and T Cell Receptor (TCR) consensus binding. Yet another method would be to use an E6 variant that is easily produced (e.g., GST- or MBP-HPV18, described supra) and for which regions of antibody binding have been determined. These `antigenic` regions could be exchanged with homologous stretches of E6 peptide from another type (e.g., another epitope for immunization). Thus, the epitope would have a higher chance of being presented properly for antibody production.

[0168] In general, suitable anti-E6 antibodies may be prepared by immunizing suitable mammals with, for example, E6 protein that has been produced in mammalian cells (and thus has correct folding, disulphide bonds, and other protein modifications), or E6 protein that has been modified to, e.g., replace cysteine residues with other amino acids, as is known in the art, and produced in bacteria. In general, in the subject methods, a mixture of antibodies, each cross-reactive against different subsets of E6 protein, may be used. In certain embodiments, an antibody that cross-reacts with many or all E6 proteins may be used. Typically antibodies useful in the subject methods bind to E6 proteins regardless of whether the E6 proteins are oncogenic.

[0169] Alternative Detection Methods for Captured E6 Protein

[0170] E6 proteins that have been captured by PDZ domains could be detected by several alternative methods. Several proteins are known to associate with E6 proteins. Any of them that had a reasonable affinity for E6 could be used to detect the presence of captured and concentrated E6 protein in a sample by one skilled in the art. In addition, new binding proteins or aptamers could be identified that bound to E6 proteins. Third, activity assays specific for E6 could be employed.

[0171] The detection assay itself could also be carried out using a variety of methods. A standard ELISA using a PDZ to capture could be set up as a competition, where the PDZ domain is pre-loaded with a labeled PL that has lower affinity than the E6 proteins. Thus, in the presence of E6, the label is displaced and one sees a reduction of signal that corresponds to E6 presence. Other variants that use aspects of competition and inhibition of binding are intended to be included as well. One variant could even have the PL covalently attached to the PDZ domain through a linker such that the PL could bind it's own PDZ domain. Using donor quenching dyes, one would only see an increase in signal when the PL of an oncogenic E6 protein was able to displace the labeled PL. All such competition methods must be measured against controls that assess the amount of endogenous PL proteins that can bind the PDZ domain used to assess the presence of oncogenic E6 proteins.

VII. Measurements of Assay Sensitivity

[0172] The "A" and "G" assays of the invention can be used to determine the "apparent affinity" of binding of a PDZ ligand peptide to a PDZ-domain polypeptide. Apparent affinity is determined based on the concentration of one molecule required to saturate the binding of a second molecule (e.g., the binding of a ligand to a receptor). Two particularly useful approaches for quantitation of apparent affinity of PDZ-ligand binding are provided infra. These methods can be used to compare the sensitivity and affinity of differing PL detector constructs. Understanding the sensitivity of the PDZ for pathogen PLs is essential because it helps to define the amount of tissue or cell sample that must be tested to obtain a definitive result.

[0173] (1) A GST/PDZ fusion protein, as well as GST alone as a negative control, are bound to a surface (e.g., a 96-well plate) and the surface blocked and washed as described supra for the "G" assay.

[0174] (2) 50 uL per well of a solution of biotinylated PL peptide (e.g. as shown in TABLE 3) is added to the surface in increasing concentrations in PBS/BSA (e.g. at 0.1 uM, 0.33 uM, 1 uM, 3.3 uM, 10 uM, 33 uM, and 100 uM). In one embodiment, the PL peptide is allowed to react with the bound GST/PDZ fusion protein (as well as the GST alone negative control) for 10 minutes at 4° C. followed by 20 minutes at 25° C. The plate is washed 3 times with ice cold PBS to remove unbound labeled peptide.

[0175] (3) The binding of the PL peptide to the immobilized PDZ-domain polypeptide is detected as described supra for the "G" assay.

[0176] (4) For each concentration of peptide, the net binding signal is determined by subtracting the binding of the peptide to GST alone from the binding of the peptide to the GST/PDZ fusion protein. The net binding signal is then plotted as a function of ligand concentration and the plot is fit (e.g. by using the Kaleidagraph software package curve fitting algorithm; Synergy Software) to the following equation, where "Signal.sub.[ligand]" is the net binding signal at PL peptide concentration "[ligand]," "Kd" is the apparent affinity of the binding event, and "Saturation Binding" is a constant determined by the curve fitting algorithm to optimize the fit to the experimental data:

Signal.sub.[ligand]=Saturation Binding×([ligand]/([ligand]+Kd))

[0177] For reliable application of the above equation it is necessary that the highest peptide ligand concentration successfully tested experimentally be greater than, or at least similar to, the calculated Kd (equivalently, the maximum observed binding should be similar to the calculated saturation binding). In cases where satisfying the above criteria proves difficult, an alternative approach (infra) can be used.

[0178] Approach 2:

[0179] (1) A fixed concentration of a PDZ-domain polypeptide and increasing concentrations of a labeled PL peptide (labeled with, for example, biotin or fluorescein, see TABLE 3 for representative peptide amino acid sequences) are mixed together in solution and allowed to react. In one embodiment, preferred peptide concentrations are 0.1 uM, 1 uM, 10 uM, 100 uM, 1 mM. In various embodiments, appropriate reaction times can range from 10 minutes to 2 days at temperatures ranging from 4° C. to 37° C. In some embodiments, the identical reaction can also be carried out using a non-PDZ domain-containing protein as a control (e.g., if the PDZ-domain polypeptide is fusion protein, the fusion partner can be used).

[0180] (2) PDZ-ligand complexes can be separated from unbound labeled peptide using a variety of methods known in the art. For example, the complexes can be separated using high performance size-exclusion chromatography (HPSEC, gel filtration) (Rabinowitz et al., 1998, Immunity 9:699), affinity chromatography (e.g. using glutathione Sepharose beads), and affinity absorption (e.g., by binding to an anti-GST-coated plate as described supra).

[0181] (3) The PDZ-ligand complex is detected based on presence of the label on the peptide ligand using a variety of methods and detectors known to one of skill in the art. For example, if the label is fluorescein and the separation is achieved using HPSEC, an in-line fluorescence detector can be used. The binding can also be detected as described supra for the G assay.

[0182] (4) The PDZ-ligand binding signal is plotted as a function of ligand concentration and the plot is fit. (e.g., by using the Kaleidagraph software package curve fitting algorithm) to the following equation, where "Signal.sub.[ligand]" is the binding signal at PL peptide concentration "[ligand]," "Kd" is the apparent affinity of the binding event, and "Saturation Binding" is a constant determined by the curve fitting algorithm to optimize the fit to the experimental data:

Signal.sub.[ligand]=Saturation Binding×([ligand]/([ligand+Kd])

[0183] Measurement of the affinity of a labeled peptide ligand binding to a PDZ-domain polypeptide is useful because knowledge of the affinity (or apparent affinity) of this interaction allows rational design of inhibitors of the interaction with known potency. The potency of inhibitors in inhibition would be similar to (i.e. within one-order of magnitude of) the apparent affinity of the labeled peptide ligand binding to the PDZ-domain.

[0184] Thus, in one aspect, the invention provides a method of determining the apparent affinity of binding between a PDZ domain and a ligand by immobilizing a polypeptide comprising the PDZ domain and a non-PDZ domain on a surface, contacting the immobilized polypeptide with a plurality of different concentrations of the ligand, determining the amount of binding of the ligand to the immobilized polypeptide at each of the concentrations of ligand, and calculating the apparent affinity of the binding based on that data. Typically, the polypeptide comprising the PDZ domain and a non-PDZ domain is a fusion protein. In one embodiment, the e.g., fusion protein is GST-PDZ fusion protein, but other polypeptides can also be used (e.g., a fusion protein including a PDZ domain and any of a variety of epitope tags, biotinylation signals and the like) so long as the polypeptide can be immobilized In an orientation that does not abolish the ligand binding properties of the PDZ domain, e.g, by tethering the polypeptide to the surface via the non-PDZ domain via an anti-domain antibody and leaving the PDZ domain as the free end. It was discovered, for example, reacting a PDZ-GST fusion polypeptide directly to a plastic plate provided suboptimal results. The calculation of binding affinity itself can be determined using any suitable equation (e.g., as shown supra; also see Cantor and Schimmel (1980) BIOPHYSICAL CHEMISTRY WH Freeman & Co., San Francisco) or software.

[0185] Thus, in a preferred embodiment, the polypeptide is immobilized by binding the polypeptide to an immobilized immunoglobulin that binds the non-PDZ domain (e.g., an anti-GST antibody when a GST-PDZ fusion polypeptide is used). In a preferred embodiment, the step of contacting the ligand and PDZ-domain polypeptide is carried out under the conditions provided supra in the description of the "G" assay. It will be appreciated that binding assays are conveniently carried out in multiwell plates (e.g., 24-well, 96-well plates, or 384 well plates).

[0186] The present method has considerable advantages over other methods for measuring binding affinities PDZ-PL affinities, which typically involve contacting varying concentrations of a GST-PDZ fusion protein to a ligand-coated surface. For example, some previously described methods for determining affinity (e.g., using immobilized ligand and GST-PDZ protein in solution) did not account for oligomerization state of the fusion proteins used, resulting in potential errors of more than an order of magnitude.

[0187] Although not sufficient for quantitative measurement of PDZ-PL binding affinity, an estimate of the relative strength of binding of different PDZ-PL pairs can be made based on the absolute magnitude of the signals observed in the "G assay." This estimate will reflect several factors, including biologically relevant aspects of the interaction, including the affinity and the dissociation rate. For comparisons of different ligands binding to a given PDZ domain-containing protein, differences in absolute binding signal likely relate primarily to the affinity and/or dissociation rate of the interactions of interest.

VIII. Measurements of Assay Specificity

[0188] As described supra, the present invention provides powerful methods for analysis of PDZ-ligand interactions, including high-throughput methods such as the "G" assay and affinity assays described supra. In one embodiment of the invention, the affinity is determined for a particular ligand and a plurality of PDZ proteins. Typically the plurality is at least 5, and often at least 25, or at least 40 different PDZ proteins. In a preferred embodiment, the plurality of different PDZ proteins are from a particular tissue (e.g., central nervous system, spleen, cardiac muscle, kidney) or a particular class or type of cell, (e.g., a hematopoietic cell, a lymphocyte, a neuron) and the like. In a most preferred embodiment, the plurality of different PDZ proteins represents a substantial fraction (e.g., typically a majority, more often at least 80%) of all of the PDZ proteins known to be, or suspected of being, expressed in the tissue or cell(s), e.g., all of the PDZ proteins known to be present in lymphocytes. In an embodiment, the plurality is at least 50%, usually at least 80%, at least 90% or all of the PDZ proteins disclosed herein as being expressed in hematopoietic cells.

[0189] In one embodiment of the invention, the binding of a ligand to the plurality of PDZ proteins is determined. Using this method, it is possible to identify a particular PDZ domain bound with particular specificity by the ligand. The binding may be designated as "specific" if the affinity of the ligand to the particular PDZ domain is at least 2-fold that of the binding to other PDZ domains in the plurality (e.g., present in that cell type). The binding is deemed "very specific" if the affinity is at least 10-fold higher than to any other PDZ in the plurality or, alternatively, at least 10-fold higher than to at least 90%, more often 95% of the other PDZs in a defined plurality. Similarly, the binding is deemed "exceedingly specific" if it is at least 100-fold higher. For example, a ligand could bind to 2 different PDZs with an affinity of 1 uM and to no other PDZs out of a set 40 with an affinity of less than 100 uM. This would constitute specific binding to those 2 PDZs. Similar measures of specificity are used to describe binding of a PDZ to a plurality of PLs.

[0190] It will be recognized that high specificity PDZ-PL interactions represent potentially more valuable targets for achieving a desired biological effect. The ability of an inhibitor or enhancer to act with high specificity is often desirable. In particular, the most specific PDZ-ligand interactions are also the diagnostic targets, allowing specific detection of the interaction or disruption of an interaction.

[0191] Thus, in one embodiment, the invention provides a method of identifying a high specificity interaction between a particular PDZ domain and a ligand known or suspected of binding at least one PDZ domain, by providing a plurality of different immobilized polypeptides, each of said polypeptides comprising a PDZ domain and a non-PDZ domain; determining the affinity of the ligand for each of said polypeptides, and comparing the affinity of binding of the ligand to each of said polypeptides, wherein an interaction between the ligand and a particular PDZ domain is deemed to have high specificity when the ligand binds an immobilized polypeptide comprising the particular PDZ domain with at least 2-fold higher affinity than to immobilized polypeptides not comprising the particular PDZ domain.

[0192] In a related aspect, the affinity of binding of a specific PDZ domain to a plurality of ligands (or suspected ligands) is determined. For example, in one embodiment, the invention provides a method of identifying a high specificity interaction between a PDZ domain and a particular ligand known or suspected of binding at least one PDZ domain, by providing an immobilized polypeptide comprising the PDZ domain and a non-PDZ domain; determining the affinity of each of a plurality of ligands for the polypeptide, and comparing the affinity of binding of each of the ligands to the polypeptide, wherein an interaction between a particular ligand and the PDZ domain is deemed to have high specificity when the ligand binds an immobilized polypeptide comprising the PDZ domain with at least 2-fold higher affinity than other ligands tested. Thus, the binding may be designated as "specific" if the affinity of the PDZ to the particular PL is at least 2-fold that of the binding to other PLs in the plurality (e.g., present in that cell type). The binding is deemed "very specific" if the affinity is at least 10-fold higher than to any other PL in the plurality or, alternatively, at least 10-fold higher than to at least 90%, more often 95% of the other PLs in a defined plurality. Similarly, the binding is deemed "exceedingly specific" if it is at least 100-fold higher. Typically the plurality is at least 5 different ligands, more often at least 10.

[0193] A. Use of Array for Global Predictions

[0194] One discovery of the present inventors relates to the important and extensive roles played by interactions between PDZ proteins and PL proteins, particularly in the biological function of hematopoietic cells and other cells involved in the immune response. Further, it has been discovered that valuable information can be ascertained by analysis (e.g., simultaneous analysis) of a large number of PDZ-PL interactions. In a preferred embodiment, the analysis encompasses all of the PDZ proteins expressed in a particular tissue (e.g., spleen) or type or class of cell (e.g., hematopoietic cell, neuron, lymphocyte, B cell, T cell and the like). Alternatively, the analysis encompasses at least about 5, or at least about 10, or at least about 12, or at least about 15 and often at least 50 different polypeptides, up to about 60, about 80, about 100, about 150, about 200, or even more different polypeptides; or a substantial fraction (e.g., typically a majority, more often at least 80%) of all of the PDZ proteins known to be, or suspected of being, expressed in the tissue or cell(s), e.g., all of the PDZ proteins known to be present in lymphocytes.

[0195] It will be recognized that the arrays and methods of the invention are directed to the analysis of PDZ and PL interactions, and involve selection of such proteins for analysis. While the devices and methods of the invention may include or involve a small number of control polypeptides, they typically do not include significant numbers of proteins or fusion proteins that do not include either PDZ or PL domains (e.g., typically, at least about 90% of the arrayed or immobilized polypeptides in a method or device of the invention is a PDZ or PL sequence protein, more often at least about 95%, or at least about 99%).

[0196] It will be apparent from this disclosure that analysis of the relatively large number of different interactions preferably takes place simultaneously. In this context, "simultaneously" means that the analysis of several different PDZ-PL interactions (or the effect of a test agent on such interactions) is assessed at the same time. Typically the analysis is carried out in a high throughput (e.g., robotic) fashion. One advantage of this method of simultaneous analysis is that it permits rigorous comparison of multiple different PDZ-PL interactions. For example, as explained in detail elsewhere herein, simultaneous analysis (and use of the arrays described infra) facilitates, for example, the direct comparison of the effect of an agent (e.g., an potential interaction inhibitor) on the interactions between a substantial portion of PDZs and/or PLs in a tissue or cell.

[0197] Accordingly, in one aspect, the invention provides an array of immobilized polypeptide comprising the PDZ domain and a non-PDZ domain on a surface. Typically, the array comprises at least about 5, or at least about 10, or at least about 12, or at least about 15 and often at least 50 different polypeptides. In one preferred embodiment, the different PDZ proteins are from a particular tissue (e.g., central nervous system, spleen, cardiac muscle, kidney) or a particular class or type of cell, (e.g., a hematopoietic cell, a lymphocyte, a neuron) and the like. In a most preferred embodiment, the plurality of different PDZ proteins represents a substantial fraction (e.g., typically a majority, more often at least 60%, 70% or 80%) of all of the PDZ proteins known to be, or suspected of being, expressed in the tissue or cell(s), e.g., all of the PDZ proteins known to be present in lymphocytes.

[0198] Certain embodiments are arrays which include a plurality, usually at least 5, 10, 25, 50 PDZ proteins present in a particular cell of interest. In this context, "array" refers to an ordered series of immobilized polypeptides in which the identity of each polypeptide is associated with its location. In some embodiments the plurality of polypeptides are arrayed in a "common" area such that they can be simultaneously exposed to a solution (e.g., containing a ligand or test agent). For example, the plurality of polypeptides can be on a slide, plate or similar surface, which may be plastic, glass, metal, silica, beads or other surface to which proteins can be immobilized. In a different embodiment, the different immobilized polypeptides are situated in separate areas, such as different wells of multi-well plate (e.g., a 24-well plate, a 96-well plate, a 384 well plate, and the like). It will be recognized that a similar advantage can be obtained by using multiple arrays in tandem.

[0199] B. Analysis of PDZ-PL Inhibition Profile

[0200] In one aspect, the invention provides a method for determining if a test compound inhibits any PDZ-ligand interaction in large set of PDZ-ligand interactions (e.g., a plurality of the PDZ-ligands interactions described in U.S. patent application Ser. No. 09/724,553; a majority of the PDZ-ligands identified in a particular cell or tissue as described supra (e.g., cervical tissue) and the like. In one embodiment, the PDZ domains of interest are expressed as GST-PDZ fusion proteins and immobilized as described herein. For each PDZ domain, a labeled ligand that binds to the domain with a known affinity is identified as described herein.

[0201] For any known or suspected modulator (e.g., inhibitor) of a PDZ-PL interaction(s), it is useful to know which interactions are inhibited (or augmented). This information could be used as a diagnostic marker for the presence of a pathogen (e.g., oncogenic HPV strains). The profile of PDZ interactions inhibited by a particular agent is referred to as the "inhibition profile" for the agent, and is described in detail below. The profile of PDZ interactions enhanced by a particular agent is referred to as the "enhancement profile" for the agent. It will be readily apparent to one of skill guided by the description of the inhibition profile how to determine the enhancement profile for an agent. The present invention provides methods for determining the PDZ interaction (inhibition/enhancement) profile of an agent in a single assay.

[0202] In one aspect, the invention provides a method for determining the PDZ-PL inhibition profile of a compound by providing (i) a plurality of different immobilized polypeptides, each of said polypeptides comprising a PDZ domain and a non-PDZ domain and (ii) a plurality of corresponding ligands, wherein each ligand binds at least one PDZ domain in (i), then contacting each of said immobilized polypeptides in (i) with a corresponding ligand in (ii) in the presence and absence of a test compound, and determining for each polypeptide-ligand pair whether the test compound inhibits binding between the immobilized polypeptide and the corresponding ligand.

[0203] Typically the plurality is at least 5, and often at least 25, or at least 40 different PDZ proteins. In a preferred embodiment, the plurality of different ligands and the plurality of different PDZ proteins are from the same tissue or a particular class or type of cell, e.g., a cervical cell, a penile cell, an anal cell and the like. In a most preferred embodiment, the plurality of different PDZs represents a substantial fraction (e.g., at least 80%) of all of the PDZs known to be, or suspected of being, expressed in the tissue or cell(s), e.g., all of the PDZs known to be present in lymphocytes (for example, at least 80%, at least 90% or all of the PDZs disclosed herein as being expressed in hematopoietic cells).

[0204] In one embodiment, the inhibition profile is determined as follows: A plurality (e.g., all known) PDZ domains expressed in a cell (e.g., cervical cells) are expressed as GST-fusion proteins and immobilized without altering their ligand binding properties as described supra. For each PDZ domain, a labeled ligand that binds to this domain with a known affinity is identified. If the set of PDZ domains expressed in lymphocytes is denoted by {P1 . . . Pn}, any given PDZ domain Pi binds a (labeled) ligand Li with affinity K_di. To determine the inhibition profile for a test agent "compound X" the "G" assay (supra) can be performed as follows in 96-well plates with rows A-H and columns 1-12. Column 1 is coated with P1 and washed. The corresponding ligand L1 is added to each washed coated well of column 1 at a concentration 0.5 K_d1 with (rows B, D, F, H) or without (rows A, C, E, F) between about 1 and about 1000 uM) of test compound X. Column 2 is coated with P2, and L2 (at a concentration 0.5 K_d2) is added with or without inhibitor X. Additional PDZ domains and ligands are similarly tested.

[0205] Compound X is considered to inhibit the binding of Li to Pi if the average signal in the wells of column i containing X is less than half the signal in the equivalent wells of the column lacking X. Thus, in this single assay one determines the full set of lymphocyte PDZs that are inhibited by compound X.

[0206] In some embodiments, the test compound X is a mixture of compounds, such as the product of a combinatorial chemistry synthesis as described supra. In some embodiments, the test compound is known to have a desired biological effect, and the assay is used to determine the mechanism of action (i.e., if the biological effect is due to modulating a PDZ-PL interaction).

[0207] It will be apparent that an agent that modulates only one, or a few PDZ-PL interactions, in a panel (e.g., a panel of all known PDZs lymphocytes, a panel of at least 10, at least 20 or at least 50 PDZ domains) is a more specific modulator than an agent that modulate many or most interactions. Typically, an agent that modulates less than 20% of PDZ domains in a panel (e.g., Table 2) is deemed a "specific" inhibitor, less than 6% a "very specific" inhibitor, and a single PDZ domain a "maximally specific" inhibitor.

[0208] It will also be appreciated that "compound X" may be a composition containing mixture of compounds (e.g., generated using combinatorial chemistry methods) rather than a single compound.

[0209] Several variations of this assay are contemplated:

[0210] In some alternative embodiments, the assay above is performed using varying concentrations of the test compound X, rather than fixed concentration. This allows determination of the Ki of the X for each PDZ as described above.

[0211] In an alternative embodiment, instead of pairing each PDZ-PL with a specific labeled ligand Li, a mixture of different labeled ligands is created that such that for every PDZ at least one of the ligands in the mixture binds to this PDZ sufficiently to detect the binding in the "G" assay. This mixture is then used for every PDZ domain.

[0212] In one embodiment, compound X is known to have a desired biological effect, but the chemical mechanism by which it has that effect is unknown. The assays of the invention can then be used to determine if compound X has its effect by binding to a PDZ domain.

[0213] In one embodiment, PDZ-domain containing proteins are classified in to groups based on their biological function, e.g. into those that regulate chemotaxis versus those that regulate transcription. An optimal inhibitor of a particular function (e.g., including but not limited to an anti-chemotactic agent, an anti-T cell activation agent, cell-cycle control, vesicle transport, apoptosis, etc.) will inhibit multiple PDZ-ligand interactions involved in the function (e.g., chemotaxis, activation) but few other interactions. Thus, the assay is used in one embodiment in screening and design of a drug that specifically blocks a particular function. For example, an agent designed to block chemotaxis might be identified because, at a given concentration, the agent inhibits 2 or more PDZs involved in chemotaxis but fewer than 3 other PDZs, or that inhibits PDZs involved in chemotaxis with a Ki>10-fold better than for other PDZs. Thus, the invention provides a method for identifying an agent that inhibits a first selected PDZ-PL interaction or plurality of interactions but does not inhibit a second selected PDZ-PL interaction or plurality of interactions. The two (or more) sets of interactions can be selected on the basis of the known biological function of the PDZ proteins, the tissue specificity of the PDZ proteins, or any other criteria. Moreover, the assay can be used to determine effective doses (i.e., drug concentrations) that result in desired biological effects while avoiding undesirable effects.

[0214] C. Agonists and Antagonists of PDZ-PL Interactions

[0215] As described herein, interactions between PDZ proteins and PL proteins in cells (e.g., cervical cells) may be disrupted or inhibited by the presence of pathogens. Pathogens can be identified using screening assays described herein. Agonists and antagonists of PDZ-Pathogen PL interactions or PDZ-Cellular PL interactions can be useful in discerning or confirming specific interactions. In some embodiments, an agonist will increase the sensitivity of a PDZ-pathogen PL interaction. In other embodiments, an antagonist of a PDZ-pathogen PL interaction can be used to verify the specificity of an interaction. In one embodiment, the motifs disclosed herein are used to design inhibitors. In some embodiments, the antagonists of the invention have a structure (e.g., peptide sequence) based on the C-terminal residues of PL-domain proteins listed in TABLE 3. In some embodiments, the antagonists of the invention have a structure (e.g., peptide sequence) based on a PL motif disclosed herein or in U.S. patent application Ser. No. 09/724,553.

[0216] The PDZ/PL antagonists and antagonists of the invention may be any of a large variety of compounds, both naturally occurring and synthetic, organic and inorganic, and including polymers (e.g., oligopeptides, polypeptides, oligonucleotides, and polynucleotides), small molecules, antibodies, sugars, fatty acids, nucleotides and nucleotide analogs, analogs of naturally occurring structures (e.g., peptide mimetics, nucleic acid analogs, and the like), and numerous other compounds. Although, for convenience, the present discussion primarily refers antagonists of PDZ-PL interactions, it will be recognized that PDZ-PL interaction agonists can also be use in the methods disclosed herein.

[0217] In one aspect, the peptides and peptide mimetics or analogues of the invention contain an amino acid sequence that binds a PDZ domain in a cell of interest. In one embodiment, the antagonists comprise a peptide that has a sequence corresponding to the carboxy-terminal sequence of a PL protein listed in TABLE 3 or in U.S. patent application Ser. No. 09/724,553, e.g., a peptide listed TABLE 3. Typically, the peptide comprises at least the C-terminal two (3), three (3) or four (4) residues of the PL protein, and often the inhibitory peptide comprises more than four residues (e.g., at least five, six, seven, eight, nine, ten, twelve or fifteen residues) from the PL protein C-terminus.

[0218] In some embodiments, the inhibitor is a peptide, e.g., having a sequence of a PL C-terminal protein sequence.

[0219] In some embodiments, the antagonist is a fusion protein comprising such a sequence. Fusion proteins containing a transmembrane transporter amino acid sequence are particularly useful.

[0220] In some embodiments, the inhibitor is conserved variant of the PL C-terminal protein sequence having inhibitory activity.

[0221] In some embodiments, the antagonist is a peptide mimetic of a PL C-terminal sequence.

[0222] In some embodiments, the inhibitor is a small molecule (i.e., having a molecular weight less than 1 kD).

[0223] D. Peptide Antagonists

[0224] In one embodiment, the antagonists comprise a peptide that has a sequence of a PL protein carboxy-terminus listed in TABLE 3. The peptide comprises at least the C-terminal two (2) residues of the PL protein, and typically, the inhibitory peptide comprises more than two residues (e.g, at least three, four, five, six, seven, eight, nine, ten, twelve or fifteen residues) from the PL protein C-terminus. The peptide may be any of a variety of lengths (e.g., at least 2, at least 3, at least 4, at least 5, at least 6, at least 8, at least 10, or at least 20 residues) and may contain additional residues not from the PL protein. It will be recognized that short PL peptides are sometime used in the rational design of other small molecules with similar properties.

[0225] Although most often, the residues shared by the inhibitory peptide with the PL protein are found at the C-terminus of the peptide. However, in some embodiments, the sequence is internal. Similarly, in some cases, the inhibitory peptide comprises residues from a PL sequence that is near, but not at the c-terminus of a PL protein (see, Gee et al., 1998, J Biological Chem. 273:21980-87).

[0226] Sometime the PL protein carboxy-terminus sequence is referred to as the "core PDZ motif sequence" referring to the ability of the short sequence to interact with the PDZ domain. For example, in an embodiment, the "core PDZ motif sequence" contains the last four C-terminus amino acids. As described above, the four amino acid core of a PDZ motif sequence may contain additional amino acids at its amino terminus to further increase its binding affinity and/or stability. Thus, in one embodiment, the PDZ motif sequence peptide can be from four amino acids up to 15 amino acids. It is preferred that the length of the sequence to be 6-10 amino acids. More preferably, the PDZ motif sequence contains 8 amino acids. Additional amino acids at the amino terminal end of the core sequence may be derived from the natural sequence in each hematopoietic cell surface receptor or a synthetic linker. The additional amino acids may also be conservatively substituted. When the third residue from the C-terminus is S, T or Y, this residue may be phosphorylated prior to the use of the peptide.

[0227] In some embodiments, the peptide and nonpeptide inhibitors of the are small, e.g., fewer than ten amino acid residues in length if a peptide. Further, it is reported that a limited number of ligand amino acids directly contact the PDZ domain (generally less than eight) (Kozlov et al., 2000, Biochemistry 39, 2572; Doyle et al., 1996, Cell 85, 1067) and that peptides as short as the C-terminal three amino acids often retain similar binding properties to longer (>15) amino acids peptides (Yanagisawa et al., 1997, J. Biol. Chem. 272, 8539).

[0228] E. Peptide Variants

[0229] Having identified PDZ binding peptides and PDZ-PL interaction inhibitory sequences, variations of these sequences can be made and the resulting peptide variants can be tested for PDZ domain binding or PDZ-PL inhibitory activity. In embodiments, the variants have the same or a different ability to bind a PDZ domain as the parent peptide. Typically, such amino acid substitutions are conservative, i.e., the amino acid residues are replaced with other amino acid residues having physical and/or chemical properties similar to the residues they are replacing. Preferably, conservative amino acid substitutions are those wherein an amino acid is replaced with another amino acid encompassed within the same designated class.

[0230] F. Peptide Mimetics

[0231] Having identified PDZ binding peptides and PDZ-PL interaction inhibitory sequences, peptide mimetics can be prepared using routine methods, and the inhibitory activity of the mimetics can be confirmed using the assays of the invention. Thus, in some embodiments, the agonist or antagonist is a peptide mimetic of a PL C-terminal sequence. The skilled artisan will recognize that individual synthetic residues and polypeptides incorporating mimetics can be synthesized using a variety of procedures and methodologies, which are well described in the scientific and patent literature, e.g., Organic Syntheses Collective Volumes, Gilman et al. (Eds) John Wiley & Sons, Inc., NY. Polypeptides incorporating mimetics can also be made using solid phase synthetic procedures, as described, e.g., by Di Marchi, et al., U.S. Pat. No. 5,422,426. Mimetics of the invention can also be synthesized using combinatorial methodologies. Various techniques for generation of peptide and peptidomimetic libraries are well known, and include, e.g., multipin, tea bag, and split-couple-mix techniques; see, e.g., al-Obeidi (1998) Mol. Biotechnol. 9:205-223; Hruby (1997) Curr. Opin. Chem. Biol. 1:114-119; Ostergaard (1997) Mol. Divers. 3:17-27; Ostresh (1996) Methods Enzymol. 267:220-234.

[0232] G. Small Molecules

[0233] In some embodiments, the agonist or antagonist is a small molecule (i.e., having a molecular weight less than 1 kD). Methods for screening small molecules are well known in the art and include those described supra.

IX. Methods of Optimizing a PL Detector

[0234] Although described supra primarily in terms of identifying interactions between PDZ-domain polypeptides and PL proteins, the assays described supra and other assays can also be used to identify the binding of other molecules (e.g., peptide mimetics, small molecules, and the like) to PDZ domain sequences. For example, using the assays disclosed herein, combinatorial and other libraries of compounds can be screened, e.g., for molecules that specifically bind to PDZ domains. Screening of libraries can be accomplished by any of a variety of commonly known methods. See, e.g., the following references, which disclose screening of peptide libraries: Parmley and Smith, 1989, Adv. Exp. Med. Biol. 251:215-218; Scott and Smith, 1990, Science 249:386-390; Fowlkes et al., 1992; BioTechniques 13:422-427; Oldenburg et al., 1992, Proc. Natl. Acad. Sci. USA 89:5393-5397; Yu et al., 1994, Cell 76:933-945; Staudt et al., 1988, Science 241:577-580; Bock et al., 1992, Nature 355:564-566; Tuerk et al., 1992, Proc. Natl. Acad. Sci. USA 89:6988-6992; Ellington et al., 1992, Nature 355:850-852; U.S. Pat. No. 5,096,815, U.S. Pat. No. 5,223,409, and U.S. Pat. No. 5,198,346, all to Ladner et al.; Rebar and Pabo, 1993, Science 263:671-673; and PCT Publication No. WO 94/18318.

[0235] In a specific embodiment, screening can be carried out by contacting the library members with a PDZ-domain polypeptide immobilized on a solid support (e.g. as described supra in the "G" assay) and harvesting those library members that bind to the protein. Examples of such screening methods, termed "panning" techniques are described by way of example in Parmley and Smith, 1988, Gene 73:305-318; Fowlkes et al., 1992, BioTechniques 13:422-427; PCT Publication No. WO 94/18318; and in references cited hereinabove.

[0236] In another embodiment, the two-hybrid system for selecting interacting proteins in yeast (Fields and Song, 1989, Nature 340:245-246; Chien et al., 1991, Proc. Natl. Acad. Sci. USA 88:9578-9582) can be used to identify molecules that specifically bind to a PDZ domain-containing protein. Furthermore, the identified molecules are further tested for their ability to inhibit transmembrane receptor interactions with a PDZ domain.

[0237] In one aspect of the invention, antagonists of an interaction between a PDZ protein and a PL protein are identified. In one embodiment, a modification of the "A" assay described supra is used to identify antagonists. In one embodiment, a modification of the "G" assay described supra is used to identify antagonists.

[0238] In one embodiment, screening assays are used to detect molecules that specifically bind to PDZ domains. Such molecules are useful as agonists or antagonists of PDZ-protein-mediated cell function (e.g., cell activation, e.g., T cell activation, vesicle transport, cytokine release, growth factors, transcriptional changes, cytoskeleton rearrangement, cell movement, chemotaxis, and the like). In one embodiment, such assays are performed to screen for leukocyte activation inhibitors for drug development. The invention thus provides assays to detect molecules that specifically bind to PDZ domain-containing proteins. For example, recombinant cells expressing PDZ domain-encoding nucleic acids can be used to produce PDZ domains in these assays and to screen for molecules that bind to the domains. Molecules are contacted with the PDZ domain (or fragment thereof) under conditions conducive to binding, and then molecules that specifically bind to such domains are identified. Methods that can be used to carry out the foregoing are commonly known in the art.

[0239] It will be appreciated by the ordinarily skilled practitioner that, in one embodiment, antagonists are identified by conducting the A or G assays in the presence and absence of a known or candidate antagonist. When decreased binding is observed in the presence of a compound, that compound is identified as an antagonist. Increased binding in the presence of a compound signifies that the compound is an agonist.

[0240] For example, in one assay, a test compound can be identified as an inhibitor (antagonist) of binding between a PDZ protein and a PL protein by contacting a PDZ domain polypeptide and a PL peptide in the presence and absence of the test compound, under conditions in which they would (but for the presence of the test compound) form a complex, and detecting the formation of the complex in the presence and absence of the test compound. It will be appreciated that less complex formation in the presence of the test compound than in the absence of the compound indicates that the test compound is an inhibitor of a PDZ protein -PL protein binding.

[0241] In one embodiment, the "G" assay is used in the presence or absence of a candidate inhibitor. In one embodiment, the "A" assay is used in the presence or absence of a candidate inhibitor.

[0242] In one embodiment (in which a G assay is used), one or more PDZ domain-containing GST-fusion proteins are bound to the surface of wells of a 96-well plate as described supra (with appropriate controls including nonfusion GST protein). All fusion proteins are bound in multiple wells so that appropriate controls and statistical analysis can be done. A test compound in BSA/PBS (typically at multiple different concentrations) is added to wells. Immediately thereafter, 30 uL of a detectably labeled (e.g., biotinylated) peptide known to bind to the relevant PDZ domain (see, e.g., TABLE 4) is added in each of the wells at a final concentration of, e.g., between about 2 uM and about 40 uM, typically 5 uM, 15 uM, or 25 uM. This mixture is then allowed to react with the PDZ fusion protein bound to the surface for 10 minutes at 4° C. followed by 20 minutes at 25° C. The surface is washed free of unbound peptide three times with ice cold PBS and the amount of binding of the peptide in the presence and absence of the test compound is determined. Usually, the level of binding is measured for each set of replica wells (e.g. duplicates) by subtracting the mean GST alone background from the mean of the raw measurement of peptide binding in these wells.

[0243] In an alternative embodiment, the A assay is carried out in the presence or absence of a test candidate to identify inhibitors of PL-PDZ interactions.

[0244] In one embodiment, a test compound is determined to be a specific inhibitor of the binding of the PDZ domain (P) and a PL (L) sequence when, at a test compound concentration of less than or equal to 1 mM (e.g., less than or equal to: 500 uM, 100 uM, 10 uM, 1 uM, 100 nM or 1 nM) the binding of P to L in the presence of the test compound less than about 50% of the binding in the absence of the test compound. (in various embodiments, less than about 25%, less than about 10%, or less than about 1%). Preferably, the net signal of binding of P to L in the presence of the test compound plus six (6) times the standard error of the signal in the presence of the test compound is less than the binding signal in the absence of the test compound.

[0245] In one embodiment, assays for an inhibitor are carried out using a single PDZ protein-PL protein pair (e.g., a PDZ domain fusion protein and a PL peptide). In a related embodiment, the assays are carried out using a plurality of pairs, such as a plurality of different pairs listed in TABLE 4.

[0246] In some embodiments, it is desirable to identify compounds that, at a given concentration, inhibit the binding of one PL-PDZ pair, but do not inhibit (or inhibit to a lesser degree) the binding of a specified second PL-PDZ pair. These antagonists can be identified by carrying out a series of assays using a candidate inhibitor and different PL-PDZ pairs (e.g., as shown in the matrix of TABLE 4) and comparing the results of the assays. All such pairwise combinations are contemplated by the invention (e.g., test compound inhibits binding of PL₁ to PDZ₁ to a greater degree than it inhibits binding of PL₁ to PDZ₂ or PL₂ to PDZ₂). Importantly, it will be appreciated that, based on the data provided in TABLE 4 and disclosed herein (and additional data that can be generated using the methods described herein) inhibitors with different specificities can readily be designed.

[0247] For example, according to the invention, the Ki ("potency") of an inhibitor of a PDZ-PL interaction can be determined. Ki is a measure of the concentration of an inhibitor required to have a biological effect. For example, administration of an inhibitor of a PDZ-PL interaction in an amount sufficient to result in an intracellular inhibitor concentration of at least between about 1 and about 100 Ki is expected to inhibit the biological response mediated by the target PDZ-PL interaction. In one aspect of the invention, the Kd measurement of PDZ-PL binding as determined using the methods supra is used in determining Ki.

[0248] Thus, in one aspect, the invention provides a method of determining the potency (Ki) of an inhibitor or suspected inhibitor of binding between a PDZ domain and a ligand by immobilizing a polypeptide comprising the PDZ domain and a non-PDZ domain on a surface, contacting the immobilized polypeptide with a plurality of different mixtures of the ligand and inhibitor, wherein the different mixtures comprise a fixed amount of ligand and different concentrations of the inhibitor, determining the amount of ligand bound at the different concentrations of inhibitor, and calculating the Ki of the binding based on the amount of ligand bound in the presence of different concentrations of the inhibitor. In an embodiment, the polypeptide is immobilized by binding the polypeptide to an immobilized immunoglobulin that binds the non-PDZ domain. This method, which is based on the "G" assay described supra, is particularly suited for high-throughput analysis of the Ki for inhibitors of PDZ-ligand interactions. Further, using this method, the inhibition of the PDZ-ligand interaction itself is measured, without distortion of measurements by avidity effects.

[0249] Typically, at least a portion of the ligand is detectably labeled to permit easy quantitation of ligand binding.

[0250] It will be appreciated that the concentration of ligand and concentrations of inhibitor are selected to allow meaningful detection of inhibition. Thus, the concentration of the ligand whose binding is to be blocked is close to or less than its binding affinity (e.g., preferably less than the 5×Kd of the interaction, more preferably less than 2×Kd, most preferably less than 1×Kd). Thus, the ligand is typically present at a concentration of less than 2 Kd (e.g., between about 0.01 Kd and about 2 Kd) and the concentrations of the test inhibitor typically range from 1 nM to 100 uM (e.g. a 4-fold dilution series with highest concentration 10 uM or 1 mM). In a preferred embodiment, the Kd is determined using the assay disclosed supra.

[0251] The Ki of the binding can be calculated by any of a variety of methods routinely used in the art, based on the amount of ligand bound in the presence of different concentrations of the inhibitor. In an illustrative embodiment, for example, a plot of labeled ligand binding versus inhibitor concentration is fit to the equation:

S_inhibitor=S₀*Ki/([I]+Ki)

[0252] where S_inhibitor is the signal of labeled ligand binding to immobilized PDZ domain in the presence of inhibitor at concentration [I] and S_o is the signal in the absence of inhibitor (i.e., [I]=0). Typically [I] is expressed as a molar concentration.

[0253] In another aspect of the invention, an enhancer (sometimes referred to as, augmentor or agonist) of binding between a PDZ domain and a ligand is identified by immobilizing a polypeptide comprising the PDZ domain and a non-PDZ domain on a surface, contacting the immobilized polypeptide with the ligand in the presence of a test agent and determining the amount of ligand bound, and comparing the amount of ligand bound in the presence of the test agent with the amount of ligand bound by the polypeptide in the absence of the test agent. At least two-fold (often at least 5-fold) greater binding in the presence of the test agent compared to the absence of the test agent indicates that the test agent is an agent that enhances the binding of the PDZ domain to the ligand. As noted supra, agents that enhance PDZ-ligand interactions are useful for disruption (dysregulation) of biological events requiring normal PDZ-ligand function (e.g., cancer cell division and metastasis, and activation and migration of immune cells).

[0254] The invention also provides methods for determining the "potency" or "K_enhancer" of an enhancer of a PDZ-ligand interaction. For example, according to the invention, the K_enhancer of an enhancer of a PDZ-PL interaction can be determined, e.g., using the Kd of PDZ-PL binding as determined using the methods described supra. K_enhancer a measure of the concentration of an enhancer expected to have a biological effect. For example, administration of an enhancer of a PDZ-PL interaction in an amount sufficient to result in an intracellular inhibitor concentration of at least between about 0.1 and about 100 K_enhancer (e.g., between about 0.5 and about 50 K_enhancer) is expected to disrupt the biological response mediated by the target PDZ-PL interaction.

[0255] Thus, in one aspect the invention provides a method of determining the potency (K_enhancer) of an enhancer or suspected enhancer of binding between a PDZ domain and a ligand by immobilizing a polypeptide comprising the PDZ domain and a non-PDZ domain on a surface, contacting the immobilized polypeptide with a plurality of different mixtures of the ligand and enhancer, wherein the different mixtures comprise a fixed amount of ligand, at least a portion of which is detectably labeled, and different concentrations of the enhancer, determining the amount of ligand bound at the different concentrations of enhancer, and calculating the potency (K_enhancer) of the enhancer from the binding based on the amount of ligand bound in the presence of different concentrations of the enhancer. Typically, at least a portion of the ligand is detectably labeled to permit easy quantitation of ligand binding. This method, which is based on the "G" assay described supra, is particularly suited for high-throughput analysis of the K_enhancer for enhancers of PDZ-ligand interactions.

[0256] It will be appreciated that the concentration of ligand and concentrations of enhancer are selected to allow meaningful detection of enhanced binding. Thus, the ligand is typically present at a concentration of between about 0.01 Kd and about 0.5 Kd and the concentrations of the test agent/enhancer typically range from 1 nM to 1 mM (e.g. a 4-fold dilution series with highest concentration 10 uM or 1 mM). In a preferred embodiment, the Kd is determined using the assay disclosed supra.

[0257] The potency of the binding can be determined by a variety of standard methods based on the amount of ligand bound in the presence of different concentrations of the enhancer or augmentor. For example, a plot of labeled ligand binding versus enhancer concentration can be fit to the equation:

S([E])=S(0)+(S(0)*(D_enhancer-1)*[E]/([E]+K_enhancer)

[0258] where "K_enhancer" is the potency of the augmenting compound, and "D_enhancer" is the fold-increase in binding of the labeled ligand obtained with addition of saturating amounts of the enhancing compound, [E] is the concentration of the enhancer. It will be understood that saturating amounts are the amount of enhancer such that further addition does not significantly increase the binding signal. Knowledge of "K_enhancer" is useful because it describes a concentration of the augmenting compound in a target cell that will result in a biological effect due to dysregulation of the PDZ-PL interaction. Typical therapeutic concentrations are between about 0.1 and about 100 K_enhancer.

[0259] For certain of the PDZ proteins and PL proteins shown to bind together and for which Kd values had been obtained, additional testing was conducted to determine whether certain pharmaceutical compounds would act to antagonize or agonize the interactions. Assays were conducted as for the G' assay described supra both in the presence and absence of test compound, except that 50 ul of a 10 uM solution of the biotinylated PL peptide is allowed to react with the surface bearing the PDZ-domain polypeptide instead of a 20 uM solution as specified in step (2) of the assay.

[0260] Another method of increasing the specificity or sensitivity of a PDZ-PL interaction is through mutagenesis and selection of high affinity or high specificity variants. Methods such as UV, chemical (e.g., EMS) or biological mutagenesis (e.g. Molecular shuffling or DNA polymerase mutagenesis) can be applied to create mutations in DNA encoding PDZ domains or PL domains. Proteins can then be made from variants and tested using a number of methods described herein (e.g., `A` assay, `G` assay or yeast two hybrid). In general, one would assay mutants for high affinity binding between the mutated PDZ domain and a test sample (such as an oncogenic E6 PL) that have reduced affinity for other cellular PLs (as described in section IX). These methods are known to those skilled in the art and examples herein are not intended to be limiting.

X. Recombinant Detector Synthesis

[0261] As indicated in the Background section, PDZ domain-containing proteins are involved in a number of biological functions, including, but not limited to, vesicular trafficking, tumor suppression, protein sorting, establishment of membrane polarity, apoptosis, regulation of immune response and organization of synapse formation. In general, this family of proteins has a common function of facilitating the assembly of multi-protein complexes, often serving as a bridge between several proteins, or regulating the function of other proteins. Additionally, as also noted supra, these proteins are found in essentially all cell types. Consequently, detection of inappropriate PDZ:PL interactions or abnormal interactions can be utilized to diagnose a wide variety of biological and physiological conditions. In particular, detection of PL proteins from pathogenic organisms can be diagnosed using PDZ domains. Most, but not all, embodiments of this invention, require the addition of a detectable marker to the PDZ or PL protein used for detection. Examples are given below.

[0262] A. Chemical Synthesis

[0263] The peptides of the invention or analogues thereof, may be prepared using virtually any art-known technique for the preparation of peptides and peptide analogues. For example, the peptides may be prepared in linear form using conventional solution or solid phase peptide syntheses and cleaved from the resin followed by purification procedures (Creighton, 1983, Protein Structures And Molecular Principles, W.H. Freeman and Co., N.Y.). Suitable procedures for synthesizing the peptides described herein are well known in the art. The composition of the synthetic peptides may be confirmed by amino acid analysis or sequencing (e.g., the Edman degradation procedure and mass spectroscopy).

[0264] In addition, analogues and derivatives of the peptides can be chemically synthesized. The linkage between each amino acid of the peptides of the invention may be an amide, a substituted amide or an isostere of amide. Nonclassical amino acids or chemical amino acid analogues can be introduced as a substitution or addition into the sequence. Non-classical amino acids include, but are not limited to, the D-isomers of the common amino acids, α-amino isobutyric acid, 4-aminobutyric acid, Abu, 2-amino butyric acid, γ-Abu, ε-Ahx, 6-amino hexanoic acid, Aib, 2-amino isobutyric acid, 3-amino propionic acid, ornithine, norleucine, norvaline, hydroxyproline, sarcosine, citrulline, cysteic acid, t-butylglycine, t-butylalanine, phenylglycine, cyclohexylalanine, β-alanine, fluoro-amino acids, designer amino acids such as β-methyl amino acids, Cα-methyl amino acids, Nα-methyl amino acids, and amino acid analogues in general. Furthermore, the amino acid can be D (dextrorotary) or L (levorotary).

[0265] B. Recombinant Synthesis

[0266] If the peptide is composed entirely of gene-encoded amino acids, or a portion of it is so composed, the peptide or the relevant portion may also be synthesized using conventional recombinant genetic engineering techniques. For recombinant production, a polynucleotide sequence encoding a linear form of the peptide is inserted into an appropriate expression vehicle, i.e., a vector which contains the necessary elements for the transcription and translation of the inserted coding sequence, or in the case of an RNA viral vector, the necessary elements for replication and translation. The expression vehicle is then transfected into a suitable target cell which will express the peptide. Depending on the expression system used, the expressed peptide is then isolated by procedures well-established in the art. Methods for recombinant protein and peptide production are well known in the art (see, e.g., Maniatis et al., 1989, Molecular Cloning A Laboratory Manual, Cold Spring Harbor Laboratory, N.Y.; and Ausubel et al., 1989, Current Protocols in Molecular Biology, Greene Publishing Associates and Wiley Interscience, N.Y.).

[0267] A variety of host-expression vector systems may be utilized to express the peptides described herein. These include, but are not limited to, microorganisms such as bacteria transformed with recombinant bacteriophage DNA or plasmid DNA expression vectors containing an appropriate coding sequence; yeast or filamentous fungi transformed with recombinant yeast or fungi expression vectors containing an appropriate coding sequence; insect cell systems infected with recombinant virus expression vectors (e.g., baculovirus) containing an appropriate coding sequence; plant cell systems infected with recombinant virus expression vectors (e.g., cauliflower mosaic virus or tobacco mosaic virus) or transformed with recombinant plasmid expression vectors (e.g., Ti plasmid) containing an appropriate coding sequence; or animal cell systems.

[0268] In some embodiments, increasing the number of copies of a PL detector may be used to increase the specificity or sensitivity of detection. An example of this is presented in EXAMPLE 4. The TIP-TIP-IgG vector produces a fusion protein that has duplicated copies of the PDZ domain from TIP-1 and the protein itself should dimerize on the basis of the IgG constant region backbone. Hence, a single protein contains 2-4 copies of the TIP-1 PDZ domain. In a similar manner, addition tandem repeats of PL detectors could be fashioned. In some embodiments, different PDZ domains from different proteins could be engineered to express as a single protein (e.g., the PDZ domains of TIP-1 and MAGI-1 could be engineered to detect oncogenic HPV E6 proteins). In a similar manner, a different Ig backbone could be used to increase the avidity of a construct. For example, the IgG constant regions will dimerize with itself, but the IgM constant regions will form a complex of ten monomers.

[0269] The expression elements of the expression systems vary in their strength and specificities. Depending on the host/vector system utilized, any of a number of suitable transcription and translation elements, including constitutive and inducible promoters, may be used in the expression vector. For example, when cloning in bacterial systems, inducible promoters such as pL of bacteriophage λ, plac, ptrp, ptac (ptrp-lac hybrid promoter) and the like may be used; when cloning in insect cell systems, promoters such as the baculovirus polyhedron promoter may be used; when cloning in plant cell systems, promoters derived from the genome of plant cells (e.g., heat shock promoters; the promoter for the small subunit of RUBISCO; the promoter for the chlorophyll a/b binding protein) or from plant viruses (e.g., the 35S RNA promoter of CaMV; the coat protein promoter of TMV) may be used; when cloning in mammalian cell systems, promoters derived from the genome of mammalian cells (e.g., metallothionein promoter) or from mammalian viruses (e.g., the adenovirus late promoter; the vaccinia virus 7.5 K promoter) may be used; when generating cell lines that contain multiple copies of expression product, SV40-, BPV- and EBV-based vectors may be used with an appropriate selectable marker.

[0270] In cases where plant expression vectors are used, the expression of sequences encoding the peptides of the invention may be driven by any of a number of promoters. For example, viral promoters such as the 35S RNA and 19S RNA promoters of CaMV (Brisson et al., 1984, Nature 310:511-514), or the coat protein promoter of TMV (Takamatsu et al., 1987, EMBO J. 6:307-311) may be used; alternatively, plant promoters such as the small subunit of RUBISCO (Coruzzi et al., 1984, EMBO J. 3:1671-1680; Broglie et al., 1984, Science 224:838-843) or heat shock promoters, e.g., soybean hsp17.5-E or hsp17.3-B (Gurley et al., 1986, Mol. Cell. Biol. 6:559-565) may be used. These constructs can be introduced into planleukocytes using Ti plasmids, Ri plasmids, plant virus vectors, direct DNA transformation, microinjection, electroporation, etc. For reviews of such techniques see, e.g., Weissbach & Weissbach, 1988, Methods for Plant Molecular Biology, Academic Press, NY, Section VIII, pp. 421-463; and Grierson & Corey, 1988, Plant Molecular Biology, 2d Ed., Blackie, London, Ch. 7-9.

[0271] In one insect expression system that may be used to produce the peptides of the invention, Autographa californica nuclear polyhidrosis virus (AcNPV) is used as a vector to express the foreign genes. The virus grows in Spodoptera frugiperda cells. A coding sequence may be cloned into non-essential regions (for example the polyhedron gene) of the virus and placed under control of an AcNPV promoter (for example, the polyhedron promoter). Successful insertion of a coding sequence will result in inactivation of the polyhedron gene and production of non-occluded recombinant virus (i.e., virus lacking the proteinaceous coat coded for by the polyhedron gene). These recombinant viruses are then used to infect Spodoptera frugiperda cells in which the inserted gene is expressed. (e.g., see Smith et al., 1983, J. Virol. 46:584; Smith, U.S. Pat. No. 4,215,051). Further examples of this expression system may be found in Current Protocols in Molecular Biology, Vol. 2, Ausubel et al., eds., Greene Publish. Assoc. & Wiley Interscience.

[0272] In mammalian host cells, a number of viral based expression systems may be utilized. In cases where an adenovirus is used as an expression vector, a coding sequence may be ligated to an adenovirus transcription/translation control complex, e.g., the late promoter and tripartite leader sequence. This chimeric gene may then be inserted in the adenovirus genome by in vitro or in vivo recombination. Insertion in a non-essential region of the viral genome (e.g., region E1 or E3) will result in a recombinant virus that is viable and capable of expressing peptide in infected hosts. (e.g., See Logan & Shenk, 1984, Proc. Natl. Acad. Sci. USA 81:3655-3659). Alternatively, the vaccinia 7.5 K promoter may be used, (see, e.g., Mackett et al., 1982, Proc. Natl. Acad. Sci. USA 79:7415-7419; Mackett et al., 1984, J. Virol. 49:857-864; Panicali et al., 1982, Proc. Natl. Acad. Sci. USA 79:4927-4931).

[0273] Other expression systems for producing linear peptides of the invention will be apparent to those having skill in the art.

[0274] C. Tags or Markers

[0275] Tags and markers are frequently used to aid in purification of components or detection of biological molecules. Examples of biological tags include, but are not limited to, glutathione-S-transferase, maltose binding protein, Immunoglobulin domains, Intein, Hemagglutinin epitopes, myc epitopes, etc. Examples of chemical tags include, but are not limited to, biotin, gold, paramagnetic particles or fluorophores. These examples can be used to identify the presence of proteins or compounds they are attached to or can be used by those skilled in the art to purify proteins or compounds from complex mixtures.

[0276] D. Purification of the Peptides and Peptide Analogues

[0277] The peptides and peptide analogues of the invention can be purified by art-known techniques such as high performance liquid chromatography, ion exchange chromatography, gel electrophoresis, affinity chromatography and the like. The actual conditions used to purify a particular peptide or analogue will depend, in part, on factors such as net charge, hydrophobicity, hydrophilicity, etc., and will be apparent to those having skill in the art. The purified peptides can be identified by assays based on their physical or functional properties, including radioactive labeling followed by gel electrophoresis, radioimmuno-assays, ELISA, bioassays, and the like.

XI. Kits

[0278] The present invention also includes kits for carrying out the methods of the invention. A subject kit usually contains a first and a second oncogenic HPV E6 binding partner. In most embodiments, the first binding partner is a PDZ domain polypeptide, and, the second binding partner is at least one antibody for E6. In some embodiments, the second binding partner is labeled with a detectable label. In other embodiments, a secondary labeling component, such as a detectably labeled secondary antibody, is included. In some embodiments, a subject kit further comprises a means, such as a device or a system, for isolating oncogenic HPV E6 from the sample. The kit may optionally contain proteasome inhibitor.

[0279] A subject kit can further include, if desired, one or more of various conventional components, such as, for example, containers with one or more buffers, detection reagents or antibodies. Printed instructions, either as inserts or as labels, indicating quantities of the components to be used and guidelines for their use, can also be included in the kit. In the present disclosure it should be understood that the specified materials and conditions are important in practicing the invention but that unspecified materials and conditions are not excluded so long as they do not prevent the benefits of the invention from being realized. Exemplary embodiments of the diagnostic methods of the invention are described above in detail.

[0280] In a subject kit, the oncogenic E6 detection reaction may be performed using an aqueous or solid substrate, where the kit may comprise reagents for use with several separation and detection platforms such as test strips, sandwich assays, etc. In many embodiments of the test strip kit, the test strip has bound thereto a PDZ domain polypeptide that specifically binds the PL domain of an oncogenic E6 protein and captures oncogenic E6 protein on the solid support. In some embodiments, the kit further comprises a detection antibody or antibodies, which is either directly or indirectly detectable, and which binds to the oncogenic E6 protein to allow its detection. Kits may also include components for conducting western blots (e.g., pre-made gels, membranes, transfer systems, etc.); components for carrying out ELISAs (e.g., 96-well plates); components for carrying out immunoprecipitation (e.g. protein A); columns, especially spin columns, for affinity or size separation of oncogenic E6 protein from a sample (e.g. gel filtration columns, PDZ domain polypeptide columns, size exclusion columns, membrane cut-off spin columns etc.).

[0281] Subject kits may also contain control samples containing oncogenic or non-oncogenic E6, and/or a dilution series of oncogenic E6, where the dilution series represents a range of appropriate standards with which a user of the kit can compare their results and estimate the level of oncogenic E6 in their sample. Such a dilution series may provide an estimation of the progression of any cancer in a patient. Fluorescence, color, or autoradiological film development results may also be compared to a standard curves of fluorescence, color or film density provided by the kit.

[0282] In addition to above-mentioned components, the subject kits typically further include instructions for using the components of the kit to practice the subject methods. The instructions for practicing the subject methods are generally recorded on a suitable recording medium. For example, the instructions may be printed on a substrate, such as paper or plastic, etc. As such, the instructions may be present in the kits as a package insert, in the labeling of the container of the kit or components thereof (i.e., associated with the packaging or subpackaging) etc. In other embodiments, the instructions are present as an electronic storage data file present on a suitable computer readable storage medium, e.g. CD-ROM, diskette, etc. In yet other embodiments, the actual instructions are not present in the kit, but means for obtaining the instructions from a remote source, e.g. via the interne, are provided. An example of this embodiment is a kit that includes a web address where the instructions can be viewed and/or from which the instructions can be downloaded. As with the instructions, this means for obtaining the instructions is recorded on a suitable substrate.

[0283] Also provided by the subject invention is are kits including at least a computer readable medium including programming as discussed above and instructions. The instructions may include installation or setup directions. The instructions may include directions for use of the invention with options or combinations of options as described above. In certain embodiments, the instructions include both types of information.

[0284] Providing the software and instructions as a kit may serve a number of purposes. The combination may be packaged and purchased as a means for producing rabbit antibodies that are less immunogenic in a non-rabbit host than a parent antibody, or nucleotide sequences them.

[0285] The instructions are generally recorded on a suitable recording medium. For example, the instructions may be printed on a substrate, such as paper or plastic, etc. As such, the instructions may be present in the kits as a package insert, in the labeling of the container of the kit or components thereof (i.e., associated with the packaging or subpackaging), etc. In other embodiments, the instructions are present as an electronic storage data file present on a suitable computer readable storage medium, e.g., CD-ROM, diskette, etc, including the same medium on which the program is presented.

[0286] Methods of Determining if a Subject is Infected with an Oncogenic Strain of HPV

[0287] The present invention provides methods of detecting oncogenic HPV E6 protein in a sample and finds utility in diagnosing HPV infection in a subject. In many embodiment, a biological sample is obtained from a subject, and, the presence of oncogenic HPV E6 protein in the sample is determined. The presence of a detectable amount of oncogenic HPV E6 protein in a sample indicates indicates that the individual is infected with a oncogenic strain of HPV. In other embodiments, the level of oncogenic HPV E6 protein in a biological sample is determined, and compared to the amount of a control in the sample. The relative amount of oncogenic HPV E6 protein in a sample indicates the severity of the infection by HPV.

[0288] The methods generally involve two binding partners of oncogenic HPV E6 protein, one of which is a PDZ domain polypeptide, as described above. In general, the methods involve a) isolating the oncogenic HPV E6 protein from a sample using one of the binding partners, and b) detecting the oncogenic HPV E6 protein with the other binding partner.

[0289] Isolating Oncogenic HPV E6 Protein

[0290] In general, methods of the invention involve at least partially separating (i.e., isolating) native oncogenic HPV E6 protein from other proteins in a sample. This separation is usually achieved using a first binding partner for the oncogenic HPV E6. In many embodiments, the first binding partner is a PDZ domain polypeptide, or, in other embodiments an anti-HPV E6 antibody or mixture of antibodies.

[0291] In certain embodiments, one of the oncogenic HPV E6 binding partners is bound, directly or via a linker, to an insoluble support. For example, a PDZ domain polypeptide may contain a PDZ domain that is fused to a fusion partner, as described herein, and that fusion partner is bound to a solid support directly via a chemical bond, or indirectly, via a tether or linker (e.g., a flexible linker, an antibody, or other binding moiety). In most embodiments, the PDZ domain polypeptide is covalently bound to the solid support. Solid supports are known in the art and include, but are not limited to, a bead (e.g, magnetic beads, polystyrene beads, and the like); a membrane; and the like. In one non-limiting example, a PDZ domain polypeptide is bound to a magnetic bead. The PDZ domain polypeptide bound to the magnetic bead is contacted with the sample, and, after a complex is formed between the antibody and any E6 protein in the sample, a magnetic field is applied, such that the complex is removed from the sample. Where the PDZ domain polypeptide is bound to an insoluble support, such as a membrane, E6 protein bound to the PDZ domain polypeptide is removed from the sample by removing the membrane, or by transferring the sample to a separate container. Where the PDZ domain polypeptide is bound to a bead, the E6 protein bound to the bead is removed from the sample by centrifugation or filtration. Such embodiments are envisioned using a different E6 binding partner, e.g., an anti-E6 antibody.

[0292] In general, a suitable separation means is used with a suitable platform for performing the separation. For example, where oncogenic HPV E6 is separated by binding to PDZ domain polypeptides, the separation is performed using any of a variety of platforms, including, but not limited to, affinity column chromatography, capillary action or lateral flow test strips, immunoprecipitation, etc.

[0293] In many embodiments, oncogenic HPV E6 is separated from other proteins in the sample by applying the sample to one end of a test strip, and allowing the proteins to migrate by capillary action or lateral flow. Methods and devices for lateral flow separation, detection, and quantitation are known in the art. See, e.g., U.S. Pat. Nos. 5,569,608; 6,297,020; and 6,403,383. In these embodiments, a test strip comprises, in order from proximal end to distal end, a region for loading the sample (the sample-loading region) and a test region containing an oncogenic E6 protein binding partner, e.g., a region containing an PDZ domain polypeptide or, in other embodiments, a region containing an anti-E6 antibody. The sample is loaded on to the sample-loading region, and the proximal end of the test strip is placed in a buffer. oncogenic E6 protein is captured by the bound antibody in the first test region. Detection of the captured oncogenic E6 protein is carried out as described below. For example, detection of captured E6 proteins is carried out using detectably labeled antibody specific for an epitope of E6 proteins that is common to all oncogenic E6 proteins, or a mixture of antibodies that can, together, bind to all oncogenic E6 proteins. In alternative embodiments, an E6 antibody may be present in the test region and detection of oncogenic E6 bound to the E6 antibody uses a labeled PDZ domain polypeptide.

[0294] Detecting and Quantitating Oncogenic E6 Protein

[0295] Once oncogenic E6 protein is separated from other proteins in the sample, oncogenic E6 protein is detected and/or the level or amount of oncogenic E6 protein is determined (e.g., measured). As discussed above, oncogenic E6 protein is generally detected using a binding partner, e.g. an antibody or antibodies specific to E6, or a PDZ domain polypeptide.

[0296] Detection with a specific antibody is carried out using well-known methods. In general, the binding partner is detectably labeled, either directly or indirectly. Direct labels include radioisotopes (e.g., ¹²⁵I; ³⁵S and the like); enzymes whose products are detectable (e.g., luciferase, β-galactosidase, horse radish peroxidase, and the like); fluorescent labels (e.g., fluorescein isothiocyanate, rhodamine, phycoerythrin, and the like); fluorescence emitting metals, e.g., ¹⁵²Eu, or others of the lanthanide series, attached to the antibody through metal chelating groups such as EDTA; chemiluminescent compounds, e.g., luminol, isoluminol, acridinium salts, and the like; bioluminescent compounds, e.g., luciferin; fluorescent proteins; and the like. Fluorescent proteins include, but are not limited to, a green fluorescent protein (GFP), including, but not limited to, a "humanized" version of a GFP, e.g., wherein codons of the naturally-occurring nucleotide sequence are changed to more closely match human codon bias; a GFP derived from Aequoria victoria or a derivative thereof, e.g., a "humanized" derivative such as Enhanced GFP, which are available commercially, e.g., from Clontech, Inc.; a GFP from another species such as Renilla reniformis, Renilla mulleri, or Ptilosarcus guernyi, as described in, e.g., WO 99/49019 and Peelle et al. (2001) J. Protein Chem. 20:507-519; "humanized" recombinant GFP (hrGFP) (Stratagene); any of a variety of fluorescent and colored proteins from Anthozoan species, as described in, e.g., Matz et al. (1999) Nature Biotechnol. 17:969-973; and the like.

[0297] Indirect labels include second antibodies specific for E6-specific antibodies, wherein the second antibody is labeled as described above; and members of specific binding pairs, e.g., biotin-avidin, and the like.

[0298] In some embodiments, a level of oncogenic E6 is quantitated. Quantitation can be carried out using any known method, including, but not limited to, enzyme-linked immunosorbent assay (ELISA); radioimmunoassay (RIA); and the like. In general, quantitation is accomplished by comparing the level of expression product detected in the sample with a standard curve.

[0299] In some embodiments, oncogenic HPV E6 is separated on a test strip, as described above. In these embodiments, oncogenic HPV E6 is detected using a detectably labeled binding partner that binds oncogenic HPV E6. Oncogenic HPV E6 may be quantitated using a reflectance spectrophotometer, or by eye, for example.

Biological Samples

[0300] Biological samples to be analyzed using the methods of the invention are obtained from any mammal, e.g., a human or a non-human animal model of HPV. In many embodiments, the biological sample is obtained from a living subject.

[0301] In some embodiments, the subject from whom the sample is obtained is apparently healthy, where the analysis is performed as a part of routine screening. In other embodiments, the subject is one who is susceptible to HPV, (e.g., as determined by family history; exposure to certain environmental factors; etc.). In other embodiments, the subject has symptoms of HPV (e.g., cervical warts, or the like). In other embodiments, the subject has been provisionally diagnosed as having HPV (e.g. as determined by other tests based on e.g., PCR).

[0302] The biological sample may be derived from any tissue, organ or group of cells of the subject. In some embodiments a cervical scrape, biopsy, or lavage is obtained from a subject.

[0303] In some embodiments, the biological sample is processed, e.g., to remove certain components that may interfere with an assay method of the invention, using methods that are standard in the art. In some embodiments, the biological sample is processed to enrich for proteins, e.g., by salt precipitation, and the like. In certain embodiments, the sample is processed in the presence proteasome inhibitor to inhibit degradation of the E6 protein.

[0304] In the assay methods of the invention, in some embodiments, the level of E6 protein in a sample may be quantified and/or compared to controls. Suitable control samples are from individuals known to be healthy, e.g., individuals known not to have HPV. Control samples can be from individuals genetically related to the subject being tested, but can also be from genetically unrelated individuals. A suitable control sample also includes a sample from an individual taken at a time point earlier than the time point at which the test sample is taken, e.g., a biological sample taken from the individual prior to exhibiting possible symptoms of HPV.

[0305] Utility

[0306] The methods of the instant invention are useful for a variety of diagnostic analyses. The instant methods are useful for diagnosing infection by an oncogenic strain of HPV in an individual; for determining the likelihood of having cancer; for determining a patient's response to treatment for HPV; for determining the severity of HPV infection in an individual; and for monitoring the progression of HPV in an individual.

[0307] The subject methods may generally be performed on biological samples from living subjects. A particularly advantageous feature of the invention is that the methods can simultaneously detect, in one reaction, all known oncogenic strains of HPV.

EXAMPLES

Example 1

Sequence Analysis of HPV E6 Proteins to Determine Oncogenic Potential

[0308] PDZ proteins are known to bind certain carboxyl-terminal sequences of proteins (PLs). PL sequences that bind PDZ domains are predictable, and have been described in greater detail in U.S. patent application Ser. Nos. 09/710,059, 09/724,553 and 09/688,017. One of the major classes of PL motifs is the set of proteins terminating in the sequences -X-(S/T)-X-(V/I/L). We have examined the C-terminal sequences of E6 proteins from a number of HPV strains. All of the strains determined to be oncogenic by the National Cancer Institute exhibit a consensus PDZ binding sequence. Those E6 proteins from papillomavirus strains that are not cancerous lack a sequence that would be predicted to bind to PDZ domains, thus suggesting that interaction with PDZ proteins is a prerequisite for causing cancer in humans. This correlation between presence of a PL and ability to cause cancer is 100% in the sequences examined (Table 3A). In theory, with the disclosed PL consensus sequences from the patents listed supra, new variants of HPVs can be assessed for their ability to bind PDZ proteins and oncogenicity can be predicted on the basis of whether a PL is present. Earlier this year, five new oncogenic strains of Human papillomavirus were identified and their E6 proteins sequenced. As predicted, these proteins all contain a PL consensus sequence (Table 3B).

TABLE-US-00003 TABLE 3A Correlation of E6 PDZ-ligands and oncogenicity HPV E6 C-terminal PL Seq strain sequence yes/no oncogenic ID No HPV 4 GYCRNCIRKQ No No 221 HPV 11 WTTCMEDLLP No No 222 HPV 20 GICRLCKHFQ No No 223 HPV 24 KGLCRQCKQI No No 224 HPV 28 WLRCTVRIPQ No No 225 HPV 36 RQCKHFYNDW No No 226 HPV 48 CRNCISHEGR No No 227 HPV 50 CCRNCYEHEG No No 228 HPV 16 SSRTRRETQL Yes Yes 229 HPV 18 RLQRRRETQV Yes Yes 230 HPV 31 WRRPRTETQV Yes Yes 231 HPV 35 WKPTRRETEV Yes Yes 232 HPV 30 RRTLRRETQV Yes Yes 233 HPV 39 RRLTRRETQV Yes Yes 234 HPV 45 RLRRRRETQV Yes Yes 235 HPV 51 RLQRRNETQV Yes Yes 236 HPV 52 RLQRRRVTQV Yes Yes 237 HPV 56 TSREPRESTV Yes Yes 238 HPV 59 QRQARSETLV yes Yes 239 HPV 58 RLQRRRQTQV Yes Yes 240 HPV 33 RLQRRRETAL Yes Yes 241 HPV 66 TSRQATESTV Yes Yes* 242 HPV 68 RRRTRQETQV Yes Yes 243 HPV 69 RRREATETQV Yes Yes 244 Table 3A: E6 C-terminal sequences and oncogenicity. HPV variants are listed at the left. Sequences were identified from Genbank sequence records. PL Yes/No was defined by a match or non-match to the consenses determined at Arbor Vita and by Songyang et al. -X-(S/T)-X-(V/I/L). Oncogenicity data collected from National Cancer Institute. *Only found in oncogenic strains co-transfected with other oncogenic proteins.

TABLE-US-00004 TABLE 3B Correlation of recently identified oncogenic E6 proteins HPV E6 C-terminal PL Seq strain sequence yes/no oncogenic ID No HPV 26 RPRRQTETQV Yes Yes 245 HPV 53 RHTTATESAV Yes Yes 246 HPV 66 TSRQATESTV Yes Yes 247 HPV 73 RCWRPSATVV Yes Yes 248 HPV 82 PPRQRSETQV Yes Yes 249 Table 3B: E6 C-terminal sequences and oncogenicity. HPV variants are listed at the left. Sequences were identified from Genbank sequence records. PL Yes/No was defined by a match or non-match to the consenses determined at Arbor Vita and by Songyang et al. -X-(S/T)-X-(V/I/L). Oncogenicity data on new strains collected from N Engl J Med 2003; 348: 518-527.

[0309] These tables provide a classification of the HPV strains based on the sequence of the C-terminal four amino acids of the E6 protein encoded by the HPV genome. The 21 oncogenic strains of HPV fall into one of 10 classes, and HPV strains not specifically listed above may also fall into these classes. As such, it is desirable to detect HPV strains from all 10 classes: the instant methods provide such detection.

Example 2

Identification of PDZ Domains that Interact with the C-Termini of Oncogenic E6 Proteins

[0310] In order to determine the PDZ domains that can be used to detect oncogenic E6 proteins in a diagnostic assay, the `G assay` (described supra) was used to identify interactions between E6 PLs and PDZ domains. Peptides were synthesized corresponding to the C-terminal amino acid sequences of E6 proteins from oncogenic strains of human papillomavirus. These peptides were assessed for the ability to bind PDZ domains using the G-assay described above and PDZ proteins synthesized from the expression constructs described in greater detail in U.S. patent application Ser. Nos. 09/710,059, 09/724,553 and 09/688,017. Results of these assays that show a high binding affinity are listed in Table 4 below.

[0311] As we can see below, there a large number of PDZ domains that bind some of the oncogenic E6 proteins. However, only the second PDZ domain from MAGI-1 seems to bind all of the oncogenic E6 PLs tested. The PDZ domain of TIP-1 binds all but one of the oncogenic E6 PLs tested, and may be useful in conjunction with MAGI-1 domain 2 for detecting the presence of oncogenic E6 proteins.

[0312] In a similar manner, peptides corresponding to the C-terminal ends of several non-oncogenic E6 proteins were tested with the G-assay. None of the peptides showed any affinity for binding PDZ domains.

TABLE-US-00005 TABLE 4 higher affinity interactions between HPV E6 PLs and PDZ domains HPV PDZ binding partner HPV PDZ binding partner strain (signal 4 and 5 of 0-5) strain (signal 4 and 5 of 0-5) HPV 35 Atrophin-1 interact. prot. HPV 33 Magi1 (PDZ #2) (TEV) (PDZ # 1, 3, 5) (TAL) TIP1 Magi1 (PDZ # 2, 3, 4, 5) DLG1 Lim-Ril Vartul (PDZ #1) FLJ 11215 KIAA 0807 MUPP-1 (PDZ #10) KIAA 1095 (Semcap3) KIAA 1095 (PDZ #1) (PDZ #1) PTN-4 KIAA 1934 (PDZ #1) INADL (PDZ #8) NeDLG (PDZ #1, 2) Vartul (PDZ # 1, 2, 3) Rat outer membrane Syntrophin-1 alpha (PDZ #1) Syntrophin gamma-1 PSD 95 (PDZ #3 and TAX IP2 1-3) KIAA 0807 KIAA 1634 (PDZ #1) DLG1 (PDZ1, 2) NeDLG (1, 2, 3,) Sim. Rat outer membrane (PDZ #1) MUPP-1 (PDZ #13) PSD 95 (1, 2, 3) HPV 58 Atrophin-1 interact. HPV 66 DLG1 (PDZ #1, 2) (TQV) prot. (PDZ # 1) (STV) NeDLG (PDZ #2) Magi1 (PDZ #2) PSD 95 (PDZ #1, 2, 3) DLG1 (PDZ1, 2) Magi1 (PDZ #2) DLG2 (PDZ #2) KIAA 0807 KIAA 0807 KIAA 1634 (PDZ #1) KIAA 1634 (PDZ #1) DLG2 (PDZ #2) NeDLG (1, 2) Rat outer membrane Sim. Rat outer membrane (PDZ #1) (PDZ #1) NeDLG (1, 2) PSD 95 (1, 2, 3) TIP-1 INADL (PDZ #8) TIP-1 HPV 16* TIP-1 HPV 52 Magi1 (PDZ #2) (TQL) Magi1 (PDZ #2) (TQV) HPV 18* TIP1 (TQV) Magi 1 (PDZ #2) Table 4: Interactions between the E6 C-termini of several HPV variants and human PDZ domains. HPV strain denotes the strain from which the E6 C-terminal peptide sequence information was taken. Peptides used in the assay varied from 18 to 20 amino acids in length, and the terminal four residues are listed in parenthesis. Names to the right of each HPV E6 variant denote the human PDZ domain(s) (with domain number in parenthesis for proteins with multiple PDZ domains) that saturated binding with the E6 peptide in the G assay (See Description of the Invention). *denotes that the PDZ domains of hDlg1 were not tested against these proteins yet due to limited material, although both have been shown to bind hDlg1 in the literature.

Example 3

Generation of Eukaryotic Expression Constructs Bearing DNA Fragments that Encode HPV E6 Genes or Portions of HPV E6 Genes

[0313] This example describes the cloning of HPV E6 genes or portions of HPV E6 genes into eukaryotic expression vectors in fusion with a number of protein tags, including but not limited to Glutathione S-Transferase (GST), Enhanced Green Fluorescent Protein (EGFP), or Hemagglutinin (HA).

[0314] A. Strategy

[0315] cDNA fragments were generated by RT-PCR from HPV cell line (cervical epidermoid carcinoma, ATCC# CRL-1550 and CRL-1595 for HPV E6 16 and 18, respectively) derived RNA, using random (oligo-nucleotide) primers (Invitrogen Cat.#48190011). DNA fragments corresponding to HPV E6 were generated by standard PCR, using above purified cDNA fragments and specific primers (see Table 5). Primers used were designed to create restriction nuclease recognition sites at the PCR fragment's ends, to allow cloning of those fragments into appropriate expression vectors. Subsequent to PCR, DNA samples were submitted to agarose gel electrophoresis. Bands corresponding to the expected size were excised. DNA was extracted by Sephaglas Band Prep Kit (Amersham Pharmacia Cat#27-9285-01) and digested with appropriate restriction endonuclease. Digested DNA samples were purified once more by gel electrophoresis, according to the same protocol used above. Purified DNA fragments were coprecipitated and ligated with the appropriate linearized vector. After transformation into E. coli, bacterial colonies were screened by colony PCR and restriction digest for the presence and correct orientation of insert. Positive clones were innoculated in liquid culture for large scale DNA purification. The insert and flanking vector sites from the purified plasmid DNA were sequenced to ensure correct sequence of fragments and junctions between the vectors and fusion proteins.

[0316] B. Vectors:

[0317] Cloning vectors were pGEX-3X (Amersham Pharmacia #27-4803-01), MIE (a derivative of MSCV, containing IRES and EGFP, generated by recombinant DNA technology), pmKit, pcDNA3.1 (Invitrogen, modified to include a HA tag upstream of the cloning site) and pMAL (New England Biolabs Cat# N8076S, polylinker modified in house to include BamH1 and EcoR1 sites).

[0318] DNA fragments containing the ATG-start codon and the TAG-stop codon of HPV E6 were cloned into pGEX3x. HPV E6 genes, and 3' truncated (APL) versions, were subsequently cloned into MIE (MSCV-IRES-EGFP) vector, pcDNA-HA vector, and pmKit vector, using the purified HPV E6-pGEX3x fusion plasmid as the PCR template, and using the same purification protocols as listed above. Truncated versions of HPV E6 have a stop codon inserted after the -3 position amino acid, so as to delete the last three amino acids from the coding region of the gene.

[0319] C. Constructs:

[0320] Primers used to generate DNA fragments by PCR are listed in Table 5. PCR primer combinations and restriction sites for insert and vector are listed below.

TABLE-US-00006 TABLE 5 Primers used in cloning of HPV E6 into representative expression vectors. ID# (Primer Seq Name) Primer Sequence Description ID 2548 AAAAGATCTACAATACTAT Forward (5' to 3') primer corresponding to HPV E6 18, 250 (1054EF) GGCGC generates a Bgl II site. Used for cloning into pGEX3x. 2549 AGGGAATTCCAGACTTAAT Reverse (3' to 5') primer corresponding to HPV E6 18, 251 (1058ER) ATTATAC generates an EcoR1 site. Used for cloning into pGEX3x. 2542 AAAGGATCCATTTTATGCA Forward (5' to 3') primer corresponding to HPV E6 16, 252 (1050EF) CCAAAAG generates a BamH1 site. Used for cloning into pGEX3x. 2543 ATGGAATTCTATCTCCATG Reverse (3' to 5') primer corresponding to HPV E6 16, 253 (1051ER) CATGATTAC generates an EcoR1 site. Used for cloning into pGEX3x. 2563 GAGGAATTCACCACAATAC Forward (5' to 3') primer corresponding to HPV E6 18, 254 (1071EF) TATGGCG generates an EcoR1 site. Used for cloning into MIE. 2564 AGGAGATCTCATACTTAAT Reverse (3' to 5') primer corresponding to HPV E6 18, 255 (1072ER) ATTATAC generates a Bgl II site. Used for cloning into MIE. 2565 TTGAGATCTTCAGCGTCGT Reverse (3' to 5') primer corresponding to HPV E6 18 ΔPL, 256 (1073ERPL) TGGAGTCG generates a Bgl II site. Used for cloning into MIE. 2560 AAAGAATTCATTTTATGCA Forward (5' to 3') primer corresponding to HPV E6 16, 257 (1074EF) CCAAAAG generates an EcoR1 site. Used for cloning into MIE. 2561 ATGGGATCCTATCTCCATG Reverse (3' to 5') primer corresponding to HPV E6 16, 258 (1075ER) CATGATTAC generates a BamH1 site. Used for cloning into MIE. 2562 CTGGGATCCTCATCAACGT Reverse (3' to 5') primer corresponding to HPV E6 16 ΔPL, 259 (1076ERPL) GTTCTTGATGATC generates a BamH1 site. Used for cloning into MIE. 2603 AAGAAAGCTTTTTATGCAC Forward (5' to 3') primer corresponding to HPV E6 16, 260 (1080EF) CAAAAGAG generates A Hind III site. Used for cloning into pcDNA-HA. 2604 AATCAAGCTTTATCTCCAT Reverse (3' to 5') primer corresponding to HPV E6 16, 261 (1081ER) GCATGATTAC generates a Hind III site. Used for cloning into pcDNA-HA. 2605 GCTGAAGCTTTCAACGTGT Reverse (3' to 5') primer corresponding to HPV E6 16 ΔPL, 262 (1082ERPL) TCTTGATGATC generates a Hind III site. Used for cloning into pcDNA-HA. 2606 AAGCGTCGACTTTATGCAC Forward (5' to 3') primer corresponding to HPV E6 16, 263 (1083EF) CAAAAGAG generates a Sal I site. Used for cloning into pmKit. 2607 AATGCTCGAGTATCTCCAT Reverse (3' to 5') primer corresponding to HPV E6 16, 264 (1084ER) GCATGATTAC generates a Xho I site. Used for cloning into pmKit. 2608 GCTGCTCGAGTCAACGTGT Reverse (3' to 5') primer corresponding to HPV E6 16 ΔPL, 265 (1085ERPL) TCTTGATGATC generates a Xho I site. Used for cloning into pmKit. 2612 AGAAGTCGACCACAATACT Forward (5' to 3') primer corresponding to HPV E6 18, 266 (1086EF) ATGGCGC generates a Sal I site. Used for cloning into pmKit. 2613 TAGGCTCGAGCATACTTAA Reverse (3' to 5') primer corresponding to HPV E6 18, 267 (1087ER) TATTATAC generates a Xho I site. Used for cloning into pmKit. 2614 CTTGCTCGAGTCAGCGTCG Reverse (3' to 5') primer corresponding to HPV E6 18 ΔPL, 268 (1088ERPL) TTGGAGTCG generates a Xho I site. Used for cloning into pmKit. 2615 AGAAAAGCTTCACAATACT Forward (5' to 3') primer corresponding to HPV E6 18, 269 (1089EF) ATGGCGC generates A Hind III site. Used for cloning into pcDNA-HA. 2616 TAGAAGCTTGCATACTTAA Reverse (3' to 5') primer corresponding to HPV E6 18, 270 (1090ER) TATTATAC generates a Hind III site. Used for cloning into pcDNA-HA. 2617 CTTGAAGCTTTCAGCGTCG Reverse (3' to 5') primer corresponding to HPV E6 18 ΔPL, 271 (1091ERPL) TTGAGGTCG generates a Hind III site. Used for cloning into pcDNA-HA.

[0321] 1. Human Papillomavirus (HPV) E6 16 [0322] Acc#:------------- [0323] GI#:4927719 [0324] Construct: HPV E6 16WT-pGEX-3X [0325] Primers: 2542 & 2543 [0326] Vector Cloning Sites(5'/3'): Bam H1/EcoR1 [0327] Insert Cloning Sites(5'/3'): BamH1/EcoR1 [0328] pGEX-3X contains GST to the 5' end (upstream) of the cloning site [0329] Construct: HPV E6 16WT-MIE [0330] Primers: 2560 & 2561 [0331] Vector Cloning Sites(5'/3'): EcoR1/BamH1 [0332] Insert Cloning Sites(5'/3'): EcoR1/BamH1 [0333] MIE contains IRES and EGFP to the 3' end (downstream) of the cloning site [0334] Construct: HPV E6 16ΔPL-MIE [0335] Primers: 2560 & 2562 [0336] Vector Cloning Sites(5'/3'): EcoR1/BamH1 [0337] Insert Cloning Sites(5'/3'): EcoR1/BamH1 [0338] MIE contains IRES and EGFP to the 3' end (downstream) of the cloning site [0339] Construct: HPV E6 16WT-pcDNA3.1-HA [0340] Primers: 2603 & 2604 [0341] Vector Cloning Sites(5'/3'): Hind III/Hind III [0342] Insert Cloning Sites(5'/3'): Hind III/Hind III [0343] pcDNA3.1 (modified) contains HA to the 5' end (upstream) of the cloning site [0344] Construct: HPV E6 16ΔPL-pcDNA3.1-HA [0345] Primers: 2603 & 2605 [0346] Vector Cloning Sites(5'/3'): Hind III/Hind III [0347] Insert Cloning Sites(5'/3'): Hind III/Hind III [0348] pcDNA3.1 (modified) contains HA to the 5' end (upstream) of the cloning site [0349] Construct: HPV E6 16WT-pmKit [0350] Primers: 2606 & 2607 [0351] Vector Cloning Sites(5'/3'): Sal I/Xho I [0352] Insert Cloning Sites(5'/3'): Sal I/Xho I [0353] Construct: HPV E6 16ΔPL-pmKit [0354] Primers: 2606 & 2608 [0355] Vector Cloning Sites(5'/3'): Sal I/Xho I [0356] Insert Cloning Sites(5'/3'): Sal I/Xho I

[0357] 2. Human Papillomavirus (HPV) E6 18 [0358] Acc#:------------- [0359] GI#:-------------- [0360] Construct: HPV E6 18WT-pGEX-3X [0361] Primers: 2548 & 2549 [0362] Vector Cloning Sites(5'/3'): Bam H1/EcoR1 [0363] Insert Cloning Sites(5'/3'): Bgl II/EcoR1 [0364] pGEX-3X contains GST to the 5' end (upstream) of the cloning site [0365] Construct: HPV E6 18WT-MIE [0366] Primers: 2563 & 2564 [0367] Vector Cloning Sites(5'/3'): EcoR1/BamH1 [0368] Insert Cloning Sites(5'/3'): EcoR1/Bgl II [0369] MIE contains IRES and EGFP to the 3' end (downstream) of the cloning site [0370] Construct: HPV E6 18ΔPL-MIE [0371] Primers: 2563 & 2565 [0372] Vector Cloning Sites(5'/3'): EcoR1/BamH1 [0373] Insert Cloning Sites(5'/3'): EcoR1/Bgl II [0374] MIE contains IRES and EGFP to the 3' end (downstream) of the cloning site [0375] Construct: HPV E6 18WT-pcDNA3.1-HA [0376] Primers: 2615 & 2616 [0377] Vector Cloning Sites(5'/3'): Hind III/Hind III [0378] Insert Cloning Sites(5'/3'): Hind III/Hind III [0379] pcDNA3.1 (modified) contains HA to the 5' end (upstream) of the cloning site [0380] Construct: HPV E6 18ΔPL-pcDNA3.1-HA [0381] Primers: 2615 & 2617 [0382] Vector Cloning Sites(5'/3'): Hind III/Hind III [0383] Insert Cloning Sites(5'/3'): Hind III/Hind III [0384] pcDNA3.1 (modified) contains HA to the 5' end (upstream) of the cloning site [0385] Construct: HPV E6 18WT-pmKit [0386] Primers: 2612 & 2613 [0387] Vector Cloning Sites(5'/3'): Sal I/Xho I [0388] Insert Cloning Sites(5'/3'): Sal I/Xho I [0389] Construct: HPV E6 18ΔPL-pmKit [0390] Primers: 2612 & 2614 [0391] Vector Cloning Sites(5'/3'): Sal I/Xho I [0392] Insert Cloning Sites(5'/3'): Sal I/Xho I

[0393] D. GST Fusion Protein Production and Purification

[0394] The constructs using pGEX-3X expression vector were used to make fusion proteins according to the protocol outlined in the GST Fusion System, Second Edition, Revision 2, Pharmacia Biotech. Method II and was optimized for a 1 L LgPP.

[0395] Purified DNA was transformed into E. coli and allowed to grow to an OD₆₀₀ of 0.4-0.8 (600λ). Protein expression was induced for 1-2 hours by addition of IPTG to cell culture. Cells were harvested and lysed. Lysate was collected and GS4B beads (Pharmacia Cat#17-0756-01) were added to bind GST fusion proteins. Beads were isolated and GST fusion proteins were eluted with GEB II. Purified proteins were stored in GEB II at -80° C.

[0396] Purified proteins were used for ELISA-based assays and antibody production.

Example 4

Generation of Eukaryotic Expression Constructs Bearing DNA Fragments that Encode PDZ Domain Containing Genes or Portions of PDZ Domain Genes

[0397] This example describes the cloning of PDZ domain containing genes or portions of PDZ domain containing genes were into eukaryotic expression vectors in fusion with a number of protein tags, including but not limited to Glutathione 5-Transferase (GST), Enhanced Green Fluorescent Protein (EGFP), or Hemagglutinin (HA).

[0398] A. Strategy

[0399] DNA fragments corresponding to PDZ domain containing genes were generated by RT-PCR from RNA from a library of individual cell lines (CLONTECH Cat# K4000-1) derived RNA, using random (oligo-nucleotide) primers (Invitrogen Cat.#48190011). DNA fragments corresponding to PDZ domain containing genes or portions of PDZ domain containing genes were generated by standard PCR, using above purified cDNA fragments and specific primers (see Table 6). Primers used were designed to create restriction nuclease recognition sites at the PCR fragment's ends, to allow cloning of those fragments into appropriate expression vectors. Subsequent to PCR, DNA samples were submitted to agarose gel electrophoresis. Bands corresponding to the expected size were excised. DNA was extracted by Sephaglas Band Prep Kit (Amersham Pharmacia Cat#27-9285-01) and digested with appropriate restriction endonuclease. Digested DNA samples were purified once more by gel electrophoresis, according to the same protocol used above. Purified DNA fragments were coprecipitated and ligated with the appropriate linearized vector. After transformation into E. coli, bacterial colonies were screened by colony PCR and restriction digest for the presence and correct orientation of insert. Positive clones were innoculated in liquid culture for large scale DNA purification. The insert and flanking vector sites from the purified plasmid DNA were sequenced to ensure correct sequence of fragments and junctions between the vectors and fusion proteins.

[0400] B. Vectors:

[0401] All PDZ domain-containing genes were cloned into the vector pGEX-3X (Amersham Pharmacia #27-4803-01, Genemed Acc#U13852, GI#595717), containing a tac promoter, GST, Factor Xa, β-lactamase, and lac repressor.

[0402] The amino acid sequence of the pGEX-3X coding region including GST, Factor Xa, and the multiple cloning site is listed below. Note that linker sequences between the cloned inserts and GST-Factor Xa vary depending on the restriction endonuclease used for cloning Amino acids in the translated region below that may change depending on the insertion used are indicated in small caps, and are included as changed in the construct sequence listed in (C).

TABLE-US-00007 aa 1-aa 232: (SEQ ID NO: 272) MSPILGYWKIKGLVQPTRLLLEYLEEKYEEHLYERDEGDKWRNKKFELGL EFPNLPYYIDGDVKLTQSMAIIRYIADKHNMLGGCPKERAEISMLEGAVL DIRYGVSRIAYSKDFETLKVDFLSKLPEMLKMFEDRLCHKTYLNGDHVTH PDFMLYDALDVVLYMDPMCLDAFPKLVCFKKRIEAIPQIDKYLKSSKYIA WPLQGWQATFGGGDHPPKSDLIEGRgipgnss

[0403] In addition, TAX Interacting Protein 1 (TIP1), in whole or part, was cloned into many other expression vectors, including but not limited to CD5γ, PEAK10 (both provided by the laboratory of Dr. Brian Seed at Harvard University and generated by recombinant DNA technology, containing an IgG region), and MIN (a derivative of MSCV, containing IRES and NGFR, generated by recombinant DNA technology).

[0404] C. Constructs:

[0405] Primers used to generate DNA fragments by PCR are listed in Table 6. PCR primer combinations and restriction sites for insert and vector are listed below, along with amino acid translation for insert and restriction sites. Non-native amino acid sequences are shown in lower case.

TABLE-US-00008 TABLE 6 Primers used in cloning of DLG 1 (domain 2 of 3), MAGI 1 (domain 2 of 6), and TIP1 into representative expression vectors. ID# (Primer Seq Name) Primer Sequence Description ID 1928 AATGGGGATCCAGCTC Forward (5' to 3') primer corresponding to DLG 1, domain 2 273 (654DL1 2F) ATTAAAGG of 3. Generates a Bam H1 site upstream (5') of the PDZ boundary. Used for cloning into pGEX-3X. 1929 ATACATACTTGTGGAA Reverse (3' to 5') primer corresponding to DLG 1, domain 2 274 (655DL1 2R) TTCGCCAC of 3. Generates an EcoR1 site downstream (3') of the PDZ boundary. Used for cloning into pGEX-3X. 1453 CACGGATCCCTTCTGA Forward (5' to 3') primer corresponding to MAGI 1, domain 275 (435BAF) GTTGAAAGGC 2 of 6. Generates a BamH1 site upstream (5') of the PDZ boundary. Used for cloning into pGEX-3X. 1454 TATGAATTCCATCTGG Reverse (3' to 5') primer corresponding to MAGI 1, domain 276 (436BAR) ATCAAAAGGCAATG 2 of 6. Generates an EcoR1 site downstream (3') of the PDZ boundary. Used for cloning into pGEX-3X. 399 CAGGGATCCAAAGAG Forward (5' to 3') primer corresponding to TIP1. Generates 277 (86TAF) TTGAAATTCACAAGC a Bam H1 site upstream (5') of the PDZ boundary. Used for cloning into pGEX-3X. 400 ACGGAATTCTGCAGCG Reverse (3' to 5') primer corresponding to TIP1. Generates 278 (87TAR) ACTGCCGCGTC an EcoR1 site downstream (3') of the PDZ boundary. Used for cloning into pGEX-3X. 1319 AGGATCCAGATGTCCT Forward (5' to 3') primer corresponding to TIP1. Generates 279 (TIP G5-1) ACATCCC a Bam H1 site upstream (5') of the start codon. Used for cloning into pGEX-3X. 1320 GGAATTCATGGACTGC Reverse (3' to 5') primer corresponding to TIP1. Generates 280 (TIP G3-1) TGCACGG an EcoR1 site downstream (3') of the stop codon. Used for cloning into pGEX-3X. 2753 AGAGAATTCTCGAGAT Forward (5' to 3') primer corresponding to TIP1. Generates 281 (1109TIF) GTCCTACATCCC an EcoR1 site upstream (5') of the start codon. Used for cloning into MIN. 2762 TGGGAATTCCTAGGAC Reverse (3' to 5') primer corresponding to TIP1. Generates 282 (1117TIR) AGCATGGACTG an EcoR1 site downstream (3') of the stop codon. Used for cloning into MIN. 2584 CTAGGATCCGGGCCA Forward (5' to 3') primer corresponding to TIP1. Generates 283 (1080TIF) GCCGGTCACC a Bam H1 site upstream (5') of the PDZ boundary. Used for cloning into PEAK10 or CD5γ. 2585 GACGGATCCCCCTGCT Reverse (3' to 5') primer corresponding to TIP1. Generates a 284 (1081TIR) GCACGGCCTTCTG Bam H1 site downstream (3') of the PDZ boundary. Used for cloning into PEAK10 or CD5γ. 2586 GACGAATTCCCCTGCT Reverse (3' to 5') primer corresponding to TIP1. Generates 285 (1082TIR) GCACGGCCTTCTG an EcoR1 site downstream (3') of the PDZ boundary. Used for cloning into PEAK10 or CD5γ. 2587 CTAGAATTCGGGCCAG Forward (5' to 3') primer corresponding to TIP1. Generates 286 (1083TIF) CCGGTCACC an Eco R1 site upstream (5') of the PDZ boundary. Used for cloning into PEAK10 or CD5γ.

[0406] 1. DLG 1, PDZ domain 2 of 3: [0407] Acc#:U13897 [0408] GI#:558437 [0409] Construct: DLG 1, PDZ domain 2 of 3-pGEX-3X [0410] Primers: 1928 & 1929 [0411] Vector Cloning Sites(5'/3'): Bam H1/EcoR1 [0412] Insert Cloning Sites(5'/3'): BamH1/EcoR1

TABLE-US-00009 [0412] aa 1-aa 88 (SEQ ID NO: 287) giqLIKGPKGEGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIG DKLLAVNNVCLEEVTHEEAVTALKNTSDFVYLKVAnss

[0413] 2. MAGI 1, PDZ domain 2 of 6: [0414] Acc#:AB010894 [0415] GI#:3370997 [0416] Construct: MAGI 1, PDZ domain 2 of 6-pGEX-3X [0417] Primers: 1453 & 1454 [0418] Vector Cloning Sites(5'/3'): Bam H1/EcoR1 [0419] Insert Cloning Sites(5'/3'): BamH1/EcoR1

TABLE-US-00010 [0419] aa 1-aa 108 (SEQ ID NO: 288) giPSELKGKFIHTKLRKSSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALD GKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCRGYPLPF DPDgihrd

[0420] 3. TAX Interacting Protein 1 (TIP1): [0421] Acc#:AF028823.2 [0422] GI#:11908159 [0423] Construct: TIP1, PDZ domain 1 of 1-pGEX-3X [0424] Primers: 399& 400 [0425] Vector Cloning Sites(5'/3'): Bam H1/EcoR1 [0426] Insert Cloning Sites(5'/3'): BamH1/EcoR1

TABLE-US-00011 [0426] aa 1-aa 107 (SEQ ID NO: 289) giQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVS EGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTR QSLQnss

[0427] Construct: TIP1-pGEX-3X [0428] Primers: 1319& 1320 [0429] Vector Cloning Sites(5'/3'): Bam H1/EcoR1 [0430] Insert Cloning Sites(5'/3'): BamH1/EcoR1

TABLE-US-00012 [0430] aa 1-aa 128 (SEQ ID NO: 290) giqMSYIPGQPVTAVVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFS EDKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRL TKRSEEVVRLLVTRQSLQKAVQQSMnss

[0431] Construct: TIP1-MIN [0432] Primers: 2753& 2762 [0433] Vector Cloning Sites(5'/3'): EcoR1/EcoR1 [0434] Insert Cloning Sites(5'/3'): EcoR1/EcoR1

TABLE-US-00013 [0434] aa 1-aa 129 (SEQ ID NO: 291) agilEMSYIPGQPVTAVVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNP FSEDKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARK RLTKRSEEVVRLLVTRQSLQKAVQQSMLS

[0435] Construct: TIP1-CD5γ [0436] Primers: 2584& 2585 [0437] Vector Cloning Sites(5'/3'): Bam H1/Bam H1 [0438] Insert Cloning Sites(5'/3'): BamH1/Bam H1

TABLE-US-00014 [0438] aa 1-aa 122 (SEQ ID NO: 292) adPGQPVTAVVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTD KGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSE EVVRLLVTRQSLQKAVQQSdpe

[0439] D. GST Fusion Protein Production and Purification

[0440] The constructs using pGEX-3X expression vector were used to make fusion proteins according to the protocol outlined in the GST Fusion System, Second Edition, Revision 2, Pharmacia Biotech. Method II and was optimized for a 1 L LgPP.

[0441] Purified DNA was transformed into E. coli and allowed to grow to an OD₆₀₀ of 0.4-0.8 (600λ). Protein expression was induced for 1-2 hours by addition of IPTG to cell culture. Cells were harvested and lysed. Lysate was collected and GS4B beads (Pharmacia Cat#17-0756-01) were added to bind GST fusion proteins. Beads were isolated and GST fusion proteins were eluted with GEB II. Purified proteins were stored in GEB II at -80° C.

[0442] Purified proteins were used for ELISA-based assays and antibody production.

[0443] E. IgG Fusion Protein Production and Purification

[0444] The constructs using the CD5gamma or Peak10IgG expression vectors were used to make fusion protein. Purified DNA vectors were transfected into 293 EBNA T cells under standard growth conditions (DMEM+10% FCS) using standard calcium phosphate precipitation methods (Sambrook, Fritsch and Maniatis, Cold Spring Harbor Press) at a ratio of ˜1 ug vector DNA for 1 million cells. This vector results in a fusion protein that is secreted into the growth medium. Transiently transfected cells are tested for peak expression, and growth media containing fusion protein is collected at that maxima (usually 1-2 days). Fusion proteins are either purified using Protein A chromatography or frozen directly in the growth media without addition.

Example 5

TIP-1 Specifically Binds to Oncogenic E6 Proteins

[0445] A. Abstract

[0446] An experiment was conducted to demonstrate and confirm that PDZ domains would only recognize the C-termini of full-length oncogenic HPV E6 proteins and not non-oncogenic E6 variants. This validates the method of using peptides representing the PL sequences of E6 proteins by asking if the PDZ binding can be reproduced using full length E6 fusion proteins.

[0447] Briefly, GST-E6 fusion proteins were constructed as described in Example 3 corresponding to the full length protein sequence of E6 from HPV18 (oncogeneic) and HPV11 (non-oncogenic). Using a modified ELISA assay, binding of a TIP-TIP-IgG fusion protein (two copies of the TIP-1 PDZ domain fused to the hIgG constant region, purification of fusion protein partially described in Example 4) to these two E6 variants was assessed.

[0448] A subsequent experiment is also shown to demonstrate that the assay for binding to E6 using GST-Tip or GST-Magi fusion proteins is not significantly affected by incubation at 4° C. or room temperature (RT).

[0449] B. Modified ELISA Method

[0450] Reagents and Materials [0451] Nunc Polysorp 96 well Immuno-plate (Nunc cat#62409-005) [0452] (Maxisorp plates have been shown to have higher background signal) [0453] PBS pH 7.4 (Gibco BRL cat#16777-148) or [0454] AVC phosphate buffered saline, 8 gm NaCl, 0.29 gm KCl, 1.44 gm Na₂HPO4, 0.24 gm KH₂PO4, add H2O to 1 L and pH 7.4; 0.2 micron filter [0455] 2% BSA/PBS (10 g of bovine serum albumin, fraction V (ICN Biomedicals cat#IC15142983) into 500 ml PBS [0456] Goat anti-GST mAb stock @ 5 mg/ml, store at 4° C., (Amersham Pharmacia cat#27-4577-01), dilute 1:1000 in PBS, final concentration 5 ug/ml [0457] Wash Buffer, 0.2% Tween 20 in 50 mM Tris pH 8.0 [0458] TMB ready to use (Dako cat#S1600) [0459] 1M H₂SO₄ [0460] 12 w multichannel pipettor, [0461] 50 ml reagent reservoirs, [0462] 15 ml polypropylene conical tubes [0463] anti E6HPV18 antibody (OEM Sciences) [0464] Anti-hIgG-HRP (Biomeda)

[0465] Protocol

[0466] Coat plate with 5 ug/ml GST-E6 fusion protein, O/N @ 4° C.

[0467] Dump proteins out and tap dry

[0468] Blocking--Add 200 ul per well 2% BSA/PBS, 2 hrs at 4° C.

[0469] Prepare PDZ proteins (50:50 mixture of supernatant from TIP-TIP-IgG transfection and 2% BSA/PBS)

[0470] 3× wash with cold PBS

[0471] Add PDZ protein prepared in step 7 or anti-E6 Ab at 1 ug/ml in 2% BSA/PBS (or anti-GST Ab as control).

[0472] 3× wash with cold PBS

[0473] Add appropriate concentration of enzyme-conjugated detection Ab (anti-hIgG-HRP, anti-goat-HRP, or anti-mouse-HRP) 100 ul per well on ice, 20 minutes at 4° C.

[0474] Turn on plate reader and prepare files

[0475] 5× wash with Tween wash buffer, avoiding bubbles

[0476] Using gloves, add TMB substrate at 100 ul per well [0477] incubate in dark at room temp [0478] check plate periodically (5, 10, & 20 minutes) [0479] take early readings, if necessary, at 650 nm (blue) [0480] at 30 minutes, stop reaction with 100 ul of 1M H₂SO₄ [0481] take final reading at 450 nm (yellow)

[0482] C. Results of Binding Experiments

[0483] TIP-1, a representative PDZ domain that binds most oncogenic E6 PLs (EXAMPLE 2), is able to specifically recognize PLs from full length oncogenic E6 variants (HPV18-E6) without binding to non-oncogenic variants (HPV11-E6; FIG. 1). Furthermore, even unpurified TIP-TIP-IgG fusion protein is able to recognize GST-HPV18E6 fusion protein at levels comparable to an antibody generated against HPV18-E6. Antibodies against GST were used to confirm that the GST-HPV18E6 and GST-HPV11E6 were uniformly plated (data not shown).

[0484] Furthermore, this assay is robust and the off rates are stable enough that the incubation steps of this assay can be performed at 4° C. or RT. Little difference in signal is seen between the two temperatures for either GST-Magi1 of GST-TIP1 binding to E6 (FIG. 2).

[0485] E6 activity may be further determined by its ability to bind DNA, or to allow degradation of p53 in the presence of a lysate, Zn2+ binding, etc.

Example 6

EC50 Determinations for PDZ Domain Interactions with HPV16 E6

[0486] Using the G-assay described above, several GST-PDZ domain fusion proteins were tested to determine their relative binding strength to the PL of the HPV16 E6 protein. Peptide corresponding to the PL of HPV16 E6 was titrated against a constant amount of GST-PDZ domain fusion and the results are shown below. These results demonstrate that although a number of PDZ domains can bind the E6 protein from HPV16, the first functional domain of MAGI1 (domain 2 in this specification) binds the most tightly, making it the most suitable for diagnostic purposes. This is unexpected, especially in conjunction with MAGI1 being the only PDZ domain containing protein demonstrated to bind to all classes of oncogenic E6 proteins identified. Together, these suggest that MAGI1 is a useful capture/detection agent for oncogenic HPV infections.

TABLE-US-00015 TABLE 7 EC50 values for HPV16 E6 protein with various PDZ domains RNA expression PDZ gene EC50^a [uM] (Cervical cell lines) Magi1C (PDZ2) 0.056 ++ Magi3 (PDZ1) 0.31 neg. SAST1 KIAA 0.58 neg. TIP1 0.75 +++ VARTUL 0.94 + DLG1 (PDZ2) ND ++++ PSD95 (PDZ1-3) 1.0 ND SAST2 1.2 ND DLG2 (PDZ3) 1.6 ND DLG3 (PDZ1-2) 3.8 ND PSD95 (PDZ2) 6.8 ND SIP1 (PDZ1) 7.5 ND Table 7 legend: ND = not done.

Example 7

Production of Antibodies Against Purified E6 Fusion Proteins from HPV18

[0487] In order to achieve the added benefits of a sandwich ELISA-based diagnostic for oncogenic HPV infection, high-affinity antibodies specific to E6 proteins should be generated. Ideally, monoclonal antibodies could be generated from these animals to have a continually renewable resource for the diagnostic.

[0488] Balb/c mice were injected with 25 ug of bacterially purified GST-HPV18E6 protein at 5 day intervals (Josman Labs). Sera from these mice were collected 3 days after each injection of antigen and tested for reactivity with GST-HPV 18E6 (the immunogen) or GST alone following anti GST-depletion (Pharmacia protocol). The results using sera collected at day 28 are shown in FIG. 3. The sera from this mouse reacts with bacterially purified GST-HPV18-E6 protein but do not react with GST alone. This animal is a good candidate from which to generate a monoclonal antibody by standard methods.

Example 8

Pathogen PL Proteins

[0489] Many other proteins from pathogens can be detected using proteins or compounds directed at detection of a PDZ:PL interaction. Table 8 contains some exemplary proteins that could be detected using technology disclosed herein, but is not meant to be limiting in any manner.

TABLE-US-00016 TABLE 8 Example Pathogens amenable to PDZ:PL diagnostics Pathogen Protein Gi or ACC number PL/PDZ Adenovirus E4 19263371 PL Hepatitis B virus Protein X 1175046 PL Human T Cell TAX 6983836 PL Leukemia Virus Herpesvirus DNA polymerase 18307584 PL Herpesvirus US2 9629443 PL

Example 9

Quantification of Endogenous E6 Protein in Cells Infected with HPV16

[0490] A. Abstract:

[0491] Experiments were designed and performed to determine quantities of endogenous E6 protein in HPV16 infected cervical cancer cell lines. Results demonstrate that HPV16 infected cervical cancer cell lines contain in the order of 10,000 to 100,000 molecules E6. From this finding is concluded, that E6 protein can be used as a diagnostic or prognostic marker for cellular HPV infection. Use of protein degradation pathway inhibitors may facilitate such an assay.

[0492] B. Methods:

[0493] Immunoprecipitation of E6 Protein:

[0494] HPV16-infected cervical cancer cell lines SiHa and CasKi are washed with cold PBS and resuspended in HEPES lysis buffer (50 mM HEPES pH 7.4, 150 mM NaCl, 10% glycerol, 0.5% triton X-100, 1 mg/ml BSA, one pellet protease inhibitor cocktail (Roche), and 1 mM PMSF) at 2×10⁷ cells/ml. Lysis proceeds on ice for 30 min and lysates are cleared by centrifugation at 14,000×g for 5 minutes at 4° C. E6 proteins are immunoprecipitated with a mouse anti-E6 antibody (clone 6F4) and protein G beads (Pharmacia, Piscataway, N.J.). After 2 hours incubation at 4° C. with rotation, beads are washed 3 times with washing Buffer [50 mM HEPES pH 7.4, 150 mM NaCl, 10% glycerol, 0.1% Triton X-100, protease inhibitor cocktail (CALBIOCHEM), 1 mM PMSF]. Pellets are resuspended in SDS-PAGE sample buffer and analyzed by immuno blotting using 6F4 anti-E6 antibody and anti-mouse-IgG-HRP conjugated (Jackson Immuno Research).

[0495] Detection of E6 Protein from Cervical Cancer Cell Lysates by Western Technology:

[0496] SiHa and CasKi cervical cancer cell lines were lysed at 2×10⁷ cells/ml in lysis buffer 30 min on ice. Lysates corresponding to approx. 10⁶ cells are immediately resolved on a 12% SDS-PAGE gel followed by transfer to a PVDF membrane. E6 proteins were detected with 6F4 anti-E6 HPV16 antibody and anti-mouse-IgG-HRP conjugated (Jackson Immuno Research).

[0497] C. Results:

[0498] To determine the apparent molecular weight of endogenous E6 protein as present in cervical cancer cells upon infection with HPV16 and to ensure that a anti E6 monoclonal antibody-specific band seen in PAGE represents viral E6 protein, 293 EBNA-T cells were transfected with a construct expressing untagged E6 protein of HPV type 16. Cell lysates were prepared of those cells, and HPV infected SiHa cervical cancer cells. E6 protein from both lysates (transfected and HPV infected) was immunoprecipitated by use of an anti E6-specific monoclonal antibody. Both lysates were analyzed side by side using PAGE technology (FIG. 6). The E6-specific band obtained for transfected E6 migrates in PAGE at the same level as the anti E6 antibody specific band from SiHa cervical cancer cell lines, thus most strongly suggesting that the product immunoprecipitated with anti E6-specfic monoclonal antibody represent viral E6 protein. Using the specific E6 monoclonal antibody, a band of the same size was detected in HPV16 infected cervical cancer cell type CasKi (FIG. 7).

[0499] In a different experimental procedure, endogenous viral E6 protein of HPV16 infected cervical cancer cell line SiHa and CasKi was directly detected from their cell lysates (FIG. 7). Bands that were dependent on E6-specific monoclonal antibody ran in the same way as the band for cells transfected with E6 encoding vector.

[0500] To test, whether E6 in vivo stability can be enhanced by selectively blocking proteasome involved in protein degradation, cell lysates of some samples were treated with proteasome inhibitor MG132. In those samples, the E6 specific band is about 2-3 times more intense. This demonstrates, that addition of an appropriate mixture of protein degradation pathway inhibiting agents can be used to increase the signal specific to E6 protein by augmenting its accumulation temporarily in cells.

[0501] Quantities of E6 protein in lysates were measured by comparing E6-Specific signal in PAGE with signals obtained by MBP-E6 (HPV16) fusion protein loaded onto the same gel. In some cases, MBP-E6 fusion protein was digested with factor X to release the E6 portion only. Signal intensity comparison studies demonstrated, that cervical cancer derived cell lines injected with HPV16 (SiHa, CasKi) contain E6 at a concentration of 0.3 to 3 ng per 1×10⁶ cells. It is concluded, that quantities and stability of E6 are such that detection by an E6-specific (ELISA-) assay will be feasible.

Example 10

Oncogenic E6-PL-Detector Molecules Bind Selectively Endogenous HPV6-E6 Proteins Present in Cell Lysates and can be Used to Separate Endogenous E6 Protein from Other Components Present in a Cell Lysate

[0502] A. Abstract

[0503] Experiments were undertaken to test, whether oncogenic E6-PL-detector will selectively bind endogenous E6 of cells transfected with E6 encoding vector. Moreover, it was tested whether the oncogenic E6-PL-detector can be used to separate E6 from other molecules in the cell lysate subsequent to binding. Findings demonstrate that oncogenic E6-PL-detector, is selective and can be applied to separate E6 protein from the complex mixture of cell lysate molecules.

[0504] B. Methods

Pull Down of E6 Protein with Recombinant PDZ Proteins:

[0505] GST-PDZ fusion proteins (i.e. Magi1 PDZ domain #1, Syn2 bp, Magi3 PDZ domain #1, Tip1, PSD-95 PDZ domain #2, and SAST1 were tested in pull down experiments. Briefly, 10 ug recombinant GST-PDZ proteins were incubated with 30 ul of glutathione-sepharose beads in 1 ml of buffer [50 mM HEPES pH 7.4, 150 mM NaCl, 10% glycerol, 0.1% Triton X-100, protease inhibitor cocktail, 1 mM PMSF] for 1 h at 4° C. with rotation. Subsequently, cell lysates of 10⁷ 293 cells transiently transfected with either pMKit-HA-HPV16-E6 or pMKit-HA vector alone were incubated with the beads bound to PDZ proteins for 3 h at 4° C. with rotation. Beads were washed and analyzed in 12% SDS-PAGE gel electrophoresis followed by Western blotting. Membranes were probed with biotin conjugated anti-HA antibodies (clones 3F10, or 12CA5, Boehringer Mannheim) and HRP-Streptavidin (Zymed).

[0506] Alternatively, cell lysates from 293 cells transiently transfected with pmKit-HA, pmkit-HPV16-HA-E6 or pmKit-HA-HPV16 E6-quadraturePL, were incubated with recombinant GST-Magi1-PDZ domain1 protein and immobilized on glutathione-sepharose beads and bound fractions were immunoblotted with anti HA antibodies. In parallel, lysates were immunoprecipitated and detected with anti-HA antibodies.

[0507] C. Results

[0508] G-assay PDZ-E6-PL binding studies and the determination of experimental binding affinities of the E6-PDZ interactions suggested candidate PDZ domains to be tested for the engineering of an oncogenic E6-PL-detector. In a "pull down" experiment, five different PDZ domains (Tip1; Magi1 domain 1; Sast2; Psd95 domain 2; Synaptojanin-2 binding protein) were tested for pull down of endogenous over expressed E6 from cell lysate. Lysates of cells transfected with HA-tagged E6 HPV-16 were incubated with GST-PDZ fusion protein representing the above PDZ domains bound to Sepharose beads (FIG. 5). Control cell samples were transfected with HA expressing constructs. Detection with anti HA monoclonal antibody demonstrates, that E6 is selectively pulled out of cell lysates via the PDZ domain represented by the oncogenic E6-PL-detector of all five GST-PDZ proteins tested (Tip1; Magi1 domain 1; Sast2; Psd95 domain 2; Synaptojanin-2 binding protein). Results shown in FIG. 5B demonstrate that Magi1-PDZ domain 1 associates with HA-E6 but not with HA-E6ΔPL (lacking the 3 C-terminal amino acids). This method can be used to determine, whether a particular PDZ domain has the capacity of specific E6 binding. The conclusion is made, that competition by potentially PDZ binding proteins represented by the complex mixture of cell lysates and E6 for binding to PDZs can be shifted towards selective binding of E6 by appropriate choice of the specific PDZ domain that constitutes the oncogenic E6-PL detector.

Example 11

Endogenous E6 Protein of HPV Infected Cervical Cancer Cell Lines can be Detected in a Sandwich ELISA Via the Oncogenic E6-PL Detector Molecule

[0509] A. Abstract:

[0510] Experiments are described, in which the oncogenic E6-PL detector is used to selectively detect presence of E6 protein in HPV infected cells via a sandwich ELISA. The specific capturing of oncogenic E6 but not non-oncogenic E6 demonstrates that the PDZ based oncogenic E6-PL detector can be applied for a E6 detection based diagnostic test for HPV infection and/or cervical cancer test.

[0511] B. Methods:

[0512] Sandwich type 1 ELISA: Anti-E6 antibody is coated onto a 96-well Polysorp or Maxysorp ELISA plate at 5 ug/ml in PBS (100 ul/well) overnight at 4° C. Plates were washed with PBS and blocked with 200 ul PBS/2% BSA for 2 hours at 4° C. Cell lysates diluted in PBS/2% BSA are added and incubated at room temperature for 1 hour. After 3 washes with PBS, 100 ul of oncogenic E6 detector (for example MAGI1-MAGI1-IgG or GST-MAGI1-PDZ1) at 5 ug/ml was added in PBS/2% BSA, and plates are incubated at room temperature for 45 min Plates are then washed 3 times with PBS and incubated with anti-hIgG-HRP (Jackson Immuno Research) or anti-GST-HRP (Pharmacia) at the appropriate concentration in PBS/2% BSA at room temperature for 45 minutes. After 5 washes with 50 mM Tris/0.2% Tween-20, plates were incubated with 100 ul/well TMB substrate (Dako Industries). The colorimetric reaction is stopped at appropriate times (usually after 20 minutes) by addition of 100 ul of 0.1 M H₂SO₄ and plates read at A₄₅₀ nm in an ELISA plate reader.

[0513] In a variant of sandwich 1 ELISA, cell lysates were preincubated with oncogenic E6 detector at 2.5-5 ug/ml final concentration, for 1-2 hours at 4° C., prior to adding to the anti-E6 antibody coated plate.

[0514] Sandwich type 2 ELISA: In sandwich 2, reagents and procedures mostly correspond to those used in sandwich 1. In contrast to sandwich 1, 100 ul of oncogenic E6 detector is coated onto the ELISA plate and the anti-E6 antibody is used for detection of oncogenic detector-bound E6, followed by anti-mouse IgG-HRP (Jackson Immuno Research). In a modified version of sandwich 2, biotinylated reagents (anti-E6 antibody or oncogenic detector) will be used followed by streptavidin-HRP to further diminish background and to increase sensitivity.

[0515] C. Results:

[0516] A sandwich ELISA was conceived in two different variations. In Type 1 sandwich ELISA, E6 protein present in cell lysates in captured by E6-specific monoclonal antibody, and detection of specifically oncogenic variants occurs via the oncogenic E6-PL detector. In the type 2 ELISA set up, oncogenic E6 protein is captured via the oncogenic E6-PL detector to the solid phase and E6 detection occurs via a specific E6 antibody or another E6 binding specific agent like nucleic acid based binding compounds, chemicals binding E6, E6 binding proteins or a combination of those compounds. Cells were lysed directly on a tissue culture plate and lysates were precleared by centrifugation from insoluble components. Lysates were preincubated at 4° C. with oncogenic E6-PL detector, a fusion protein of GST and Magi1 PDZ domain #1. Subsequently, lysates were loaded onto E6-specific antibody coated ELISA plates. Detection occurred via addition of HRP conjugated GST-specific antibody and addition of the HRP substrate TMB after appropriate washes between different incubation steps. Detection signal is constituted by a colorimetric change that is quantified using absorbance measurements at 450 nm. Results obtained from a type 1 ELISA assay are shown. HPV16-E6 of over expressing E6 transfected 293 EBNA-T cells and of HPV16 infected cervical cancer derived cell lines was detected. For HPV infected cells, the detection limit is at approximately 250,000 cells (FIG. 8). It is predicted, that background reduction, detection signal enhancement and E6:PDZ binding enhancement will increase sensitivity to 25,000 cells or less. Background reduction can be achieved by optimizing choice and concentrations of all components in the system, as well as by additional component purification or addition of size exclusion or filtering procedures. Detection signal can be enhanced by use of more sensitive detection systems, for example luminescence based technologies. E6:PDZ binding can be enhanced by modifying the PDZ base of the oncogenic E6-PL detector, and by treating the E6 containing lysates with phosphatases, thus freeing all E6-PL sites from any phosphate that might interfere with, diminish or abrogate E6-Pl-specific binding to the oncogenic E6-PL detector.

Example 12

Endogenous E6 Protein of HPV Infected Cervical Cancer Cell Lines can be Detected Via a Membrane Bound Oncogenic E6-PL Detector. Membrane Based Detection can be Used to Enhance Sensitivity of Oncogenic E6-PL Detector Based Assay

[0517] A. Abstract:

[0518] Experiments were conducted to demonstrate that the cervical cancer ELISA test types 1 and 2 can be performed using a membrane based format. In the membrane-based form of the cervical cancer diagnostic kit, the principles of the traditional ELISA based sandwich 1 and 2 are maintained, especially with regard to the capturing or detection of exclusively the oncogenic forms of E6. Sensitivity is found to be largely increased in the membrane based assay versus the traditional ELISA.

[0519] B. Methods:

[0520] Preblock 12 well corning plates (tissue culture treated with lid, polystyrene, 22 mm well diameter) with 2 ml PBS/2% BSA and then rinse 3× with 2 ml PBS

[0521] Spot nitrocellulose membrane with 2 ul GST-Magi1 d 1 solution (88.6, 0.17 mg/ml) using 2 ul pipetman (duplicate spots in 1×1.5 cm membrane, transblot, transfer medium, supported nitrocellulose membrane, catalog no. 162-0097 (0.2 uM), Lot No. 8934). Allow to air dry for ˜5-10 minutes.

[0522] Hydrate membrane with 1 ml PBS for a couple of minutes in plate.

[0523] Block membrane in each well with 1 ml PBS/2% BSA for 30 minutes at room temperature while rocking

[0524] Wash 3× with PBS ˜5-10 minutes/wash, 1 ml/wash, aspirate directly first wash. OK to wash at room temperature.

[0525] Incubate membrane with cell lysate, ˜300 ul, 3 million cells total, for 30 minutes at room temperature (rock solutions). Also perform 1:10 dilutions (3 million, 300K, 30K, 3K) in PBS/2% BSA (33.33 ul sample, 300 ul PBS/2% BSA)

[0526] Wash 3× with PBS, 3-5'/wash, all at 4° C., 1 ml/wash.

[0527] Incubate membrane with anti-E6 (6F4) for 30 minutes at 4° C. (1:5000 dilution, or 1:50 of 1:100 6F4 in PBS/2% BSA). (Need 0.4 ml/well, and for 36 wells need 16 ml a) 1) 320 ul of 1:100 6F4, 15.68 ml PBS/2% BSA.

[0528] Wash 3× with PBS, 4° C., ˜5-10 minutes/wash.

[0529] Incubate with HRP-anti-mouse (1:1000) for 30' at 4° C. while rocking (HRP-anti-Mouse Ig Horseradish peroxidase linked whole antibody from Sheep, Amersham, NA931V, lot 213295. Use 400 ul per well. For 36 wells would need a) 16 ul HRP-anti-mouse, 16 ml PBS/2% BSA

[0530] Wash 5× with PBS at 4° C., ˜5-10 minutes rocking/wash, last wash 10 minutes. Then aspirate last wash, and add 1 ml fresh PBS to each well.

[0531] Develop with ECL+ system in Petri dish and expose in Kodak film.

[0532] C. Results:

[0533] In a sandwich type 2 setup, GST-MAGI1 oncogenic E6-PL detector was spotted on a membrane and decreasing quantities of HPV11 and HPV16 MBP-E6 fusion proteins were added for binding. Detection with E6 specific antibodies clearly demonstrated specificity of signal for oncogenic (HPV16), but not non-oncogenic E6 (HPV11). Upon longer exposure (5 minutes), HPV16 MBP-E6 quantities of 0.1 nanogram total were readily detectable (FIG. 9, top).

[0534] In the same experiment, lysates of HPV16-E6 transfected cells and mock transfected cells were applied to a membrane based S2 test. E6-specific signal was obtained only for the E6 expressing cells, not for mock transfected cells (FIG. 9, bottom). These results clearly demonstrate that the membrane based cervical cancer test can be executed in a membrane-based format.

[0535] In a subsequent experiment, lysates of HPV infected cells were tested (FIG. 10). Clearly, only the HPV16-E6 expressing cells are yielding signal (SiHa and CasKi), but not the HPV negative but cervical cancer positive cell line C33. E6-specific signal is obtained at 300.000 cells, indicating that an optimized form of this test may detect HPV-E6 proteins of substantially lower cell numbers.

Example 13

Detection of HPV16 E6 Onco Protein in a Cervical Carcinoma Tumor

[0536] A small piece of tissue was removed from an OCT embedded tumor and split in two parts. One aliquot was used for RT-PCR based HPV typing, the second aliquot was used for protein extraction.

[0537] For typing, RNA was extracted using the TRIZOL kit (invitrogen). Briefly, a small tissue piece was transferred into 1 ml of TRIZOL solution and a cells were suspended and lysed using a Dounce homogenizer. RNA was extracted and precipitated with 2-Propanol and quantified by the extinction of 260 nm light. 1 microgram of RNA was used for cDNA generation. Primers were random hexamers, Superscript II (Invitrogen) was used for reverse transcription. Primers specific to the E6 gene of HPV16, HPV18 and HPV45 were used for PCR on the cDNA template, and a band of expected size was obtained for primers specific to HPV16 E6 but not with primers specfic to HPV18 or 45. Thus, the examined tumor consists of HPV16 infected cells.

[0538] For protein extraction, a tissue piece was directly lysed in 1 ml lysis buffer (50 mM Hepes pH7.5/150 mM NaCl/1 mM EDTA/10% Glycerol/1% Triton/10 mM Sodiumflouride/1 mM Sodium-Orthovanadat/1 mM PMSF/Calbiochem protease inhibitor 1:100) and membranes were broken using a 3-ml Dounce homogenizer. Total protein concentrations were determined by Bradford protein concentration assay and amounts corresponding to ˜1,000,000 cells were separated on 12% PAGE gels. Lysate from a non-HPV16 infected tumor was loaded as a negative control.

[0539] Gels were analyzed by Western technology using an anti HPV16-E6 specific monoclonal antibody. A band of the correct size for HPV16-E6 protein was revealed for the lysate derived from HPV16 infected tumor, but not for lysates derived from the HPV16 negative control tumors. Band intensity was comparable to the E6-specific band detected with 1,000,000 HPV16-specific SiHa cells. C33-cervical cell line that is HPV E6 negative; MBP-E6--a maltose binding protein--HPV16 E6 fusion protein; HPV E6 overexpression--lysate from HEK 293 cells transformed with a construct that expresses full length HPV16 E6 protein. These results are shown in FIG. 11.

Example 14

Detection of Cervical Cancer from Human Samples Using Rapid Immunoassay Technology and Fluorescence Detection

[0540] A. Abstract:

[0541] Experiments are described, in which the oncogenic E6-PL detector is used to selectively detect the presence of oncogenic E6 proteins in human samples using a Rapid Immunoassay (RIA) for the purpose of cervical cancer diagnosis.

[0542] B. Methods:

[0543] Cervical cells are collected using a standard cervical broom or brush such as the CULTURETTE DIRECT (Becton Dickinson) and resuspended in sample diluent. Cells are collected by centrifugation and pellets are resuspended in 200 ul cold lysis buffer (50 mM Hepes pH7.5/150 mM NaCl/1 mM EDTA/10% Glycerol/1% Triton/10 mM Sodium fluoride/1 mM Sodium-Orthovanadate/1 mM PMSF/Calbiochem protease inhibitor 1:100), cooled to 5° C., and lightly vortexed to facilitate lysis. Samples can be transported at this point. 75 ul of lysate is diluted in PBS/2% BSA and 150 ul (or ˜half the well volume) is then added to plates appropriate for a fluorescence reader that have been coated with recombinant MAGI1 domain 2 (referenced as MAGI1 domain 2 herein but redesignated domain 1 in most of the public literature) fusion protein at 5 ug/ml in PBS and had the nonspecific sites blocked with albumin or gelatin. Diluted cell lysates are incubated at room temperature for 30 minutes. After 3 washes with PBS, 100 ul of FITC labeled anti-oncogenic E6 antibody mixture (that together recognizes E6 proteins from all common HPV types) at 0.5 ug/ml are added in PBS/2% BSA, and plates are incubated at room temperature for 25 min Plates are then washed 3 times with PBS and fluorescence is measured.

[0544] C. Results:

[0545] Cancer stage diagnosis is determined through comparing fluorescence intensity values to standards and controls.

Example 15

Detecting Cervical Cancer from Human Samples Using Rapid Immunoassay Technology in a Laminar Flow Strip Assay with Colorimetric Detection

[0546] A. Abstract:

[0547] Experiments are described, in which the oncogenic E6-PL detector is used to selectively detect the presence of oncogenic E6 proteins in human samples using a Rapid Immunoassay (RIA) in a dipstick format (or laminar flow format) for the purpose of cervical cancer diagnosis. This assay is similar to most one-step at home hCG pregnancy tests.

[0548] B. Methods:

[0549] Cervical cells are collected using a standard cervical broom or brush such as the CULTURETTE DIRECT (Becton Dickinson) and resuspended in sample diluent. Cells are collected by centrifugation and pellets are resuspended in 200 ul cold lysis buffer (50 mM Hepes pH7.5/150 mM NaCl/1 mM EDTA/10% Glycerol/1% Triton/10 mM Sodium fluoride/1 mM Sodium-Orthovanadate/1 mM PMSF/Calbiochem protease inhibitor 1:100), cooled to 5° C., and lightly vortexed to facilitate lysis. Samples can be transported at this point. Lysate is diluted in PBS/2% BSA to 500 ul and applied to the test device. The test device contains a mixture of anti-E6 monoclonal antibodies with colored conjugate and recombinant MAGI1PDZ2 fusion protein coated on a membrane test area. By capillary action, the lysed cell sample migrates over the test area and reacts with the impregnated reagents to form visible colored bands in the test window. The presence of oncogenic E6 protein in the sample will result in the formation of a distinct colored band in the test area thus indicating a positive result for oncogenic E6 protein. Conversely, if no line appears in the test area, the test is negative.

[0550] C. Results:

[0551] Cancer diagnosis is determined though a comparison between the color of the test line in the test area and positive and negative controls to verify proper test function.

[0552] The present invention is not to be limited in scope by the exemplified embodiments which are intended as illustrations of single aspects of the invention and any sequences which are functionally equivalent are within the scope of the invention. Indeed, various modifications of the invention in addition to those shown and described herein will become apparent to those skilled in the art from the foregoing description and accompanying drawings. Such modifications are intended to fall within the scope of the appended claims.

[0553] All publications cited herein and priority documents cited in the Applicant Data Sheet are incorporated by reference in their entirety and for all purposes.

Sequence CWU 1

331187PRTHomo sapiens 1Arg Asp Met Ala Glu Ala His Lys Glu Ala Met Ser Arg Lys Leu Gly1 5 10 15Gln Ser Glu Ser Gln Gly Pro Pro Arg Ala Phe Ala Lys Val Asn Ser 20 25 30Ile Ser Pro Gly Ser Pro Ser Ile Ala Gly Leu Gln Val Asp Asp Glu 35 40 45Ile Val Glu Phe Gly Ser Val Asn Thr Gln Asn Phe Gln Ser Leu His 50 55 60Asn Ile Gly Ser Val Val Gln His Ser Glu Gly Ala Leu Ala Pro Thr65 70 75 80Ile Leu Leu Ser Val Ser Met 85293PRTHomo sapiens 2Leu Arg Lys Glu Pro Glu Ile Ile Thr Val Thr Leu Lys Lys Gln Asn1 5 10 15Gly Met Gly Leu Ser Ile Val Ala Ala Lys Gly Ala Gly Gln Asp Lys 20 25 30Leu Gly Ile Tyr Val Lys Ser Val Val Lys Gly Gly Ala Ala Asp Val 35 40 45Asp Gly Arg Leu Ala Ala Gly Asp Gln Leu Leu Ser Val Asp Gly Arg 50 55 60Ser Leu Val Gly Leu Ser Gln Glu Arg Ala Ala Glu Leu Met Thr Arg65 70 75 80Thr Ser Ser Val Val Thr Leu Glu Val Ala Lys Gln Gly 85 903105PRTHomo sapiens 3Leu Ile Arg Pro Ser Val Ile Ser Ile Ile Gly Leu Tyr Lys Glu Lys1 5 10 15Gly Lys Gly Leu Gly Phe Ser Ile Ala Gly Gly Arg Asp Cys Ile Arg 20 25 30Gly Gln Met Gly Ile Phe Val Lys Thr Ile Phe Pro Asn Gly Ser Ala 35 40 45Ala Glu Asp Gly Arg Leu Lys Glu Gly Asp Glu Ile Leu Asp Val Asn 50 55 60Gly Ile Pro Ile Lys Gly Leu Thr Phe Gln Glu Ala Ile His Thr Phe65 70 75 80Lys Gln Ile Arg Ser Gly Leu Phe Val Leu Thr Val Arg Thr Lys Leu 85 90 95Val Ser Pro Ser Leu Thr Asn Ser Ser 100 1054132PRTHomo sapiens 4Gly Ile Ser Ser Leu Gly Arg Lys Thr Pro Gly Pro Lys Asp Arg Ile1 5 10 15Val Met Glu Val Thr Leu Asn Lys Glu Pro Arg Val Gly Leu Gly Ile 20 25 30Gly Ala Cys Cys Leu Ala Leu Glu Asn Ser Pro Pro Gly Ile Tyr Ile 35 40 45His Ser Leu Ala Pro Gly Ser Val Ala Lys Met Glu Ser Asn Leu Ser 50 55 60Arg Gly Asp Gln Ile Leu Glu Val Asn Ser Val Asn Val Arg His Ala65 70 75 80Ala Leu Ser Lys Val His Ala Ile Leu Ser Lys Cys Pro Pro Gly Pro 85 90 95Val Arg Leu Val Ile Gly Arg His Pro Asn Pro Lys Val Ser Glu Gln 100 105 110Glu Met Asp Glu Val Ile Ala Arg Ser Thr Tyr Gln Glu Ser Lys Glu 115 120 125Ala Asn Ser Ser 1305105PRTHomo sapiens 5Gln Ser Glu Asn Glu Glu Asp Val Cys Phe Ile Val Leu Asn Arg Lys1 5 10 15Glu Gly Ser Gly Leu Gly Phe Ser Val Ala Gly Gly Thr Asp Val Glu 20 25 30Pro Lys Ser Ile Thr Val His Arg Val Phe Ser Gln Gly Ala Ala Ser 35 40 45Gln Glu Gly Thr Met Asn Arg Gly Asp Phe Leu Leu Ser Val Asn Gly 50 55 60Ala Ser Leu Ala Gly Leu Ala His Gly Asn Val Leu Lys Val Leu His65 70 75 80Gln Ala Gln Leu His Lys Asp Ala Leu Val Val Ile Lys Lys Gly Met 85 90 95Asp Gln Pro Arg Pro Ser Asn Ser Ser 100 1056101PRTHomo sapiens 6Leu Gly Arg Ser Val Ala Val His Asp Ala Leu Cys Val Glu Val Leu1 5 10 15Lys Thr Ser Ala Gly Leu Gly Leu Ser Leu Asp Gly Gly Lys Ser Ser 20 25 30Val Thr Gly Asp Gly Pro Leu Val Ile Lys Arg Val Tyr Lys Gly Gly 35 40 45Ala Ala Glu Gln Ala Gly Ile Ile Glu Ala Gly Asp Glu Ile Leu Ala 50 55 60Ile Asn Gly Lys Pro Leu Val Gly Leu Met His Phe Asp Ala Trp Asn65 70 75 80Ile Met Lys Ser Val Pro Glu Gly Pro Val Gln Leu Leu Ile Arg Lys 85 90 95His Arg Asn Ser Ser 100774PRTHomo sapiens 7Gln Thr Val Ile Leu Pro Gly Pro Ala Ala Trp Gly Phe Arg Leu Ser1 5 10 15Gly Gly Ile Asp Phe Asn Gln Pro Leu Val Ile Thr Arg Ile Thr Pro 20 25 30Gly Ser Lys Ala Ala Ala Ala Asn Leu Cys Pro Gly Asp Val Ile Leu 35 40 45Ala Ile Asp Gly Phe Gly Thr Glu Ser Met Thr His Ala Asp Gly Gln 50 55 60Asp Arg Ile Lys Ala Ala Glu Phe Ile Val65 70885PRTHomo sapiens 8Ile Leu Val Glu Val Gln Leu Ser Gly Gly Ala Pro Trp Gly Phe Thr1 5 10 15Leu Lys Gly Gly Arg Glu His Gly Glu Pro Leu Val Ile Thr Lys Ile 20 25 30Glu Glu Gly Ser Lys Ala Ala Ala Val Asp Lys Leu Leu Ala Gly Asp 35 40 45Glu Ile Val Gly Ile Asn Asp Ile Gly Leu Ser Gly Phe Arg Gln Glu 50 55 60Ala Ile Cys Leu Val Lys Gly Ser His Lys Thr Leu Lys Leu Val Val65 70 75 80Lys Arg Asn Ser Ser 859104PRTHomo sapiens 9Arg Glu Lys Pro Leu Phe Thr Arg Asp Ala Ser Gln Leu Lys Gly Thr1 5 10 15Phe Leu Ser Thr Thr Leu Lys Lys Ser Asn Met Gly Phe Gly Phe Thr 20 25 30Ile Ile Gly Gly Asp Glu Pro Asp Glu Phe Leu Gln Val Lys Ser Val 35 40 45Ile Pro Asp Gly Pro Ala Ala Gln Asp Gly Lys Met Glu Thr Gly Asp 50 55 60Val Ile Val Tyr Ile Asn Glu Val Cys Val Leu Gly His Thr His Ala65 70 75 80Asp Val Val Lys Leu Phe Gln Ser Val Pro Ile Gly Gln Ser Val Asn 85 90 95Leu Val Leu Cys Arg Gly Tyr Pro 1001091PRTHomo sapiens 10Leu Ser Gly Ala Thr Gln Ala Glu Leu Met Thr Leu Thr Ile Val Lys1 5 10 15Gly Ala Gln Gly Phe Gly Phe Thr Ile Ala Asp Ser Pro Thr Gly Gln 20 25 30Arg Val Lys Gln Ile Leu Asp Ile Gln Gly Cys Pro Gly Leu Cys Glu 35 40 45Gly Asp Leu Ile Val Glu Ile Asn Gln Gln Asn Val Gln Asn Leu Ser 50 55 60His Thr Glu Val Val Asp Ile Leu Lys Asp Cys Pro Ile Gly Ser Glu65 70 75 80Thr Ser Leu Ile Ile His Arg Gly Gly Phe Phe 85 901193PRTHomo sapiens 11His Tyr Lys Glu Leu Asp Val His Leu Arg Arg Met Glu Ser Gly Phe1 5 10 15Gly Phe Arg Ile Leu Gly Gly Asp Glu Pro Gly Gln Pro Ile Leu Ile 20 25 30Gly Ala Val Ile Ala Met Gly Ser Ala Asp Arg Asp Gly Arg Leu His 35 40 45Pro Gly Asp Glu Leu Val Tyr Val Asp Gly Ile Pro Val Ala Gly Lys 50 55 60Thr His Arg Tyr Val Ile Asp Leu Met His His Ala Ala Arg Asn Gly65 70 75 80Gln Val Asn Leu Thr Val Arg Arg Lys Val Leu Cys Gly 85 9012106PRTHomo sapiens 12Glu Gly Arg Gly Ile Ser Ser His Ser Leu Gln Thr Ser Asp Ala Val1 5 10 15Ile His Arg Lys Glu Asn Glu Gly Phe Gly Phe Val Ile Ile Ser Ser 20 25 30Leu Asn Arg Pro Glu Ser Gly Ser Thr Ile Thr Val Pro His Lys Ile 35 40 45Gly Arg Ile Ile Asp Gly Ser Pro Ala Asp Arg Cys Ala Lys Leu Lys 50 55 60Val Gly Asp Arg Ile Leu Ala Val Asn Gly Gln Ser Ile Ile Asn Met65 70 75 80Pro His Ala Asp Ile Val Lys Leu Ile Lys Asp Ala Gly Leu Ser Val 85 90 95Thr Leu Arg Ile Ile Pro Gln Glu Glu Leu 100 1051398PRTHomo sapiens 13Leu Ser Asp Tyr Arg Gln Pro Gln Asp Phe Asp Tyr Phe Thr Val Asp1 5 10 15Met Glu Lys Gly Ala Lys Gly Phe Gly Phe Ser Ile Arg Gly Gly Arg 20 25 30Glu Tyr Lys Met Asp Leu Tyr Val Leu Arg Leu Ala Glu Asp Gly Pro 35 40 45Ala Ile Arg Asn Gly Arg Met Arg Val Gly Asp Gln Ile Ile Glu Ile 50 55 60Asn Gly Glu Ser Thr Arg Asp Met Thr His Ala Arg Ala Ile Glu Leu65 70 75 80Ile Lys Ser Gly Gly Arg Arg Val Arg Leu Leu Leu Lys Arg Gly Thr 85 90 95Gly Gln1490PRTHomo sapiens 14His Glu Ser Val Ile Gly Arg Asn Pro Glu Gly Gln Leu Gly Phe Glu1 5 10 15Leu Lys Gly Gly Ala Glu Asn Gly Gln Phe Pro Tyr Leu Gly Glu Val 20 25 30Lys Pro Gly Lys Val Ala Tyr Glu Ser Gly Ser Lys Leu Val Ser Glu 35 40 45Glu Leu Leu Leu Glu Val Asn Glu Thr Pro Val Ala Gly Leu Thr Ile 50 55 60Arg Asp Val Leu Ala Val Ile Lys His Cys Lys Asp Pro Leu Arg Leu65 70 75 80Lys Cys Val Lys Gln Gly Gly Ile His Arg 85 9015126PRTHomo sapiens 15Asn Leu Met Phe Arg Lys Phe Ser Leu Glu Arg Pro Phe Arg Pro Ser1 5 10 15Val Thr Ser Val Gly His Val Arg Gly Pro Gly Pro Ser Val Gln His 20 25 30Thr Thr Leu Asn Gly Asp Ser Leu Thr Ser Gln Leu Thr Leu Leu Gly 35 40 45Gly Asn Ala Arg Gly Ser Phe Val His Ser Val Lys Pro Gly Ser Leu 50 55 60Ala Glu Lys Ala Gly Leu Arg Glu Gly His Gln Leu Leu Leu Leu Glu65 70 75 80Gly Cys Ile Arg Gly Glu Arg Gln Ser Val Pro Leu Asp Thr Cys Thr 85 90 95Lys Glu Glu Ala His Trp Thr Ile Gln Arg Cys Ser Gly Pro Val Thr 100 105 110Leu His Tyr Lys Val Asn His Glu Gly Tyr Arg Lys Leu Val 115 120 12516100PRTHomo sapiens 16Ile Leu Ser Gln Val Thr Met Leu Ala Phe Gln Gly Asp Ala Leu Leu1 5 10 15Glu Gln Ile Ser Val Ile Gly Gly Asn Leu Thr Gly Ile Phe Ile His 20 25 30Arg Val Thr Pro Gly Ser Ala Ala Asp Gln Met Ala Leu Arg Pro Gly 35 40 45Thr Gln Ile Val Met Val Asp Tyr Glu Ala Ser Glu Pro Leu Phe Lys 50 55 60Ala Val Leu Glu Asp Thr Thr Leu Glu Glu Ala Val Gly Leu Leu Arg65 70 75 80Arg Val Asp Gly Phe Cys Cys Leu Ser Val Lys Val Asn Thr Asp Gly 85 90 95Tyr Lys Arg Leu 1001790PRTHomo sapiens 17Thr Arg Val Arg Leu Val Gln Phe Gln Lys Asn Thr Asp Glu Pro Met1 5 10 15Gly Ile Thr Leu Lys Met Asn Glu Leu Asn His Cys Ile Val Ala Arg 20 25 30Ile Met His Gly Gly Met Ile His Arg Gln Gly Thr Leu His Val Gly 35 40 45Asp Glu Ile Arg Glu Ile Asn Gly Ile Ser Val Ala Asn Gln Thr Val 50 55 60Glu Gln Leu Gln Lys Met Leu Arg Glu Met Arg Gly Ser Ile Thr Phe65 70 75 80Lys Ile Val Pro Ser Tyr Arg Thr Gln Ser 85 901888PRTHomo sapiens 18Leu Glu Gln Lys Ala Val Leu Glu Gln Val Gln Leu Asp Ser Pro Leu1 5 10 15Gly Leu Glu Ile His Thr Thr Ser Asn Cys Gln His Phe Val Ser Gln 20 25 30Val Asp Thr Gln Val Pro Thr Asp Ser Arg Leu Gln Ile Gln Pro Gly 35 40 45Asp Glu Val Val Gln Ile Asn Glu Gln Val Val Val Gly Trp Pro Arg 50 55 60Lys Asn Met Val Arg Glu Leu Leu Arg Glu Pro Ala Gly Leu Ser Leu65 70 75 80Val Leu Lys Lys Ile Pro Ile Pro 851992PRTHomo sapiens 19Gln Arg Lys Leu Val Thr Val Glu Lys Gln Asp Asn Glu Thr Phe Gly1 5 10 15Phe Glu Ile Gln Ser Tyr Arg Pro Gln Asn Gln Asn Ala Cys Ser Ser 20 25 30Glu Met Phe Thr Leu Ile Cys Lys Ile Gln Glu Asp Ser Pro Ala His 35 40 45Cys Ala Gly Leu Gln Ala Gly Asp Val Leu Ala Asn Ile Asn Gly Val 50 55 60Ser Thr Glu Gly Phe Thr Tyr Lys Gln Val Val Asp Leu Ile Arg Ser65 70 75 80Ser Gly Asn Leu Leu Thr Ile Glu Thr Leu Asn Gly 85 9020109PRTHomo sapiens 20Arg Cys Leu Ile Gln Thr Lys Gly Gln Arg Ser Met Asp Gly Tyr Pro1 5 10 15Glu Gln Phe Cys Val Arg Ile Glu Lys Asn Pro Gly Leu Gly Phe Ser 20 25 30Ile Ser Gly Gly Ile Ser Gly Gln Gly Asn Pro Phe Lys Pro Ser Asp 35 40 45Lys Gly Ile Phe Val Thr Arg Val Gln Pro Asp Gly Pro Ala Ser Asn 50 55 60Leu Leu Gln Pro Gly Asp Lys Ile Leu Gln Ala Asn Gly His Ser Phe65 70 75 80Val His Met Glu His Glu Lys Ala Val Leu Leu Leu Lys Ser Phe Gln 85 90 95Asn Thr Val Asp Leu Val Ile Gln Arg Glu Leu Thr Val 100 10521101PRTHomo sapiens 21Ile Gln Val Asn Gly Thr Asp Ala Asp Tyr Glu Tyr Glu Glu Ile Thr1 5 10 15Leu Glu Arg Gly Asn Ser Gly Leu Gly Phe Ser Ile Ala Gly Gly Thr 20 25 30Asp Asn Pro His Ile Gly Asp Asp Ser Ser Ile Phe Ile Thr Lys Ile 35 40 45Ile Thr Gly Gly Ala Ala Ala Gln Asp Gly Arg Leu Arg Val Asn Asp 50 55 60Cys Ile Leu Gln Val Asn Glu Val Asp Val Arg Asp Val Thr His Ser65 70 75 80Lys Ala Val Glu Ala Leu Lys Glu Ala Gly Ser Ile Val Arg Leu Tyr 85 90 95Val Lys Arg Arg Asn 1002295PRTHomo sapiens 22Ile Gln Leu Ile Lys Gly Pro Lys Gly Leu Gly Phe Ser Ile Ala Gly1 5 10 15Gly Val Gly Asn Gln His Ile Pro Gly Asp Asn Ser Ile Tyr Val Thr 20 25 30Lys Ile Ile Glu Gly Gly Ala Ala His Lys Asp Gly Lys Leu Gln Ile 35 40 45Gly Asp Lys Leu Leu Ala Val Asn Asn Val Cys Leu Glu Glu Val Thr 50 55 60His Glu Glu Ala Val Thr Ala Leu Lys Asn Thr Ser Asp Phe Val Tyr65 70 75 80Leu Lys Val Ala Lys Pro Thr Ser Met Tyr Met Asn Asp Gly Asn 85 90 952385PRTHomo sapiens 23Ile Leu His Arg Gly Ser Thr Gly Leu Gly Phe Asn Ile Val Gly Gly1 5 10 15Glu Asp Gly Glu Gly Ile Phe Ile Ser Phe Ile Leu Ala Gly Gly Pro 20 25 30Ala Asp Leu Ser Gly Glu Leu Arg Lys Gly Asp Arg Ile Ile Ser Val 35 40 45Asn Ser Val Asp Leu Arg Ala Ala Ser His Glu Gln Ala Ala Ala Ala 50 55 60Leu Lys Asn Ala Gly Gln Ala Val Thr Ile Val Ala Gln Tyr Arg Pro65 70 75 80Glu Glu Tyr Ser Arg 8524101PRTHomo sapiens 24Ile Ser Tyr Val Asn Gly Thr Glu Ile Glu Tyr Glu Phe Glu Glu Ile1 5 10 15Thr Leu Glu Arg Gly Asn Ser Gly Leu Gly Phe Ser Ile Ala Gly Gly 20 25 30Thr Asp Asn Pro His Ile Gly Asp Asp Pro Gly Ile Phe Ile Thr Lys 35 40 45Ile Ile Pro Gly Gly Ala Ala Ala Glu Asp Gly Arg Leu Arg Val Asn 50 55 60Asp Cys Ile Leu Arg Val Asn Glu Val Asp Val Ser Glu Val Ser His65 70 75 80Ser Lys Ala Val Glu Ala Leu Lys Glu Ala Gly Ser Ile Val Arg Leu 85 90 95Tyr Val Arg Arg Arg 1002594PRTHomo sapiens 25Ile Ser Val Val Glu Ile Lys Leu Phe Lys Gly Pro Lys Gly Leu Gly1 5 10 15Phe Ser Ile Ala Gly Gly Val Gly Asn Gln His Ile Pro Gly Asp Asn 20 25 30Ser Ile Tyr Val Thr Lys Ile Ile Asp Gly Gly Ala Ala Gln Lys Asp 35 40 45Gly Arg Leu Gln Val Gly Asp Arg Leu Leu Met Val Asn Asn Tyr Ser 50 55 60Leu Glu Glu Val Thr His Glu Glu Ala Val Ala Ile Leu Lys Asn Thr65 70 75

80Ser Glu Val Val Tyr Leu Lys Val Gly Asn Pro Thr Thr Ile 85 902695PRTHomo sapiens 26Ile Trp Ala Val Ser Leu Glu Gly Glu Pro Arg Lys Val Val Leu His1 5 10 15Lys Gly Ser Thr Gly Leu Gly Phe Asn Ile Val Gly Gly Glu Asp Gly 20 25 30Glu Gly Ile Phe Val Ser Phe Ile Leu Ala Gly Gly Pro Ala Asp Leu 35 40 45Ser Gly Glu Leu Gln Arg Gly Asp Gln Ile Leu Ser Val Asn Gly Ile 50 55 60Asp Leu Arg Gly Ala Ser His Glu Gln Ala Ala Ala Ala Leu Lys Gly65 70 75 80Ala Gly Gln Thr Val Thr Ile Ile Ala Gln Tyr Gln Pro Glu Asp 85 90 9527102PRTHomo sapiens 27Gly Ile Pro Tyr Val Glu Glu Pro Arg His Val Lys Val Gln Lys Gly1 5 10 15Ser Glu Pro Leu Gly Ile Ser Ile Val Ser Gly Glu Lys Gly Gly Ile 20 25 30Tyr Val Ser Lys Val Thr Val Gly Ser Ile Ala His Gln Ala Gly Leu 35 40 45Glu Tyr Gly Asp Gln Leu Leu Glu Phe Asn Gly Ile Asn Leu Arg Ser 50 55 60Ala Thr Glu Gln Gln Ala Arg Leu Ile Ile Gly Gln Gln Cys Asp Thr65 70 75 80Ile Thr Ile Leu Ala Gln Tyr Asn Pro His Val His Gln Leu Arg Asn 85 90 95Ser Ser Glx Leu Thr Asp 10028103PRTHomo sapiens 28Gly Ile Leu Ala Gly Asp Ala Asn Lys Lys Thr Leu Glu Pro Arg Val1 5 10 15Val Phe Ile Lys Lys Ser Gln Leu Glu Leu Gly Val His Leu Cys Gly 20 25 30Gly Asn Leu His Gly Val Phe Val Ala Glu Val Glu Asp Asp Ser Pro 35 40 45Ala Lys Gly Pro Asp Gly Leu Val Pro Gly Asp Leu Ile Leu Glu Tyr 50 55 60Gly Ser Leu Asp Val Arg Asn Lys Thr Val Glu Glu Val Tyr Val Glu65 70 75 80Met Leu Lys Pro Arg Asp Gly Val Arg Leu Lys Val Gln Tyr Arg Pro 85 90 95Glu Glu Phe Ile Val Thr Asp 10029141PRTHomo sapiens 29Pro Thr Ser Pro Glu Ile Gln Glu Leu Arg Gln Met Leu Gln Ala Pro1 5 10 15His Phe Lys Ala Leu Leu Ser Ala His Asp Thr Ile Ala Gln Lys Asp 20 25 30Phe Glu Pro Leu Leu Pro Pro Leu Pro Asp Asn Ile Pro Glu Ser Glu 35 40 45Glu Ala Met Arg Ile Val Cys Leu Val Lys Asn Gln Gln Pro Leu Gly 50 55 60Ala Thr Ile Lys Arg His Glu Met Thr Gly Asp Ile Leu Val Ala Arg65 70 75 80Ile Ile His Gly Gly Leu Ala Glu Arg Ser Gly Leu Leu Tyr Ala Gly 85 90 95Asp Lys Leu Val Glu Val Asn Gly Val Ser Val Glu Gly Leu Asp Pro 100 105 110Glu Gln Val Ile His Ile Leu Ala Met Ser Arg Gly Thr Ile Met Phe 115 120 125Lys Val Val Pro Val Ser Asp Pro Pro Val Asn Ser Ser 130 135 1403097PRTHomo sapiens 30Pro Thr Ser Pro Glu Ile Gln Glu Leu Arg Gln Met Leu Gln Ala Pro1 5 10 15His Phe Lys Gly Ala Thr Ile Lys Arg His Glu Met Thr Gly Asp Ile 20 25 30Leu Val Ala Arg Ile Ile His Gly Gly Leu Ala Glu Arg Ser Gly Leu 35 40 45Leu Tyr Ala Gly Asp Lys Leu Val Glu Val Asn Gly Val Ser Val Glu 50 55 60Gly Leu Asp Pro Glu Gln Val Ile His Ile Leu Ala Met Ser Arg Gly65 70 75 80Thr Ile Met Phe Lys Val Val Pro Val Ser Asp Pro Pro Val Asn Ser 85 90 95Ser3193PRTHomo sapiens 31Leu Asn Ile Val Thr Val Thr Leu Asn Met Glu Arg His His Phe Leu1 5 10 15Gly Ile Ser Ile Val Gly Gln Ser Asn Asp Arg Gly Asp Gly Gly Ile 20 25 30Tyr Ile Gly Ser Ile Met Lys Gly Gly Ala Val Ala Ala Asp Gly Arg 35 40 45Ile Glu Pro Gly Asp Met Leu Leu Gln Val Asn Asp Val Asn Phe Glu 50 55 60Asn Met Ser Asn Asp Asp Ala Val Arg Val Leu Arg Glu Ile Val Ser65 70 75 80Gln Thr Gly Pro Ile Ser Leu Thr Val Ala Lys Cys Trp 85 9032100PRTHomo sapiens 32Leu Asn Ile Ile Thr Val Thr Leu Asn Met Glu Lys Tyr Asn Phe Leu1 5 10 15Gly Ile Ser Ile Val Gly Gln Ser Asn Glu Arg Gly Asp Gly Gly Ile 20 25 30Tyr Ile Gly Ser Ile Met Lys Gly Gly Ala Val Ala Ala Asp Gly Arg 35 40 45Ile Glu Pro Gly Asp Met Leu Leu Gln Val Asn Asp Met Asn Phe Glu 50 55 60Asn Met Ser Asn Asp Asp Ala Val Arg Val Leu Arg Asp Ile Val His65 70 75 80Lys Pro Gly Pro Ile Val Leu Thr Val Ala Lys Cys Trp Asp Pro Ser 85 90 95Pro Gln Asn Ser 1003395PRTHomo sapiens 33Ile Ile Thr Val Thr Leu Asn Met Glu Lys Tyr Asn Phe Leu Gly Ile1 5 10 15Ser Ile Val Gly Gln Ser Asn Glu Arg Gly Asp Gly Gly Ile Tyr Ile 20 25 30Gly Ser Ile Met Lys Gly Gly Ala Val Ala Ala Asp Gly Arg Ile Glu 35 40 45Pro Gly Asp Met Leu Leu Gln Val Asn Glu Ile Asn Phe Glu Asn Met 50 55 60Ser Asn Asp Asp Ala Val Arg Val Leu Arg Glu Ile Val His Lys Pro65 70 75 80Gly Pro Ile Thr Leu Thr Val Ala Lys Cys Trp Asp Pro Ser Pro 85 90 953492PRTHomo sapiens 34Thr Thr Gln Gln Ile Asp Leu Gln Gly Pro Gly Pro Trp Gly Phe Arg1 5 10 15Leu Val Gly Arg Lys Asp Phe Glu Gln Pro Leu Ala Ile Ser Arg Val 20 25 30Thr Pro Gly Ser Lys Ala Ala Leu Ala Asn Leu Cys Ile Gly Asp Val 35 40 45Ile Thr Ala Ile Asp Gly Glu Asn Thr Ser Asn Met Thr His Leu Glu 50 55 60Ala Gln Asn Arg Ile Lys Gly Cys Thr Asp Asn Leu Thr Leu Thr Val65 70 75 80Ala Arg Ser Glu His Lys Val Trp Ser Pro Leu Val 85 903589PRTHomo sapiens 35Ile Phe Met Asp Ser Phe Lys Val Val Leu Glu Gly Pro Ala Pro Trp1 5 10 15Gly Phe Arg Leu Gln Gly Gly Lys Asp Phe Asn Val Pro Leu Ser Ile 20 25 30Ser Arg Leu Thr Pro Gly Gly Lys Ala Ala Gln Ala Gly Val Ala Val 35 40 45Gly Asp Trp Val Leu Ser Ile Asp Gly Glu Asn Ala Gly Ser Leu Thr 50 55 60His Ile Glu Ala Gln Asn Lys Ile Arg Ala Cys Gly Glu Arg Leu Ser65 70 75 80Leu Gly Leu Ser Arg Ala Gln Pro Val 8536100PRTHomo sapiens 36Gln Gly His Glu Leu Ala Lys Gln Glu Ile Arg Val Arg Val Glu Lys1 5 10 15Asp Pro Glu Leu Gly Phe Ser Ile Ser Gly Gly Val Gly Gly Arg Gly 20 25 30Asn Pro Phe Arg Pro Asp Asp Asp Gly Ile Phe Val Thr Arg Val Gln 35 40 45Pro Glu Gly Pro Ala Ser Lys Leu Leu Gln Pro Gly Asp Lys Ile Ile 50 55 60Gln Ala Asn Gly Tyr Ser Phe Ile Asn Ile Glu His Gly Gln Ala Val65 70 75 80Ser Leu Leu Lys Thr Phe Gln Asn Thr Val Glu Leu Ile Ile Val Arg 85 90 95Glu Val Ser Ser 1003787PRTHomo sapiens 37Ile Leu Cys Cys Leu Glu Lys Gly Pro Asn Gly Tyr Gly Phe His Leu1 5 10 15His Gly Glu Lys Gly Lys Leu Gly Gln Tyr Ile Arg Leu Val Glu Pro 20 25 30Gly Ser Pro Ala Glu Lys Ala Gly Leu Leu Ala Gly Asp Arg Leu Val 35 40 45Glu Val Asn Gly Glu Asn Val Glu Lys Glu Thr His Gln Gln Val Val 50 55 60Ser Arg Ile Arg Ala Ala Leu Asn Ala Val Arg Leu Leu Val Val Asp65 70 75 80Pro Glu Phe Ile Val Thr Asp 853892PRTHomo sapiens 38Ile Arg Leu Cys Thr Met Lys Lys Gly Pro Ser Gly Tyr Gly Phe Asn1 5 10 15Leu His Ser Asp Lys Ser Lys Pro Gly Gln Phe Ile Arg Ser Val Asp 20 25 30Pro Asp Ser Pro Ala Glu Ala Ser Gly Leu Arg Ala Gln Asp Arg Ile 35 40 45Val Glu Val Asn Gly Val Cys Met Glu Gly Lys Gln His Gly Asp Val 50 55 60Val Ser Ala Ile Arg Ala Gly Gly Asp Glu Thr Lys Leu Leu Val Val65 70 75 80Asp Arg Glu Thr Asp Glu Phe Phe Met Asn Ser Ser 85 9039107PRTHomo sapiens 39Lys Asn Pro Ser Gly Glu Leu Lys Thr Val Thr Leu Ser Lys Met Lys1 5 10 15Gln Ser Leu Gly Ile Ser Ile Ser Gly Gly Ile Glu Ser Lys Val Gln 20 25 30Pro Met Val Lys Ile Glu Lys Ile Phe Pro Gly Gly Ala Ala Phe Leu 35 40 45Ser Gly Ala Leu Gln Ala Gly Phe Glu Leu Val Ala Val Asp Gly Glu 50 55 60Asn Leu Glu Gln Val Thr His Gln Arg Ala Val Asp Thr Ile Arg Arg65 70 75 80Ala Tyr Arg Asn Lys Ala Arg Glu Pro Met Glu Leu Val Val Arg Val 85 90 95Pro Gly Pro Ser Pro Arg Pro Ser Pro Ser Asp 100 1054097PRTHomo sapiens 40Glu Gly His Ser His Pro Arg Val Val Glu Leu Pro Lys Thr Glu Glu1 5 10 15Gly Leu Gly Phe Asn Ile Met Gly Gly Lys Glu Gln Asn Ser Pro Ile 20 25 30Tyr Ile Ser Arg Ile Ile Pro Gly Gly Ile Ala Asp Arg His Gly Gly 35 40 45Leu Lys Arg Gly Asp Gln Leu Leu Ser Val Asn Gly Val Ser Val Glu 50 55 60Gly Glu His His Glu Lys Ala Val Glu Leu Leu Lys Ala Ala Gln Gly65 70 75 80Lys Val Lys Leu Val Val Arg Tyr Thr Pro Lys Val Leu Glu Glu Met 85 90 95Glu4188PRTHomo sapiens 41Pro Gly Ala Pro Tyr Ala Arg Lys Thr Phe Thr Ile Val Gly Asp Ala1 5 10 15Val Gly Trp Gly Phe Val Val Arg Gly Ser Lys Pro Cys His Ile Gln 20 25 30Ala Val Asp Pro Ser Gly Pro Ala Ala Ala Ala Gly Met Lys Val Cys 35 40 45Gln Phe Val Val Ser Val Asn Gly Leu Asn Val Leu His Val Asp Tyr 50 55 60Arg Thr Val Ser Asn Leu Ile Leu Thr Gly Pro Arg Thr Ile Val Met65 70 75 80Glu Val Met Glu Glu Leu Glu Cys 854297PRTHomo sapiens 42Gly Gln Tyr Gly Gly Glu Thr Val Lys Ile Val Arg Ile Glu Lys Ala1 5 10 15Arg Asp Ile Pro Leu Gly Ala Thr Val Arg Asn Glu Met Asp Ser Val 20 25 30Ile Ile Ser Arg Ile Val Lys Gly Gly Ala Ala Glu Lys Ser Gly Leu 35 40 45Leu His Glu Gly Asp Glu Val Leu Glu Ile Asn Gly Ile Glu Ile Arg 50 55 60Gly Lys Asp Val Asn Glu Val Phe Asp Leu Leu Ser Asp Met His Gly65 70 75 80Thr Leu Thr Phe Val Leu Ile Pro Ser Gln Gln Ile Lys Pro Pro Pro 85 90 95Ala4398PRTHomo sapiens 43Ile Leu Ala His Val Lys Gly Ile Glu Lys Glu Val Asn Val Tyr Lys1 5 10 15Ser Glu Asp Ser Leu Gly Leu Thr Ile Thr Asp Asn Gly Val Gly Tyr 20 25 30Ala Phe Ile Lys Arg Ile Lys Asp Gly Gly Val Ile Asp Ser Val Lys 35 40 45Thr Ile Cys Val Gly Asp His Ile Glu Ser Ile Asn Gly Glu Asn Ile 50 55 60Val Gly Trp Arg His Tyr Asp Val Ala Lys Lys Leu Lys Glu Leu Lys65 70 75 80Lys Glu Glu Leu Phe Thr Met Lys Leu Ile Glu Pro Lys Lys Ala Phe 85 90 95Glu Ile44104PRTHomo sapiens 44Lys Pro Ser Gln Ala Ser Gly His Phe Ser Val Glu Leu Val Arg Gly1 5 10 15Tyr Ala Gly Phe Gly Leu Thr Leu Gly Gly Gly Arg Asp Val Ala Gly 20 25 30Asp Thr Pro Leu Ala Val Arg Gly Leu Leu Lys Asp Gly Pro Ala Gln 35 40 45Arg Cys Gly Arg Leu Glu Val Gly Asp Leu Val Leu His Ile Asn Gly 50 55 60Glu Ser Thr Gln Gly Leu Thr His Ala Gln Ala Val Glu Arg Ile Arg65 70 75 80Ala Gly Gly Pro Gln Leu His Leu Val Ile Arg Arg Pro Leu Glu Thr 85 90 95His Pro Gly Lys Pro Arg Gly Val 10045107PRTHomo sapiens 45Pro Val Met Ser Gln Cys Ala Cys Leu Glu Glu Val His Leu Pro Asn1 5 10 15Ile Lys Pro Gly Glu Gly Leu Gly Met Tyr Ile Lys Ser Thr Tyr Asp 20 25 30Gly Leu His Val Ile Thr Gly Thr Thr Glu Asn Ser Pro Ala Asp Arg 35 40 45Ser Gln Lys Ile His Ala Gly Asp Glu Val Ile Gln Val Asn Gln Gln 50 55 60Thr Val Val Gly Trp Gln Leu Lys Asn Leu Val Lys Lys Leu Arg Glu65 70 75 80Asn Pro Thr Gly Val Val Leu Leu Leu Lys Lys Arg Pro Thr Gly Ser 85 90 95Phe Asn Phe Thr Pro Glu Phe Ile Val Thr Asp 100 10546100PRTHomo sapiens 46Leu Asp Asp Glu Glu Asp Ser Val Lys Ile Ile Arg Leu Val Lys Asn1 5 10 15Arg Glu Pro Leu Gly Ala Thr Ile Lys Lys Asp Glu Gln Thr Gly Ala 20 25 30Ile Ile Val Ala Arg Ile Met Arg Gly Gly Ala Ala Asp Arg Ser Gly 35 40 45Leu Ile His Val Gly Asp Glu Leu Arg Glu Val Asn Gly Ile Pro Val 50 55 60Glu Asp Lys Arg Pro Glu Glu Ile Ile Gln Ile Leu Ala Gln Ser Gln65 70 75 80Gly Ala Ile Thr Phe Lys Ile Ile Pro Gly Ser Lys Glu Glu Thr Pro 85 90 95Ser Asn Ser Ser 1004783PRTHomo sapiens 47Val Val Glu Leu Met Lys Lys Glu Gly Thr Thr Leu Gly Leu Thr Val1 5 10 15Ser Gly Gly Ile Asp Lys Asp Gly Lys Pro Arg Val Ser Asn Leu Arg 20 25 30Gln Gly Gly Ile Ala Ala Arg Ser Asp Gln Leu Asp Val Gly Asp Tyr 35 40 45Ile Lys Ala Val Asn Gly Ile Asn Leu Ala Lys Phe Arg His Asp Glu 50 55 60Ile Ile Ser Leu Leu Lys Asn Val Gly Glu Arg Val Val Leu Glu Val65 70 75 80Glu Tyr Glu48110PRTHomo sapiens 48Arg Ser Ser Val Ile Phe Arg Thr Val Glu Val Thr Leu His Lys Glu1 5 10 15Gly Asn Thr Phe Gly Phe Val Ile Arg Gly Gly Ala His Asp Asp Arg 20 25 30Asn Lys Ser Arg Pro Val Val Ile Thr Cys Val Arg Pro Gly Gly Pro 35 40 45Ala Asp Arg Glu Gly Thr Ile Lys Pro Gly Asp Arg Leu Leu Ser Val 50 55 60Asp Gly Ile Arg Leu Leu Gly Thr Thr His Ala Glu Ala Met Ser Ile65 70 75 80Leu Lys Gln Cys Gly Gln Glu Ala Ala Leu Leu Ile Glu Tyr Asp Val 85 90 95Ser Val Met Asp Ser Val Ala Thr Ala Ser Gly Asn Ser Ser 100 105 11049106PRTHomo sapiens 49His Val Ala Thr Ala Ser Gly Pro Leu Leu Val Glu Val Ala Lys Thr1 5 10 15Pro Gly Ala Ser Leu Gly Val Ala Leu Thr Thr Ser Met Cys Cys Asn 20 25 30Lys Gln Val Ile Val Ile Asp Lys Ile Lys Ser Ala Ser Ile Ala Asp 35 40 45Arg Cys Gly Ala Leu His Val Gly Asp His Ile Leu Ser Ile Asp Gly 50 55 60Thr Ser Met Glu Tyr Cys Thr Leu Ala Glu Ala Thr Gln Phe Leu Ala65 70 75 80Asn Thr Thr Asp Gln Val Lys Leu Glu Ile Leu Pro His His Gln Thr 85 90 95Arg Leu Ala Leu Lys Gly Pro Asn Ser Ser 100 1055097PRTHomo sapiens 50Thr Glu Thr Thr Glu Val Val Leu Thr Ala Asp Pro Val Thr Gly Phe1 5 10 15Gly Ile Gln Leu Gln Gly Ser Val Phe Ala Thr Glu Thr Leu Ser Ser

20 25 30Pro Pro Leu Ile Ser Tyr Ile Glu Ala Asp Ser Pro Ala Glu Arg Cys 35 40 45Gly Val Leu Gln Ile Gly Asp Arg Val Met Ala Ile Asn Gly Ile Pro 50 55 60Thr Glu Asp Ser Thr Phe Glu Glu Ala Ser Gln Leu Leu Arg Asp Ser65 70 75 80Ser Ile Thr Ser Lys Val Thr Leu Glu Ile Glu Phe Asp Val Ala Glu 85 90 95Ser51101PRTHomo sapiens 51Ala Glu Ser Val Ile Pro Ser Ser Gly Thr Phe His Val Lys Leu Pro1 5 10 15Lys Lys His Asn Val Glu Leu Gly Ile Thr Ile Ser Ser Pro Ser Ser 20 25 30Arg Lys Pro Gly Asp Pro Leu Val Ile Ser Asp Ile Lys Lys Gly Ser 35 40 45Val Ala His Arg Thr Gly Thr Leu Glu Leu Gly Asp Lys Leu Leu Ala 50 55 60Ile Asp Asn Ile Arg Leu Asp Asn Cys Ser Met Glu Asp Ala Val Gln65 70 75 80Ile Leu Gln Gln Cys Glu Asp Leu Val Lys Leu Lys Ile Arg Lys Asp 85 90 95Glu Asp Asn Ser Asp 1005290PRTHomo sapiens 52Ile Tyr Thr Val Glu Leu Lys Arg Tyr Gly Gly Pro Leu Gly Ile Thr1 5 10 15Ile Ser Gly Thr Glu Glu Pro Phe Asp Pro Ile Ile Ile Ser Ser Leu 20 25 30Thr Lys Gly Gly Leu Ala Glu Arg Thr Gly Ala Ile His Ile Gly Asp 35 40 45Arg Ile Leu Ala Ile Asn Ser Ser Ser Leu Lys Gly Lys Pro Leu Ser 50 55 60Glu Ala Ile His Leu Leu Gln Met Ala Gly Glu Thr Val Thr Leu Lys65 70 75 80Ile Lys Lys Gln Thr Asp Ala Gln Ser Ala 85 905395PRTHomo sapiens 53Ile Met Ser Pro Thr Pro Val Glu Leu His Lys Val Thr Leu Tyr Lys1 5 10 15Asp Ser Asp Met Glu Asp Phe Gly Phe Ser Val Ala Asp Gly Leu Leu 20 25 30Glu Lys Gly Val Tyr Val Lys Asn Ile Arg Pro Ala Gly Pro Gly Asp 35 40 45Leu Gly Gly Leu Lys Pro Tyr Asp Arg Leu Leu Gln Val Asn His Val 50 55 60Arg Thr Arg Asp Phe Asp Cys Cys Leu Val Val Pro Leu Ile Ala Glu65 70 75 80Ser Gly Asn Lys Leu Asp Leu Val Ile Ser Arg Asn Pro Leu Ala 85 90 955488PRTHomo sapiens 54Ser Arg Gly Cys Glu Thr Arg Glu Leu Ala Leu Pro Arg Asp Gly Gln1 5 10 15Gly Arg Leu Gly Phe Glu Val Asp Ala Glu Gly Phe Val Thr His Val 20 25 30Glu Arg Phe Thr Phe Ala Glu Thr Ala Gly Leu Arg Pro Gly Ala Arg 35 40 45Leu Leu Arg Val Cys Gly Gln Thr Leu Pro Ser Leu Arg Pro Glu Ala 50 55 60Ala Ala Gln Leu Leu Arg Ser Ala Pro Lys Val Cys Val Thr Val Leu65 70 75 80Pro Pro Asp Glu Ser Gly Arg Pro 855595PRTHomo sapiens 55Ala Lys Ala Lys Trp Arg Gln Val Val Leu Gln Lys Ala Ser Arg Glu1 5 10 15Ser Pro Leu Gln Phe Ser Leu Asn Gly Gly Ser Glu Lys Gly Phe Gly 20 25 30Ile Phe Val Glu Gly Val Glu Pro Gly Ser Lys Ala Ala Asp Ser Gly 35 40 45Leu Lys Arg Gly Asp Gln Ile Met Glu Val Asn Gly Gln Asn Phe Glu 50 55 60Asn Ile Thr Phe Met Lys Ala Val Glu Ile Leu Arg Asn Asn Thr His65 70 75 80Leu Ala Leu Thr Val Lys Thr Asn Ile Phe Val Phe Lys Glu Leu 85 90 955689PRTHomo sapiens 56Leu Glu Asn Val Ile Ala Lys Ser Leu Leu Ile Lys Ser Asn Glu Gly1 5 10 15Ser Tyr Gly Phe Gly Leu Glu Asp Lys Asn Lys Val Pro Ile Ile Lys 20 25 30Leu Val Glu Lys Gly Ser Asn Ala Glu Met Ala Gly Met Glu Val Gly 35 40 45Lys Lys Ile Phe Ala Ile Asn Gly Asp Leu Val Phe Met Arg Pro Phe 50 55 60Asn Glu Val Asp Cys Phe Leu Lys Ser Cys Leu Asn Ser Arg Lys Pro65 70 75 80Leu Arg Val Leu Val Ser Thr Lys Pro 855782PRTHomo sapiens 57Pro Arg Glu Thr Val Lys Ile Pro Asp Ser Ala Asp Gly Leu Gly Phe1 5 10 15Gln Ile Arg Gly Phe Gly Pro Ser Val Val His Ala Val Gly Arg Gly 20 25 30Thr Val Ala Ala Ala Ala Gly Leu His Pro Gly Gln Cys Ile Ile Lys 35 40 45Val Asn Gly Ile Asn Val Ser Lys Glu Thr His Ala Ser Val Ile Ala 50 55 60His Val Thr Ala Cys Arg Lys Tyr Arg Arg Pro Thr Lys Gln Asp Ser65 70 75 80Ile Gln58100PRTHomo sapiens 58Glu Asp Phe Cys Tyr Val Phe Thr Val Glu Leu Glu Arg Gly Pro Ser1 5 10 15Gly Leu Gly Met Gly Leu Ile Asp Gly Met His Thr His Leu Gly Ala 20 25 30Pro Gly Leu Tyr Ile Gln Thr Leu Leu Pro Gly Ser Pro Ala Ala Ala 35 40 45Asp Gly Arg Leu Ser Leu Gly Asp Arg Ile Leu Glu Val Asn Gly Ser 50 55 60Ser Leu Leu Gly Leu Gly Tyr Leu Arg Ala Val Asp Leu Ile Arg His65 70 75 80Gly Gly Lys Lys Met Arg Phe Leu Val Ala Lys Ser Asp Val Glu Thr 85 90 95Ala Lys Lys Ile 10059109PRTHomo sapiens 59Leu Thr Glu Phe Gln Asp Lys Gln Ile Lys Asp Trp Lys Lys Arg Phe1 5 10 15Ile Gly Ile Arg Met Arg Thr Ile Thr Pro Ser Leu Val Asp Glu Leu 20 25 30Lys Ala Ser Asn Pro Asp Phe Pro Glu Val Ser Ser Gly Ile Tyr Val 35 40 45Gln Glu Val Ala Pro Asn Ser Pro Ser Gln Arg Gly Gly Ile Gln Asp 50 55 60Gly Asp Ile Ile Val Lys Val Asn Gly Arg Pro Leu Val Asp Ser Ser65 70 75 80Glu Leu Gln Glu Ala Val Leu Thr Glu Ser Pro Leu Leu Leu Glu Val 85 90 95Arg Arg Gly Asn Asp Asp Leu Leu Phe Ser Asn Ser Ser 100 1056097PRTHomo sapiens 60His Lys Lys Tyr Leu Gly Leu Gln Met Leu Ser Leu Thr Val Pro Leu1 5 10 15Ser Glu Glu Leu Lys Met His Tyr Pro Asp Phe Pro Asp Val Ser Ser 20 25 30Gly Val Tyr Val Cys Lys Val Val Glu Gly Thr Ala Ala Gln Ser Ser 35 40 45Gly Leu Arg Asp His Asp Val Ile Val Asn Ile Asn Gly Lys Pro Ile 50 55 60Thr Thr Thr Thr Asp Val Val Lys Ala Leu Asp Ser Asp Ser Leu Ser65 70 75 80Met Ala Val Leu Arg Gly Lys Asp Asn Leu Leu Leu Thr Val Asn Ser 85 90 95Ser61104PRTHomo sapiens 61Ile Trp Gln Ile Glu Tyr Ile Asp Ile Glu Arg Pro Ser Thr Gly Gly1 5 10 15Leu Gly Phe Ser Val Val Ala Leu Arg Ser Gln Asn Leu Gly Lys Val 20 25 30Asp Ile Phe Val Lys Asp Val Gln Pro Gly Ser Val Ala Asp Arg Asp 35 40 45Gln Arg Leu Lys Glu Asn Asp Gln Ile Leu Ala Ile Asn His Thr Pro 50 55 60Leu Asp Gln Asn Ile Ser His Gln Gln Ala Ile Ala Leu Leu Gln Gln65 70 75 80Thr Thr Gly Ser Leu Arg Leu Ile Val Ala Arg Glu Pro Val His Thr 85 90 95Lys Ser Ser Thr Ser Ser Ser Glu 1006278PRTHomo sapiens 62Pro Gly His Val Glu Glu Val Glu Leu Ile Asn Asp Gly Ser Gly Leu1 5 10 15Gly Phe Gly Ile Val Gly Gly Lys Thr Ser Gly Val Val Val Arg Thr 20 25 30Ile Val Pro Gly Gly Leu Ala Asp Arg Asp Gly Arg Leu Gln Thr Gly 35 40 45Asp His Ile Leu Lys Ile Gly Gly Thr Asn Val Gln Gly Met Thr Ser 50 55 60Glu Gln Val Ala Gln Val Leu Arg Asn Cys Gly Asn Ser Ser65 70 7563111PRTHomo sapiens 63Pro Gly Ser Asp Ser Ser Leu Phe Glu Thr Tyr Asn Val Glu Leu Val1 5 10 15Arg Lys Asp Gly Gln Ser Leu Gly Ile Arg Ile Val Gly Tyr Val Gly 20 25 30Thr Ser His Thr Gly Glu Ala Ser Gly Ile Tyr Val Lys Ser Ile Ile 35 40 45Pro Gly Ser Ala Ala Tyr His Asn Gly His Ile Gln Val Asn Asp Lys 50 55 60Ile Val Ala Val Asp Gly Val Asn Ile Gln Gly Phe Ala Asn His Asp65 70 75 80Val Val Glu Val Leu Arg Asn Ala Gly Gln Val Val His Leu Thr Leu 85 90 95Val Arg Arg Lys Thr Ser Ser Ser Thr Ser Arg Ile His Arg Asp 100 105 1106496PRTHomo sapiens 64Asn Ser Asp Asp Ala Glu Leu Gln Lys Tyr Ser Lys Leu Leu Pro Ile1 5 10 15His Thr Leu Arg Leu Gly Val Glu Val Asp Ser Phe Asp Gly His His 20 25 30Tyr Ile Ser Ser Ile Val Ser Gly Gly Pro Val Asp Thr Leu Gly Leu 35 40 45Leu Gln Pro Glu Asp Glu Leu Leu Glu Val Asn Gly Met Gln Leu Tyr 50 55 60Gly Lys Ser Arg Arg Glu Ala Val Ser Phe Leu Lys Glu Val Pro Pro65 70 75 80Pro Phe Thr Leu Val Cys Cys Arg Arg Leu Phe Asp Asp Glu Ala Ser 85 90 9565102PRTHomo sapiens 65Leu Ser Ser Pro Glu Val Lys Ile Val Glu Leu Val Lys Asp Cys Lys1 5 10 15Gly Leu Gly Phe Ser Ile Leu Asp Tyr Gln Asp Pro Leu Asp Pro Thr 20 25 30Arg Ser Val Ile Val Ile Arg Ser Leu Val Ala Asp Gly Val Ala Glu 35 40 45Arg Ser Gly Gly Leu Leu Pro Gly Asp Arg Leu Val Ser Val Asn Glu 50 55 60Tyr Cys Leu Asp Asn Thr Ser Leu Ala Glu Ala Val Glu Ile Leu Lys65 70 75 80Ala Val Pro Pro Gly Leu Val His Leu Gly Ile Cys Lys Pro Leu Val 85 90 95Glu Phe Ile Val Thr Asp 10066119PRTHomo sapiens 66Pro Asn Phe Ser His Trp Gly Pro Pro Arg Ile Val Glu Ile Phe Arg1 5 10 15Glu Pro Asn Val Ser Leu Gly Ile Ser Ile Val Val Gly Gln Thr Val 20 25 30Ile Lys Arg Leu Lys Asn Gly Glu Glu Leu Lys Gly Ile Phe Ile Lys 35 40 45Gln Val Leu Glu Asp Ser Pro Ala Gly Lys Thr Asn Ala Leu Lys Thr 50 55 60Gly Asp Lys Ile Leu Glu Val Ser Gly Val Asp Leu Gln Asn Ala Ser65 70 75 80His Ser Glu Ala Val Glu Ala Ile Lys Asn Ala Gly Asn Pro Val Val 85 90 95Phe Ile Val Gln Ser Leu Ser Ser Thr Pro Arg Val Ile Pro Asn Val 100 105 110His Asn Lys Ala Asn Ser Ser 1156799PRTHomo sapiens 67Pro Gly Glu Leu His Ile Ile Glu Leu Glu Lys Asp Lys Asn Gly Leu1 5 10 15Gly Leu Ser Leu Ala Gly Asn Lys Asp Arg Ser Arg Met Ser Ile Phe 20 25 30Val Val Gly Ile Asn Pro Glu Gly Pro Ala Ala Ala Asp Gly Arg Met 35 40 45Arg Ile Gly Asp Glu Leu Leu Glu Ile Asn Asn Gln Ile Leu Tyr Gly 50 55 60Arg Ser His Gln Asn Ala Ser Ala Ile Ile Lys Thr Ala Pro Ser Lys65 70 75 80Val Lys Leu Val Phe Ile Arg Asn Glu Asp Ala Val Asn Gln Met Ala 85 90 95Asn Ser Ser6893PRTHomo sapiens 68Pro Ala Thr Cys Pro Ile Val Pro Gly Gln Glu Met Ile Ile Glu Ile1 5 10 15Ser Lys Gly Arg Ser Gly Leu Gly Leu Ser Ile Val Gly Gly Lys Asp 20 25 30Thr Pro Leu Asn Ala Ile Val Ile His Glu Val Tyr Glu Glu Gly Ala 35 40 45Ala Ala Arg Asp Gly Arg Leu Trp Ala Gly Asp Gln Ile Leu Glu Val 50 55 60Asn Gly Val Asp Leu Arg Asn Ser Ser His Glu Glu Ala Ile Thr Ala65 70 75 80Leu Arg Gln Thr Pro Gln Lys Val Arg Leu Val Val Tyr 85 9069103PRTHomo sapiens 69Ile Leu Thr Leu Thr Ile Leu Arg Gln Thr Gly Gly Leu Gly Ile Ser1 5 10 15Ile Ala Gly Gly Lys Gly Ser Thr Pro Tyr Lys Gly Asp Asp Glu Gly 20 25 30Ile Phe Ile Ser Arg Val Ser Glu Glu Gly Pro Ala Ala Arg Ala Gly 35 40 45Val Arg Val Gly Asp Lys Leu Leu Glu Val Asn Gly Val Ala Leu Gln 50 55 60Gly Ala Glu His His Glu Ala Val Glu Ala Leu Arg Gly Ala Gly Thr65 70 75 80Ala Val Gln Met Arg Val Trp Arg Glu Arg Met Val Glu Pro Glu Asn 85 90 95Ala Glu Phe Ile Val Thr Asp 1007097PRTHomo sapiens 70Pro Leu Arg Gln Arg His Val Ala Cys Leu Ala Arg Ser Glu Arg Gly1 5 10 15Leu Gly Phe Ser Ile Ala Gly Gly Lys Gly Ser Thr Pro Tyr Arg Ala 20 25 30Gly Asp Ala Gly Ile Phe Val Ser Arg Ile Ala Glu Gly Gly Ala Ala 35 40 45His Arg Ala Gly Thr Leu Gln Val Gly Asp Arg Val Leu Ser Ile Asn 50 55 60Gly Val Asp Val Thr Glu Ala Arg His Asp His Ala Val Ser Leu Leu65 70 75 80Thr Ala Ala Ser Pro Thr Ile Ala Leu Leu Leu Glu Arg Glu Ala Gly 85 90 95Gly71106PRTHomo sapiens 71Ile Leu Glu Gly Pro Tyr Pro Val Glu Glu Ile Arg Leu Pro Arg Ala1 5 10 15Gly Gly Pro Leu Gly Leu Ser Ile Val Gly Gly Ser Asp His Ser Ser 20 25 30His Pro Phe Gly Val Gln Glu Pro Gly Val Phe Ile Ser Lys Val Leu 35 40 45Pro Arg Gly Leu Ala Ala Arg Ser Gly Leu Arg Val Gly Asp Arg Ile 50 55 60Leu Ala Val Asn Gly Gln Asp Val Arg Asp Ala Thr His Gln Glu Ala65 70 75 80Val Ser Ala Leu Leu Arg Pro Cys Leu Glu Leu Ser Leu Leu Val Arg 85 90 95Arg Asp Pro Ala Glu Phe Ile Val Thr Asp 100 10572105PRTHomo sapiens 72Arg Glu Leu Cys Ile Gln Lys Ala Pro Gly Glu Arg Leu Gly Ile Ser1 5 10 15Ile Arg Gly Gly Ala Arg Gly His Ala Gly Asn Pro Arg Asp Pro Thr 20 25 30Asp Glu Gly Ile Phe Ile Ser Lys Val Ser Pro Thr Gly Ala Ala Gly 35 40 45Arg Asp Gly Arg Leu Arg Val Gly Leu Arg Leu Leu Glu Val Asn Gln 50 55 60Gln Ser Leu Leu Gly Leu Thr His Gly Glu Ala Val Gln Leu Leu Arg65 70 75 80Ser Val Gly Asp Thr Leu Thr Val Leu Val Cys Asp Gly Phe Glu Ala 85 90 95Ser Thr Asp Ala Ala Leu Glu Val Ser 100 1057391PRTHomo sapiens 73Pro His Gln Pro Ile Val Ile His Ser Ser Gly Lys Asn Tyr Gly Phe1 5 10 15Thr Ile Arg Ala Ile Arg Val Tyr Val Gly Asp Ser Asp Ile Tyr Thr 20 25 30Val His His Ile Val Trp Asn Val Glu Glu Gly Ser Pro Ala Cys Gln 35 40 45Ala Gly Leu Lys Ala Gly Asp Leu Ile Thr His Ile Asn Gly Glu Pro 50 55 60Val His Gly Leu Val His Thr Glu Val Ile Glu Leu Leu Leu Lys Ser65 70 75 80Gly Asn Lys Val Ser Ile Thr Thr Thr Pro Phe 85 9074105PRTHomo sapiens 74Ile Leu Ala Cys Ala Ala Lys Ala Lys Arg Arg Leu Met Thr Leu Thr1 5 10 15Lys Pro Ser Arg Glu Ala Pro Leu Pro Phe Ile Leu Leu Gly Gly Ser 20 25 30Glu Lys Gly Phe Gly Ile Phe Val Asp Ser Val Asp Ser Gly Ser Lys 35 40 45Ala Thr Glu Ala Gly Leu Lys Arg Gly Asp Gln Ile Leu Glu Val Asn 50 55 60Gly Gln Asn Phe Glu Asn Ile Gln Leu Ser Lys Ala Met Glu Ile Leu65 70 75 80Arg Asn Asn Thr His Leu Ser Ile Thr Val Lys Thr Asn Leu Phe Val 85 90 95Phe Lys Glu Leu Leu Thr Asn Ser Ser 100 1057588PRTHomo sapiens 75Ile

Pro Pro Ala Pro Arg Lys Val Glu Met Arg Arg Asp Pro Val Leu1 5 10 15Gly Phe Gly Phe Val Ala Gly Ser Glu Lys Pro Val Val Val Arg Ser 20 25 30Val Thr Pro Gly Gly Pro Ser Glu Gly Lys Leu Ile Pro Gly Asp Gln 35 40 45Ile Val Met Ile Asn Asp Glu Pro Val Ser Ala Ala Pro Arg Glu Arg 50 55 60Val Ile Asp Leu Val Arg Ser Cys Lys Glu Ser Ile Leu Leu Thr Val65 70 75 80Ile Gln Pro Tyr Pro Ser Pro Lys 8576101PRTHomo sapiens 76Leu Asn Lys Arg Thr Thr Met Pro Lys Asp Ser Gly Ala Leu Leu Gly1 5 10 15Leu Lys Val Val Gly Gly Lys Met Thr Asp Leu Gly Arg Leu Gly Ala 20 25 30Phe Ile Thr Lys Val Lys Lys Gly Ser Leu Ala Asp Val Val Gly His 35 40 45Leu Arg Ala Gly Asp Glu Val Leu Glu Trp Asn Gly Lys Pro Leu Pro 50 55 60Gly Ala Thr Asn Glu Glu Val Tyr Asn Ile Ile Leu Glu Ser Lys Ser65 70 75 80Glu Pro Gln Val Glu Ile Ile Val Ser Arg Pro Ile Gly Asp Ile Pro 85 90 95Arg Ile His Arg Asp 1007779PRTHomo sapiens 77Gln Arg Cys Val Ile Ile Gln Lys Asp Gln His Gly Phe Gly Phe Thr1 5 10 15Val Ser Gly Asp Arg Ile Val Leu Val Gln Ser Val Arg Pro Gly Gly 20 25 30Ala Ala Met Lys Ala Gly Val Lys Glu Gly Asp Arg Ile Ile Lys Val 35 40 45Asn Gly Thr Met Val Thr Asn Ser Ser His Leu Glu Val Val Lys Leu 50 55 60Ile Lys Ser Gly Ala Tyr Val Ala Leu Thr Leu Leu Gly Ser Ser65 70 757887PRTHomo sapiens 78Ile Leu Val Gln Arg Cys Val Ile Ile Gln Lys Asp Asp Asn Gly Phe1 5 10 15Gly Leu Thr Val Ser Gly Asp Asn Pro Val Phe Val Gln Ser Val Lys 20 25 30Glu Asp Gly Ala Ala Met Arg Ala Gly Val Gln Thr Gly Asp Arg Ile 35 40 45Ile Lys Val Asn Gly Thr Leu Val Thr His Ser Asn His Leu Glu Val 50 55 60Val Lys Leu Ile Lys Ser Gly Ser Tyr Val Ala Leu Thr Val Gln Gly65 70 75 80Arg Pro Pro Gly Asn Ser Ser 857979PRTHomo sapiens 79Ser Val Glu Met Thr Leu Arg Arg Asn Gly Leu Gly Gln Leu Gly Phe1 5 10 15His Val Asn Tyr Glu Gly Ile Val Ala Asp Val Glu Pro Tyr Gly Tyr 20 25 30Ala Trp Gln Ala Gly Leu Arg Gln Gly Ser Arg Leu Val Glu Ile Cys 35 40 45Lys Val Ala Val Ala Thr Leu Ser His Glu Gln Met Ile Asp Leu Leu 50 55 60Arg Thr Ser Val Thr Val Lys Val Val Ile Ile Pro Pro His Asp65 70 758096PRTHomo sapiens 80Leu Lys Val Met Thr Ser Gly Trp Glu Thr Val Asp Met Thr Leu Arg1 5 10 15Arg Asn Gly Leu Gly Gln Leu Gly Phe His Val Lys Tyr Asp Gly Thr 20 25 30Val Ala Glu Val Glu Asp Tyr Gly Phe Ala Trp Gln Ala Gly Leu Arg 35 40 45Gln Gly Ser Arg Leu Val Glu Ile Cys Lys Val Ala Val Val Thr Leu 50 55 60Thr His Asp Gln Met Ile Asp Leu Leu Arg Thr Ser Val Thr Val Lys65 70 75 80Val Val Ile Ile Pro Pro Phe Glu Asp Gly Thr Pro Arg Arg Gly Trp 85 90 9581105PRTHomo sapiens 81His Tyr Ile Phe Pro His Ala Arg Ile Lys Ile Thr Arg Asp Ser Lys1 5 10 15Asp His Thr Val Ser Gly Asn Gly Leu Gly Ile Arg Ile Val Gly Gly 20 25 30Lys Glu Ile Pro Gly His Ser Gly Glu Ile Gly Ala Tyr Ile Ala Lys 35 40 45Ile Leu Pro Gly Gly Ser Ala Glu Gln Thr Gly Lys Leu Met Glu Gly 50 55 60Met Gln Val Leu Glu Trp Asn Gly Ile Pro Leu Thr Ser Lys Thr Tyr65 70 75 80Glu Glu Val Gln Ser Ile Ile Ser Gln Gln Ser Gly Glu Ala Glu Ile 85 90 95Cys Val Arg Leu Asp Leu Asn Met Leu 100 10582103PRTHomo sapiens 82Leu Cys Gly Ser Leu Arg Pro Pro Ile Val Ile His Ser Ser Gly Lys1 5 10 15Lys Tyr Gly Phe Ser Leu Arg Ala Ile Arg Val Tyr Met Gly Asp Ser 20 25 30Asp Val Tyr Thr Val His His Val Val Trp Ser Val Glu Asp Gly Ser 35 40 45Pro Ala Gln Glu Ala Gly Leu Arg Ala Gly Asp Leu Ile Thr His Ile 50 55 60Asn Gly Glu Ser Val Leu Gly Leu Val His Met Asp Val Val Glu Leu65 70 75 80Leu Leu Lys Ser Gly Asn Lys Ile Ser Leu Arg Thr Thr Ala Leu Glu 85 90 95Asn Thr Ser Ile Lys Val Gly 1008386PRTHomo sapiens 83Ser Tyr Ser Val Thr Leu Thr Gly Pro Gly Pro Trp Gly Phe Arg Leu1 5 10 15Gln Gly Gly Lys Asp Phe Asn Met Pro Leu Thr Ile Ser Arg Ile Thr 20 25 30Pro Gly Ser Lys Ala Ala Gln Ser Gln Leu Ser Gln Gly Asp Leu Val 35 40 45Val Ala Ile Asp Gly Val Asn Thr Asp Thr Met Thr His Leu Glu Ala 50 55 60Gln Asn Lys Ile Lys Ser Ala Ser Tyr Asn Leu Ser Leu Thr Leu Gln65 70 75 80Lys Ser Lys Asn Ser Ser 858491PRTHomo sapiens 84Ile Ser Arg Asp Ser Gly Ala Met Leu Gly Leu Lys Val Val Gly Gly1 5 10 15Lys Met Thr Glu Ser Gly Arg Leu Cys Ala Phe Ile Thr Lys Val Lys 20 25 30Lys Gly Ser Leu Ala Asp Thr Val Gly His Leu Arg Pro Gly Asp Glu 35 40 45Val Leu Glu Trp Asn Gly Arg Leu Leu Gln Gly Ala Thr Phe Glu Glu 50 55 60Val Tyr Asn Ile Ile Leu Glu Ser Lys Pro Glu Pro Gln Val Glu Leu65 70 75 80Val Val Ser Arg Pro Ile Ala Ile His Arg Asp 85 9085101PRTHomo sapiens 85Ile Ser Ala Leu Gly Ser Met Arg Pro Pro Ile Ile Ile His Arg Ala1 5 10 15Gly Lys Lys Tyr Gly Phe Thr Leu Arg Ala Ile Arg Val Tyr Met Gly 20 25 30Asp Ser Asp Val Tyr Thr Val His His Met Val Trp His Val Glu Asp 35 40 45Gly Gly Pro Ala Ser Glu Ala Gly Leu Arg Gln Gly Asp Leu Ile Thr 50 55 60His Val Asn Gly Glu Pro Val His Gly Leu Val His Thr Glu Val Val65 70 75 80Glu Leu Ile Leu Lys Ser Gly Asn Lys Val Ala Ile Ser Thr Thr Pro 85 90 95Leu Glu Asn Ser Ser 1008694PRTHomo sapiens 86Phe Ser Asp Met Arg Ile Ser Ile Asn Gln Thr Pro Gly Lys Ser Leu1 5 10 15Asp Phe Gly Phe Thr Ile Lys Trp Asp Ile Pro Gly Ile Phe Val Ala 20 25 30Ser Val Glu Ala Gly Ser Pro Ala Glu Phe Ser Gln Leu Gln Val Asp 35 40 45Asp Glu Ile Ile Ala Ile Asn Asn Thr Lys Phe Ser Tyr Asn Asp Ser 50 55 60Lys Glu Trp Glu Glu Ala Met Ala Lys Ala Gln Glu Thr Gly His Leu65 70 75 80Val Met Asp Val Arg Arg Tyr Gly Lys Ala Gly Ser Pro Glu 85 908798PRTHomo sapiens 87Gln Ser Ala His Leu Glu Val Ile Gln Leu Ala Asn Ile Lys Pro Ser1 5 10 15Glu Gly Leu Gly Met Tyr Ile Lys Ser Thr Tyr Asp Gly Leu His Val 20 25 30Ile Thr Gly Thr Thr Glu Asn Ser Pro Ala Asp Arg Cys Lys Lys Ile 35 40 45His Ala Gly Asp Glu Val Ile Gln Val Asn His Gln Thr Val Val Gly 50 55 60Trp Gln Leu Lys Asn Leu Val Asn Ala Leu Arg Glu Asp Pro Ser Gly65 70 75 80Val Ile Leu Thr Leu Lys Lys Arg Pro Gln Ser Met Leu Thr Ser Ala 85 90 95Pro Ala88100PRTHomo sapiens 88Ile Leu Thr Gln Thr Leu Ile Pro Val Arg His Thr Val Lys Ile Asp1 5 10 15Lys Asp Thr Leu Leu Gln Asp Tyr Gly Phe His Ile Ser Glu Ser Leu 20 25 30Pro Leu Thr Val Val Ala Val Thr Ala Gly Gly Ser Ala His Gly Lys 35 40 45Leu Phe Pro Gly Asp Gln Ile Leu Gln Met Asn Asn Glu Pro Ala Glu 50 55 60Asp Leu Ser Trp Glu Arg Ala Val Asp Ile Leu Arg Glu Ala Glu Asp65 70 75 80Ser Leu Ser Ile Thr Val Val Arg Cys Thr Ser Gly Val Pro Lys Ser 85 90 95Ser Asn Ser Ser 1008993PRTHomo sapiens 89Gly Leu Arg Ser Pro Ile Thr Ile Gln Arg Ser Gly Lys Lys Tyr Gly1 5 10 15Phe Thr Leu Arg Ala Ile Arg Val Tyr Met Gly Asp Thr Asp Val Tyr 20 25 30Ser Val His His Ile Val Trp His Val Glu Glu Gly Gly Pro Ala Gln 35 40 45Glu Ala Gly Leu Cys Ala Gly Asp Leu Ile Thr His Val Asn Gly Glu 50 55 60Pro Val His Gly Met Val His Pro Glu Val Val Glu Leu Ile Leu Lys65 70 75 80Ser Gly Asn Lys Val Ala Val Thr Thr Thr Pro Phe Glu 85 9090107PRTHomo sapiens 90Gln Gly Glu Glu Thr Lys Ser Leu Thr Leu Val Leu His Arg Asp Ser1 5 10 15Gly Ser Leu Gly Phe Asn Ile Ile Gly Gly Arg Pro Ser Val Asp Asn 20 25 30His Asp Gly Ser Ser Ser Glu Gly Ile Phe Val Ser Lys Ile Val Asp 35 40 45Ser Gly Pro Ala Ala Lys Glu Gly Gly Leu Gln Ile His Asp Arg Ile 50 55 60Ile Glu Val Asn Gly Arg Asp Leu Ser Arg Ala Thr His Asp Gln Ala65 70 75 80Val Glu Ala Phe Lys Thr Ala Lys Glu Pro Ile Val Val Gln Val Leu 85 90 95Arg Arg Thr Pro Arg Thr Lys Met Phe Thr Pro 100 10591101PRTHomo sapiens 91Gln Glu Met Asp Arg Glu Glu Leu Glu Leu Glu Glu Val Asp Leu Tyr1 5 10 15Arg Met Asn Ser Gln Asp Lys Leu Gly Leu Thr Val Cys Tyr Arg Thr 20 25 30Asp Asp Glu Asp Asp Ile Gly Ile Tyr Ile Ser Glu Ile Asp Pro Asn 35 40 45Ser Ile Ala Ala Lys Asp Gly Arg Ile Arg Glu Gly Asp Arg Ile Ile 50 55 60Gln Ile Asn Gly Ile Glu Val Gln Asn Arg Glu Glu Ala Val Ala Leu65 70 75 80Leu Thr Ser Glu Glu Asn Lys Asn Phe Ser Leu Leu Ile Ala Arg Pro 85 90 95Glu Leu Gln Leu Asp 1009291PRTHomo sapiens 92Arg Ser Phe Gln Tyr Val Pro Val Gln Leu Gln Gly Gly Ala Pro Trp1 5 10 15Gly Phe Thr Leu Lys Gly Gly Leu Glu His Cys Glu Pro Leu Thr Val 20 25 30Ser Lys Ile Glu Asp Gly Gly Lys Ala Ala Leu Ser Gln Lys Met Arg 35 40 45Thr Gly Asp Glu Leu Val Asn Ile Asn Gly Thr Pro Leu Tyr Gly Ser 50 55 60Arg Gln Glu Ala Leu Ile Leu Ile Lys Gly Ser Phe Arg Ile Leu Lys65 70 75 80Leu Ile Val Arg Arg Arg Asn Ala Pro Val Ser 85 9093102PRTHomo sapiens 93Ile Leu Glu Lys Leu Glu Leu Phe Pro Val Glu Leu Glu Lys Asp Glu1 5 10 15Asp Gly Leu Gly Ile Ser Ile Ile Gly Met Gly Val Gly Ala Asp Ala 20 25 30Gly Leu Glu Lys Leu Gly Ile Phe Val Lys Thr Val Thr Glu Gly Gly 35 40 45Ala Ala Gln Arg Asp Gly Arg Ile Gln Val Asn Asp Gln Ile Val Glu 50 55 60Val Asp Gly Ile Ser Leu Val Gly Val Thr Gln Asn Phe Ala Ala Thr65 70 75 80Val Leu Arg Asn Thr Lys Gly Asn Val Arg Phe Val Ile Gly Arg Glu 85 90 95Lys Pro Gly Gln Val Ser 10094113PRTHomo sapiens 94Lys Asp Val Asn Val Tyr Val Asn Pro Lys Lys Leu Thr Val Ile Lys1 5 10 15Ala Lys Glu Gln Leu Lys Leu Leu Glu Val Leu Val Gly Ile Ile His 20 25 30Gln Thr Lys Trp Ser Trp Arg Arg Thr Gly Lys Gln Gly Asp Gly Glu 35 40 45Arg Leu Val Val His Gly Leu Leu Pro Gly Gly Ser Ala Met Lys Ser 50 55 60Gly Gln Val Leu Ile Gly Asp Val Leu Val Ala Val Asn Asp Val Asp65 70 75 80Val Thr Thr Glu Asn Ile Glu Arg Val Leu Ser Cys Ile Pro Gly Pro 85 90 95Met Gln Val Lys Leu Thr Phe Glu Asn Ala Tyr Asp Val Lys Arg Glu 100 105 110Thr9590PRTHomo sapiens 95Thr Arg Gly Cys Glu Thr Val Glu Met Thr Leu Arg Arg Asn Gly Leu1 5 10 15Gly Gln Leu Gly Phe His Val Asn Phe Glu Gly Ile Val Ala Asp Val 20 25 30Glu Pro Phe Gly Phe Ala Trp Lys Ala Gly Leu Arg Gln Gly Ser Arg 35 40 45Leu Val Glu Ile Cys Lys Val Ala Val Ala Thr Leu Thr His Glu Gln 50 55 60Met Ile Asp Leu Leu Arg Thr Ser Val Thr Val Lys Val Val Ile Ile65 70 75 80Gln Pro His Asp Asp Gly Ser Pro Arg Arg 85 909696PRTHomo sapiens 96Val Glu Asn Ile Leu Ala Lys Arg Leu Leu Ile Leu Pro Gln Glu Glu1 5 10 15Asp Tyr Gly Phe Asp Ile Glu Glu Lys Asn Lys Ala Val Val Val Lys 20 25 30Ser Val Gln Arg Gly Ser Leu Ala Glu Val Ala Gly Leu Gln Val Gly 35 40 45Arg Lys Ile Tyr Ser Ile Asn Glu Asp Leu Val Phe Leu Arg Pro Phe 50 55 60Ser Glu Val Glu Ser Ile Leu Asn Gln Ser Phe Cys Ser Arg Arg Pro65 70 75 80Leu Arg Leu Leu Val Ala Thr Lys Ala Lys Glu Ile Ile Lys Ile Pro 85 90 9597103PRTHomo sapiens 97Pro Asp Ser Ala Gly Pro Gly Glu Val Arg Leu Val Ser Leu Arg Arg1 5 10 15Ala Lys Ala His Glu Gly Leu Gly Phe Ser Ile Arg Gly Gly Ser Glu 20 25 30His Gly Val Gly Ile Tyr Val Ser Leu Val Glu Pro Gly Ser Leu Ala 35 40 45Glu Lys Glu Gly Leu Arg Val Gly Asp Gln Ile Leu Arg Val Asn Asp 50 55 60Lys Ser Leu Ala Arg Val Thr His Ala Glu Ala Val Lys Ala Leu Lys65 70 75 80Gly Ser Lys Lys Leu Val Leu Ser Val Tyr Ser Ala Gly Arg Ile Pro 85 90 95Gly Gly Tyr Val Thr Asn His 10098100PRTHomo sapiens 98Leu Gln Gly Gly Asp Glu Lys Lys Val Asn Leu Val Leu Gly Asp Gly1 5 10 15Arg Ser Leu Gly Leu Thr Ile Arg Gly Gly Ala Glu Tyr Gly Leu Gly 20 25 30Ile Tyr Ile Thr Gly Val Asp Pro Gly Ser Glu Ala Glu Gly Ser Gly 35 40 45Leu Lys Val Gly Asp Gln Ile Leu Glu Val Asn Trp Arg Ser Phe Leu 50 55 60Asn Ile Leu His Asp Glu Ala Val Arg Leu Leu Lys Ser Ser Arg His65 70 75 80Leu Ile Leu Thr Val Lys Asp Val Gly Arg Leu Pro His Ala Arg Thr 85 90 95Thr Val Asp Glu 1009987PRTHomo sapiens 99Trp Thr Ser Gly Ala His Val His Ser Gly Pro Cys Glu Glu Lys Cys1 5 10 15Gly His Pro Gly His Arg Gln Pro Leu Pro Arg Ile Val Thr Ile Gln 20 25 30Arg Gly Gly Ser Ala His Asn Cys Gly Gln Leu Lys Val Gly His Val 35 40 45Ile Leu Glu Val Asn Gly Leu Thr Leu Arg Gly Lys Glu His Arg Glu 50 55 60Ala Ala Arg Ile Ile Ala Glu Ala Phe Lys Thr Lys Asp Arg Asp Tyr65 70 75 80Ile Asp Phe Leu Asp Ser Leu 85100100PRTHomo sapiens 100Glu Leu Arg Arg Ala Glu Leu Val Glu Ile Ile Val Glu Thr Glu Ala1 5 10 15Gln Thr Gly Val Ser Gly Ile Asn Val Ala Gly Gly Gly Lys Glu Gly 20 25 30Ile Phe Val Arg Glu Leu Arg Glu Asp Ser Pro Ala Ala

Arg Ser Leu 35 40 45Ser Leu Gln Glu Gly Asp Gln Leu Leu Ser Ala Arg Val Phe Phe Glu 50 55 60Asn Phe Lys Tyr Glu Asp Ala Leu Arg Leu Leu Gln Cys Ala Glu Pro65 70 75 80Tyr Lys Val Ser Phe Cys Leu Lys Arg Thr Val Pro Thr Gly Asp Leu 85 90 95Ala Leu Arg Pro 100101102PRTHomo sapiens 101Pro Ser Gln Leu Lys Gly Val Leu Val Arg Ala Ser Leu Lys Lys Ser1 5 10 15Thr Met Gly Phe Gly Phe Thr Ile Ile Gly Gly Asp Arg Pro Asp Glu 20 25 30Phe Leu Gln Val Lys Asn Val Leu Lys Asp Gly Pro Ala Ala Gln Asp 35 40 45Gly Lys Ile Ala Pro Gly Asp Val Ile Val Asp Ile Asn Gly Asn Cys 50 55 60Val Leu Gly His Thr His Ala Asp Val Val Gln Met Phe Gln Leu Val65 70 75 80Pro Val Asn Gln Tyr Val Asn Leu Thr Leu Cys Arg Gly Tyr Pro Leu 85 90 95Pro Asp Asp Ser Glu Asp 100102100PRTHomo sapiens 102Ala Ser Ser Gly Ser Ser Gln Pro Glu Leu Val Thr Ile Pro Leu Ile1 5 10 15Lys Gly Pro Lys Gly Phe Gly Phe Ala Ile Ala Asp Ser Pro Thr Gly 20 25 30Gln Lys Val Lys Met Ile Leu Asp Ser Gln Trp Cys Gln Gly Leu Gln 35 40 45Lys Gly Asp Ile Ile Lys Glu Ile Tyr His Gln Asn Val Gln Asn Leu 50 55 60Thr His Leu Gln Val Val Glu Val Leu Lys Gln Phe Pro Val Gly Ala65 70 75 80Asp Val Pro Leu Leu Ile Leu Arg Gly Gly Pro Pro Ser Pro Thr Lys 85 90 95Thr Ala Lys Met 100103143PRTHomo sapiens 103Leu Tyr Glu Asp Lys Pro Pro Leu Thr Asn Thr Phe Leu Ile Ser Asn1 5 10 15Pro Arg Thr Thr Ala Asp Pro Arg Ile Leu Tyr Glu Asp Lys Pro Pro 20 25 30Asn Thr Lys Asp Leu Asp Val Phe Leu Arg Lys Gln Glu Ser Gly Phe 35 40 45Gly Phe Arg Val Leu Gly Gly Asp Gly Pro Asp Gln Ser Ile Tyr Ile 50 55 60Gly Ala Ile Ile Pro Leu Gly Ala Ala Glu Lys Asp Gly Arg Leu Arg65 70 75 80Ala Ala Asp Glu Leu Met Cys Ile Asp Gly Ile Pro Val Lys Gly Lys 85 90 95Ser His Lys Gln Val Leu Asp Leu Met Thr Thr Ala Ala Arg Asn Gly 100 105 110His Val Leu Leu Thr Val Arg Arg Lys Ile Phe Tyr Gly Glu Lys Gln 115 120 125Pro Glu Asp Asp Ser Gly Ser Pro Gly Ile His Arg Glu Leu Thr 130 135 140104102PRTHomo sapiens 104Pro Ala Pro Gln Glu Pro Tyr Asp Val Val Leu Gln Arg Lys Glu Asn1 5 10 15Glu Gly Phe Gly Phe Val Ile Leu Thr Ser Lys Asn Lys Pro Pro Pro 20 25 30Gly Val Ile Pro His Lys Ile Gly Arg Val Ile Glu Gly Ser Pro Ala 35 40 45Asp Arg Cys Gly Lys Leu Lys Val Gly Asp His Ile Ser Ala Val Asn 50 55 60Gly Gln Ser Ile Val Glu Leu Ser His Asp Asn Ile Val Gln Leu Ile65 70 75 80Lys Asp Ala Gly Val Thr Val Thr Leu Thr Val Ile Ala Glu Glu Glu 85 90 95His His Gly Pro Pro Ser 10010598PRTHomo sapiens 105Gln Asn Leu Gly Cys Tyr Pro Val Glu Leu Glu Arg Gly Pro Arg Gly1 5 10 15Phe Gly Phe Ser Leu Arg Gly Gly Lys Glu Tyr Asn Met Gly Leu Phe 20 25 30Ile Leu Arg Leu Ala Glu Asp Gly Pro Ala Ile Lys Asp Gly Arg Ile 35 40 45His Val Gly Asp Gln Ile Val Glu Ile Asn Gly Glu Pro Thr Gln Gly 50 55 60Ile Thr His Thr Arg Ala Ile Glu Leu Ile Gln Ala Gly Gly Asn Lys65 70 75 80Val Leu Leu Leu Leu Arg Pro Gly Thr Gly Leu Ile Pro Asp His Gly 85 90 95Leu Ala10684PRTHomo sapiens 106Ile Thr Val Val Glu Leu Ile Lys Lys Glu Gly Ser Thr Leu Gly Leu1 5 10 15Thr Ile Ser Gly Gly Thr Asp Lys Asp Gly Lys Pro Arg Val Ser Asn 20 25 30Leu Arg Pro Gly Gly Leu Ala Ala Arg Ser Asp Leu Leu Asn Ile Gly 35 40 45Asp Tyr Ile Arg Ser Val Asn Gly Ile His Leu Thr Arg Leu Arg His 50 55 60Asp Glu Ile Ile Thr Leu Leu Lys Asn Val Gly Glu Arg Val Val Leu65 70 75 80Glu Val Glu Tyr10792PRTHomo sapiens 107Ile Leu Asp Val Ser Leu Tyr Lys Glu Gly Asn Ser Phe Gly Phe Val1 5 10 15Leu Arg Gly Gly Ala His Glu Asp Gly His Lys Ser Arg Pro Leu Val 20 25 30Leu Thr Tyr Val Arg Pro Gly Gly Pro Ala Asp Arg Glu Gly Ser Leu 35 40 45Lys Val Gly Asp Arg Leu Leu Ser Val Asp Gly Ile Pro Leu His Gly 50 55 60Ala Ser His Ala Thr Ala Leu Ala Thr Leu Arg Gln Cys Ser His Glu65 70 75 80Ala Leu Phe Gln Val Glu Tyr Asp Val Ala Thr Pro 85 90108102PRTHomo sapiens 108Ile His Thr Val Ala Asn Ala Ser Gly Pro Leu Met Val Glu Ile Val1 5 10 15Lys Thr Pro Gly Ser Ala Leu Gly Ile Ser Leu Thr Thr Thr Ser Leu 20 25 30Arg Asn Lys Ser Val Ile Thr Ile Asp Arg Ile Lys Pro Ala Ser Val 35 40 45Val Asp Arg Ser Gly Ala Leu His Pro Gly Asp His Ile Leu Ser Ile 50 55 60Asp Gly Thr Ser Met Glu His Cys Ser Leu Leu Glu Ala Thr Lys Leu65 70 75 80Leu Ala Ser Ile Ser Glu Lys Val Arg Leu Glu Ile Leu Pro Val Pro 85 90 95Gln Ser Gln Arg Pro Leu 100109103PRTHomo sapiens 109Ile Gln Ile Val His Thr Glu Thr Thr Glu Val Val Leu Cys Gly Asp1 5 10 15Pro Leu Ser Gly Phe Gly Leu Gln Leu Gln Gly Gly Ile Phe Ala Thr 20 25 30Glu Thr Leu Ser Ser Pro Pro Leu Val Cys Phe Ile Glu Pro Asp Ser 35 40 45Pro Ala Glu Arg Cys Gly Leu Leu Gln Val Gly Asp Arg Val Leu Ser 50 55 60Ile Asn Gly Ile Ala Thr Glu Asp Gly Thr Met Glu Glu Ala Asn Gln65 70 75 80Leu Leu Arg Asp Ala Ala Leu Ala His Lys Val Val Leu Glu Val Glu 85 90 95Phe Asp Val Ala Glu Ser Val 100110103PRTHomo sapiens 110Ile Gln Phe Asp Val Ala Glu Ser Val Ile Pro Ser Ser Gly Thr Phe1 5 10 15His Val Lys Leu Pro Lys Lys Arg Ser Val Glu Leu Gly Ile Thr Ile 20 25 30Ser Ser Ala Ser Arg Lys Arg Gly Glu Pro Leu Ile Ile Ser Asp Ile 35 40 45Lys Lys Gly Ser Val Ala His Arg Thr Gly Thr Leu Glu Pro Gly Asp 50 55 60Lys Leu Leu Ala Ile Asp Asn Ile Arg Leu Asp Asn Cys Pro Met Glu65 70 75 80Asp Ala Val Gln Ile Leu Arg Gln Cys Glu Asp Leu Val Lys Leu Lys 85 90 95Ile Arg Lys Asp Glu Asp Asn 10011194PRTHomo sapiens 111Ile Gln Thr Thr Gly Ala Val Ser Tyr Thr Val Glu Leu Lys Arg Tyr1 5 10 15Gly Gly Pro Leu Gly Ile Thr Ile Ser Gly Thr Glu Glu Pro Phe Asp 20 25 30Pro Ile Val Ile Ser Gly Leu Thr Lys Arg Gly Leu Ala Glu Arg Thr 35 40 45Gly Ala Ile His Val Gly Asp Arg Ile Leu Ala Ile Asn Asn Val Ser 50 55 60Leu Lys Gly Arg Pro Leu Ser Glu Ala Ile His Leu Leu Gln Val Ala65 70 75 80Gly Glu Thr Val Thr Leu Lys Ile Lys Lys Gln Leu Asp Arg 85 90112105PRTHomo sapiens 112Ile Leu Glu Met Glu Glu Leu Leu Leu Pro Thr Pro Leu Glu Met His1 5 10 15Lys Val Thr Leu His Lys Asp Pro Met Arg His Asp Phe Gly Phe Ser 20 25 30Val Ser Asp Gly Leu Leu Glu Lys Gly Val Tyr Val His Thr Val Arg 35 40 45Pro Asp Gly Pro Ala His Arg Gly Gly Leu Gln Pro Phe Asp Arg Val 50 55 60Leu Gln Val Asn His Val Arg Thr Arg Asp Phe Asp Cys Cys Leu Ala65 70 75 80Val Pro Leu Leu Ala Glu Ala Gly Asp Val Leu Glu Leu Ile Ile Ser 85 90 95Arg Lys Pro His Thr Ala His Ser Ser 100 10511391PRTHomo sapiens 113Met Ala Leu Thr Val Asp Val Ala Gly Pro Ala Pro Trp Gly Phe Arg1 5 10 15Ile Thr Gly Gly Arg Asp Phe His Thr Pro Ile Met Val Thr Lys Val 20 25 30Ala Glu Arg Gly Lys Ala Lys Asp Ala Asp Leu Arg Pro Gly Asp Ile 35 40 45Ile Val Ala Ile Asn Gly Glu Ser Ala Glu Gly Met Leu His Ala Glu 50 55 60Ala Gln Ser Lys Ile Arg Gln Ser Pro Ser Pro Leu Arg Leu Gln Leu65 70 75 80Asp Arg Ser Gln Ala Thr Ser Pro Gly Gln Thr 85 9011484PRTHomo sapiens 114Ser Asn Tyr Ser Val Ser Leu Val Gly Pro Ala Pro Trp Gly Phe Arg1 5 10 15Leu Gln Gly Gly Lys Asp Phe Asn Met Pro Leu Thr Ile Ser Ser Leu 20 25 30Lys Asp Gly Gly Lys Ala Ala Gln Ala Asn Val Arg Ile Gly Asp Val 35 40 45Val Leu Ser Ile Asp Gly Ile Asn Ala Gln Gly Met Thr His Leu Glu 50 55 60Ala Gln Asn Lys Ile Lys Gly Cys Thr Gly Ser Leu Asn Met Thr Leu65 70 75 80Gln Arg Ala Ser115133PRTHomo sapiens 115Thr Leu Val Glu His Ser Lys Leu Tyr Cys Gly His Cys Tyr Tyr Gln1 5 10 15Thr Val Val Thr Pro Val Ile Glu Gln Ile Leu Pro Asp Ser Pro Gly 20 25 30Ser His Leu Pro His Thr Val Thr Leu Val Ser Ile Pro Ala Ser Ser 35 40 45His Gly Lys Arg Gly Leu Ser Val Ser Ile Asp Pro Pro His Gly Pro 50 55 60Pro Gly Cys Gly Thr Glu His Ser His Thr Val Arg Val Gln Gly Val65 70 75 80Asp Pro Gly Cys Met Ser Pro Asp Val Lys Asn Ser Ile His Val Gly 85 90 95Asp Arg Ile Leu Glu Ile Asn Gly Thr Pro Ile Arg Asn Val Pro Leu 100 105 110Asp Glu Ile Asp Leu Leu Ile Gln Glu Thr Ser Arg Leu Leu Gln Leu 115 120 125Thr Leu Glu His Asp 13011692PRTHomo sapiens 116Pro Tyr Ser Val Thr Leu Ile Ser Met Pro Ala Thr Thr Glu Gly Arg1 5 10 15Arg Gly Phe Ser Val Ser Val Glu Ser Ala Cys Ser Asn Tyr Ala Thr 20 25 30Thr Val Gln Val Lys Glu Val Asn Arg Met His Ile Ser Pro Asn Asn 35 40 45Arg Asn Ala Ile His Pro Gly Asp Arg Ile Leu Glu Ile Asn Gly Thr 50 55 60Pro Val Arg Thr Leu Arg Val Glu Glu Val Glu Asp Ala Ile Ser Gln65 70 75 80Thr Ser Gln Thr Leu Gln Leu Leu Ile Glu His Asp 85 9011782PRTHomo sapiens 117Ile His Ser Val Thr Leu Arg Gly Pro Ser Pro Trp Gly Phe Arg Leu1 5 10 15Val Gly Arg Asp Phe Ser Ala Pro Leu Thr Ile Ser Arg Val His Ala 20 25 30Gly Ser Lys Ala Ser Leu Ala Ala Leu Cys Pro Gly Asp Leu Ile Gln 35 40 45Ala Ile Asn Gly Glu Ser Thr Glu Leu Met Thr His Leu Glu Ala Gln 50 55 60Asn Arg Ile Lys Gly Cys His Asp His Leu Thr Leu Ser Val Ser Arg65 70 75 80Pro Glu11874PRTHomo sapiens 118Val Cys Tyr Arg Thr Asp Asp Glu Glu Asp Leu Gly Ile Tyr Val Gly1 5 10 15Glu Val Asn Pro Asn Ser Ile Ala Ala Lys Asp Gly Arg Ile Arg Glu 20 25 30Gly Asp Arg Ile Ile Gln Ile Asn Gly Val Asp Val Gln Asn Arg Glu 35 40 45Glu Ala Val Ala Ile Leu Ser Gln Glu Glu Asn Thr Asn Ile Ser Leu 50 55 60Leu Val Ala Arg Pro Glu Ser Gln Leu Ala65 70119103PRTHomo sapiens 119Ile Gln Lys Lys Asn His Trp Thr Ser Arg Val His Glu Cys Thr Val1 5 10 15Lys Arg Gly Pro Gln Gly Glu Leu Gly Val Thr Val Leu Gly Gly Ala 20 25 30Glu His Gly Glu Phe Pro Tyr Val Gly Ala Val Ala Ala Val Glu Ala 35 40 45Ala Gly Leu Pro Gly Gly Gly Glu Gly Pro Arg Leu Gly Glu Gly Glu 50 55 60Leu Leu Leu Glu Val Gln Gly Val Arg Val Ser Gly Leu Pro Arg Tyr65 70 75 80Asp Val Leu Gly Val Ile Asp Ser Cys Lys Glu Ala Val Thr Phe Lys 85 90 95Ala Val Arg Gln Gly Gly Arg 100120104PRTHomo sapiens 120Pro Ser Glu Leu Lys Gly Lys Phe Ile His Thr Lys Leu Arg Lys Ser1 5 10 15Ser Arg Gly Phe Gly Phe Thr Val Val Gly Gly Asp Glu Pro Asp Glu 20 25 30Phe Leu Gln Ile Lys Ser Leu Val Leu Asp Gly Pro Ala Ala Leu Asp 35 40 45Gly Lys Met Glu Thr Gly Asp Val Ile Val Ser Val Asn Asp Thr Cys 50 55 60Val Leu Gly His Thr His Ala Gln Val Val Lys Ile Phe Gln Ser Ile65 70 75 80Pro Ile Gly Ala Ser Val Asp Leu Glu Leu Cys Arg Gly Tyr Pro Leu 85 90 95Pro Phe Asp Pro Asp Asp Pro Asn 10012192PRTHomo sapiens 121Pro Ala Thr Gln Pro Glu Leu Ile Thr Val His Ile Val Lys Gly Pro1 5 10 15Met Gly Phe Gly Phe Thr Ile Ala Asp Ser Pro Gly Gly Gly Gly Gln 20 25 30Arg Val Lys Gln Ile Val Asp Ser Pro Arg Cys Arg Gly Leu Lys Glu 35 40 45Gly Asp Leu Ile Val Glu Val Asn Lys Lys Asn Val Gln Ala Leu Thr 50 55 60His Asn Gln Val Val Asp Met Leu Val Glu Cys Pro Lys Gly Ser Glu65 70 75 80Val Thr Leu Leu Val Gln Arg Gly Gly Asn Leu Ser 85 90122102PRTHomo sapiens 122Pro Asp Tyr Gln Glu Gln Asp Ile Phe Leu Trp Arg Lys Glu Thr Gly1 5 10 15Phe Gly Phe Arg Ile Leu Gly Gly Asn Glu Pro Gly Glu Pro Ile Tyr 20 25 30Ile Gly His Ile Val Pro Leu Gly Ala Ala Asp Thr Asp Gly Arg Leu 35 40 45Arg Ser Gly Asp Glu Leu Ile Cys Val Asp Gly Thr Pro Val Ile Gly 50 55 60Lys Ser His Gln Leu Val Val Gln Leu Met Gln Gln Ala Ala Lys Gln65 70 75 80Gly His Val Asn Leu Thr Val Arg Arg Lys Val Val Phe Ala Val Pro 85 90 95Lys Thr Glu Asn Ser Ser 100123112PRTHomo sapiens 123Gly Val Val Ser Thr Val Val Gln Pro Tyr Asp Val Glu Ile Arg Arg1 5 10 15Gly Glu Asn Glu Gly Phe Gly Phe Val Ile Val Ser Ser Val Ser Arg 20 25 30Pro Glu Ala Gly Thr Thr Phe Ala Gly Asn Ala Cys Val Ala Met Pro 35 40 45His Lys Ile Gly Arg Ile Ile Glu Gly Ser Pro Ala Asp Arg Cys Gly 50 55 60Lys Leu Lys Val Gly Asp Arg Ile Leu Ala Val Asn Gly Cys Ser Ile65 70 75 80Thr Asn Lys Ser His Ser Asp Ile Val Asn Leu Ile Lys Glu Ala Gly 85 90 95Asn Thr Val Thr Leu Arg Ile Ile Pro Gly Asp Glu Ser Ser Asn Ala 100 105 11012491PRTHomo sapiens 124Gln Ala Thr Gln Glu Gln Asp Phe Tyr Thr Val Glu Leu Glu Arg Gly1 5 10 15Ala Lys Gly Phe Gly Phe Ser Leu Arg Gly Gly Arg Glu Tyr Asn Met 20 25 30Asp Leu Tyr Val Leu Arg Leu Ala Glu Asp Gly Pro Ala Glu Arg Cys 35 40 45Gly Lys Met Arg Ile Gly Asp Glu Ile Leu Glu Ile Asn Gly Glu Thr 50 55 60Thr Lys Asn Met Lys His Ser Arg Ala Ile Glu Leu Ile Lys Asn Gly65

70 75 80Gly Arg Arg Val Arg Leu Phe Leu Lys Arg Gly 85 90125100PRTHomo sapiens 125Pro Ala Lys Met Glu Lys Glu Glu Thr Thr Arg Glu Leu Leu Leu Pro1 5 10 15Asn Trp Gln Gly Ser Gly Ser His Gly Leu Thr Ile Ala Gln Arg Asp 20 25 30Asp Gly Val Phe Val Gln Glu Val Thr Gln Asn Ser Pro Ala Ala Arg 35 40 45Thr Gly Val Val Lys Glu Gly Asp Gln Ile Val Gly Ala Thr Ile Tyr 50 55 60Phe Asp Asn Leu Gln Ser Gly Glu Val Thr Gln Leu Leu Asn Thr Met65 70 75 80Gly His His Thr Val Gly Leu Lys Leu His Arg Lys Gly Asp Arg Ser 85 90 95Pro Asn Ser Ser 10012698PRTHomo sapiens 126Ser Glu Asn Cys Lys Asp Val Phe Ile Glu Lys Gln Lys Gly Glu Ile1 5 10 15Leu Gly Val Val Ile Val Glu Ser Gly Trp Gly Ser Ile Leu Pro Thr 20 25 30Val Ile Ile Ala Asn Met Met His Gly Gly Pro Ala Glu Lys Ser Gly 35 40 45Lys Leu Asn Ile Gly Asp Gln Ile Met Ser Ile Asn Gly Thr Ser Leu 50 55 60Val Gly Leu Pro Leu Ser Thr Cys Gln Ser Ile Ile Lys Gly Leu Lys65 70 75 80Asn Gln Ser Arg Val Lys Leu Asn Ile Val Arg Cys Pro Pro Val Asn 85 90 95Ser Ser12792PRTHomo sapiens 127Leu Arg Cys Pro Pro Val Thr Thr Val Leu Ile Arg Arg Pro Asp Leu1 5 10 15Arg Tyr Gln Leu Gly Phe Ser Val Gln Asn Gly Ile Ile Cys Ser Leu 20 25 30Met Arg Gly Gly Ile Ala Glu Arg Gly Gly Val Arg Val Gly His Arg 35 40 45Ile Ile Glu Ile Asn Gly Gln Ser Val Val Ala Thr Pro His Glu Lys 50 55 60Ile Val His Ile Leu Ser Asn Ala Val Gly Glu Ile His Met Lys Thr65 70 75 80Met Pro Ala Ala Met Tyr Arg Leu Leu Asn Ser Ser 85 90128103PRTHomo sapiens 128Leu Ser Asn Ser Asp Asn Cys Arg Glu Val His Leu Glu Lys Arg Arg1 5 10 15Gly Glu Gly Leu Gly Val Ala Leu Val Glu Ser Gly Trp Gly Ser Leu 20 25 30Leu Pro Thr Ala Val Ile Ala Asn Leu Leu His Gly Gly Pro Ala Glu 35 40 45Arg Ser Gly Ala Leu Ser Ile Gly Asp Arg Leu Thr Ala Ile Asn Gly 50 55 60Thr Ser Leu Val Gly Leu Pro Leu Ala Ala Cys Gln Ala Ala Val Arg65 70 75 80Glu Thr Lys Ser Gln Thr Ser Val Thr Leu Ser Ile Val His Cys Pro 85 90 95Pro Val Thr Thr Ala Ile Met 10012992PRTHomo sapiens 129Leu Val His Cys Pro Pro Val Thr Thr Ala Ile Ile His Arg Pro His1 5 10 15Ala Arg Glu Gln Leu Gly Phe Cys Val Glu Asp Gly Ile Ile Cys Ser 20 25 30Leu Leu Arg Gly Gly Ile Ala Glu Arg Gly Gly Ile Arg Val Gly His 35 40 45Arg Ile Ile Glu Ile Asn Gly Gln Ser Val Val Ala Thr Pro His Ala 50 55 60Arg Ile Ile Glu Leu Leu Thr Glu Ala Tyr Gly Glu Val His Ile Lys65 70 75 80Thr Met Pro Ala Ala Thr Tyr Arg Leu Leu Thr Gly 85 9013086PRTHomo sapiens 130Arg Lys Val Arg Leu Ile Gln Phe Glu Lys Val Thr Glu Glu Pro Met1 5 10 15Gly Ile Thr Leu Lys Leu Asn Glu Lys Gln Ser Cys Thr Val Ala Arg 20 25 30Ile Leu His Gly Gly Met Ile His Arg Gln Gly Ser Leu His Val Gly 35 40 45Asp Glu Ile Leu Glu Ile Asn Gly Thr Asn Val Thr Asn His Ser Val 50 55 60Asp Gln Leu Gln Lys Ala Met Lys Glu Thr Lys Gly Met Ile Ser Leu65 70 75 80Lys Val Ile Pro Asn Gln 8513189PRTHomo sapiens 131Pro Val Pro Pro Asp Ala Val Arg Met Val Gly Ile Arg Lys Thr Ala1 5 10 15Gly Glu His Leu Gly Val Thr Phe Arg Val Glu Gly Gly Glu Leu Val 20 25 30Ile Ala Arg Ile Leu His Gly Gly Met Val Ala Gln Gln Gly Leu Leu 35 40 45His Val Gly Asp Ile Ile Lys Glu Val Asn Gly Gln Pro Val Gly Ser 50 55 60Asp Pro Arg Ala Leu Gln Glu Leu Leu Arg Asn Ala Ser Gly Ser Val65 70 75 80Ile Leu Lys Ile Leu Pro Asn Tyr Gln 8513299PRTHomo sapiens 132Gln Gly Arg His Val Glu Val Phe Glu Leu Leu Lys Pro Pro Ser Gly1 5 10 15Gly Leu Gly Phe Ser Val Val Gly Leu Arg Ser Glu Asn Arg Gly Glu 20 25 30Leu Gly Ile Phe Val Gln Glu Ile Gln Glu Gly Ser Val Ala His Arg 35 40 45Asp Gly Arg Leu Lys Glu Thr Asp Gln Ile Leu Ala Ile Asn Gly Gln 50 55 60Ala Leu Asp Gln Thr Ile Thr His Gln Gln Ala Ile Ser Ile Leu Gln65 70 75 80Lys Ala Lys Asp Thr Val Gln Leu Val Ile Ala Arg Gly Ser Leu Pro 85 90 95Gln Leu Val13397PRTHomo sapiens 133Pro Val His Trp Gln His Met Glu Thr Ile Glu Leu Val Asn Asp Gly1 5 10 15Ser Gly Leu Gly Phe Gly Ile Ile Gly Gly Lys Ala Thr Gly Val Ile 20 25 30Val Lys Thr Ile Leu Pro Gly Gly Val Ala Asp Gln His Gly Arg Leu 35 40 45Cys Ser Gly Asp His Ile Leu Lys Ile Gly Asp Thr Asp Leu Ala Gly 50 55 60Met Ser Ser Glu Gln Val Ala Gln Val Leu Arg Gln Cys Gly Asn Arg65 70 75 80Val Lys Leu Met Ile Ala Arg Gly Ala Ile Glu Glu Arg Thr Ala Pro 85 90 95Thr13498PRTHomo sapiens 134Gln Glu Ser Glu Thr Phe Asp Val Glu Leu Thr Lys Asn Val Gln Gly1 5 10 15Leu Gly Ile Thr Ile Ala Gly Tyr Ile Gly Asp Lys Lys Leu Glu Pro 20 25 30Ser Gly Ile Phe Val Lys Ser Ile Thr Lys Ser Ser Ala Val Glu His 35 40 45Asp Gly Arg Ile Gln Ile Gly Asp Gln Ile Ile Ala Val Asp Gly Thr 50 55 60Asn Leu Gln Gly Phe Thr Asn Gln Gln Ala Val Glu Val Leu Arg His65 70 75 80Thr Gly Gln Thr Val Leu Leu Thr Leu Met Arg Arg Gly Met Lys Gln 85 90 95Glu Ala13592PRTHomo sapiens 135Leu Asn Tyr Glu Ile Val Val Ala His Val Ser Lys Phe Ser Glu Asn1 5 10 15Ser Gly Leu Gly Ile Ser Leu Glu Ala Thr Val Gly His His Phe Ile 20 25 30Arg Ser Val Leu Pro Glu Gly Pro Val Gly His Ser Gly Lys Leu Phe 35 40 45Ser Gly Asp Glu Leu Leu Glu Val Asn Gly Ile Thr Leu Leu Gly Glu 50 55 60Asn His Gln Asp Val Val Asn Ile Leu Lys Glu Leu Pro Ile Glu Val65 70 75 80Thr Met Val Cys Cys Arg Arg Thr Val Pro Pro Thr 85 90136100PRTHomo sapiens 136Trp Glu Ala Gly Ile Gln His Ile Glu Leu Glu Lys Gly Ser Lys Gly1 5 10 15Leu Gly Phe Ser Ile Leu Asp Tyr Gln Asp Pro Ile Asp Pro Ala Ser 20 25 30Thr Val Ile Ile Ile Arg Ser Leu Val Pro Gly Gly Ile Ala Glu Lys 35 40 45Asp Gly Arg Leu Leu Pro Gly Asp Arg Leu Met Phe Val Asn Asp Val 50 55 60Asn Leu Glu Asn Ser Ser Leu Glu Glu Ala Val Glu Ala Leu Lys Gly65 70 75 80Ala Pro Ser Gly Thr Val Arg Ile Gly Val Ala Lys Pro Leu Pro Leu 85 90 95Ser Pro Glu Glu 10013799PRTHomo sapiens 137Arg Asn Val Ser Lys Glu Ser Phe Glu Arg Thr Ile Asn Ile Ala Lys1 5 10 15Gly Asn Ser Ser Leu Gly Met Thr Val Ser Ala Asn Lys Asp Gly Leu 20 25 30Gly Met Ile Val Arg Ser Ile Ile His Gly Gly Ala Ile Ser Arg Asp 35 40 45Gly Arg Ile Ala Ile Gly Asp Cys Ile Leu Ser Ile Asn Glu Glu Ser 50 55 60Thr Ile Ser Val Thr Asn Ala Gln Ala Arg Ala Met Leu Arg Arg His65 70 75 80Ser Leu Ile Gly Pro Asp Ile Lys Ile Thr Tyr Val Pro Ala Glu His 85 90 95Leu Glu Glu138112PRTHomo sapiens 138Leu Asn Trp Asn Gln Pro Arg Arg Val Glu Leu Trp Arg Glu Pro Ser1 5 10 15Lys Ser Leu Gly Ile Ser Ile Val Gly Gly Arg Gly Met Gly Ser Arg 20 25 30Leu Ser Asn Gly Glu Val Met Arg Gly Ile Phe Ile Lys His Val Leu 35 40 45Glu Asp Ser Pro Ala Gly Lys Asn Gly Thr Leu Lys Pro Gly Asp Arg 50 55 60Ile Val Glu Val Asp Gly Met Asp Leu Arg Asp Ala Ser His Glu Gln65 70 75 80Ala Val Glu Ala Ile Arg Lys Ala Gly Asn Pro Val Val Phe Met Val 85 90 95Gln Ser Ile Ile Asn Arg Pro Arg Lys Ser Pro Leu Pro Ser Leu Leu 100 105 11013995PRTHomo sapiens 139Leu Thr Gly Glu Leu His Met Ile Glu Leu Glu Lys Gly His Ser Gly1 5 10 15Leu Gly Leu Ser Leu Ala Gly Asn Lys Asp Arg Ser Arg Met Ser Val 20 25 30Phe Ile Val Gly Ile Asp Pro Asn Gly Ala Ala Gly Lys Asp Gly Arg 35 40 45Leu Gln Ile Ala Asp Glu Leu Leu Glu Ile Asn Gly Gln Ile Leu Tyr 50 55 60Gly Arg Ser His Gln Asn Ala Ser Ser Ile Ile Lys Cys Ala Pro Ser65 70 75 80Lys Val Lys Ile Ile Phe Ile Arg Asn Lys Asp Ala Val Asn Gln 85 90 9514094PRTHomo sapiens 140Leu Ser Ser Phe Lys Asn Val Gln His Leu Glu Leu Pro Lys Asp Gln1 5 10 15Gly Gly Leu Gly Ile Ala Ile Ser Glu Glu Asp Thr Leu Ser Gly Val 20 25 30Ile Ile Lys Ser Leu Thr Glu His Gly Val Ala Ala Thr Asp Gly Arg 35 40 45Leu Lys Val Gly Asp Gln Ile Leu Ala Val Asp Asp Glu Ile Val Val 50 55 60Gly Tyr Pro Ile Glu Lys Phe Ile Ser Leu Leu Lys Thr Ala Lys Met65 70 75 80Thr Val Lys Leu Thr Ile His Ala Glu Asn Pro Asp Ser Gln 85 9014195PRTHomo sapiens 141Leu Pro Gly Cys Glu Thr Thr Ile Glu Ile Ser Lys Gly Arg Thr Gly1 5 10 15Leu Gly Leu Ser Ile Val Gly Gly Ser Asp Thr Leu Leu Gly Ala Ile 20 25 30Ile Ile His Glu Val Tyr Glu Glu Gly Ala Ala Cys Lys Asp Gly Arg 35 40 45Leu Trp Ala Gly Asp Gln Ile Leu Glu Val Asn Gly Ile Asp Leu Arg 50 55 60Lys Ala Thr His Asp Glu Ala Ile Asn Val Leu Arg Gln Thr Pro Gln65 70 75 80Arg Val Arg Leu Thr Leu Tyr Arg Asp Glu Ala Pro Tyr Lys Glu 85 90 9514298PRTHomo sapiens 142Lys Glu Glu Glu Val Cys Asp Thr Leu Thr Ile Glu Leu Gln Lys Lys1 5 10 15Pro Gly Lys Gly Leu Gly Leu Ser Ile Val Gly Lys Arg Asn Asp Thr 20 25 30Gly Val Phe Val Ser Asp Ile Val Lys Gly Gly Ile Ala Asp Ala Asp 35 40 45Gly Arg Leu Met Gln Gly Asp Gln Ile Leu Met Val Asn Gly Glu Asp 50 55 60Val Arg Asn Ala Thr Gln Glu Ala Val Ala Ala Leu Leu Lys Cys Ser65 70 75 80Leu Gly Thr Val Thr Leu Glu Val Gly Arg Ile Lys Ala Gly Pro Phe 85 90 95His Ser14396PRTHomo sapiens 143Leu Gln Gly Leu Arg Thr Val Glu Met Lys Lys Gly Pro Thr Asp Ser1 5 10 15Leu Gly Ile Ser Ile Ala Gly Gly Val Gly Ser Pro Leu Gly Asp Val 20 25 30Pro Ile Phe Ile Ala Met Met His Pro Thr Gly Val Ala Ala Gln Thr 35 40 45Gln Lys Leu Arg Val Gly Asp Arg Ile Val Thr Ile Cys Gly Thr Ser 50 55 60Thr Glu Gly Met Thr His Thr Gln Ala Val Asn Leu Leu Lys Asn Ala65 70 75 80Ser Gly Ser Ile Glu Met Gln Val Val Ala Gly Gly Asp Val Ser Val 85 90 9514491PRTHomo sapiens 144Leu Gly Pro Pro Gln Cys Lys Ser Ile Thr Leu Glu Arg Gly Pro Asp1 5 10 15Gly Leu Gly Phe Ser Ile Val Gly Gly Tyr Gly Ser Pro His Gly Asp 20 25 30Leu Pro Ile Tyr Val Lys Thr Val Phe Ala Lys Gly Ala Ala Ser Glu 35 40 45Asp Gly Arg Leu Lys Arg Gly Asp Gln Ile Ile Ala Val Asn Gly Gln 50 55 60Ser Leu Glu Gly Val Thr His Glu Glu Ala Val Ala Ile Leu Lys Arg65 70 75 80Thr Lys Gly Thr Val Thr Leu Met Val Leu Ser 85 9014593PRTHomo sapiens 145Ile Gln Tyr Glu Glu Ile Val Leu Glu Arg Gly Asn Ser Gly Leu Gly1 5 10 15Phe Ser Ile Ala Gly Gly Ile Asp Asn Pro His Val Pro Asp Asp Pro 20 25 30Gly Ile Phe Ile Thr Lys Ile Ile Pro Gly Gly Ala Ala Ala Met Asp 35 40 45Gly Arg Leu Gly Val Asn Asp Cys Val Leu Arg Val Asn Glu Val Glu 50 55 60Val Ser Glu Val Val His Ser Arg Ala Val Glu Ala Leu Lys Glu Ala65 70 75 80Gly Pro Val Val Arg Leu Val Val Arg Arg Arg Gln Asn 85 9014690PRTHomo sapiens 146Ile Thr Leu Leu Lys Gly Pro Lys Gly Leu Gly Phe Ser Ile Ala Gly1 5 10 15Gly Ile Gly Asn Gln His Ile Pro Gly Asp Asn Ser Ile Tyr Ile Thr 20 25 30Lys Ile Ile Glu Gly Gly Ala Ala Gln Lys Asp Gly Arg Leu Gln Ile 35 40 45Gly Asp Arg Leu Leu Ala Val Asn Asn Thr Asn Leu Gln Asp Val Arg 50 55 60His Glu Glu Ala Val Ala Ser Leu Lys Asn Thr Ser Asp Met Val Tyr65 70 75 80Leu Lys Val Ala Lys Pro Gly Ser Leu Glu 85 90147119PRTHomo sapiens 147Ile Leu Leu His Lys Gly Ser Thr Gly Leu Gly Phe Asn Ile Val Gly1 5 10 15Gly Glu Asp Gly Glu Gly Ile Phe Val Ser Phe Ile Leu Ala Gly Gly 20 25 30Pro Ala Asp Leu Ser Gly Glu Leu Arg Arg Gly Asp Arg Ile Leu Ser 35 40 45Val Asn Gly Val Asn Leu Arg Asn Ala Thr His Glu Gln Ala Ala Ala 50 55 60Ala Leu Lys Arg Ala Gly Gln Ser Val Thr Ile Val Ala Gln Tyr Arg65 70 75 80Pro Glu Glu Tyr Ser Arg Phe Glu Ser Lys Ile His Asp Leu Arg Glu 85 90 95Gln Met Met Asn Ser Ser Met Ser Ser Gly Ser Gly Ser Leu Arg Thr 100 105 110Ser Glu Lys Arg Ser Leu Glu 115148111PRTHomo sapiens 148Cys Val Glu Arg Leu Glu Leu Phe Pro Val Glu Leu Glu Lys Asp Ser1 5 10 15Glu Gly Leu Gly Ile Ser Ile Ile Gly Met Gly Ala Gly Ala Asp Met 20 25 30Gly Leu Glu Lys Leu Gly Ile Phe Val Lys Thr Val Thr Glu Gly Gly 35 40 45Ala Ala His Arg Asp Gly Arg Ile Gln Val Asn Asp Leu Leu Val Glu 50 55 60Val Asp Gly Thr Ser Leu Val Gly Val Thr Gln Ser Phe Ala Ala Ser65 70 75 80Val Leu Arg Asn Thr Lys Gly Arg Val Arg Phe Met Ile Gly Arg Glu 85 90 95Arg Pro Gly Glu Gln Ser Glu Val Ala Gln Arg Ile His Arg Asp 100 105 11014990PRTHomo sapiens 149Ile Gln Pro Asn Val Ile Ser Val Arg Leu Phe Lys Arg Lys Val Gly1 5 10 15Gly Leu Gly Phe Leu Val Lys Glu Arg Val Ser Lys Pro Pro Val Ile 20 25 30Ile Ser Asp Leu Ile Arg Gly Gly Ala Ala Glu Gln Ser Gly Leu Ile 35 40 45Gln Ala Gly Asp Ile Ile Leu Ala Val Asn Gly Arg Pro Leu Val Asp 50 55

60Leu Ser Tyr Asp Ser Ala Leu Glu Val Leu Arg Gly Ile Ala Ser Glu65 70 75 80Thr His Val Val Leu Ile Leu Arg Gly Pro 85 90150107PRTHomo sapiens 150Gln Ala Asn Ser Asp Glu Ser Asp Ile Ile His Ser Val Arg Val Glu1 5 10 15Lys Ser Pro Ala Gly Arg Leu Gly Phe Ser Val Arg Gly Gly Ser Glu 20 25 30His Gly Leu Gly Ile Phe Val Ser Lys Val Glu Glu Gly Ser Ser Ala 35 40 45Glu Arg Ala Gly Leu Cys Val Gly Asp Lys Ile Thr Glu Val Asn Gly 50 55 60Leu Ser Leu Glu Ser Thr Thr Met Gly Ser Ala Val Lys Val Leu Thr65 70 75 80Ser Ser Ser Arg Leu His Met Met Val Arg Arg Met Gly Arg Val Pro 85 90 95Gly Ile Lys Phe Ser Lys Glu Lys Asn Ser Ser 100 105151106PRTHomo sapiens 151Pro Ser Asp Thr Ser Ser Glu Asp Gly Val Arg Arg Ile Val His Leu1 5 10 15Tyr Thr Thr Ser Asp Asp Phe Cys Leu Gly Phe Asn Ile Arg Gly Gly 20 25 30Lys Glu Phe Gly Leu Gly Ile Tyr Val Ser Lys Val Asp His Gly Gly 35 40 45Leu Ala Glu Glu Asn Gly Ile Lys Val Gly Asp Gln Val Leu Ala Ala 50 55 60Asn Gly Val Arg Phe Asp Asp Ile Ser His Ser Gln Ala Val Glu Val65 70 75 80Leu Lys Gly Gln Thr His Ile Met Leu Thr Ile Lys Glu Thr Gly Arg 85 90 95Tyr Pro Ala Tyr Lys Glu Met Asn Ser Ser 100 105152115PRTHomo sapiens 152Lys Ile Lys Lys Phe Leu Thr Glu Ser His Asp Arg Gln Ala Lys Gly1 5 10 15Lys Ala Ile Thr Lys Lys Lys Tyr Ile Gly Ile Arg Met Met Ser Leu 20 25 30Thr Ser Ser Lys Ala Lys Glu Leu Lys Asp Arg His Arg Asp Phe Pro 35 40 45Asp Val Ile Ser Gly Ala Tyr Ile Ile Glu Val Ile Pro Asp Thr Pro 50 55 60Ala Glu Ala Gly Gly Leu Lys Glu Asn Asp Val Ile Ile Ser Ile Asn65 70 75 80Gly Gln Ser Val Val Ser Ala Asn Asp Val Ser Asp Val Ile Lys Arg 85 90 95Glu Ser Thr Leu Asn Met Val Val Arg Arg Gly Asn Glu Asp Ile Met 100 105 110Ile Thr Val 115153100PRTHomo sapiens 153Pro Asp Gly Glu Ile Thr Ser Ile Lys Ile Asn Arg Val Asp Pro Ser1 5 10 15Glu Ser Leu Ser Ile Arg Leu Val Gly Gly Ser Glu Thr Pro Leu Val 20 25 30His Ile Ile Ile Gln His Ile Tyr Arg Asp Gly Val Ile Ala Arg Asp 35 40 45Gly Arg Leu Leu Pro Gly Asp Ile Ile Leu Lys Val Asn Gly Met Asp 50 55 60Ile Ser Asn Val Pro His Asn Tyr Ala Val Arg Leu Leu Arg Gln Pro65 70 75 80Cys Gln Val Leu Trp Leu Thr Val Met Arg Glu Gln Lys Phe Arg Ser 85 90 95Arg Asn Ser Ser 100154101PRTHomo sapiens 154His Arg Pro Arg Asp Asp Ser Phe His Val Ile Leu Asn Lys Ser Ser1 5 10 15Pro Glu Glu Gln Leu Gly Ile Lys Leu Val Arg Lys Val Asp Glu Pro 20 25 30Gly Val Phe Ile Phe Asn Val Leu Asp Gly Gly Val Ala Tyr Arg His 35 40 45Gly Gln Leu Glu Glu Asn Asp Arg Val Leu Ala Ile Asn Gly His Asp 50 55 60Leu Arg Tyr Gly Ser Pro Glu Ser Ala Ala His Leu Ile Gln Ala Ser65 70 75 80Glu Arg Arg Val His Leu Val Val Ser Arg Gln Val Arg Gln Arg Ser 85 90 95Pro Glu Asn Ser Ser 100155104PRTHomo sapiens 155Pro Thr Ile Thr Cys His Glu Lys Val Val Asn Ile Gln Lys Asp Pro1 5 10 15Gly Glu Ser Leu Gly Met Thr Val Ala Gly Gly Ala Ser His Arg Glu 20 25 30Trp Asp Leu Pro Ile Tyr Val Ile Ser Val Glu Pro Gly Gly Val Ile 35 40 45Ser Arg Asp Gly Arg Ile Lys Thr Gly Asp Ile Leu Leu Asn Val Asp 50 55 60Gly Val Glu Leu Thr Glu Val Ser Arg Ser Glu Ala Val Ala Leu Leu65 70 75 80Lys Arg Thr Ser Ser Ser Ile Val Leu Lys Ala Leu Glu Val Lys Glu 85 90 95Tyr Glu Pro Gln Glu Phe Ile Val 10015699PRTHomo sapiens 156Pro Arg Cys Leu Tyr Asn Cys Lys Asp Ile Val Leu Arg Arg Asn Thr1 5 10 15Ala Gly Ser Leu Gly Phe Cys Ile Val Gly Gly Tyr Glu Glu Tyr Asn 20 25 30Gly Asn Lys Pro Phe Phe Ile Lys Ser Ile Val Glu Gly Thr Pro Ala 35 40 45Tyr Asn Asp Gly Arg Ile Arg Cys Gly Asp Ile Leu Leu Ala Val Asn 50 55 60Gly Arg Ser Thr Ser Gly Met Ile His Ala Cys Leu Ala Arg Leu Leu65 70 75 80Lys Glu Leu Lys Gly Arg Ile Thr Leu Thr Ile Val Ser Trp Pro Gly 85 90 95Thr Phe Leu157101PRTHomo sapiens 157Leu Leu Thr Glu Glu Glu Ile Asn Leu Thr Arg Gly Pro Ser Gly Leu1 5 10 15Gly Phe Asn Ile Val Gly Gly Thr Asp Gln Gln Tyr Val Ser Asn Asp 20 25 30Ser Gly Ile Tyr Val Ser Arg Ile Lys Glu Asn Gly Ala Ala Ala Leu 35 40 45Asp Gly Arg Leu Gln Glu Gly Asp Lys Ile Leu Ser Val Asn Gly Gln 50 55 60Asp Leu Lys Asn Leu Leu His Gln Asp Ala Val Asp Leu Phe Arg Asn65 70 75 80Ala Gly Tyr Ala Val Ser Leu Arg Val Gln His Arg Leu Gln Val Gln 85 90 95Asn Gly Ile His Ser 10015894PRTHomo sapiens 158Pro Val Asp Ala Ile Arg Ile Leu Gly Ile His Lys Arg Ala Gly Glu1 5 10 15Pro Leu Gly Val Thr Phe Arg Val Glu Asn Asn Asp Leu Val Ile Ala 20 25 30Arg Ile Leu His Gly Gly Met Ile Asp Arg Gln Gly Leu Leu His Val 35 40 45Gly Asp Ile Ile Lys Glu Val Asn Gly His Glu Val Gly Asn Asn Pro 50 55 60Lys Glu Leu Gln Glu Leu Leu Lys Asn Ile Ser Gly Ser Val Thr Leu65 70 75 80Lys Ile Leu Pro Ser Tyr Arg Asp Thr Ile Thr Pro Gln Gln 85 9015993PRTHomo sapiens 159Asp Asp Met Val Lys Leu Val Glu Val Pro Asn Asp Gly Gly Pro Leu1 5 10 15Gly Ile His Val Val Pro Phe Ser Ala Arg Gly Gly Arg Thr Leu Gly 20 25 30Leu Leu Val Lys Arg Leu Glu Lys Gly Gly Lys Ala Glu His Glu Asn 35 40 45Leu Phe Arg Glu Asn Asp Cys Ile Val Arg Ile Asn Asp Gly Asp Leu 50 55 60Arg Asn Arg Arg Phe Glu Gln Ala Gln His Met Phe Arg Gln Ala Met65 70 75 80Arg Thr Pro Ile Ile Trp Phe His Val Val Pro Ala Ala 85 9016094PRTHomo sapiens 160Gly Lys Arg Leu Asn Ile Gln Leu Lys Lys Gly Thr Glu Gly Leu Gly1 5 10 15Phe Ser Ile Thr Ser Arg Asp Val Thr Ile Gly Gly Ser Ala Pro Ile 20 25 30Tyr Val Lys Asn Ile Leu Pro Arg Gly Ala Ala Ile Gln Asp Gly Arg 35 40 45Leu Lys Ala Gly Asp Arg Leu Ile Glu Val Asn Gly Val Asp Leu Val 50 55 60Gly Lys Ser Gln Glu Glu Val Val Ser Leu Leu Arg Ser Thr Lys Met65 70 75 80Glu Gly Thr Val Ser Leu Leu Val Phe Arg Gln Glu Asp Ala 85 90161103PRTHomo sapiens 161Thr Pro Asp Gly Thr Arg Glu Phe Leu Thr Phe Glu Val Pro Leu Asn1 5 10 15Asp Ser Gly Ser Ala Gly Leu Gly Val Ser Val Lys Gly Asn Arg Ser 20 25 30Lys Glu Asn His Ala Asp Leu Gly Ile Phe Val Lys Ser Ile Ile Asn 35 40 45Gly Gly Ala Ala Ser Lys Asp Gly Arg Leu Arg Val Asn Asp Gln Leu 50 55 60Ile Ala Val Asn Gly Glu Ser Leu Leu Gly Lys Thr Asn Gln Asp Ala65 70 75 80Met Glu Thr Leu Arg Arg Ser Met Ser Thr Glu Gly Asn Lys Arg Gly 85 90 95Met Ile Gln Leu Ile Val Ala 100162102PRTHomo sapiens 162Leu Pro Glu Thr His Arg Arg Val Arg Leu His Lys His Gly Ser Asp1 5 10 15Arg Pro Leu Gly Phe Tyr Ile Arg Asp Gly Met Ser Val Arg Val Ala 20 25 30Pro Gln Gly Leu Glu Arg Val Pro Gly Ile Phe Ile Ser Arg Leu Val 35 40 45Arg Gly Gly Leu Ala Glu Ser Thr Gly Leu Leu Ala Val Ser Asp Glu 50 55 60Ile Leu Glu Val Asn Gly Ile Glu Val Ala Gly Lys Thr Leu Asp Gln65 70 75 80Val Thr Asp Met Met Val Ala Asn Ser His Asn Leu Ile Val Thr Val 85 90 95Lys Pro Ala Asn Gln Arg 100163111PRTHomo sapiens 163Ile Asp Val Asp Leu Val Pro Glu Thr His Arg Arg Val Arg Leu His1 5 10 15Arg His Gly Cys Glu Lys Pro Leu Gly Phe Tyr Ile Arg Asp Gly Ala 20 25 30Ser Val Arg Val Thr Pro His Gly Leu Glu Lys Val Pro Gly Ile Phe 35 40 45Ile Ser Arg Met Val Pro Gly Gly Leu Ala Glu Ser Thr Gly Leu Leu 50 55 60Ala Val Asn Asp Glu Val Leu Glu Val Asn Gly Ile Glu Val Ala Gly65 70 75 80Lys Thr Leu Asp Gln Val Thr Asp Met Met Ile Ala Asn Ser His Asn 85 90 95Leu Ile Val Thr Val Lys Pro Ala Asn Gln Arg Asn Asn Val Val 100 105 110164100PRTHomo sapiens 164Arg Ser Arg Lys Leu Lys Glu Val Arg Leu Asp Arg Leu His Pro Glu1 5 10 15Gly Leu Gly Leu Ser Val Arg Gly Gly Leu Glu Phe Gly Cys Gly Leu 20 25 30Phe Ile Ser His Leu Ile Lys Gly Gly Gln Ala Asp Ser Val Gly Leu 35 40 45Gln Val Gly Asp Glu Ile Val Arg Ile Asn Gly Tyr Ser Ile Ser Ser 50 55 60Cys Thr His Glu Glu Val Ile Asn Leu Ile Arg Thr Lys Lys Thr Val65 70 75 80Ser Ile Lys Val Arg His Ile Gly Leu Ile Pro Val Lys Ser Ser Pro 85 90 95Asp Glu Phe His 100165102PRTHomo sapiens 165Ile Pro Gly Asn Arg Glu Asn Lys Glu Lys Lys Val Phe Ile Ser Leu1 5 10 15Val Gly Ser Arg Gly Leu Gly Cys Ser Ile Ser Ser Gly Pro Ile Gln 20 25 30Lys Pro Gly Ile Phe Ile Ser His Val Lys Pro Gly Ser Leu Ser Ala 35 40 45Glu Val Gly Leu Glu Ile Gly Asp Gln Ile Val Glu Val Asn Gly Val 50 55 60Asp Phe Ser Asn Leu Asp His Lys Glu Ala Val Asn Val Leu Lys Ser65 70 75 80Ser Arg Ser Leu Thr Ile Ser Ile Val Ala Ala Ala Gly Arg Glu Leu 85 90 95Phe Met Thr Asp Glu Phe 100166103PRTHomo sapiens 166Pro Glu Gln Ile Met Gly Lys Asp Val Arg Leu Leu Arg Ile Lys Lys1 5 10 15Glu Gly Ser Leu Asp Leu Ala Leu Glu Gly Gly Val Asp Ser Pro Ile 20 25 30Gly Lys Val Val Val Ser Ala Val Tyr Glu Arg Gly Ala Ala Glu Arg 35 40 45His Gly Gly Ile Val Lys Gly Asp Glu Ile Met Ala Ile Asn Gly Lys 50 55 60Ile Val Thr Asp Tyr Thr Leu Ala Glu Ala Asp Ala Ala Leu Gln Lys65 70 75 80Ala Trp Asn Gln Gly Gly Asp Trp Ile Asp Leu Val Val Ala Val Cys 85 90 95Pro Pro Lys Glu Tyr Asp Asp 100167103PRTHomo sapiens 167Leu Thr Ser Thr Phe Asn Pro Arg Glu Cys Lys Leu Ser Lys Gln Glu1 5 10 15Gly Gln Asn Tyr Gly Phe Phe Leu Arg Ile Glu Lys Asp Thr Glu Gly 20 25 30His Leu Val Arg Val Val Glu Lys Cys Ser Pro Ala Glu Lys Ala Gly 35 40 45Leu Gln Asp Gly Asp Arg Val Leu Arg Ile Asn Gly Val Phe Val Asp 50 55 60Lys Glu Glu His Met Gln Val Val Asp Leu Val Arg Lys Ser Gly Asn65 70 75 80Ser Val Thr Leu Leu Val Leu Asp Gly Asp Ser Tyr Glu Lys Ala Gly 85 90 95Ser Pro Gly Ile His Arg Asp 10016892PRTHomo sapiens 168Arg Leu Cys Tyr Leu Val Lys Glu Gly Gly Ser Tyr Gly Phe Ser Leu1 5 10 15Lys Thr Val Gln Gly Lys Lys Gly Val Tyr Met Thr Asp Ile Thr Pro 20 25 30Gln Gly Val Ala Met Arg Ala Gly Val Leu Ala Asp Asp His Leu Ile 35 40 45Glu Val Asn Gly Glu Asn Val Glu Asp Ala Ser His Glu Glu Val Val 50 55 60Glu Lys Val Lys Lys Ser Gly Ser Arg Val Met Phe Leu Leu Val Asp65 70 75 80Lys Glu Thr Asp Lys Arg Glu Phe Ile Val Thr Asp 85 90169112PRTHomo sapiens 169Gln Phe Lys Arg Glu Thr Ala Ser Leu Lys Leu Leu Pro His Gln Pro1 5 10 15Arg Ile Val Glu Met Lys Lys Gly Ser Asn Gly Tyr Gly Phe Tyr Leu 20 25 30Arg Ala Gly Ser Glu Gln Lys Gly Gln Ile Ile Lys Asp Ile Asp Ser 35 40 45Gly Ser Pro Ala Glu Glu Ala Gly Leu Lys Asn Asn Asp Leu Val Val 50 55 60Ala Val Asn Gly Glu Ser Val Glu Thr Leu Asp His Asp Ser Val Val65 70 75 80Glu Met Ile Arg Lys Gly Gly Asp Gln Thr Ser Leu Leu Val Val Asp 85 90 95Lys Glu Thr Asp Asn Met Tyr Arg Leu Ala Glu Phe Ile Val Thr Asp 100 105 11017095PRTHomo sapiens 170Pro Asp Thr Thr Glu Glu Val Asp His Lys Pro Lys Leu Cys Arg Leu1 5 10 15Ala Lys Gly Glu Asn Gly Tyr Gly Phe His Leu Asn Ala Ile Arg Gly 20 25 30Leu Pro Gly Ser Phe Ile Lys Glu Val Gln Lys Gly Gly Pro Ala Asp 35 40 45Leu Ala Gly Leu Glu Asp Glu Asp Val Ile Ile Glu Val Asn Gly Val 50 55 60Asn Val Leu Asp Glu Pro Tyr Glu Lys Val Val Asp Arg Ile Gln Ser65 70 75 80Ser Gly Lys Asn Val Thr Leu Leu Val Glx Gly Lys Asn Ser Ser 85 90 9517189PRTHomo sapiens 171Pro Thr Val Pro Gly Lys Val Thr Leu Gln Lys Asp Ala Gln Asn Leu1 5 10 15Ile Gly Ile Ser Ile Gly Gly Gly Ala Gln Tyr Cys Pro Cys Leu Tyr 20 25 30Ile Val Gln Val Phe Asp Asn Thr Pro Ala Ala Leu Asp Gly Thr Val 35 40 45Ala Ala Gly Asp Glu Ile Thr Gly Val Asn Gly Arg Ser Ile Lys Gly 50 55 60Lys Thr Lys Val Glu Val Ala Lys Met Ile Gln Glu Val Lys Gly Glu65 70 75 80Val Thr Ile His Tyr Asn Lys Leu Gln 8517298PRTHomo sapiens 172Ser Gln Gly Val Gly Pro Ile Arg Lys Val Leu Leu Leu Lys Glu Asp1 5 10 15His Glu Gly Leu Gly Ile Ser Ile Thr Gly Gly Lys Glu His Gly Val 20 25 30Pro Ile Leu Ile Ser Glu Ile His Pro Gly Gln Pro Ala Asp Arg Cys 35 40 45Gly Gly Leu His Val Gly Asp Ala Ile Leu Ala Val Asn Gly Val Asn 50 55 60Leu Arg Asp Thr Lys His Lys Glu Ala Val Thr Ile Leu Ser Gln Gln65 70 75 80Arg Gly Glu Ile Glu Phe Glu Val Val Tyr Val Ala Pro Glu Val Asp 85 90 95Ser Asp17397PRTHomo sapiens 173Ile His Val Thr Ile Leu His Lys Glu Glu Gly Ala Gly Leu Gly Phe1 5 10 15Ser Leu Ala Gly Gly Ala Asp Leu Glu Asn Lys Val Ile Thr Val His 20 25 30Arg Val Phe Pro Asn Gly Leu Ala Ser Gln Glu Gly Thr Ile Gln Lys 35 40 45Gly Asn Glu Val Leu Ser Ile Asn Gly Lys Ser Leu Lys Gly Thr Thr 50 55 60His His Asp Ala Leu Ala

Ile Leu Arg Gln Ala Arg Glu Pro Arg Gln65 70 75 80Ala Val Ile Val Thr Arg Lys Leu Thr Pro Glu Glu Phe Ile Val Thr 85 90 95Asp17498PRTHomo sapiens 174Thr Ala Glu Ala Thr Val Cys Thr Val Thr Leu Glu Lys Met Ser Ala1 5 10 15Gly Leu Gly Phe Ser Leu Glu Gly Gly Lys Gly Ser Leu His Gly Asp 20 25 30Lys Pro Leu Thr Ile Asn Arg Ile Phe Lys Gly Ala Ala Ser Glu Gln 35 40 45Ser Glu Thr Val Gln Pro Gly Asp Glu Ile Leu Gln Leu Gly Gly Thr 50 55 60Ala Met Gln Gly Leu Thr Arg Phe Glu Ala Trp Asn Ile Ile Lys Ala65 70 75 80Leu Pro Asp Gly Pro Val Thr Ile Val Ile Arg Arg Lys Ser Leu Gln 85 90 95Ser Lys17599PRTHomo sapiens 175Leu Glu Tyr Glu Glu Ile Thr Leu Glu Arg Gly Asn Ser Gly Leu Gly1 5 10 15Phe Ser Ile Ala Gly Gly Thr Asp Asn Pro His Ile Gly Asp Asp Pro 20 25 30Ser Ile Phe Ile Thr Lys Ile Ile Pro Gly Gly Ala Ala Ala Gln Asp 35 40 45Gly Arg Leu Arg Val Asn Asp Ser Ile Leu Phe Val Asn Glu Val Asp 50 55 60Val Arg Glu Val Thr His Ser Ala Ala Val Glu Ala Leu Lys Glu Ala65 70 75 80Gly Ser Ile Val Arg Leu Tyr Val Met Arg Arg Lys Pro Pro Ala Glu 85 90 95Asn Ser Ser176105PRTHomo sapiens 176His Val Met Arg Arg Lys Pro Pro Ala Glu Lys Val Met Glu Ile Lys1 5 10 15Leu Ile Lys Gly Pro Lys Gly Leu Gly Phe Ser Ile Ala Gly Gly Val 20 25 30Gly Asn Gln His Ile Pro Gly Asp Asn Ser Ile Tyr Val Thr Lys Ile 35 40 45Ile Glu Gly Gly Ala Ala His Lys Asp Gly Arg Leu Gln Ile Gly Asp 50 55 60Lys Ile Leu Ala Val Asn Ser Val Gly Leu Glu Asp Val Met His Glu65 70 75 80Asp Ala Val Ala Ala Leu Lys Asn Thr Tyr Asp Val Val Tyr Leu Lys 85 90 95Val Ala Lys Pro Ser Asn Ala Tyr Leu 100 10517797PRTHomo sapiens 177Arg Glu Asp Ile Pro Arg Glu Pro Arg Arg Ile Val Ile His Arg Gly1 5 10 15Ser Thr Gly Leu Gly Phe Asn Ile Val Gly Gly Glu Asp Gly Glu Gly 20 25 30Ile Phe Ile Ser Phe Ile Leu Ala Gly Gly Pro Ala Asp Leu Ser Gly 35 40 45Glu Leu Arg Lys Gly Asp Gln Ile Leu Ser Val Asn Gly Val Asp Leu 50 55 60Arg Asn Ala Ser His Glu Gln Ala Ala Ile Ala Leu Lys Asn Ala Gly65 70 75 80Gln Thr Val Thr Ile Ile Ala Gln Tyr Lys Pro Glu Phe Ile Val Thr 85 90 95Asp17888PRTHomo sapiens 178Leu Ile Arg Ile Thr Pro Asp Glu Asp Gly Lys Phe Gly Phe Asn Leu1 5 10 15Lys Gly Gly Val Asp Gln Lys Met Pro Leu Val Val Ser Arg Ile Asn 20 25 30Pro Glu Ser Pro Ala Asp Thr Cys Ile Pro Lys Leu Asn Glu Gly Asp 35 40 45Gln Ile Val Leu Ile Asn Gly Arg Asp Ile Ser Glu His Thr His Asp 50 55 60Gln Val Val Met Phe Ile Lys Ala Ser Arg Glu Ser His Ser Arg Glu65 70 75 80Leu Ala Leu Val Ile Arg Arg Arg 8517988PRTHomo sapiens 179Ile Arg Met Lys Pro Asp Glu Asn Gly Arg Phe Gly Phe Asn Val Lys1 5 10 15Gly Gly Tyr Asp Gln Lys Met Pro Val Ile Val Ser Arg Val Ala Pro 20 25 30Gly Thr Pro Ala Asp Leu Cys Val Pro Arg Leu Asn Glu Gly Asp Gln 35 40 45Val Val Leu Ile Asn Gly Arg Asp Ile Ala Glu His Thr His Asp Gln 50 55 60Val Val Leu Phe Ile Lys Ala Ser Cys Glu Arg His Ser Gly Glu Leu65 70 75 80Met Leu Leu Val Arg Pro Asn Ala 85180106PRTHomo sapiens 180Pro Glu Arg Glu Ile Thr Leu Val Asn Leu Lys Lys Asp Ala Lys Tyr1 5 10 15Gly Leu Gly Phe Gln Ile Ile Gly Gly Glu Lys Met Gly Arg Leu Asp 20 25 30Leu Gly Ile Phe Ile Ser Ser Val Ala Pro Gly Gly Pro Ala Asp Phe 35 40 45His Gly Cys Leu Lys Pro Gly Asp Arg Leu Ile Ser Val Asn Ser Val 50 55 60Ser Leu Glu Gly Val Ser His His Ala Ala Ile Glu Ile Leu Gln Asn65 70 75 80Ala Pro Glu Asp Val Thr Leu Val Ile Ser Gln Pro Lys Glu Lys Ile 85 90 95Ser Lys Val Pro Ser Thr Pro Val His Leu 100 10518195PRTHomo sapiens 181Gly Asp Ile Phe Glu Val Glu Leu Ala Lys Asn Asp Asn Ser Leu Gly1 5 10 15Ile Ser Val Thr Gly Gly Val Asn Thr Ser Val Arg His Gly Gly Ile 20 25 30Tyr Val Lys Ala Val Ile Pro Gln Gly Ala Ala Glu Ser Asp Gly Arg 35 40 45Ile His Lys Gly Asp Arg Val Leu Ala Val Asn Gly Val Ser Leu Glu 50 55 60Gly Ala Thr His Lys Gln Ala Val Glu Thr Leu Arg Asn Thr Gly Gln65 70 75 80Val Val His Leu Leu Leu Glu Lys Gly Gln Ser Pro Thr Ser Lys 85 90 95182104PRTHomo sapiens 182Thr Glu Glu Asn Thr Phe Glu Val Lys Leu Phe Lys Asn Ser Ser Gly1 5 10 15Leu Gly Phe Ser Phe Ser Arg Glu Asp Asn Leu Ile Pro Glu Gln Ile 20 25 30Asn Ala Ser Ile Val Arg Val Lys Lys Leu Phe Ala Gly Gln Pro Ala 35 40 45Ala Glu Ser Gly Lys Ile Asp Val Gly Asp Val Ile Leu Lys Val Asn 50 55 60Gly Ala Ser Leu Lys Gly Leu Ser Gln Gln Glu Val Ile Ser Ala Leu65 70 75 80Arg Gly Thr Ala Pro Glu Val Phe Leu Leu Leu Cys Arg Pro Pro Pro 85 90 95Gly Val Leu Pro Glu Ile Asp Thr 10018398PRTHomo sapiens 183Glu Leu Glu Val Glu Leu Leu Ile Thr Leu Ile Lys Ser Glu Lys Ala1 5 10 15Ser Leu Gly Phe Thr Val Thr Lys Gly Asn Gln Arg Ile Gly Cys Tyr 20 25 30Val His Asp Val Ile Gln Asp Pro Ala Lys Ser Asp Gly Arg Leu Lys 35 40 45Pro Gly Asp Arg Leu Ile Lys Val Asn Asp Thr Asp Val Thr Asn Met 50 55 60Thr His Thr Asp Ala Val Asn Leu Leu Arg Ala Ala Ser Lys Thr Val65 70 75 80Arg Leu Val Ile Gly Arg Val Leu Glu Leu Pro Arg Ile Pro Met Leu 85 90 95Pro His18494PRTHomo sapiens 184Met Leu Pro His Leu Leu Pro Asp Ile Thr Leu Thr Cys Asn Lys Glu1 5 10 15Glu Leu Gly Phe Ser Leu Cys Gly Gly His Asp Ser Leu Tyr Gln Val 20 25 30Val Tyr Ile Ser Asp Ile Asn Pro Arg Ser Val Ala Ala Ile Glu Gly 35 40 45Asn Leu Gln Leu Leu Asp Val Ile His Tyr Val Asn Gly Val Ser Thr 50 55 60Gln Gly Met Thr Leu Glu Glu Val Asn Arg Ala Leu Asp Met Ser Leu65 70 75 80Pro Ser Leu Val Leu Lys Ala Thr Arg Asn Asp Leu Pro Val 85 9018593PRTHomo sapiens 185Arg Pro Ser Pro Pro Arg Val Arg Ser Val Glu Val Ala Arg Gly Arg1 5 10 15Ala Gly Tyr Gly Phe Thr Leu Ser Gly Gln Ala Pro Cys Val Leu Ser 20 25 30Cys Val Met Arg Gly Ser Pro Ala Asp Phe Val Gly Leu Arg Ala Gly 35 40 45Asp Gln Ile Leu Ala Val Asn Glu Ile Asn Val Lys Lys Ala Ser His 50 55 60Glu Asp Val Val Lys Leu Ile Gly Lys Cys Ser Gly Val Leu His Met65 70 75 80Val Ile Ala Glu Gly Val Gly Arg Phe Glu Ser Cys Ser 85 9018696PRTHomo sapiens 186Leu Cys Ser Glu Arg Arg Tyr Arg Gln Ile Thr Ile Pro Arg Gly Lys1 5 10 15Asp Gly Phe Gly Phe Thr Ile Cys Cys Asp Ser Pro Val Arg Val Gln 20 25 30Ala Val Asp Ser Gly Gly Pro Ala Glu Arg Ala Gly Leu Gln Gln Leu 35 40 45Asp Thr Val Leu Gln Leu Asn Glu Arg Pro Val Glu His Trp Lys Cys 50 55 60Val Glu Leu Ala His Glu Ile Arg Ser Cys Pro Ser Glu Ile Ile Leu65 70 75 80Leu Val Trp Arg Met Val Pro Gln Val Lys Pro Gly Ile His Arg Asp 85 90 95187104PRTHomo sapiens 187Ile Ser Phe Ser Ala Asn Lys Arg Trp Thr Pro Pro Arg Ser Ile Arg1 5 10 15Phe Thr Ala Glu Glu Gly Asp Leu Gly Phe Thr Leu Arg Gly Asn Ala 20 25 30Pro Val Gln Val His Phe Leu Asp Pro Tyr Cys Ser Ala Ser Val Ala 35 40 45Gly Ala Arg Glu Gly Asp Tyr Ile Val Ser Ile Gln Leu Val Asp Cys 50 55 60Lys Trp Leu Thr Leu Ser Glu Val Met Lys Leu Leu Lys Ser Phe Gly65 70 75 80Glu Asp Glu Ile Glu Met Lys Val Val Ser Leu Leu Asp Ser Thr Ser 85 90 95Ser Met His Asn Lys Ser Ala Thr 100188109PRTHomo sapiens 188Arg Gly Glu Lys Lys Asn Ser Ser Ser Gly Ile Ser Gly Ser Gln Arg1 5 10 15Arg Tyr Ile Gly Val Met Met Leu Thr Leu Ser Pro Ser Ile Leu Ala 20 25 30Glu Leu Gln Leu Arg Glu Pro Ser Phe Pro Asp Val Gln His Gly Val 35 40 45Leu Ile His Lys Val Ile Leu Gly Ser Pro Ala His Arg Ala Gly Leu 50 55 60Arg Pro Gly Asp Val Ile Leu Ala Ile Gly Glu Gln Met Val Gln Asn65 70 75 80Ala Glu Asp Val Tyr Glu Ala Val Arg Thr Gln Ser Gln Leu Ala Val 85 90 95Gln Ile Arg Arg Gly Arg Glu Thr Leu Thr Leu Tyr Val 100 105189111PRTHomo sapiens 189Glu Glu Lys Thr Val Val Leu Gln Lys Lys Asp Asn Glu Gly Phe Gly1 5 10 15Phe Val Leu Arg Gly Ala Lys Ala Asp Thr Pro Ile Glu Glu Phe Thr 20 25 30Pro Thr Pro Ala Phe Pro Ala Leu Gln Tyr Leu Glu Ser Val Asp Glu 35 40 45Gly Gly Val Ala Trp Gln Ala Gly Leu Arg Thr Gly Asp Phe Leu Ile 50 55 60Glu Val Asn Asn Glu Asn Val Val Lys Val Gly His Arg Gln Val Val65 70 75 80Asn Met Ile Arg Gln Gly Gly Asn His Leu Val Leu Lys Val Val Thr 85 90 95Val Thr Arg Asn Leu Asp Pro Asp Asp Thr Ala Arg Lys Lys Ala 100 105 110190110PRTHomo sapiens 190Ser Asp Tyr Val Ile Asp Asp Lys Val Ala Val Leu Gln Lys Arg Asp1 5 10 15His Glu Gly Phe Gly Phe Val Leu Arg Gly Ala Lys Ala Glu Thr Pro 20 25 30Ile Glu Glu Phe Thr Pro Thr Pro Ala Phe Pro Ala Leu Gln Tyr Leu 35 40 45Glu Ser Val Asp Val Glu Gly Val Ala Trp Arg Ala Gly Leu Arg Thr 50 55 60Gly Asp Phe Leu Ile Glu Val Asn Gly Val Asn Val Val Lys Val Gly65 70 75 80His Lys Gln Val Val Ala Leu Ile Arg Gln Gly Gly Asn Arg Leu Val 85 90 95Met Lys Val Val Ser Val Thr Arg Lys Pro Glu Glu Asp Gly 100 105 11019191PRTHomo sapiens 191Ile Tyr Leu Glu Ala Phe Leu Glu Gly Gly Ala Pro Trp Gly Phe Thr1 5 10 15Leu Lys Gly Gly Leu Glu His Gly Glu Pro Leu Ile Ile Ser Lys Val 20 25 30Glu Glu Gly Gly Lys Ala Asp Thr Leu Ser Ser Lys Leu Gln Ala Gly 35 40 45Asp Glu Val Val His Ile Asn Glu Val Thr Leu Ser Ser Ser Arg Lys 50 55 60Glu Ala Val Ser Leu Val Lys Gly Ser Tyr Lys Thr Leu Arg Leu Val65 70 75 80Val Arg Arg Asp Val Cys Thr Asp Pro Gly His 85 9019283PRTHomo sapiens 192Ile Arg Leu Cys Arg Leu Val Arg Gly Glu Gln Gly Tyr Gly Phe His1 5 10 15Leu His Gly Glu Lys Gly Arg Arg Gly Gln Phe Ile Arg Arg Val Glu 20 25 30Pro Gly Ser Pro Ala Glu Ala Ala Ala Leu Arg Ala Gly Asp Arg Leu 35 40 45Val Glu Val Asn Gly Val Asn Val Glu Gly Glu Thr His His Gln Val 50 55 60Val Gln Arg Ile Lys Ala Val Glu Gly Gln Thr Arg Leu Leu Val Val65 70 75 80Asp Gln Asn19384PRTHomo sapiens 193Ile Arg His Leu Arg Lys Gly Pro Gln Gly Tyr Gly Phe Asn Leu His1 5 10 15Ser Asp Lys Ser Arg Pro Gly Gln Tyr Ile Arg Ser Val Asp Pro Gly 20 25 30Ser Pro Ala Ala Arg Ser Gly Leu Arg Ala Gln Asp Arg Leu Ile Glu 35 40 45Val Asn Gly Gln Asn Val Glu Gly Leu Arg His Ala Glu Val Val Ala 50 55 60Ser Ile Lys Ala Arg Glu Asp Glu Ala Arg Leu Leu Val Val Asp Pro65 70 75 80Glu Thr Asp Glu19492PRTHomo sapiens 194Pro Gly Val Arg Glu Ile His Leu Cys Lys Asp Glu Arg Gly Lys Thr1 5 10 15Gly Leu Arg Leu Arg Lys Val Asp Gln Gly Leu Phe Val Gln Leu Val 20 25 30Gln Ala Asn Thr Pro Ala Ser Leu Val Gly Leu Arg Phe Gly Asp Gln 35 40 45Leu Leu Gln Ile Asp Gly Arg Asp Cys Ala Gly Trp Ser Ser His Lys 50 55 60Ala His Gln Val Val Lys Lys Ala Ser Gly Asp Lys Ile Val Val Val65 70 75 80Val Arg Asp Arg Pro Phe Gln Arg Thr Val Thr Met 85 9019590PRTHomo sapiens 195Pro Phe Gln Arg Thr Val Thr Met His Lys Asp Ser Met Gly His Val1 5 10 15Gly Phe Val Ile Lys Lys Gly Lys Ile Val Ser Leu Val Lys Gly Ser 20 25 30Ser Ala Ala Arg Asn Gly Leu Leu Thr Asn His Tyr Val Cys Glu Val 35 40 45Asp Gly Gln Asn Val Ile Gly Leu Lys Asp Lys Lys Ile Met Glu Ile 50 55 60Leu Ala Thr Ala Gly Asn Val Val Thr Leu Thr Ile Ile Pro Ser Val65 70 75 80Ile Tyr Glu His Ile Val Glu Phe Ile Val 85 90196109PRTHomo sapiens 196Leu Lys Glu Lys Thr Val Leu Leu Gln Lys Lys Asp Ser Glu Gly Phe1 5 10 15Gly Phe Val Leu Arg Gly Ala Lys Ala Gln Thr Pro Ile Glu Glu Phe 20 25 30Thr Pro Thr Pro Ala Phe Pro Ala Leu Gln Tyr Leu Glu Ser Val Asp 35 40 45Glu Gly Gly Val Ala Trp Arg Ala Gly Leu Arg Met Gly Asp Phe Leu 50 55 60Ile Glu Val Asn Gly Gln Asn Val Val Lys Val Gly His Arg Gln Val65 70 75 80Val Asn Met Ile Arg Gln Gly Gly Asn Thr Leu Met Val Lys Val Val 85 90 95Met Val Thr Arg His Pro Asp Met Asp Glu Ala Val Gln 100 10519788PRTHomo sapiens 197Leu Glu Ile Lys Gln Gly Ile Arg Glu Val Ile Leu Cys Lys Asp Gln1 5 10 15Asp Gly Lys Ile Gly Leu Arg Leu Lys Ser Ile Asp Asn Gly Ile Phe 20 25 30Val Gln Leu Val Gln Ala Asn Ser Pro Ala Ser Leu Val Gly Leu Arg 35 40 45Phe Gly Asp Gln Val Leu Gln Ile Asn Gly Glu Asn Cys Ala Gly Trp 50 55 60Ser Ser Asp Lys Ala His Lys Val Leu Lys Gln Ala Phe Gly Glu Lys65 70 75 80Ile Thr Met Arg Ile His Arg Asp 8519875PRTHomo sapiens 198Arg Asp Arg Pro Phe Glu Arg Thr Ile Thr Met His Lys Asp Ser Thr1 5 10 15Gly His Val Gly Phe Ile Phe Lys Asn Gly Lys Ile Thr Ser Ile Val 20 25 30Lys Asp Ser Ser Ala Ala Arg Asn Gly Leu Leu Thr Glu His Asn Ile 35 40 45Cys Glu Ile Asn Gly Gln Asn Val Ile Gly Leu Lys Asp Ser Gln Ile 50 55 60Ala

Asp Ile Leu Ser Thr Ser Gly Asn Ser Ser65 70 7519994PRTHomo sapiens 199Gln Arg Arg Arg Val Thr Val Arg Lys Ala Asp Ala Gly Gly Leu Gly1 5 10 15Ile Ser Ile Lys Gly Gly Arg Glu Asn Lys Met Pro Ile Leu Ile Ser 20 25 30Lys Ile Phe Lys Gly Leu Ala Ala Asp Gln Thr Glu Ala Leu Phe Val 35 40 45Gly Asp Ala Ile Leu Ser Val Asn Gly Glu Asp Leu Ser Ser Ala Thr 50 55 60His Asp Glu Ala Val Gln Val Leu Lys Lys Thr Gly Lys Glu Val Val65 70 75 80Leu Glu Val Lys Tyr Met Lys Asp Val Ser Pro Tyr Phe Lys 85 9020089PRTHomo sapiens 200Ile Arg Val Val Lys Gln Glu Ala Gly Gly Leu Gly Ile Ser Ile Lys1 5 10 15Gly Gly Arg Glu Asn Arg Met Pro Ile Leu Ile Ser Lys Ile Phe Pro 20 25 30Gly Leu Ala Ala Asp Gln Ser Arg Ala Leu Arg Leu Gly Asp Ala Ile 35 40 45Leu Ser Val Asn Gly Thr Asp Leu Arg Gln Ala Thr His Asp Gln Ala 50 55 60Val Gln Ala Leu Lys Arg Ala Gly Lys Glu Val Leu Leu Glu Val Lys65 70 75 80Phe Ile Arg Glu Phe Ile Val Thr Asp 85201101PRTHomo sapiens 201Glu Pro Phe Tyr Ser Gly Glu Arg Thr Val Thr Ile Arg Arg Gln Thr1 5 10 15Val Gly Gly Phe Gly Leu Ser Ile Lys Gly Gly Ala Glu His Asn Ile 20 25 30Pro Val Val Val Ser Lys Ile Ser Lys Glu Gln Arg Ala Glu Leu Ser 35 40 45Gly Leu Leu Phe Ile Gly Asp Ala Ile Leu Gln Ile Asn Gly Ile Asn 50 55 60Val Arg Lys Cys Arg His Glu Glu Val Val Gln Val Leu Arg Asn Ala65 70 75 80Gly Glu Glu Val Thr Leu Thr Val Ser Phe Leu Lys Arg Ala Pro Ala 85 90 95Phe Leu Lys Leu Pro 10020299PRTHomo sapiens 202Ser His Gln Gly Arg Asn Arg Arg Thr Val Thr Leu Arg Arg Gln Pro1 5 10 15Val Gly Gly Leu Gly Leu Ser Ile Lys Gly Gly Ser Glu His Asn Val 20 25 30Pro Val Val Ile Ser Lys Ile Phe Glu Asp Gln Ala Ala Asp Gln Thr 35 40 45Gly Met Leu Phe Val Gly Asp Ala Val Leu Gln Val Asn Gly Ile His 50 55 60Val Glu Asn Ala Thr His Glu Glu Val Val His Leu Leu Arg Asn Ala65 70 75 80Gly Asp Glu Val Thr Ile Thr Val Glu Tyr Leu Arg Glu Ala Pro Ala 85 90 95Phe Leu Lys20391PRTHomo sapiens 203Arg Gly Glu Thr Lys Glu Val Glu Val Thr Lys Thr Glu Asp Ala Leu1 5 10 15Gly Leu Thr Ile Thr Asp Asn Gly Ala Gly Tyr Ala Phe Ile Lys Arg 20 25 30Ile Lys Glu Gly Ser Ile Ile Asn Arg Ile Glu Ala Val Cys Val Gly 35 40 45Asp Ser Ile Glu Ala Ile Asn Asp His Ser Ile Val Gly Cys Arg His 50 55 60Tyr Glu Val Ala Lys Met Leu Arg Glu Leu Pro Lys Ser Gln Pro Phe65 70 75 80Thr Leu Arg Leu Val Gln Pro Lys Arg Ala Phe 85 9020488PRTHomo sapiens 204His Ser Ile His Ile Glu Lys Ser Asp Thr Ala Ala Asp Thr Tyr Gly1 5 10 15Phe Ser Leu Ser Ser Val Glu Glu Asp Gly Ile Arg Arg Leu Tyr Val 20 25 30Asn Ser Val Lys Glu Thr Gly Leu Ala Ser Lys Lys Gly Leu Lys Ala 35 40 45Gly Asp Glu Ile Leu Glu Ile Asn Asn Arg Ala Ala Asp Ala Leu Asn 50 55 60Ser Ser Met Leu Lys Asp Phe Leu Ser Gln Pro Ser Leu Gly Leu Leu65 70 75 80Val Arg Thr Tyr Pro Glu Leu Glu 8520597PRTHomo sapiens 205Pro Leu Asn Val Tyr Asp Val Gln Leu Thr Lys Thr Gly Ser Val Cys1 5 10 15Asp Phe Gly Phe Ala Val Thr Ala Gln Val Asp Glu Arg Gln His Leu 20 25 30Ser Arg Ile Phe Ile Ser Asp Val Leu Pro Asp Gly Leu Ala Tyr Gly 35 40 45Glu Gly Leu Arg Lys Gly Asn Glu Ile Met Thr Leu Asn Gly Glu Ala 50 55 60Val Ser Asp Leu Asp Leu Lys Gln Met Glu Ala Leu Phe Ser Glu Lys65 70 75 80Ser Val Gly Leu Thr Leu Ile Ala Arg Pro Pro Asp Thr Lys Ala Thr 85 90 95Leu206103PRTHomo sapiens 206Gln Arg Val Glu Ile His Lys Leu Arg Gln Gly Glu Asn Leu Ile Leu1 5 10 15Gly Phe Ser Ile Gly Gly Gly Ile Asp Gln Asp Pro Ser Gln Asn Pro 20 25 30Phe Ser Glu Asp Lys Thr Asp Lys Gly Ile Tyr Val Thr Arg Val Ser 35 40 45Glu Gly Gly Pro Ala Glu Ile Ala Gly Leu Gln Ile Gly Asp Lys Ile 50 55 60Met Gln Val Asn Gly Trp Asp Met Thr Met Val Thr His Asp Gln Ala65 70 75 80Arg Lys Arg Leu Thr Lys Arg Ser Glu Glu Val Val Arg Leu Leu Val 85 90 95Thr Arg Gln Ser Leu Gln Lys 10020786PRTHomo sapiens 207Arg Lys Glu Val Glu Val Phe Lys Ser Glu Asp Ala Leu Gly Leu Thr1 5 10 15Ile Thr Asp Asn Gly Ala Gly Tyr Ala Phe Ile Lys Arg Ile Lys Glu 20 25 30Gly Ser Val Ile Asp His Ile His Leu Ile Ser Val Gly Asp Met Ile 35 40 45Glu Ala Ile Asn Gly Gln Ser Leu Leu Gly Cys Arg His Tyr Glu Val 50 55 60Ala Arg Leu Leu Lys Glu Leu Pro Arg Gly Arg Thr Phe Thr Leu Lys65 70 75 80Leu Thr Glu Pro Arg Lys 8520891PRTHomo sapiens 208His Ser His Pro Arg Val Val Glu Leu Pro Lys Thr Asp Glu Gly Leu1 5 10 15Gly Phe Asn Val Met Gly Gly Lys Glu Gln Asn Ser Pro Ile Tyr Ile 20 25 30Ser Arg Ile Ile Pro Gly Gly Val Ala Glu Arg His Gly Gly Leu Lys 35 40 45Arg Gly Asp Gln Leu Leu Ser Val Asn Gly Val Ser Val Glu Gly Glu 50 55 60His His Glu Lys Ala Val Glu Leu Leu Lys Ala Ala Lys Asp Ser Val65 70 75 80Lys Leu Val Val Arg Tyr Thr Pro Lys Val Leu 85 9020996PRTHomo sapiens 209Ile Ser Asn Gln Lys Arg Gly Val Lys Val Leu Lys Gln Glu Leu Gly1 5 10 15Gly Leu Gly Ile Ser Ile Lys Gly Gly Lys Glu Asn Lys Met Pro Ile 20 25 30Leu Ile Ser Lys Ile Phe Lys Gly Leu Ala Ala Asp Gln Thr Gln Ala 35 40 45Leu Tyr Val Gly Asp Ala Ile Leu Ser Val Asn Gly Ala Asp Leu Arg 50 55 60Asp Ala Thr His Asp Glu Ala Val Gln Ala Leu Lys Arg Ala Gly Lys65 70 75 80Glu Val Leu Leu Glu Val Lys Tyr Met Arg Glu Ala Thr Pro Tyr Val 85 90 95210110PRTHomo sapiens 210Ile His Phe Ser Asn Ser Glu Asn Cys Lys Glu Leu Gln Leu Glu Lys1 5 10 15His Lys Gly Glu Ile Leu Gly Val Val Val Val Glu Ser Gly Trp Gly 20 25 30Ser Ile Leu Pro Thr Val Ile Leu Ala Asn Met Met Asn Gly Gly Pro 35 40 45Ala Ala Arg Ser Gly Lys Leu Ser Ile Gly Asp Gln Ile Met Ser Ile 50 55 60Asn Gly Thr Ser Leu Val Gly Leu Pro Leu Ala Thr Cys Gln Gly Ile65 70 75 80Ile Lys Gly Leu Lys Asn Gln Thr Gln Val Lys Leu Asn Ile Val Ser 85 90 95Cys Pro Pro Val Thr Thr Val Leu Ile Lys Arg Asn Ser Ser 100 105 11021194PRTHomo sapiens 211Ile Pro Pro Val Thr Thr Val Leu Ile Lys Arg Pro Asp Leu Lys Tyr1 5 10 15Gln Leu Gly Phe Ser Val Gln Asn Gly Ile Ile Cys Ser Leu Met Arg 20 25 30Gly Gly Ile Ala Glu Arg Gly Gly Val Arg Val Gly His Arg Ile Ile 35 40 45Glu Ile Asn Gly Gln Ser Val Val Ala Thr Ala His Glu Lys Ile Val 50 55 60Gln Ala Leu Ser Asn Ser Val Gly Glu Ile His Met Lys Thr Met Pro65 70 75 80Ala Ala Met Phe Arg Leu Leu Thr Gly Gln Glu Asn Ser Ser 85 90212101PRTHomo sapiens 212Ile Trp Glu Gln His Thr Val Thr Leu His Arg Ala Pro Gly Phe Gly1 5 10 15Phe Gly Ile Ala Ile Ser Gly Gly Arg Asp Asn Pro His Phe Gln Ser 20 25 30Gly Glu Thr Ser Ile Val Ile Ser Asp Val Leu Lys Gly Gly Pro Ala 35 40 45Glu Gly Gln Leu Gln Glu Asn Asp Arg Val Ala Met Val Asn Gly Val 50 55 60Ser Met Asp Asn Val Glu His Ala Phe Ala Val Gln Gln Leu Arg Lys65 70 75 80Ser Gly Lys Asn Ala Lys Ile Thr Ile Arg Arg Lys Lys Lys Val Gln 85 90 95Ile Pro Asn Ser Ser 10021395PRTHomo sapiens 213Ile Ser Ser Gln Pro Ala Lys Pro Thr Lys Val Thr Leu Val Lys Ser1 5 10 15Arg Lys Asn Glu Glu Tyr Gly Leu Arg Leu Ala Ser His Ile Phe Val 20 25 30Lys Glu Ile Ser Gln Asp Ser Leu Ala Ala Arg Asp Gly Asn Ile Gln 35 40 45Glu Gly Asp Val Val Leu Lys Ile Asn Gly Thr Val Thr Glu Asn Met 50 55 60Ser Leu Thr Asp Ala Lys Thr Leu Ile Glu Arg Ser Lys Gly Lys Leu65 70 75 80Lys Met Val Val Gln Arg Asp Arg Ala Thr Leu Leu Asn Ser Ser 85 90 9521490PRTHomo sapiens 214Ile Arg Met Lys Leu Val Lys Phe Arg Lys Gly Asp Ser Val Gly Leu1 5 10 15Arg Leu Ala Gly Gly Asn Asp Val Gly Ile Phe Val Ala Gly Val Leu 20 25 30Glu Asp Ser Pro Ala Ala Lys Glu Gly Leu Glu Glu Gly Asp Gln Ile 35 40 45Leu Arg Val Asn Asn Val Asp Phe Thr Asn Ile Ile Arg Glu Glu Ala 50 55 60Val Leu Phe Leu Leu Asp Leu Pro Lys Gly Glu Glu Val Thr Ile Leu65 70 75 80Ala Gln Lys Lys Lys Asp Val Phe Ser Asn 85 9021596PRTHomo sapiens 215Leu Ile Trp Glu Gln Tyr Thr Val Thr Leu Gln Lys Asp Ser Lys Arg1 5 10 15Gly Phe Gly Ile Ala Val Ser Gly Gly Arg Asp Asn Pro His Phe Glu 20 25 30Asn Gly Glu Thr Ser Ile Val Ile Ser Asp Val Leu Pro Gly Gly Pro 35 40 45Ala Asp Gly Leu Leu Gln Glu Asn Asp Arg Val Val Met Val Asn Gly 50 55 60Thr Pro Met Glu Asp Val Leu His Ser Phe Ala Val Gln Gln Leu Arg65 70 75 80Lys Ser Gly Lys Val Ala Ala Ile Val Val Lys Arg Pro Arg Lys Val 85 90 9521679PRTHomo sapiens 216Arg Val Leu Leu Met Lys Ser Arg Ala Asn Glu Glu Tyr Gly Leu Arg1 5 10 15Leu Gly Ser Gln Ile Phe Val Lys Glu Met Thr Arg Thr Gly Leu Ala 20 25 30Thr Lys Asp Gly Asn Leu His Glu Gly Asp Ile Ile Leu Lys Ile Asn 35 40 45Gly Thr Val Thr Glu Asn Met Ser Leu Thr Asp Ala Arg Lys Leu Ile 50 55 60Glu Lys Ser Arg Gly Lys Leu Gln Leu Val Val Leu Arg Asp Ser65 70 7521790PRTHomo sapiens 217His Ala Pro Asn Thr Lys Met Val Arg Phe Lys Lys Gly Asp Ser Val1 5 10 15Gly Leu Arg Leu Ala Gly Gly Asn Asp Val Gly Ile Phe Val Ala Gly 20 25 30Ile Gln Glu Gly Thr Ser Ala Glu Gln Glu Gly Leu Gln Glu Gly Asp 35 40 45Gln Ile Leu Lys Val Asn Thr Gln Asp Phe Arg Gly Leu Val Arg Glu 50 55 60Asp Ala Val Leu Tyr Leu Leu Glu Ile Pro Lys Gly Glu Met Val Thr65 70 75 80Ile Leu Ala Gln Ser Arg Ala Asp Val Tyr 85 90218106PRTHomo sapiens 218Ile Pro Gly Asn Ser Thr Ile Trp Glu Gln His Thr Ala Thr Leu Ser1 5 10 15Lys Asp Pro Arg Arg Gly Phe Gly Ile Ala Ile Ser Gly Gly Arg Asp 20 25 30Arg Pro Gly Gly Ser Met Val Val Ser Asp Val Val Pro Gly Gly Pro 35 40 45Ala Glu Gly Arg Leu Gln Thr Gly Asp His Ile Val Met Val Asn Gly 50 55 60Val Ser Met Glu Asn Ala Thr Ser Ala Phe Ala Ile Gln Ile Leu Lys65 70 75 80Thr Cys Thr Lys Met Ala Asn Ile Thr Val Lys Arg Pro Arg Arg Ile 85 90 95His Leu Pro Ala Glu Phe Ile Val Thr Asp 100 10521998PRTHomo sapiens 219Gln Asp Val Gln Met Lys Pro Val Lys Ser Val Leu Val Lys Arg Arg1 5 10 15Asp Ser Glu Glu Phe Gly Val Lys Leu Gly Ser Gln Ile Phe Ile Lys 20 25 30His Ile Thr Asp Ser Gly Leu Ala Ala Arg His Arg Gly Leu Gln Glu 35 40 45Gly Asp Leu Ile Leu Gln Ile Asn Gly Val Ser Ser Gln Asn Leu Ser 50 55 60Leu Asn Asp Thr Arg Arg Leu Ile Glu Lys Ser Glu Gly Lys Leu Ser65 70 75 80Leu Leu Val Leu Arg Asp Arg Gly Gln Phe Leu Val Asn Ile Pro Asn 85 90 95Ser Ser220104PRTHomo sapiens 220Arg Gly Tyr Ser Pro Asp Thr Arg Val Val Arg Phe Leu Lys Gly Lys1 5 10 15Ser Ile Gly Leu Arg Leu Ala Gly Gly Asn Asp Val Gly Ile Phe Val 20 25 30Ser Gly Val Gln Ala Gly Ser Pro Ala Asp Gly Gln Gly Ile Gln Glu 35 40 45Gly Asp Gln Ile Leu Gln Val Asn Asp Val Pro Phe Gln Asn Leu Thr 50 55 60Arg Glu Glu Ala Val Gln Phe Leu Leu Gly Leu Pro Pro Gly Glu Glu65 70 75 80Met Glu Leu Val Thr Gln Arg Lys Gln Asp Ile Phe Trp Lys Met Val 85 90 95Gln Ser Glu Phe Ile Val Thr Asp 10022110PRTHuman papillomavirus 221Gly Tyr Cys Arg Asn Cys Ile Arg Lys Gln1 5 1022210PRTHuman papillomavirus 222Trp Thr Thr Cys Met Glu Asp Leu Leu Pro1 5 1022310PRTHuman papillomavirus 223Gly Ile Cys Arg Leu Cys Lys His Phe Gln1 5 1022410PRTHuman papillomavirus 224Lys Gly Leu Cys Arg Gln Cys Lys Gln Ile1 5 1022510PRTHuman papillomavirus 225Trp Leu Arg Cys Thr Val Arg Ile Pro Gln1 5 1022610PRTHuman papillomavirus 226Arg Gln Cys Lys His Phe Tyr Asn Asp Trp1 5 1022710PRTHuman papillomavirus 227Cys Arg Asn Cys Ile Ser His Glu Gly Arg1 5 1022810PRTHuman papillomavirus 228Cys Cys Arg Asn Cys Tyr Glu His Glu Gly1 5 1022910PRTHuman papillomavirus 229Ser Ser Arg Thr Arg Arg Glu Thr Gln Leu1 5 1023010PRTHuman papillomavirus 230Arg Leu Gln Arg Arg Arg Glu Thr Gln Val1 5 1023110PRTHuman papillomavirus 231Trp Arg Arg Pro Arg Thr Glu Thr Gln Val1 5 1023210PRTHuman papillomavirus 232Trp Lys Pro Thr Arg Arg Glu Thr Glu Val1 5 1023310PRTHuman papillomavirus 233Arg Arg Thr Leu Arg Arg Glu Thr Gln Val1 5 1023410PRTHuman papillomavirus 234Arg Arg Leu Thr Arg Arg Glu Thr Gln Val1 5 1023510PRTHuman papillomavirus 235Arg Leu Arg Arg Arg Arg Glu Thr Gln Val1 5 1023610PRTHuman papillomavirus 236Arg Leu Gln Arg Arg Asn Glu Thr Gln Val1 5 1023710PRTHuman papillomavirus 237Arg Leu Gln Arg Arg Arg Val Thr Gln Val1 5 1023810PRTHuman papillomavirus 238Thr Ser Arg Glu Pro Arg Glu Ser Thr Val1 5 1023910PRTHuman papillomavirus 239Gln Arg Gln Ala Arg Ser Glu Thr Leu Val1 5 1024010PRTHuman papillomavirus 240Arg Leu Gln Arg Arg Arg Gln Thr Gln Val1 5 1024110PRTHuman papillomavirus 241Arg Leu Gln Arg Arg Arg Glu Thr Ala Leu1 5 1024210PRTHuman papillomavirus

242Thr Ser Arg Gln Ala Thr Glu Ser Thr Val1 5 1024310PRTHuman papillomavirus 243Arg Arg Arg Thr Arg Gln Glu Thr Gln Val1 5 1024410PRTHuman papillomavirus 244Arg Arg Arg Glu Ala Thr Glu Thr Gln Val1 5 1024510PRTHuman papillomavirus 245Arg Pro Arg Arg Gln Thr Glu Thr Gln Val1 5 1024610PRTHuman papillomavirus 246Arg His Thr Thr Ala Thr Glu Ser Ala Val1 5 1024710PRTHuman papillomavirus 247Thr Ser Arg Gln Ala Thr Glu Ser Thr Val1 5 1024810PRTHuman papillomavirus 248Arg Cys Trp Arg Pro Ser Ala Thr Val Val1 5 1024910PRTHuman papillomavirus 249Pro Pro Arg Gln Arg Ser Glu Thr Gln Val1 5 1025024DNAArtificial SequenceDescription of Artificial Sequence Synthetic primer 250aaaagatcta caatactatg gcgc 2425126DNAArtificial SequenceDescription of Artificial Sequence Synthetic primer 251agggaattcc agacttaata ttatac 2625226DNAArtificial SequenceDescription of Artificial Sequence Synthetic primer 252aaaggatcca ttttatgcac caaaag 2625328DNAArtificial SequenceDescription of Artificial Sequence Synthetic primer 253atggaattct atctccatgc atgattac 2825426DNAArtificial SequenceDescription of Artificial Sequence Synthetic primer 254gaggaattca ccacaatact atggcg 2625526DNAArtificial SequenceDescription of Artificial Sequence Synthetic primer 255aggagatctc atacttaata ttatac 2625627DNAArtificial SequenceDescription of Artificial Sequence Synthetic primer 256ttgagatctt cagcgtcgtt ggagtcg 2725726DNAArtificial SequenceDescription of Artificial Sequence Synthetic primer 257aaagaattca ttttatgcac caaaag 2625828DNAArtificial SequenceDescription of Artificial Sequence Synthetic primer 258atgggatcct atctccatgc atgattac 2825932DNAArtificial SequenceDescription of Artificial Sequence Synthetic primer 259ctgggatcct catcaacgtg ttcttgatga tc 3226027DNAArtificial SequenceDescription of Artificial Sequence Synthetic primer 260aagaaagctt tttatgcacc aaaagag 2726129DNAArtificial SequenceDescription of Artificial Sequence Synthetic primer 261aatcaagctt tatctccatg catgattac 2926230DNAArtificial SequenceDescription of Artificial Sequence Synthetic primer 262gctgaagctt tcaacgtgtt cttgatgatc 3026327DNAArtificial SequenceDescription of Artificial Sequence Synthetic primer 263aagcgtcgac tttatgcacc aaaagag 2726429DNAArtificial SequenceDescription of Artificial Sequence Synthetic primer 264aatgctcgag tatctccatg catgattac 2926530DNAArtificial SequenceDescription of Artificial Sequence Synthetic primer 265gctgctcgag tcaacgtgtt cttgatgatc 3026626DNAArtificial SequenceDescription of Artificial Sequence Synthetic primer 266agaagtcgac cacaatacta tggcgc 2626727DNAArtificial SequenceDescription of Artificial Sequence Synthetic primer 267taggctcgag catacttaat attatac 2726828DNAArtificial SequenceDescription of Artificial Sequence Synthetic primer 268cttgctcgag tcagcgtcgt tggagtcg 2826926DNAArtificial SequenceDescription of Artificial Sequence Synthetic primer 269agaaaagctt cacaatacta tggcgc 2627027DNAArtificial SequenceDescription of Artificial Sequence Synthetic primer 270tagaagcttg catacttaat attatac 2727128DNAArtificial SequenceDescription of Artificial Sequence Synthetic primer 271cttgaagctt tcagcgtcgt tgaggtcg 28272232PRTArtificial SequenceDescription of Artificial Sequence Synthetic polypeptide 272Met Ser Pro Ile Leu Gly Tyr Trp Lys Ile Lys Gly Leu Val Gln Pro1 5 10 15Thr Arg Leu Leu Leu Glu Tyr Leu Glu Glu Lys Tyr Glu Glu His Leu 20 25 30Tyr Glu Arg Asp Glu Gly Asp Lys Trp Arg Asn Lys Lys Phe Glu Leu 35 40 45Gly Leu Glu Phe Pro Asn Leu Pro Tyr Tyr Ile Asp Gly Asp Val Lys 50 55 60Leu Thr Gln Ser Met Ala Ile Ile Arg Tyr Ile Ala Asp Lys His Asn65 70 75 80Met Leu Gly Gly Cys Pro Lys Glu Arg Ala Glu Ile Ser Met Leu Glu 85 90 95Gly Ala Val Leu Asp Ile Arg Tyr Gly Val Ser Arg Ile Ala Tyr Ser 100 105 110Lys Asp Phe Glu Thr Leu Lys Val Asp Phe Leu Ser Lys Leu Pro Glu 115 120 125Met Leu Lys Met Phe Glu Asp Arg Leu Cys His Lys Thr Tyr Leu Asn 130 135 140Gly Asp His Val Thr His Pro Asp Phe Met Leu Tyr Asp Ala Leu Asp145 150 155 160Val Val Leu Tyr Met Asp Pro Met Cys Leu Asp Ala Phe Pro Lys Leu 165 170 175Val Cys Phe Lys Lys Arg Ile Glu Ala Ile Pro Gln Ile Asp Lys Tyr 180 185 190Leu Lys Ser Ser Lys Tyr Ile Ala Trp Pro Leu Gln Gly Trp Gln Ala 195 200 205Thr Phe Gly Gly Gly Asp His Pro Pro Lys Ser Asp Leu Ile Glu Gly 210 215 220Arg Gly Ile Pro Gly Asn Ser Ser225 23027324DNAArtificial SequenceDescription of Artificial Sequence Synthetic primer 273aatggggatc cagctcatta aagg 2427424DNAArtificial SequenceDescription of Artificial Sequence Synthetic primer 274atacatactt gtggaattcg ccac 2427526DNAArtificial SequenceDescription of Artificial Sequence Synthetic primer 275cacggatccc ttctgagttg aaaggc 2627630DNAArtificial SequenceDescription of Artificial Sequence Synthetic primer 276tatgaattcc atctggatca aaaggcaatg 3027730DNAArtificial SequenceDescription of Artificial Sequence Synthetic primer 277cagggatcca aagagttgaa attcacaagc 3027827DNAArtificial SequenceDescription of Artificial Sequence Synthetic primer 278acggaattct gcagcgactg ccgcgtc 2727923DNAArtificial SequenceDescription of Artificial Sequence Synthetic primer 279aggatccaga tgtcctacat ccc 2328023DNAArtificial SequenceDescription of Artificial Sequence Synthetic primer 280ggaattcatg gactgctgca cgg 2328128DNAArtificial SequenceDescription of Artificial Sequence Synthetic primer 281agagaattct cgagatgtcc tacatccc 2828227DNAArtificial SequenceDescription of Artificial Sequence Synthetic primer 282tgggaattcc taggacagca tggactg 2728325DNAArtificial SequenceDescription of Artificial Sequence Synthetic primer 283ctaggatccg ggccagccgg tcacc 2528429DNAArtificial SequenceDescription of Artificial Sequence Synthetic primer 284gacggatccc cctgctgcac ggccttctg 2928529DNAArtificial SequenceDescription of Artificial Sequence Synthetic primer 285gacgaattcc cctgctgcac ggccttctg 2928625DNAArtificial SequenceDescription of Artificial Sequence Synthetic primer 286ctagaattcg ggccagccgg tcacc 2528788PRTArtificial SequenceDescription of Artificial Sequence Synthetic polypeptide 287Gly Ile Gln Leu Ile Lys Gly Pro Lys Gly Leu Gly Phe Ser Ile Ala1 5 10 15Gly Gly Val Gly Asn Gln His Ile Pro Gly Asp Asn Ser Ile Tyr Val 20 25 30Thr Lys Ile Ile Glu Gly Gly Ala Ala His Lys Asp Gly Lys Leu Gln 35 40 45Ile Gly Asp Lys Leu Leu Ala Val Asn Asn Val Cys Leu Glu Glu Val 50 55 60Thr His Glu Glu Ala Val Thr Ala Leu Lys Asn Thr Ser Asp Phe Val65 70 75 80Tyr Leu Lys Val Ala Asn Ser Ser 85288108PRTArtificial SequenceDescription of Artificial Sequence Synthetic polypeptide 288Gly Ile Pro Ser Glu Leu Lys Gly Lys Phe Ile His Thr Lys Leu Arg1 5 10 15Lys Ser Ser Arg Gly Phe Gly Phe Thr Val Val Gly Gly Asp Glu Pro 20 25 30Asp Glu Phe Leu Gln Ile Lys Ser Leu Val Leu Asp Gly Pro Ala Ala 35 40 45Leu Asp Gly Lys Met Glu Thr Gly Asp Val Ile Val Ser Val Asn Asp 50 55 60Thr Cys Val Leu Gly His Thr His Ala Gln Val Val Lys Ile Phe Gln65 70 75 80Ser Ile Pro Ile Gly Ala Ser Val Asp Leu Glu Leu Cys Arg Gly Tyr 85 90 95Pro Leu Pro Phe Asp Pro Asp Gly Ile His Arg Asp 100 105289107PRTArtificial SequenceDescription of Artificial Sequence Synthetic polypeptide 289Gly Ile Gln Arg Val Glu Ile His Lys Leu Arg Gln Gly Glu Asn Leu1 5 10 15Ile Leu Gly Phe Ser Ile Gly Gly Gly Ile Asp Gln Asp Pro Ser Gln 20 25 30Asn Pro Phe Ser Glu Asp Lys Thr Asp Lys Gly Ile Tyr Val Thr Arg 35 40 45Val Ser Glu Gly Gly Pro Ala Glu Ile Ala Gly Leu Gln Ile Gly Asp 50 55 60Lys Ile Met Gln Val Asn Gly Trp Asp Met Thr Met Val Thr His Asp65 70 75 80Gln Ala Arg Lys Arg Leu Thr Lys Arg Ser Glu Glu Val Val Arg Leu 85 90 95Leu Val Thr Arg Gln Ser Leu Gln Asn Ser Ser 100 105290128PRTArtificial SequenceDescription of Artificial Sequence Synthetic polypeptide 290Gly Ile Gln Met Ser Tyr Ile Pro Gly Gln Pro Val Thr Ala Val Val1 5 10 15Gln Arg Val Glu Ile His Lys Leu Arg Gln Gly Glu Asn Leu Ile Leu 20 25 30Gly Phe Ser Ile Gly Gly Gly Ile Asp Gln Asp Pro Ser Gln Asn Pro 35 40 45Phe Ser Glu Asp Lys Thr Asp Lys Gly Ile Tyr Val Thr Arg Val Ser 50 55 60Glu Gly Gly Pro Ala Glu Ile Ala Gly Leu Gln Ile Gly Asp Lys Ile65 70 75 80Met Gln Val Asn Gly Trp Asp Met Thr Met Val Thr His Asp Gln Ala 85 90 95Arg Lys Arg Leu Thr Lys Arg Ser Glu Glu Val Val Arg Leu Leu Val 100 105 110Thr Arg Gln Ser Leu Gln Lys Ala Val Gln Gln Ser Met Asn Ser Ser 115 120 125291129PRTArtificial SequenceDescription of Artificial Sequence Synthetic polypeptide 291Ala Gly Ile Leu Glu Met Ser Tyr Ile Pro Gly Gln Pro Val Thr Ala1 5 10 15Val Val Gln Arg Val Glu Ile His Lys Leu Arg Gln Gly Glu Asn Leu 20 25 30Ile Leu Gly Phe Ser Ile Gly Gly Gly Ile Asp Gln Asp Pro Ser Gln 35 40 45Asn Pro Phe Ser Glu Asp Lys Thr Asp Lys Gly Ile Tyr Val Thr Arg 50 55 60Val Ser Glu Gly Gly Pro Ala Glu Ile Ala Gly Leu Gln Ile Gly Asp65 70 75 80Lys Ile Met Gln Val Asn Gly Trp Asp Met Thr Met Val Thr His Asp 85 90 95Gln Ala Arg Lys Arg Leu Thr Lys Arg Ser Glu Glu Val Val Arg Leu 100 105 110Leu Val Thr Arg Gln Ser Leu Gln Lys Ala Val Gln Gln Ser Met Leu 115 120 125Ser292122PRTArtificial SequenceDescription of Artificial Sequence Synthetic polypeptide 292Ala Asp Pro Gly Gln Pro Val Thr Ala Val Val Gln Arg Val Glu Ile1 5 10 15His Lys Leu Arg Gln Gly Glu Asn Leu Ile Leu Gly Phe Ser Ile Gly 20 25 30Gly Gly Ile Asp Gln Asp Pro Ser Gln Asn Pro Phe Ser Glu Asp Lys 35 40 45Thr Asp Lys Gly Ile Tyr Val Thr Arg Val Ser Glu Gly Gly Pro Ala 50 55 60Glu Ile Ala Gly Leu Gln Ile Gly Asp Lys Ile Met Gln Val Asn Gly65 70 75 80Trp Asp Met Thr Met Val Thr His Asp Gln Ala Arg Lys Arg Leu Thr 85 90 95Lys Arg Ser Glu Glu Val Val Arg Leu Leu Val Thr Arg Gln Ser Leu 100 105 110Gln Lys Ala Val Gln Gln Ser Asp Pro Glu 115 12029372PRTHomo sapiens 293Arg Lys Ser Ser Arg Gly Phe Gly Phe Thr Val Val Gly Gly Asp Glu1 5 10 15Pro Asp Glu Phe Leu Gln Ile Lys Ser Leu Val Leu Asp Gly Pro Ala 20 25 30Ala Leu Asp Gly Lys Met Glu Thr Gly Asp Val Ile Val Ser Val Asn 35 40 45Asp Thr Cys Val Leu Gly His Thr His Ala Gln Val Val Lys Ile Phe 50 55 60Gln Ser Ile Pro Ile Gly Ala Ser65 7029476PRTHomo sapiens 294Phe Ile His Thr Lys Leu Arg Lys Ser Ser Arg Gly Phe Gly Phe Thr1 5 10 15Val Val Gly Gly Asp Glu Pro Asp Glu Phe Leu Gln Ile Lys Ser Leu 20 25 30Val Leu Asp Gly Pro Ala Ala Leu Asp Gly Lys Met Glu Thr Gly Asp 35 40 45Val Ile Val Ser Val Asn Asp Thr Cys Val Leu Gly His Thr His Ala 50 55 60Gln Val Val Lys Ile Phe Gln Ser Ile Pro Ile Gly65 70 7529585PRTHomo sapiens 295Phe Ile His Thr Lys Leu Arg Lys Ser Ser Arg Gly Phe Gly Phe Thr1 5 10 15Val Val Gly Gly Asp Glu Pro Asp Glu Phe Leu Gln Ile Lys Ser Leu 20 25 30Val Leu Asp Gly Pro Ala Ala Leu Asp Gly Lys Met Glu Thr Gly Asp 35 40 45Val Ile Val Ser Val Asn Asp Thr Cys Val Leu Gly His Thr His Ala 50 55 60Gln Val Val Lys Ile Phe Gln Ser Ile Pro Ile Gly Ala Ser Val Asp65 70 75 80Leu Glu Leu Cys Arg 8529678PRTHomo sapiens 296Lys Ser Ser Arg Gly Phe Gly Phe Thr Val Val Gly Gly Asp Glu Pro1 5 10 15Asp Glu Phe Leu Gln Ile Lys Ser Leu Val Leu Asp Gly Pro Ala Ala 20 25 30Leu Asp Gly Lys Met Glu Thr Gly Asp Val Ile Val Ser Val Asn Asp 35 40 45Thr Cys Val Leu Gly His Thr His Ala Gln Val Val Lys Ile Phe Gln 50 55 60Ser Ile Pro Ile Gly Ala Ser Val Asp Leu Glu Leu Cys Arg65 70 7529788PRTHomo sapiens 297Phe Ile His Thr Lys Leu Arg Lys Ser Ser Arg Gly Phe Gly Phe Thr1 5 10 15Val Val Gly Gly Asp Glu Pro Asp Glu Phe Leu Gln Ile Lys Ser Leu 20 25 30Val Leu Asp Gly Pro Ala Ala Leu Asp Gly Lys Met Glu Thr Gly Asp 35 40 45Val Ile Val Ser Val Asn Asp Thr Cys Val Leu Gly His Thr His Ala 50 55 60Gln Val Val Lys Ile Phe Gln Ser Ile Pro Ile Gly Ala Ser Val Asp65 70 75 80Leu Glu Leu Cys Arg Gly Tyr Pro 8529888PRTHomo sapiens 298Lys Gly Lys Phe Ile His Thr Lys Leu Arg Lys Ser Ser Arg Gly Phe1 5 10 15Gly Phe Thr Val Val Gly Gly Asp Glu Pro Asp Glu Phe Leu Gln Ile 20 25 30Lys Ser Leu Val Leu Asp Gly Pro Ala Ala Leu Asp Gly Lys Met Glu 35 40 45Thr Gly Asp Val Ile Val Ser Val Asn Asp Thr Cys Val Leu Gly His 50 55 60Thr His Ala Gln Val Val Lys Ile Phe Gln Ser Ile Pro Ile Gly Ala65 70 75 80Ser Val Asp Leu Glu Leu Cys Arg 8529981PRTHomo sapiens 299Lys Gly Lys Phe Ile His Thr Lys Leu Arg Lys Ser Ser Arg Gly Phe1 5 10 15Gly Phe Thr Val Val Gly Gly Asp Glu Pro Asp Glu Phe Leu Gln Ile 20 25 30Lys Ser Leu Val Leu Asp Gly Pro Ala Ala Leu Asp Gly Lys Met Glu 35 40 45Thr Gly Asp Val Ile Val Ser Val Asn Asp Thr Cys Val Leu Gly His 50 55

60Thr His Ala Gln Val Val Lys Ile Phe Gln Ser Ile Pro Ile Gly Ala65 70 75 80Ser30094PRTHomo sapiens 300Glu Leu Lys Gly Lys Phe Ile His Thr Lys Leu Arg Lys Ser Ser Arg1 5 10 15Gly Phe Gly Phe Thr Val Val Gly Gly Asp Glu Pro Asp Glu Phe Leu 20 25 30Gln Ile Lys Ser Leu Val Leu Asp Gly Pro Ala Ala Leu Asp Gly Lys 35 40 45Met Glu Thr Gly Asp Val Ile Val Ser Val Asn Asp Thr Cys Val Leu 50 55 60Gly His Thr His Ala Gln Val Val Lys Ile Phe Gln Ser Ile Pro Ile65 70 75 80Gly Ala Ser Val Asp Leu Glu Leu Cys Arg Gly Tyr Pro Leu 85 9030199PRTHomo sapiens 301Ser Glu Leu Lys Gly Lys Phe Ile His Thr Lys Leu Arg Lys Ser Ser1 5 10 15Arg Gly Phe Gly Phe Thr Val Val Gly Gly Asp Glu Pro Asp Glu Phe 20 25 30Leu Gln Ile Lys Ser Leu Val Leu Asp Gly Pro Ala Ala Leu Asp Gly 35 40 45Lys Met Glu Thr Gly Asp Val Ile Val Ser Val Asn Asp Thr Cys Val 50 55 60Leu Gly His Thr His Ala Gln Val Val Lys Ile Phe Gln Ser Ile Pro65 70 75 80Ile Gly Ala Ser Val Asp Leu Glu Leu Cys Arg Gly Tyr Pro Leu Pro 85 90 95Phe Asp Pro30272PRTArtificial SequenceDescription of Artificial Sequence Synthetic polypeptide 302Arg Lys Ser Ala Arg Gly Phe Gly Phe Thr Val Val Gly Gly Asp Glu1 5 10 15Pro Asp Glu Phe Leu Gln Ile Lys Ser Leu Val Leu Asp Gly Pro Ala 20 25 30Ala Leu Asp Gly Lys Met Glu Thr Gly Asp Val Ile Val Ser Val Asn 35 40 45Asp Thr Cys Val Leu Gly His Thr His Ala Gln Val Val Lys Ile Phe 50 55 60Gln Ser Ile Pro Ile Gly Ala Ser65 7030372PRTArtificial SequenceDescription of Artificial Sequence Synthetic polypeptide 303Arg Lys Ser Ser Arg Gly Phe Gly Phe Thr Val Val Gly Gly Glu Glu1 5 10 15Pro Asp Glu Phe Leu Gln Ile Lys Ser Leu Val Leu Asp Gly Pro Ala 20 25 30Ala Leu Asp Gly Lys Met Glu Thr Gly Asp Val Ile Val Ser Val Asn 35 40 45Asp Thr Cys Val Leu Gly His Thr His Ala Gln Val Val Lys Ile Phe 50 55 60Gln Ser Ile Pro Ile Gly Ala Ser65 7030472PRTArtificial SequenceDescription of Artificial Sequence Synthetic polypeptide 304Arg Lys Ser Ser Arg Gly Phe Gly Phe Thr Val Val Gly Gly Asp Glu1 5 10 15Pro Asp Glu Phe Leu Gln Leu Lys Ser Leu Val Leu Asp Gly Pro Ala 20 25 30Ala Leu Asp Gly Lys Met Glu Thr Gly Asp Val Ile Val Ser Val Asn 35 40 45Asp Thr Cys Val Leu Gly His Thr His Ala Gln Val Val Lys Ile Phe 50 55 60Gln Ser Ile Pro Ile Gly Ala Ser65 7030572PRTArtificial SequenceDescription of Artificial Sequence Synthetic polypeptide 305Arg Lys Ser Ser Arg Gly Phe Gly Phe Thr Val Val Gly Gly Asp Glu1 5 10 15Pro Asp Glu Phe Leu Gln Ile Lys Ser Leu Val Leu Asp Gly Pro Ala 20 25 30Ser Leu Asp Gly Lys Met Glu Thr Gly Asp Val Ile Val Ser Val Asn 35 40 45Asp Thr Cys Val Leu Gly His Thr His Ala Gln Val Val Lys Ile Phe 50 55 60Gln Ser Ile Pro Ile Gly Ala Ser65 7030672PRTArtificial SequenceDescription of Artificial Sequence Synthetic polypeptide 306Arg Lys Ser Ser Arg Gly Phe Gly Phe Thr Val Val Gly Gly Asp Glu1 5 10 15Pro Asp Glu Phe Leu Gln Ile Lys Ser Leu Val Leu Asp Gly Pro Ala 20 25 30Ala Leu Asp Gly Arg Met Glu Thr Gly Asp Val Ile Val Ser Val Asn 35 40 45Asp Thr Cys Val Leu Gly His Thr His Ala Gln Val Val Lys Ile Phe 50 55 60Gln Ser Ile Pro Ile Gly Ala Ser65 7030772PRTArtificial SequenceDescription of Artificial Sequence Synthetic polypeptide 307Arg Lys Ser Ser Arg Gly Phe Gly Phe Thr Val Val Gly Gly Asp Glu1 5 10 15Pro Asp Glu Phe Leu Gln Ile Lys Ser Leu Val Leu Asp Gly Pro Ala 20 25 30Ala Leu Asp Gly Lys Met Glu Thr Gly Asp Val Ile Val Ala Val Asn 35 40 45Asp Thr Cys Val Leu Gly His Thr His Ala Gln Val Val Lys Ile Phe 50 55 60Gln Ser Ile Pro Ile Gly Ala Ser65 7030872PRTArtificial SequenceDescription of Artificial Sequence Synthetic polypeptide 308Arg Lys Ser Ser Arg Gly Phe Gly Phe Thr Val Val Gly Gly Asp Glu1 5 10 15Pro Asp Glu Phe Leu Gln Ile Lys Ser Leu Val Leu Asp Gly Pro Ala 20 25 30Ala Leu Asp Gly Lys Met Glu Thr Gly Asp Val Ile Val Ser Val Asn 35 40 45Glu Thr Cys Val Leu Gly His Thr His Ala Gln Val Val Lys Ile Phe 50 55 60Gln Ser Ile Pro Ile Gly Ala Ser65 7030972PRTArtificial SequenceDescription of Artificial Sequence Synthetic polypeptide 309Arg Lys Ser Ser Arg Gly Phe Gly Phe Thr Val Val Gly Gly Asp Glu1 5 10 15Pro Asp Glu Phe Leu Gln Ile Lys Ser Leu Val Leu Asp Gly Pro Ala 20 25 30Ala Leu Asp Gly Lys Met Glu Thr Gly Asp Val Ile Val Ser Val Asn 35 40 45Asp Thr Cys Leu Leu Gly His Thr His Ala Gln Val Val Lys Ile Phe 50 55 60Gln Ser Ile Pro Ile Gly Ala Ser65 7031072PRTArtificial SequenceDescription of Artificial Sequence Synthetic polypeptide 310Arg Lys Ser Ser Arg Gly Phe Gly Phe Thr Val Val Gly Gly Asp Glu1 5 10 15Pro Asp Glu Phe Leu Gln Ile Lys Ser Leu Val Leu Asp Gly Pro Ala 20 25 30Ala Leu Asp Gly Lys Met Glu Thr Gly Asp Val Ile Val Ser Val Asn 35 40 45Asp Thr Cys Val Leu Gly His Thr His Ser Gln Val Val Lys Ile Phe 50 55 60Gln Ser Ile Pro Ile Gly Ala Ser65 7031172PRTArtificial SequenceDescription of Artificial Sequence Synthetic polypeptide 311Arg Lys Ser Ser Arg Gly Phe Gly Phe Thr Val Val Gly Gly Asp Glu1 5 10 15Pro Asp Glu Phe Leu Gln Ile Lys Ser Leu Val Leu Asp Gly Pro Ala 20 25 30Ala Leu Asp Gly Lys Met Glu Thr Gly Asp Val Ile Val Ser Val Asn 35 40 45Asp Thr Cys Val Leu Gly His Thr His Ala Gln Val Val Lys Leu Phe 50 55 60Gln Ser Ile Pro Ile Gly Ala Ser65 7031272PRTArtificial SequenceDescription of Artificial Sequence Synthetic polypeptide 312Arg Lys Ser Ser Arg Gly Phe Gly Phe Thr Val Val Gly Gly Asp Glu1 5 10 15Pro Asp Glu Phe Leu Gln Ile Lys Ser Leu Val Leu Asp Gly Pro Ala 20 25 30Ala Leu Asp Gly Lys Met Glu Thr Gly Asp Val Ile Val Ser Val Asn 35 40 45Asp Thr Cys Val Leu Gly His Thr His Ala Gln Val Val Lys Ile Phe 50 55 60Gln Ser Ile Pro Ile Gly Ser Ser65 7031372PRTArtificial SequenceDescription of Artificial Sequence Synthetic polypeptide 313Arg Lys Ser Thr Arg Gly Phe Gly Phe Thr Val Val Gly Gly Asp Glu1 5 10 15Pro Asp Glu Phe Leu Gln Ile Lys Ser Leu Val Leu Asp Gly Pro Ala 20 25 30Ala Leu Asp Gly Lys Met Glu Thr Gly Asp Val Ile Val Ser Val Asn 35 40 45Asp Thr Cys Val Leu Gly His Thr His Ala Gln Val Val Lys Ile Phe 50 55 60Gln Ser Ile Pro Ile Gly Ala Ser65 7031472PRTArtificial SequenceDescription of Artificial Sequence Synthetic polypeptide 314Arg Lys Ser Ser Arg Gly Phe Gly Phe Thr Val Val Gly Gly Asp Glu1 5 10 15Pro Gly Glu Phe Leu Gln Ile Lys Ser Leu Val Leu Asp Gly Pro Ala 20 25 30Ala Leu Asp Gly Lys Met Glu Thr Gly Asp Val Ile Val Ser Val Asn 35 40 45Asp Thr Cys Val Leu Gly His Thr His Ala Gln Val Val Lys Ile Phe 50 55 60Gln Ser Ile Pro Ile Gly Ala Ser65 7031572PRTArtificial SequenceDescription of Artificial Sequence Synthetic polypeptide 315Arg Lys Ser Ser Arg Gly Phe Gly Phe Thr Val Val Gly Gly Asp Glu1 5 10 15Pro Asp Glu Phe Leu Gln Ile Lys Ser Leu Ala Leu Asp Gly Pro Ala 20 25 30Ala Leu Asp Gly Lys Met Glu Thr Gly Asp Val Ile Val Ser Val Asn 35 40 45Asp Thr Cys Val Leu Gly His Thr His Ala Gln Val Val Lys Ile Phe 50 55 60Gln Ser Ile Pro Ile Gly Ala Ser65 7031672PRTArtificial SequenceDescription of Artificial Sequence Synthetic polypeptide 316Arg Lys Ser Ser Arg Gly Phe Gly Phe Thr Val Val Gly Gly Asp Glu1 5 10 15Pro Asp Glu Phe Leu Gln Ile Lys Ser Leu Val Leu Asp Gly Pro Ala 20 25 30Ala Leu Ala Gly Lys Met Glu Thr Gly Asp Val Ile Val Ser Val Asn 35 40 45Asp Thr Cys Val Leu Gly His Thr His Ala Gln Val Val Lys Ile Phe 50 55 60Gln Ser Ile Pro Ile Gly Ala Ser65 7031772PRTArtificial SequenceDescription of Artificial Sequence Synthetic polypeptide 317Arg Lys Ser Ser Arg Gly Phe Gly Phe Thr Val Val Gly Gly Asp Glu1 5 10 15Pro Asp Glu Phe Leu Gln Ile Lys Ser Leu Val Leu Asp Gly Pro Ala 20 25 30Ala Leu Asp Gly Lys Met Glu Thr Ala Asp Val Ile Val Ser Val Asn 35 40 45Asp Thr Cys Val Leu Gly His Thr His Ala Gln Val Val Lys Ile Phe 50 55 60Gln Ser Ile Pro Ile Gly Ala Ser65 7031872PRTArtificial SequenceDescription of Artificial Sequence Synthetic polypeptide 318Arg Lys Ser Ser Arg Gly Phe Gly Phe Thr Val Val Gly Gly Asp Glu1 5 10 15Pro Asp Glu Phe Leu Gln Ile Lys Ser Leu Val Leu Asp Gly Pro Ala 20 25 30Ala Leu Asp Gly Lys Met Glu Thr Gly Asp Val Ile Val Ser Val Asn 35 40 45Asp Thr Ala Val Leu Gly His Thr His Ala Gln Val Val Lys Ile Phe 50 55 60Gln Ser Ile Pro Ile Gly Ala Ser65 7031972PRTArtificial SequenceDescription of Artificial Sequence Synthetic polypeptide 319Arg Lys Ser Ser Arg Gly Phe Gly Phe Thr Val Val Gly Gly Asp Glu1 5 10 15Pro Asp Glu Phe Leu Gln Ile Lys Ser Leu Val Leu Asp Gly Pro Ala 20 25 30Ala Leu Asp Gly Lys Met Glu Thr Gly Asp Val Ile Val Ser Val Asn 35 40 45Asp Thr Cys Val Leu Gly His Thr His Ala Gln Ala Val Lys Ile Phe 50 55 60Gln Ser Ile Pro Ile Gly Ala Ser65 7032072PRTArtificial SequenceDescription of Artificial Sequence Synthetic polypeptide 320Arg Lys Ser Ser Arg Gly Phe Gly Phe Thr Val Val Gly Gly Asp Glu1 5 10 15Pro Asp Glu Phe Leu Gln Ile Lys Ser Leu Val Leu Asp Gly Pro Ala 20 25 30Ala Leu Asp Gly Lys Met Glu Thr Gly Asp Val Ile Val Ser Val Asn 35 40 45Asp Thr Cys Val Leu Gly His Thr His Ala Gln Val Val Lys Ile Phe 50 55 60Gln Ser Ile Ala Ile Gly Ala Ser65 7032172PRTArtificial SequenceDescription of Artificial Sequence Synthetic polypeptide 321Arg Lys Ser Ser Arg Gly Phe Gly Phe Thr Val Val Gly Gly Asp Glu1 5 10 15Pro Asp Glu Phe Leu Gln Ile Lys Ser Leu Val Leu Asp Gly Pro Ala 20 25 30Ala Leu Asp Gly Lys Met Glu Thr Gly Asp Val Ile Val Ser Val Asn 35 40 45Asp Thr Cys Val Leu Gly His Thr His Ala Gln Val Val Lys Ile Phe 50 55 60Gln Ser Ile Pro Ile Gly Ala Ala65 7032272PRTArtificial SequenceDescription of Artificial Sequence Synthetic polypeptide 322Arg Lys Ser Ser Ser Gly Phe Gly Phe Thr Val Val Gly Gly Asp Glu1 5 10 15Pro Asp Glu Phe Leu Gln Ile Lys Ser Leu Val Leu Asp Gly Pro Ala 20 25 30Ala Leu Asp Gly Lys Met Glu Thr Gly Asp Val Ile Val Ser Val Asn 35 40 45Asp Thr Cys Val Leu Gly His Thr His Ala Gln Val Val Lys Ile Phe 50 55 60Gln Ser Ile Pro Ile Gly Ala Ser65 7032372PRTArtificial SequenceDescription of Artificial Sequence Synthetic polypeptide 323Arg Lys Ser Ser Arg Gly Phe Gly Phe Thr Val Val Gly Gly Leu Glu1 5 10 15Pro Asp Glu Phe Leu Gln Ile Lys Ser Leu Val Leu Asp Gly Pro Ala 20 25 30Ala Leu Asp Gly Lys Met Glu Thr Gly Asp Val Ile Val Ser Val Asn 35 40 45Asp Thr Cys Val Leu Gly His Thr His Ala Gln Val Val Lys Ile Phe 50 55 60Gln Ser Ile Pro Ile Gly Ala Ser65 7032472PRTArtificial SequenceDescription of Artificial Sequence Synthetic polypeptide 324Arg Lys Ser Ser Arg Gly Phe Gly Phe Thr Val Val Gly Gly Asp Glu1 5 10 15Pro Asp Glu Phe Leu Gln Ile Thr Ser Leu Val Leu Asp Gly Pro Ala 20 25 30Ala Leu Asp Gly Lys Met Glu Thr Gly Asp Val Ile Val Ser Val Asn 35 40 45Asp Thr Cys Val Leu Gly His Thr His Ala Gln Val Val Lys Ile Phe 50 55 60Gln Ser Ile Pro Ile Gly Ala Ser65 7032572PRTArtificial SequenceDescription of Artificial Sequence Synthetic polypeptide 325Arg Lys Ser Ser Arg Gly Phe Gly Phe Thr Val Val Gly Gly Asp Glu1 5 10 15Pro Asp Glu Phe Leu Gln Ile Lys Ser Leu Val Leu Asp Gly Pro Ala 20 25 30Gly Leu Asp Gly Lys Met Glu Thr Gly Asp Val Ile Val Ser Val Asn 35 40 45Asp Thr Cys Val Leu Gly His Thr His Ala Gln Val Val Lys Ile Phe 50 55 60Gln Ser Ile Pro Ile Gly Ala Ser65 7032672PRTArtificial SequenceDescription of Artificial Sequence Synthetic polypeptide 326Arg Lys Ser Ser Arg Gly Phe Gly Phe Thr Val Val Gly Gly Asp Glu1 5 10 15Pro Asp Glu Phe Leu Gln Ile Lys Ser Leu Val Leu Asp Gly Pro Ala 20 25 30Ala Leu Asp Gly Lys Met Glu Thr Ser Asp Val Ile Val Ser Val Asn 35 40 45Asp Thr Cys Val Leu Gly His Thr His Ala Gln Val Val Lys Ile Phe 50 55 60Gln Ser Ile Pro Ile Gly Ala Ser65 7032772PRTArtificial SequenceDescription of Artificial Sequence Synthetic polypeptide 327Arg Lys Ser Ser Arg Gly Phe Gly Phe Thr Val Val Gly Gly Asp Glu1 5 10 15Pro Asp Glu Phe Leu Gln Ile Lys Ser Leu Val Leu Asp Gly Pro Ala 20 25 30Ala Leu Asp Gly Lys Met Glu Thr Gly Asp Val Ile Val Ser Val Lys 35 40 45Asp Thr Cys Val Leu Gly His Thr His Ala Gln Val Val Lys Ile Phe 50 55 60Gln Ser Ile Pro Ile Gly Ala Ser65 7032872PRTArtificial SequenceDescription of Artificial Sequence Synthetic polypeptide 328Arg Lys Ser Ser Arg Gly Phe Gly Phe Thr Val Val Gly Gly Asp Glu1 5 10 15Pro Asp Glu Phe Leu Gln Ile Lys Ser Leu Val Leu Asp Gly Pro Ala 20 25 30Ala Leu Asp Gly Lys Met Glu Thr Gly Asp Val Ile Val Ser Val Asn 35 40 45Asp Thr Cys Val Leu Phe His Thr His Ala Gln Val Val Lys Ile Phe 50 55 60Gln Ser Ile Pro Ile Gly Ala Ser65 7032972PRTArtificial SequenceDescription of Artificial Sequence Synthetic polypeptide 329Arg Lys Ser Ser Arg Gly Phe Gly Phe Thr Val Val Gly Gly Asp Glu1 5 10 15Pro Asp Glu Phe Leu Gln Ile Lys Ser Leu Val Leu Asp Gly Pro Ala 20 25

30Ala Leu Asp Gly Lys Met Glu Thr Gly Asp Val Ile Val Ser Val Asn 35 40 45Asp Thr Cys Val Leu Gly His Thr His Ala Gln Asn Val Lys Ile Phe 50 55 60Gln Ser Ile Pro Ile Gly Ala Ser65 7033072PRTArtificial SequenceDescription of Artificial Sequence Synthetic polypeptide 330Arg Lys Ser Ser Arg Gly Phe Gly Phe Thr Val Val Gly Gly Asp Glu1 5 10 15Pro Asp Glu Phe Leu Gln Ile Lys Ser Leu Val Leu Asp Gly Pro Ala 20 25 30Ala Leu Asp Gly Lys Met Glu Thr Gly Asp Val Ile Val Ser Val Asn 35 40 45Asp Thr Cys Val Leu Gly His Thr His Ala Gln Val Val Lys Ile Phe 50 55 60Gln Ser Ile Pro Ile Ser Ala Ser65 703315PRTArtificial SequenceDescription of Artificial Sequence Synthetic peptide 331Gly Ile Pro Gly Asn1 5

Claims

1. A method of detecting the presence of an oncogenic HPV E6 protein in a sample, said method comprising: contacting a sample suspected of containing an oncogenic HPV E6 protein with a PDZ domain polypeptide; and detecting any binding of said oncogenic HPV E6 protein in said sample to said PDZ domain polypeptide; wherein binding of said oncogenic HPV E6 protein to said PDZ domain polypeptide indicates the presence of an oncogenic HPV E6 protein in said sample.

2. The method of claim 1, wherein said PDZ domain polypeptide comprises the amino acids sequence of Magi-I PDZ domain 2.

3. The method of claim 1, wherein said PDZ domain peptide binds to HPV E6 protein encoded by HPV strains 16, 18 and 45.

4. The method of claim 1, wherein sample is contacted with multiple PDZ domain polypeptides.

5. The method of claim 1, wherein said PDZ protein is a fusion protein.

6. A method for determining if a subject is infected with an oncogenic strain of HPV, said method comprising: detecting the presence of oncogenic HPV E6 protein in a sample from said subject using an oncogenic HPV E6 protein-binding PDZ protein, wherein the presence of oncogenic HPV E6 protein indicates that the subject is infected with an oncogenic strain of HPV.

7. The method of claim 6, wherein said detecting step further comprises detecting the presence of said oncogenic HPV E6 protein using an antibody that specifically binds to said oncogenic HPV E6 protein.

8. The method of claim 6, wherein said sample is a cervical scrape, biopsy, or lavage.

9. The method of claim 8, wherein said method is an ELISA or a sandwich assay.

10. The method of claim 6, wherein said sample is prepared in the presence of a proteasome inhibitor.

11. The method of claim 6, wherein said method is a performed as part of a test for cervical cancer.

Images