Patent application title: COMPOUNDS AND METHODS FOR MODULATING TMPRSS6 EXPRESSION
Inventors:
Shuling Guo (Carlsbad, CA, US)
Shuling Guo (Carlsbad, CA, US)
Mariam Aghajan (San Diego, CA, US)
Eric E. Swayze (Encinitas, CA, US)
Assignees:
Ionis Pharmaceuticals, Inc.
IPC8 Class: AC12N15113FI
USPC Class:
1 1
Class name:
Publication date: 2022-08-18
Patent application number: 20220259600
Abstract:
Disclosed herein are compositions and compounds comprising modified
oligonucleotides for modulating TMPRSS6 and modulating an iron
accumulation disease, disorder and/or condition in an individual in need
thereof. Iron accumulation diseases in an individual such as
polycythemia, hemochromatosis or .beta.-thalassemia can be treated,
ameliorated, delayed or prevented with the administration of antisense
compounds targeted to TMPRSS6.Claims:
1-36. (canceled)
37. An oligomeric compound according to the following chemical structure: ##STR00032## ##STR00033## or a salt thereof.
38. The oligomeric compound of claim 37, which is the sodium salt or the potassium salt.
39. An oligomeric compound according to the following chemical structure: ##STR00034## ##STR00035##
40. An oligomeric compound, wherein the anion form of the oligomeric compound has the following chemical structure: ##STR00036## ##STR00037##
41. An oligomeric compound comprising a modified oligonucleotide according to the following formula: THA-C6 GalNAc.sub.3 mCks Aes Gks mCds Tds Tds Tds Ads Tds Tds mCds mCds Aes Aes Aks Gk (SEQ ID NO: 77); wherein, A=an adenine nucleobase, mC=a 5-methylcytosine nucleobase, G=a guanine nucleobase, T=a thymine nucleobase, e=a 2'-MOE sugar moiety, d=a 2'-.beta.-D-deoxyribosyl sugar moiety, s=a phosphorothioate internucleoside linkage, o=a phosphodiester internucleoside linkage, k=a cEt sugar moiety, and THA-C6 GalNAc.sub.3= ##STR00038## wherein the cleavable moiety (CM) comprises a phosphodiester bond.
42. A population of oligomeric compounds of claim 37, wherein all of the phosphorothioate internucleoside linkages of the modified oligonucleotides are stereorandom.
43. A pharmaceutical composition comprising an oligomeric compound of claim 37 and a pharmaceutically acceptable diluent.
44. The pharmaceutical composition of claim 43, wherein the pharmaceutically acceptable diluent is phosphate-buffered saline (PBS) or water.
45. A population of oligomeric compounds of claim 38, wherein all of the phosphorothioate internucleoside linkages of the modified oligonucleotides are stereorandom.
46. A pharmaceutical composition comprising an oligomeric compound of claim 38 and a pharmaceutically acceptable diluent.
47. The pharmaceutical composition of claim 46, wherein the pharmaceutically acceptable diluent is phosphate-buffered saline (PBS) or water.
48. A population of oligomeric compounds of claim 39, wherein all of the phosphorothioate internucleoside linkages of the modified oligonucleotides are stereorandom.
49. A pharmaceutical composition comprising an oligomeric compound of claim 39 and a pharmaceutically acceptable diluent.
50. The pharmaceutical composition of claim 49, wherein the pharmaceutically acceptable diluent is phosphate-buffered saline (PBS) or water.
51. A population of oligomeric compounds of claim 40, wherein all of the phosphorothioate internucleoside linkages of the modified oligonucleotide are stereorandom.
52. A pharmaceutical composition comprising the oligomeric compound of claim 40 and a pharmaceutically acceptable diluent.
53. The pharmaceutical composition of claim 52, wherein the pharmaceutically acceptable diluent is phosphate-buffered saline (PBS) or water.
54. A population of oligomeric compounds of claim 41, wherein all of the phosphorothioate internucleoside linkages of the modified oligonucleotide are stereorandom.
55. A pharmaceutical composition comprising the oligomeric compound of claim 41 and a pharmaceutically acceptable diluent.
56. The pharmaceutical composition of claim 55, wherein the pharmaceutically acceptable diluent is phosphate-buffered saline (PBS) or water.
57. A method of reducing expression of TMPRSS6 in a cell comprising contacting the cell with an oligomeric compound of claim 37.
58. A method comprising administering the compound of claim 37 to a subject in need thereof.
59. The method of claim 58, wherein the subject has polycythemia, hemochromatosis or anemia.
60. The method of claim 59, wherein the anemia is .beta.-thalassemia.
61. The method of claim 59, wherein the polycythemia is polycythemia vera.
62. The method of claim 58, wherein the subject is human.
Description:
SEQUENCE LISTING
[0001] The present application is being filed along with a Sequence Listing in electronic format. The Sequence Listing is provided as a file entitled BIOL0271USC2SEQ_ST25.txt created Sep. 20, 2021, which is 148 kb in size. The information in the electronic format of the sequence listing is incorporated herein by reference in its entirety.
FIELD OF THE INVENTION
[0002] The present invention provides methods, compounds, and compositions for modulating TMPRSS6 expression for the purpose of reducing iron accumulation in an animal.
BACKGROUND OF THE INVENTION
[0003] Maintenance of iron balance in human beings is delicate because of the limited capacity of the human physiology for iron absorption and excretion (Finch, C. A. and Huebers, H. N. Engl. J. Med. 1982. 306: 1520-1528). Iron deficiency is a widespread disorder and results from any condition in which dietary iron intake does not meet the body's demands. Often, pathological blood loss contributes to negative iron balance. Iron overload is also a common condition, and may result from a genetic cause, for example, mutations of different genes of iron metabolism (Camaschella, C. Blood. 2005. 106: 3710-3717). The hepatic peptide hormone, hepcidin plays a key role in body iron metabolism as it controls iron absorption and recycling (Ganz, T. Am. Soc. Hematol. Educ. Program 2006.507: 29-35; Kemna, E. H. et al., Clin. Chem. 2007. 53: 620-628). Several proteins, including HFE (hemochromatosis protein) (Ahmad, K. A. et al., Blood Cells Mol Dis. 2002. 29: 361), transferrin receptor 2 (Kawabata, H. et al., Blood 2005. 105: 376), and hemojuvelin (Papanikolaou, G. et al., Nat. Genet. 2004. 36: 77) also regulate the body's iron levels.
[0004] Transmembrane protease, serine 6 (TMPRSS6) is a type II transmembrane serine protease and is expressed primarily in the liver (Velasco, G. et al., J. Biol. Chem. 2002. 277: 37637-37646). Mutations in TMPRSS6 have been implicated in iron deficiency anemia (Finberg, K. E. et al., Nat. Genet. 2008. 40: 569-571), where the level of hepcidin was found to be unusually elevated. A study of a human population with microcytic anemia found that loss-of-function mutations in the TMPRSS6 gene lead to overproduction of hepcidin, which, in turn, lead to defective iron absorption and utilization (Melis, M. A. et al., Hematologica 2008. 93: 1473-1479). TMPRSS6 participates in a transmembrane signaling pathway triggered by iron deficiency and suppresses diverse pathways of Hamp activation, the gene that encodes hepcidin (Du, X. et al., Science 2008. 320: 1088-1092). Heterozygous loss of TMPRSS6 in HFE.sup.-/- mice reduces systemic iron overload, while homozygous loss of TMPRSS6 in HFE.sup.-/- mice causes systemic iron deficiency and elevated hepatic expression of hepcidin (Finberg, K. E. et al., Blood 2011. 117: 4590-4599).
[0005] An example of an iron overload disorder is Hemochromatosis. Hemochromatosis (e.g. hemochromatosis type 1 or hereditary hemochromatosis) is a disorder that results in excess intestinal absorption of dietary iron from the gastrointestinal tract (Allen, K. J. et al., N. Engl. J. Med. 2008. 358: 221-230). This results in a pathological increase in total body iron stores. Excess iron accumulates in tissues and organs, particularly the liver, adrenal glands, heart, skin, gonads, joints and pancreas, and disrupt their normal function. Secondary complications, such as cirrhosis (Ramm, G. A. and Ruddell, R. G. Semin. Liver Dis. 2010. 30: 271-287), polyarthropathy (Carroll, G. J. et al., Arthritis Rheum. 2011. 63: 286-294), adrenal insufficiency, heart failure and diabetes (Huang, J. et al., Diabetes 2011. 60: 80-87) are common. Another example of an iron overload disorder is .beta.-thalassemia, where patients can develop iron overload caused by ineffective erythropoiesis or transfusions to treat .beta.-thalassemia.
[0006] To date, therapeutic strategies to treat iron overload disorders have been limited. Nucleic acid inhibitors such as siRNA and antisense oligonucleotides have been suggested or developed, but none of the compounds directly targeting TMPRSS6 (PCT Publications WO2014/076195, WO2012/135246, WO2014/190157, WO2005/0032733, WO 2013/070786 and WO2013/173635; U.S. Pat. No. 8,090,542; Schmidt et al. Blood. 2013, 121(7):1200-8) have been approved for treating iron overload disorders. Accordingly, there is an unmet need for highly potent and tolerable compounds to inhibit TMPRSS6. The invention disclosed herein relates to the discovery of novel, highly potent inhibitors of TMPRSS6 expression and their use in treatment.
[0007] All documents, or portions of documents, cited in this application, including, but not limited to, patents, patent applications, articles, books, and treatises, are hereby expressly incorporated-by-reference for the portions of the document discussed herein, as well as in their entirety.
SUMMARY OF THE INVENTION
[0008] Provided herein are compositions, compounds and methods for modulating the levels of TMPRSS6 mRNA and/or protein in an animal. Provided herein are compositions, compounds and methods for lowering TMPRSS6 levels.
[0009] Certain embodiments disclosed herein provide a compound comprising a modified oligonucleotide targeting a nucleic acid sequence encoding TMPRSS6. In certain embodiments, the compound targets a TMPRSS6 sequence as shown in the nucleobase sequences of any of SEQ ID NOs: 1-6.
[0010] Certain embodiments disclosed herein provide a compound comprising a modified oligonucleotide consisting of 12 to 30 linked nucleosides and comprising a nucleobase sequence comprising a portion of at least 8 contiguous nucleobases complementary to an equal length portion of nucleobases 3162 to 3184 of SEQ ID NO: 1, wherein the nucleobase sequence of the modified oligonucleotide is at least 80% complementary to SEQ ID NO: 1.
[0011] Certain embodiments disclosed herein provide a compound comprising a modified oligonucleotide consisting of 12 to 30 linked nucleosides and having a nucleobase sequence comprising at least 8 contiguous nucleobases of any of the nucleobase sequences of SEQ ID NOs: 23, 36, 37, 63, 77.
[0012] Certain embodiments disclosed herein provide a compound comprising a modified oligonucleotide with the following formula:
##STR00001## ##STR00002##
[0013] Certain embodiments disclosed herein provide a compound comprising a modified oligonucleotide with the following formula:
##STR00003## ##STR00004##
DETAILED DESCRIPTION OF THE INVENTION
[0014] It is to be understood that both the foregoing general description and the following detailed description are exemplary and explanatory only and are not restrictive of the invention, as claimed. Herein, the use of the singular includes the plural unless specifically stated otherwise. As used herein, the use of "or" means "and/or" unless stated otherwise. Furthermore, the use of the term "including" as well as other forms, such as "includes" and "included", is not limiting. Also, terms such as "element" or "component" encompass both elements and components comprising one unit and elements and components that comprise more than one subunit, unless specifically stated otherwise.
[0015] The section headings used herein are for organizational purposes only and are not to be construed as limiting the subject matter described. All documents, or portions of documents, cited in this application, including, but not limited to, patents, patent applications, articles, books, and treatises, are hereby expressly incorporated by reference for the portions of the document discussed herein, as well as in their entirety.
Definitions
[0016] Unless specific definitions are provided, the nomenclature utilized in connection with, and the procedures and techniques of, analytical chemistry, synthetic organic chemistry, and medicinal and pharmaceutical chemistry described herein are those well known and commonly used in the art. Standard techniques may be used for chemical synthesis, and chemical analysis. Where permitted, all patents, applications, published applications and other publications, GENBANK Accession Numbers and associated sequence information obtainable through databases such as National Center for Biotechnology Information (NCBI) and other data referred to throughout the disclosure herein are incorporated by reference for the portions of the document discussed herein, as well as in their entirety.
[0017] Unless otherwise indicated, the following terms have the following meanings:
[0018] "2'-O-methoxyethyl" (also 2'-MOE and 2'-O(CH.sub.2).sub.2--OCH.sub.3) refers to an O-methoxy-ethyl modification of the 2' position of a furosyl ring. A 2'-O-methoxyethyl modified sugar is a modified sugar.
[0019] "2'-O-methoxyethyl nucleotide" means a nucleotide comprising a 2'-O-methoxyethyl modified sugar moiety.
[0020] "5-methylcytosine" means a cytosine modified with a methyl group attached to the 5' position. A 5-methylcytosine is a modified nucleobase.
[0021] "About" means within 10% of a value. For example, if it is stated, "a marker may be increased by about 50%", it is implied that the marker may be increased between 45%-55%.
[0022] "Active pharmaceutical agent" or "Pharmaceutical agent" means the substance or substances in a pharmaceutical composition that provide a therapeutic benefit when administered to an individual. For example, in certain embodiments, an antisense oligonucleotide targeted to TMPRSS6 is an active pharmaceutical agent.
[0023] "Active target region" or"target region" means a region to which one or more active antisense compounds is targeted.
[0024] "Active antisense compounds" means antisense compounds that reduce target nucleic acid levels or protein levels.
[0025] "Administered concomitantly" refers to the co-administration of two agents in any manner in which the pharmacological effects of both are manifest in the patient time. Concomitant administration does not require that both agents be administered in a single pharmaceutical composition, in the same dosage form, or by the same route of administration. The effects of both agents need not manifest themselves at the same time. The effects need only be overlapping for a period of time and need not be coextensive.
[0026] "Administering" means providing a pharmaceutical agent to an individual, and includes, but is not limited to administering by a medical professional and self-administering.
[0027] "Agent" means an active substance that can provide a therapeutic benefit when administered to an animal. "First Agent" means a therapeutic compound provided herein. For example, a first agent is an antisense oligonucleotide targeting TMPRSS6. "Second agent" means a second therapeutic compound described herein. For example, a second agent can be a second antisense oligonucleotide targeting TMPRSS6 or a non-TMPRSS6 target. Alternatively, a second agent can be a compound other than an antisense oligonucleotide.
[0028] "Amelioration" or "ameliorate" refers to a lessening of at least one indicator, marker, sign, or symptom of an associated disease, disorder and/or condition. In certain embodiments, amelioration includes a delay or slowing in the progression of one or more indicators of a condition, disorder and/or disease. The severity of indicators may be determined by subjective or objective measures, which are known to those skilled in the art.
[0029] "Anemia" is a disease characterized by a lower than normal number of red blood cells (erythrocytes) in the blood, usually measured by a decrease in the amount of hemoglobin. The cause of anemia can include chronic inflammation, chronic kidney disease, kidney dialysis treatment, genetic (hereditary) disorders, chronic infection, acute infection, cancer and cancer treatments. Altered iron homeostasis and/or erythropoiesis in these diseases, disorders and/or conditions can also result in decreased erythrocyte production. Clinical signs of anemia include low serum iron (hypoferremia), low hemoglobin levels, low hematocrit levels, decreased red blood cells, decreased reticulocytes, increased soluble transferrin receptor and iron restricted erythropoiesis. Examples of anemia include thalassemias (i.e. .alpha.-thalassemia, .beta.-thalassemia (minor, intermedia and major) and .delta.-thalassemia), sickle cell anemia, aplastic anemia, Fanconi anemia, Diamond Blackfan anemia, Shwachman Diamond syndrome, red cell membrane disorders, glucose-6-phosphate dehydrogenase deficiency, hereditary hemorrhagic telangiectasia, hemolytic anemia, anemia of chronic disease and the like.
[0030] "Animal" refers to a human or non-human animal, including, but not limited to, mice, rats, rabbits, dogs, cats, pigs, and non-human primates, including, but not limited to, monkeys and chimpanzees.
[0031] "Antibody" refers to a molecule characterized by reacting specifically with an antigen in some way, where the antibody and the antigen are each defined in terms of the other. Antibody may refer to a complete antibody molecule or any fragment or region thereof, such as the heavy chain, the light chain, Fab region, and Fc region.
[0032] "Antisense activity" means any detectable or measurable activity attributable to the hybridization of an antisense compound to its target nucleic acid. In certain embodiments, antisense activity is a decrease in the amount or expression of a target nucleic acid or protein encoded by such target nucleic acid.
[0033] "Antisense compound" means an oligomeric compound that is capable of undergoing hybridization to a target nucleic acid through hydrogen bonding.
[0034] "Antisense inhibition" means reduction of target nucleic acid levels or target protein levels in the presence of an antisense compound complementary to a target nucleic acid compared to target nucleic acid levels or target protein levels in the absence of the antisense compound.
[0035] "Antisense oligonucleotide" means a single-stranded oligonucleotide having a nucleobase sequence that permits hybridization to a corresponding region or segment of a target nucleic acid.
[0036] "Bicyclic sugar" means a furosyl ring modified by the bridging of two non-geminal ring atoms. A bicyclic sugar is a modified sugar.
[0037] "Bicyclic nucleic acid" or "BNA" refers to a nucleoside or nucleotide wherein the furanose portion of the nucleoside or nucleotide includes a bridge connecting two carbon atoms on the furanose ring, thereby forming a bicyclic ring system.
[0038] "Blood transfusion" refers to the process of receiving blood products into one's circulation intravenously. Transfusions are used in a variety of medical disease, disorder and/or conditions to replace lost blood components.
[0039] "Cap structure" or "terminal cap moiety" means chemical modifications, which have been incorporated at either terminus of an antisense compound.
[0040] "cEt" or "constrained ethyl" means a bicyclic sugar moiety comprising a bridge connecting the 4'-carbon and the 2'-carbon, wherein the bridge has the formula: 4'-CH(CH.sub.3)--O-2'.
[0041] "Constrained ethyl nucleoside" (also cEt nucleoside) means a nucleoside comprising a bicyclic sugar moiety comprising a 4'-CH(CH.sub.3)--O-2' bridge.
[0042] "Chemically distinct region" refers to a region of an antisense compound that is in some way chemically different than another region of the same antisense compound. For example, a region having 2'-0-methoxyethyl nucleotides is chemically distinct from a region having nucleotides without 2'-O-methoxyethyl modifications.
[0043] "Chimeric antisense compound" means an antisense compound that has at least two chemically distinct regions.
[0044] "Co-administration" means administration of two or more pharmaceutical agents to an individual. The two or more pharmaceutical agents may be in a single pharmaceutical composition, or may be in separate pharmaceutical compositions. Each of the two or more pharmaceutical agents may be administered through the same or different routes of administration. Co-administration encompasses concomitant, parallel or sequential administration.
[0045] "Complementarity" means the capacity for pairing between nucleobases of a first nucleic acid and a second nucleic acid. In certain embodiments, the first nucleic acid is an antisense compound and the second nucleic acid is a target nucleic acid.
[0046] "Contiguous nucleobases" means nucleobases immediately adjacent to each other.
[0047] "Deoxyribonucleotide" means a nucleotide having a hydrogen at the 2' position of the sugar portion of the nucleotide. Deoxyribonucleotides may be modified with any of a variety of substituents.
[0048] "Diluent" means an ingredient in a composition that lacks pharmacological activity, but is pharmaceutically necessary or desirable. For example, the diluent in an injected composition may be a liquid, e.g. phosphate buffered saline (PBS).
[0049] "Dosage unit" means a form in which a pharmaceutical agent is provided, e.g. pill, tablet, or other dosage unit known in the art. In certain embodiments, a dosage unit is a vial containing lyophilized antisense oligonucleotide. In certain embodiments, a dosage unit is a vial containing reconstituted antisense oligonucleotide.
[0050] "Dose" means a specified quantity of a pharmaceutical agent provided in a single administration, or in a specified time period. In certain embodiments, a dose may be administered in one, two, or more boluses, tablets, or injections. For example, in certain embodiments where subcutaneous administration is desired, the desired dose requires a volume not easily accommodated by a single injection, therefore, two or more injections may be used to achieve the desired dose. In certain embodiments, the pharmaceutical agent is administered by infusion over an extended period of time or continuously. Doses may be stated as the amount of pharmaceutical agent per hour, day, week, or month.
[0051] "Effective amount" or "therapeutically effective amount" means the amount of active pharmaceutical agent sufficient to effectuate a desired physiological outcome in an individual in need of the agent. The effective amount can vary among individuals depending on the health and physical condition of the individual to be treated, the taxonomic group of the individuals to be treated, the formulation of the composition, assessment of the individual's medical condition, and other relevant factors.
[0052] "Fully complementary" or "100% complementary" means that each nucleobase of a nucleobase sequence of a first nucleic acid has a complementary nucleobase in a second nucleobase sequence of a second nucleic acid. In certain embodiments, the first nucleic acid is an antisense compound and the second nucleic acid is a target nucleic acid.
[0053] "Gapmer" means a chimeric antisense compound in which an internal region having a plurality of nucleosides that support RNase H cleavage is positioned between external regions having one or more nucleosides, wherein the nucleosides comprising the internal region are chemically distinct from the nucleoside or nucleosides comprising the external regions. The internal region may be referred to as a "gap segment" and the external regions may be referred to as "wing segments."
[0054] "Gap-widened" means a chimeric antisense compound having a gap segment of 12 or more contiguous 2'-deoxynucleosides positioned between and immediately adjacent to 5' and 3' wing segments having from one to six nucleosides.
[0055] "Hemochromatosis" is a disorder of iron metabolism that results in excess iron being absorbed from the gastrointestinal tract, leading to excess iron accumulation and deposition in various tissues of the body. Primary or hereditary or classic hemochromatosis is caused by a genetic mutation, for example, in the HFE gene. Subjects with this disease have excess amounts of iron, which is absorbed in the gastrointestinal tract and builds up in the body tissues, particularly in the liver. Secondary or acquired hemochromatosis can be caused by frequent blood transfusions, high oral or parenteral intake of iron supplements, or a secondary effect of other diseases.
[0056] "Hematopoiesis" refers to the formation of cellular components of the blood, derived from hematopoietic stem cells. These stem cells reside in the medulla of the bone marrow and have the unique ability to give rise to all the different mature blood cell types.
[0057] "Hemolysis" refers to the rupturing of erythrocytes or red blood cells and the release of their contents into surrounding fluid. Hemolysis in an animal may occur due to a large number of medical conditions, including bacterial infection, parasitic infection, autoimmune disorders and genetic disorders.
[0058] "Hepcidin" refers to both an mRNA as well as a protein encoded by the mRNA that is produced by hepatocytes in response to inflammation or to rising levels of iron in the blood. The primary role of hepcidin is to regulate blood iron levels by facilitating a decrease in these blood iron levels. Hepcidin expression is increased in conditions of acute and chronic inflammation resulting in decreased iron availability for erythropoiesis. "Hepcidin" is also referred to as hepcidin antimicrobial peptide; HAMP; HAMP1; HEPC; HFE2; LEAP-1; LEAP1; and liver-expressed antimicrobial peptide.
[0059] "Hereditary anemia" refers to anemia which is caused by a hereditary condition that causes red blood cells in the body to die faster than normal, be ineffective in transporting oxygen from the lungs to the different parts of the body, or not be created at all. Examples include, but are not limited to, sickle cell anemia, thalassemia, Fanconi anemia, Diamond Blackfan anemia, Shwachman Diamond syndrome, red cell membrane disorders, glucose-6-phosphate dehydrogenase deficiency, or hereditary hemorrhagic telangiectasia.
[0060] "HFE" refers to the human hemochromatosis gene or protein.
[0061] "HFE gene mutation" refers to mutations in the HFE gene, which may result in hereditary hemochromatosis.
[0062] "Hybridization" means the annealing of complementary nucleic acid molecules. In certain embodiments, complementary nucleic acid molecules include an antisense compound and a target nucleic acid.
[0063] "Identifying an animal at risk for or having a disease, disorder and/or condition associated with excess accumulation of iron" means identifying an animal having been diagnosed with a disease, disorder and/or condition or identifying an animal predisposed to develop a disease, disorder and/or condition associated with excess accumulation of iron. For example, an animal can be predisposed to develop a disease, disorder and/or condition associated with excess accumulation of iron if the animal has a family history of hemochromatosis. Such identification may be accomplished by any method including evaluating an animal's medical history and standard clinical tests or assessments.
[0064] "Immediately adjacent" means that there are no intervening elements between the immediately adjacent elements.
[0065] "Individual" or "subject" or "animal" means a human or non-human animal selected for treatment or therapy.
[0066] "Inhibiting the expression or activity" refers to a reduction or blockade of the expression or activity of a RNA or protein and does not necessarily indicate a total elimination of expression or activity.
[0067] "Internucleoside linkage" refers to the chemical bond between nucleosides.
[0068] "Intravenous administration" means administration into a vein.
[0069] "Iron accumulation" or "iron overload" indicates accumulation and deposition of iron in the body from any cause. The most common causes are hereditary causes, transfusional iron overload, which can result from repeated blood transfusions, or excessive dietary iron intake.
[0070] "Iron supplements" refer to supplements prescribed for a medical reason to treat iron deficiency in a patient. Iron can be supplemented by the oral route or given parenterally.
[0071] "Linked nucleosides" means adjacent nucleosides which are bonded together.
[0072] "Marker" or "biomarker" is any measurable and quantifiable biological parameter that serves as an index for health- or physiology-related assessments. For example, an increase in the percentage saturation of transferrin, an increase in iron levels, or a decrease in hepcidin levels can be considered markers of an iron overload disease, disorder and/or condition.
[0073] "MCH" refers to "mean corpuscular hemoglobin" or "mean cell hemoglobin", a value to express the average mass of hemoglobin (Hb) per red blood cell in a sample of blood.
[0074] "MCV" refers to "mean corpuscular volume" or "mean cell volume", a value to express the average red blood cell size.
[0075] "Mismatch" or "non-complementary nucleobase" or "MM" refers to the case when a nucleobase of a first nucleic acid is not capable of pairing with the corresponding nucleobase of a second or target nucleic acid.
[0076] "Modified internucleoside linkage" refers to a substitution or any change from a naturally occurring internucleoside bond (i.e. a phosphodiester internucleoside bond).
[0077] "Modified nucleobase" refers to any nucleobase other than adenine, cytosine, guanine, thymidine, or uracil. For example, a modified nucleobase can be 5-methylcytosine. An "unmodified nucleobase" means the purine bases adenine (A) and guanine (G), and the pyrimidine bases thymine (T), cytosine (C), and uracil (U).
[0078] "Modified nucleoside" means a nucleoside having, independently, a modified sugar moiety and/or modified nucleobase.
[0079] "Modified nucleotide" means a nucleotide having, independently, a modified sugar moiety, modified internucleoside linkage, and/or modified nucleobase.
[0080] "Modified oligonucleotide" means an oligonucleotide comprising a modified internucleoside linkage, a modified sugar, and/or a modified nucleobase.
[0081] "Modified sugar" refers to a substitution or change from a natural sugar. For example, a modified sugar can be 2'-MOE.
[0082] "Modulating" refers to changing or adjusting a feature in a cell, tissue, organ or organism. For example, modulating TMPRSS6 level can mean to increase or decrease the level of TMPRSS6 mRNA or TMPRSS6 protein in a cell, tissue, organ or organism. A "modulator" effects the change in the cell, tissue, organ or organism. For example, a TMPRSS6 antisense oligonucleotide can be a modulator that increases or decreases the amount of TMPRSS6 mRNA or TMPRSS6 protein in a cell, tissue, organ or organism.
[0083] "Monomer" refers to a single unit of an oligomer. Monomers include, but are not limited to, nucleosides and nucleotides, whether naturally occurring or modified.
[0084] "Motif" means the pattern of chemically distinct regions in an antisense compound.
[0085] "Mutations" refer to changes in a nucleic acid sequence. Mutations can be caused in a variety of ways including, but not limited to, radiation, viruses, transposons and mutagenic chemicals, as well as errors that occur during meiosis, DNA replication, RNA transcription and post-transcriptional processing. Mutations can result in several different changes in sequence; they can have either no effect, alter the product of a gene, or prevent the gene from functioning properly or completely. For example, HFE mutation can lead to the improper functioning of the gene product, leading to excess iron absorption in the intestines.
[0086] "Myelodysplastic syndrome" refers to a diverse collection of hematological medical disease, disorder and/or conditions that involve ineffective production of the myeloid class of blood cells. The syndrome is caused by disorders of the stem cells in the bone marrow. In myelodysplastic syndrome, hematopoiesis is ineffective and the number and quality of blood cells decline irreversibly, further impairing blood production. As a result, patients with myelodysplastic syndrome develop severe anemia and require frequent blood transfusions.
[0087] "Naturally occurring internucleoside linkage" means a 3' to 5' phosphodiester linkage.
[0088] "Natural sugar moiety" means a sugar found in DNA (2'-H) or RNA (2'-OH).
[0089] "Nucleic acid" refers to molecules composed of monomeric nucleotides. A nucleic acid includes ribonucleic acids (RNA), deoxyribonucleic acids (DNA), single-stranded nucleic acids, double-stranded nucleic acids, small interfering ribonucleic acids (siRNA), and microRNAs (miRNA).
[0090] "Nucleobase" means a heterocyclic moiety capable of pairing with a base of another nucleic acid.
[0091] "Nucleobase sequence" means the order of contiguous nucleobases independent of any sugar, linkage, or nucleobase modification.
[0092] "Nucleoside" means a nucleobase linked to a sugar.
[0093] "Nucleoside mimetic" includes those structures used to replace the sugar or the sugar and the base and not necessarily the linkage at one or more positions of an oligomeric compound; such as, for example, nucleoside mimetics having morpholino, cyclohexenyl, cyclohexyl, tetrahydropyranyl, bicyclo or tricyclo sugar mimetics e.g. non furanose sugar units.
[0094] "Nucleotide" means a nucleoside having a phosphate group covalently linked to the sugar portion of the nucleoside.
[0095] "Nucleotide mimetic" includes those structures used to replace the nucleoside and the linkage at one or more positions of an oligomeric compound; such as, for example, peptide nucleic acids or morpholinos (morpholinos linked by --N(H)--C(.dbd.O)--O-- or other non-phosphodiester linkage).
[0096] "Oligomeric compound" or "oligomer" refers to a polymeric structure comprising two or more sub-structures (monomers) and capable of hybridizing to a region of a nucleic acid molecule. In certain embodiments, oligomeric compounds are oligonucleosides. In certain embodiments, oligomeric compounds are oligonucleotides. In certain embodiments, oligomeric compounds are antisense compounds. In certain embodiments, oligomeric compounds are antisense oligonucleotides. In certain embodiments, oligomeric compounds are chimeric oligonucleotides.
[0097] "Oligonucleotide" means a polymer of linked nucleosides each of which can be modified or unmodified, independent one from another.
[0098] "Parenteral administration" means administration through injection or infusion. Parenteral administration includes subcutaneous administration, intravenous administration, intramuscular administration, intra-arterial administration, intraperitoneal administration, or intracranial administration, e.g., intrathecal or intracerebroventricular administration. Administration can be continuous, or chronic, or short or intermittent.
[0099] "Peptide" refers to a molecule formed by linking at least two amino acids by amide bonds. Peptide refers to polypeptides and proteins.
[0100] "Percentage saturation of transferrin" refers to the ratio of serum iron to total iron binding capacity multiplied by 100. Of the transferrin molecules that are available to bind iron, this value tells a clinician how much serum iron are actually bound.
[0101] "Pharmaceutical composition" means a mixture of substances suitable for administering to an individual. For example, a pharmaceutical composition may comprise one or more active pharmaceutical agents and a sterile aqueous solution.
[0102] "Pharmaceutically acceptable carrier" means a medium or diluent that does not interfere with the structure of the oligonucleotide. Certain of such carriers enable pharmaceutical compositions to be formulated as, for example, tablets, pills, dragees, capsules, liquids, gels, syrups, slurries, suspension and lozenges for the oral ingestion by a subject. For example, a pharmaceutically acceptable carrier can be a sterile aqueous solution, such as PBS.
[0103] "Pharmaceutically acceptable derivative" encompasses pharmaceutically acceptable salts, conjugates, prodrugs or isomers of the compounds described herein.
[0104] "Pharmaceutically acceptable salts" means physiologically and pharmaceutically acceptable salts of antisense compounds, i.e., salts that retain the desired biological activity of the parent oligonucleotide and do not impart undesired toxicological effects thereto.
[0105] "Phosphorothioate linkage" means a linkage between nucleosides where the phosphodiester bond is modified by replacing one of the non-bridging oxygen atoms with a sulfur atom. A phosphorothioate linkage is a modified internucleoside linkage.
[0106] "Polycythemia" refers to a condition of increased red blood cells (RBCs) in a specified volume due to either an increase in red blood cell numbers (absolute polycythemia) or a decrease in plasma volume (relative polycythemia). Blood volume to red blood cell proportions can be measured as Hematocrit (Hct) levels. The increased proportion of RBCs can make the blood viscous which can lead to slower blood flow through the circulatory system and potential formation of blood clots. Slower blood flow can decrease oxygen transport to cells, tissue and/or organs leading to diseases, disorders or conditions such as angina or heart failure. Formation of blood clots in the circulatory system can lead to cell, tissue and/or organ damage leading to diseases, disorders or conditions such as myocardial infarction or stroke. Treatment for polycythemia includes phlebotomy or drugs to decrease RBC production (e.g., INF-.alpha., hydroxyurea, anagrelide). Examples of polycythemia include, but is not limited to, polycythemia vera (PCV), polycythemia rubra vera (PRV) and erythremia. In certain instances, polycythemia can progress into erythroid leukemia in a subject.
[0107] "Portion" means a defined number of contiguous (i.e. linked) nucleobases of a nucleic acid. In certain embodiments, a portion is a defined number of contiguous nucleobases of a target nucleic acid. In certain embodiments, a portion is a defined number of contiguous nucleobases of an antisense compound.
[0108] "Prevent" refers to delaying or forestalling the onset, development, or progression of a disease, disorder, or condition for a period of time from minutes to indefinitely. Prevent also means reducing risk of developing a disease, disorder, or condition.
[0109] "Prodrug" means a therapeutic agent that is prepared in an inactive form that is converted to an active form within the body or cells thereof by the action of endogenous enzymes or other chemicals or conditions.
[0110] "Side effects" means physiological responses attributable to a treatment other than the desired effects. In certain embodiments, side effects include injection site reactions, liver function test abnormalities, renal function abnormalities, liver toxicity, renal toxicity, central nervous system abnormalities, myopathies, and malaise. For example, increased aminotransferase levels in serum may indicate liver toxicity or liver function abnormality.
[0111] "Single-stranded oligonucleotide" means an oligonucleotide which is not hybridized to a complementary strand.
[0112] "Specifically hybridizable" refers to an antisense compound having a sufficient degree of complementarity with a target nucleic acid to induce a desired effect, while exhibiting minimal or no effects on non-target nucleic acids under conditions in which specific binding is desired, i.e. under physiological conditions in the case of in vivo assays and therapeutic treatments.
[0113] "Subcutaneous administration" means administration just below the skin.
[0114] "Targeting" or "targeted" means the process of design and selection of an antisense compound that will specifically hybridize to a target nucleic acid and induce a desired effect.
[0115] "Target nucleic acid," "target RNA," and "target RNA transcript" all refer to a nucleic acid capable of being targeted by antisense compounds.
[0116] "Target segment" means the sequence of nucleotides of a target nucleic acid to which an antisense compound is targeted. "5' target site" refers to the 5'-most nucleotide of a target segment. "3' target site" refers to the 3'-most nucleotide of a target segment.
[0117] "Thalassemia" refers to a subgroup of anemias (e.g., .alpha.-thalassemia, .beta.-thalassemia, .delta.-thalassemia, non-transfusion dependent thalassemia (NTDT)) caused by the formation of abnormal hemoglobin molecules leading to the destruction or degradation of red blood cells. Complications of thalassemia include excess iron (i.e. iron overload in the blood either from the thalassemia itself or from frequent transfusions to treat the thalassemia), increased risk of infection, bone deformities, enlarged spleens (i.e. splenomegaly), slowed growth rates and heart problems (e.g., congestive heart failure and arrhythmias).
[0118] "Therapeutically effective amount" means an amount of a pharmaceutical agent that provides a therapeutic benefit to an animal.
[0119] "TMPRSS6" (also known as "matriptase-2") refers to any nucleic acid or protein of TMPRSS6.
[0120] "TMPRSS6 nucleic acid" means any nucleic acid encoding TMPRSS6. For example, in certain embodiments, a TMPRSS6 nucleic acid includes a DNA sequence encoding TMPRSS6, a RNA sequence transcribed from DNA encoding TMPRSS6 (including genomic DNA comprising introns and exons), and a mRNA sequence encoding TMPRSS6. "TMPRSS6 mRNA" means a mRNA encoding a TMPRSS6 protein.
[0121] "TMPRSS6 specific inhibitor" refers to any agent capable of specifically inhibiting the expression of TMPRSS6 gene, TMPRSS6 RNA and/or TMPRSS6 protein at the molecular level. For example, TMPRSS6 specific inhibitors include nucleic acids (including antisense compounds), peptides, antibodies, small molecules, and other agents capable of inhibiting the level of TMPRSS6. In certain embodiments, by specifically modulating TMPRSS6, TMPRSS6 specific inhibitors may affect components of the iron accumulation pathway.
[0122] "Treat" refers to administering a pharmaceutical composition to an animal in order to effect an alteration or improvement of a disease, disorder, or condition in the animal. In certain embodiments, one or more pharmaceutical compositions can be administered to the animal.
[0123] "Unmodified nucleotide" means a nucleotide composed of naturally occurring nucleobases, sugar moieties, and internucleoside linkages. In certain embodiments, an unmodified nucleotide is an RNA nucleotide (i.e. .beta.-D-ribonucleotide) or a DNA nucleotide (i.e. .beta.-D-deoxyribonucleotide).
CERTAIN EMBODIMENTS
[0124] In certain embodiments disclosed herein, TMPRSS6 has the sequence as set forth in: GenBank Accession No. NM_153609.2 (incorporated herein as SEQ ID NO: 1); the complement of GENBANK Accession NT_011520.12 truncated from 16850000 to U.S. Pat. No. 16,897,000 (incorporated herein as SEQ ID NO: 2); GENBANK Accession CR456446.1 (incorporated herein as SEQ ID NO: 3); GENBANK Accession No. BC039082.1 (incorporated herein as SEQ ID NO: 4); GENBANK Accession No. AY358398.1 (incorporated herein as SEQ ID NO: 5); and GENBANK Accession No. DB081153.1 (incorporated herein as SEQ ID NO: 6).
[0125] Certain embodiments disclosed herein provide a compound comprising a modified oligonucleotide targeting a nucleic acid sequence encoding TMPRSS6. In certain embodiments, the compound targets a TMPRSS6 sequence as shown in the nucleobase sequences of any of SEQ ID NOs: 1-6.
[0126] Certain embodiments disclosed herein provide a compound comprising a modified oligonucleotide consisting of 12 to 30 linked nucleosides having a nucleobase sequence comprising at least 8, least 9, least 10, least 11, at least 12, least 13, at least 14, at least 15, at least 16, least 17, least 18, least 19, or 20 contiguous nucleobases complementary to an equal length portion of SEQ ID NOs: 1-6.
[0127] Certain embodiments disclosed herein provide a compound comprising a modified oligonucleotide consisting of 12 to 30 linked nucleosides having a nucleobase sequence comprising a portion of at least 8 contiguous nucleobases complementary to an equal length portion of nucleobases 3162 to 3184 of SEQ ID NO: 1, wherein the nucleobase sequence of the modified oligonucleotide is at least 80% complementary to SEQ ID NO: 1.
[0128] Certain embodiments disclosed herein provide a compound comprising a modified oligonucleotide consisting of 12 to 30 linked nucleosides having a nucleobase sequence comprising a portion of at least 8 contiguous nucleobases complementary to an equal length portion of nucleobases 1286 to 1305 of SEQ ID NO: 1, wherein the nucleobase sequence of the modified oligonucleotide is at least 80% complementary to SEQ ID NO: 1.
[0129] Certain embodiments disclosed herein provide a compound comprising a modified oligonucleotide consisting of 12 to 30 linked nucleosides having a nucleobase sequence comprising a portion of at least 8, at least 9, at least 10, at least 11, at least 12, at least 13, at least 14, at least 15, at least 16, at least 17, at least 18, at least 19, or at least 20 contiguous nucleobases complementary to an equal length portion of nucleobases 3162 to 3184 of SEQ ID NO: 1, wherein the nucleobase sequence of the modified oligonucleotide is at least 80% complementary to SEQ ID NO: 1.
[0130] Certain embodiments disclosed herein provide a compound comprising a modified oligonucleotide consisting of 12 to 30 linked nucleosides having a nucleobase sequence comprising a portion of at least 8, at least 9, at least 10, at least 11, at least 12, at least 13, at least 14, at least 15, at least 16, at least 17, at least 18, at least 19, or at least 20 contiguous nucleobases complementary to an equal length portion of nucleobases 1286 to 1305 of SEQ ID NO: 1, wherein the nucleobase sequence of the modified oligonucleotide is at least 80% complementary to SEQ ID NO: 1.
[0131] Certain embodiments disclosed herein provide a compound comprising a modified oligonucleotide consisting of 12 to 30 linked nucleosides having a nucleobase sequence comprising at least 8, at least 9, at least 10, at least 11, at least 12, at least 13, at least 14, at least 15, at least 16, at least 17, at least 18, at least 19, or 20 contiguous nucleobases of any of the nucleobase sequences of SEQ ID NOs: 7-85.
[0132] Certain embodiments disclosed herein provide a compound comprising a modified oligonucleotide consisting of 12 to 30 linked nucleosides having a nucleobase sequence comprising at least 8, at least 9, at least 10, at least 11, at least 12, at least 13, at least 14, at least 15, at least 16, at least 17, at least 18, at least 19, or 20 contiguous nucleobases of any of the nucleobase sequences of SEQ ID NOs: 23, 36, 37, 63, 77.
[0133] Certain embodiments disclosed herein provide a compound comprising a modified oligonucleotide consisting of 12 to 30 linked nucleosides having a nucleobase sequence comprising at least 8, at least 9, at least 10, at least 11, at least 12, at least 13, at least 14, at least 15, at least 16, at least 17, at least 18, at least 19, or 20 contiguous nucleobases of SEQ ID NO: 36.
[0134] Certain embodiments disclosed herein provide a compound comprising a modified oligonucleotide consisting of 12 to 30 linked nucleosides having a nucleobase sequence comprising at least 8, at least 9, at least 10, at least 11, at least 12, at least 13, at least 14, at least 15, at least 16, at least 17, at least 18, at least 19, or 20 contiguous nucleobases of SEQ ID NO: 77.
[0135] In certain embodiments, the nucleobase sequence of the modified oligonucleotide is at least 70%, at least 75%, at least 80%, at least 85%, at least 90%, at least 95%, at least 96%, at least 97%, at least 98%, or at least 99% complementary to an equal length portion of any of SEQ ID NOs: 1-6. In certain embodiments, the modified oligonucleotide comprises a nucleobase sequence 100% complementary to an equal length portion of any of SEQ ID NOs: 1-6.
[0136] In certain embodiments, the compound comprises a modified oligonucleotide consisting of 8 to 80, 20 to 80, 10 to 50, 20 to 35, 10 to 30, 12 to 30, 15 to 30, 16 to 30, 20 to 30, 20 to 29, 20 to 28, 20 to 27, 20 to 26, 20 to 25, 20 to 24, 20 to 23, 20 to 22, 20 to 21, 15 to 25, 16 to 25, 15 to 24, 16 to 24, 17 to 24, 18 to 24, 19 to 24, 19 to 22, 16 to 21, 18 to 21 or 16 to 20 linked nucleobases. In certain embodiments, the compound comprises a modified oligonucleotide consisting of 16 linked nucleosides. In certain embodiments, the compound comprises a modified oligonucleotide consisting of 20 linked nucleosides.
[0137] In certain embodiments, the compound comprises a modified oligonucleotide consisting of 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, or 80 linked nucleobases in length, or a range defined by any two of the above values.
[0138] In certain embodiments, the modified oligonucleotide is single-stranded.
[0139] In certain embodiments, the modified oligonucleotide comprises at least one modified internucleoside linkage. In certain embodiments, the modified internucleoside linkage is a phosphorothioate internucleoside linkage. In certain embodiments, at least one modified internucleoside linkage is a phosphorothioate internucleoside linkage. In certain embodiments, each modified internucleoside linkage is a phosphorothioate internucleoside linkage.
[0140] In certain embodiments, the modified oligonucleotide comprises at least one nucleoside comprising a modified sugar. In certain embodiments, at least one modified sugar comprises a bicyclic sugar. In certain embodiments, at least one modified sugar comprises a 2'-O-methoxyethyl, a constrained ethyl, a 3'-fluoro-HNA or a 4'-(CH.sub.2).sub.n--O-2' bridge, wherein n is 1 or 2.
[0141] In certain embodiments, the modified oligonucleotide comprises at least one nucleoside comprising a modified nucleobase. In certain embodiments, the modified nucleobase is a 5-methylcytosine.
[0142] In certain embodiments, the modified oligonucleotide comprises a conjugate group. In certain embodiments, the conjugate is a carbohydrate moiety. In certain embodiments, the conjugate is a GalNAc moiety. In certain embodiments, the GalNAc is 5'-Trishexylamino-(THA)-C6 GalNAc.sub.3. In certain embodiments, the conjugate has the formula
##STR00005##
[0143] In certain embodiments, the compound comprises a modified oligonucleotide consisting of 12 to 30 linked nucleosides and targeted to or complementary to an equal length portion of region 3162 to 3184 of SEQ ID NO: 1, wherein the modified oligonucleotide comprises: (a) a gap segment consisting of linked deoxynucleosides; (b) a 5' wing segment consisting of linked nucleosides; and (c) a 3' wing segment consisting of linked nucleosides; wherein the gap segment is positioned immediately adjacent to and between the 5' wing segment and the 3' wing segment and wherein each nucleoside of each wing segment comprises a modified sugar. In certain embodiments, the modified oligonucleotide further comprises at least one phosphorothioate internucleoside linkage. In certain embodiments, the modified oligonucleotide further comprises a GalNAc conjugate. In certain embodiments, the conjugate is a 5'-Trishexylamino-(THA)-C6 GalNAc.sub.3 conjugate.
[0144] In certain embodiments, the compound comprises a modified oligonucleotide consisting of 12 to 30 linked nucleosides and targeted to or complementary to an equal length portion of region 1286 to 1305 of SEQ ID NO: 1, wherein the modified oligonucleotide comprises: (a) a gap segment consisting of linked deoxynucleosides; (b) a 5' wing segment consisting of linked nucleosides; and (c) a 3' wing segment consisting of linked nucleosides; wherein the gap segment is positioned immediately adjacent to and between the 5' wing segment and the 3' wing segment and wherein each nucleoside of each wing segment comprises a modified sugar. In certain embodiments, the modified oligonucleotide further comprises at least one phosphorothioate internucleoside linkage. In certain embodiments, the modified oligonucleotide further comprises a GalNAc conjugate. In certain embodiments, the conjugate is a 5'-Trishexylamino-(THA)-C6 GalNAc.sub.3 conjugate.
[0145] In certain embodiments, the compound comprises a modified oligonucleotide consisting of 20 linked nucleosides and targeted to or complementary to an equal length portion of region 3162 to 3181 of SEQ ID NO: 1, wherein the modified oligonucleotide comprises: (a) a gap segment consisting of ten linked deoxynucleosides; (b) a 5' wing segment consisting of five linked nucleosides; and (c) a 3' wing segment consisting of five linked nucleosides; wherein the gap segment is positioned immediately adjacent to and between the 5' wing segment and the 3' wing segment, wherein each nucleoside of each wing segment comprises a 2'-O-methoxyethyl sugar, wherein at least one internucleoside linkage is a phosphorothioate linkage and wherein each cytosine residue is a 5-methylcytosine. In certain embodiments, the modified oligonucleotide further comprises a GalNAc conjugate. In certain embodiments, the conjugate is a 5'-Trishexylamino-(THA)-C6 GalNAc.sub.3 conjugate.
[0146] In certain embodiments, the compound comprises a modified oligonucleotide consisting of 16 linked nucleosides and targeted to or complementary to an equal length portion of region 3169 to 3184 of SEQ ID NO: 1, wherein the modified oligonucleotide comprises: (a) a gap segment consisting of nine linked deoxynucleosides; (b) a 5' wing segment consisting of three linked nucleosides; and (c) a 3' wing segment consisting of four linked nucleosides; wherein the gap segment is positioned immediately adjacent to and between the 5' wing segment and the 3' wing segment, wherein each nucleoside of each wing segment comprises a modified sugar, wherein each internucleoside linkage is a phosphorothioate linkage and wherein each cytosine residue is a 5-methylcytosine. In certain embodiments, the modified oligonucleotide further comprises a GalNAc conjugate. In certain embodiments, the conjugate is a 5'-Trishexylamino-(THA)-C6 GalNAc.sub.3 conjugate.
[0147] In certain embodiments, the compound comprising a modified oligonucleotide consisting of 20 linked nucleosides and having a nucleobase sequence comprising at least 8 contiguous nucleobases of SEQ ID NO: 36, wherein the modified oligonucleotide comprises: (a) a gap segment consisting of ten linked deoxynucleosides; (b) a 5' wing segment consisting of five linked nucleosides; and (c) a 3' wing segment consisting of five linked nucleosides; wherein the gap segment is positioned immediately adjacent to and between the 5' wing segment and the 3' wing segment, wherein each nucleoside of each wing segment comprises a 2'-O-methoxyethyl sugar, wherein at least one internucleoside linkage is a phosphorothioate linkage and wherein each cytosine residue is a 5-methylcytosine. In certain embodiments, the modified oligonucleotide further comprises a GalNAc conjugate. In certain embodiments, the conjugate is a 5'-Trishexylamino-(THA)-C6 GalNAc.sub.3 conjugate.
[0148] In certain embodiments, the compound comprising a modified oligonucleotide consisting of 16 linked nucleosides and having a nucleobase sequence comprising at least 8 contiguous nucleobases of SEQ ID NO: 77, wherein the modified oligonucleotide comprises: (a) a gap segment consisting of nine linked deoxynucleosides; (b) a 5' wing segment consisting of three linked nucleosides; and (c) a 3' wing segment consisting of four linked nucleosides; wherein the gap segment is positioned immediately adjacent to and between the 5' wing segment and the 3' wing segment, wherein each nucleoside of each wing segment comprises a modified sugar, wherein each internucleoside linkage is a phosphorothioate linkage and wherein each cytosine residue is a 5-methylcytosine. In certain embodiments, the modified oligonucleotide further comprises a GalNAc conjugate. In certain embodiments, the conjugate is a 5'-Trishexylamino-(THA)-C6 GalNAc.sub.3 conjugate.
[0149] Certain embodiments disclosed herein provide a compound comprising a modified oligonucleotide according to the following formula: mCes Teo Teo Teo Aeo Tds Tds mCds mCds Ads Ads Ads Gds Gds Gds mCeo Aeo Ges mCes Te (SEQ ID NO: 36); wherein, A is an adenine, mC is a 5-methylcytosine, G is a guanine, T is a thymine, e is a 2'-O-methoxyethyl modified nucleoside, d is a 2'-deoxynucleoside, and s is a phosphorothioate internucleoside linkage. In certain embodiments, the modified oligonucleotide further comprises a GalNAc conjugate. In certain embodiments, the conjugate is a 5'-Trishexylamino-(THA)-C6 GalNAc.sub.3 conjugate.
[0150] Certain embodiments disclosed herein provide a compound comprising a modified oligonucleotide with the following formula:
##STR00006## ##STR00007##
[0151] Certain embodiments disclosed herein provide a compound comprising a modified oligonucleotide according to the following formula: mCks Aes Gks mCds Tds Tds Tds Ads Tds Tds mCds mCds Aes Aes Aks Gk (SEQ ID NO: 77); wherein, A is an adenine, mC is a 5-methylcytosine, G is a guanine, T is a thymine, e is a 2'-O-methoxyethyl modified nucleoside, d is a 2'-deoxynucleoside, s is a phosphorothioate internucleoside linkage, and k is a cEt. In certain embodiments, the modified oligonucleotide further comprises a GalNAc conjugate. In certain embodiments, the conjugate is a 5'-Trishexylamino-(THA)-C6 GalNAc.sub.3 conjugate.
[0152] Certain embodiments disclosed herein provide a compound comprising a modified oligonucleotide with the following formula:
##STR00008## ##STR00009##
[0153] In certain embodiments, the compounds or compositions disclosed herein comprise a salt of the modified oligonucleotide.
[0154] In certain embodiments, the compounds or compositions disclosed herein further comprise a pharmaceutically acceptable carrier or diluent.
[0155] In certain embodiments, the animal is a human.
[0156] Certain embodiments provide a composition or compound comprising a modified oligonucleotide as described herein, wherein the viscosity level is less than 40 cP. In certain embodiments, the composition has a viscosity level less than 15 cP. In certain embodiments, the composition has a viscosity level less than 12 cP. In certain embodiments, the composition has a viscosity level less than 10 cP.
[0157] Certain embodiments disclosed herein provide compounds and compositions comprising a modified oligonucleotide targeting TMPRSS6 for use in reducing TMPRSS6 in a cell, tissue, organ or animal.
[0158] Certain embodiments disclosed herein provide compounds and compositions comprising a modified oligonucleotide targeting TMPRSS6 for use in reducing iron levels in a cell, tissue, organ or animal. In certain embodiments, the compounds and compositions reduce serum iron levels. In certain embodiments, the compounds and compositions reduce liver iron levels. In certain embodiments, the compounds and compositions reduce iron absorption. In certain embodiments, the compounds and compositions reduce iron overload or accumulation. In certain embodiments, reducing iron overload/accumulation ameliorates, treats, prevents or delays a disease, disorder or condition related to iron overload.
[0159] Certain embodiments disclosed herein provide compounds and compositions comprising a modified oligonucleotide targeting TMPRSS6 for use in increasing hepcidin levels, such as mRNA or protein expression levels, in an animal.
[0160] Certain embodiments disclosed herein provide compounds and compositions comprising a modified oligonucleotide targeting TMPRSS6 for use in decreasing the percentage saturation of transferrin in an animal. In certain embodiments, decreasing transferrin saturation leads to a decrease in iron supply for erythropoiesis. In certain embodiments, the decrease in erythropoiesis treats, prevents, delays the onset of, ameliorates, and/or reduces polycythemia, or symptom thereof, in the animal. In certain embodiments, the polycythemia is polycythemia vera. In certain embodiments, treatment with the modified oligonucleotide targeting TMPRSS6 prevents or delays the polycythemia from progressing into erythroid leukemia.
[0161] Certain embodiments disclosed herein provide compounds and compositions comprising a modified oligonucleotide targeting TMPRSS6 for reducing iron accumulation in an animal. In certain embodiments, compounds and compositions comprising a modified oligonucleotide targeting TMPRSS6 are used for treating, preventing, slowing the progression, delaying the onset of, ameliorating and/or reducing a disease, disorder and/or condition, or symptom thereof, associated with the excess accumulation of iron in an animal.
[0162] In certain embodiments, the iron accumulation is the result of, or cause of, a disease, disorder or condition in the animal. In certain embodiments, the disease, disorder or condition is ineffective erythropoiesis, polycythemia, hemochromatosis or anemia. In certain embodiments, the hemochromatosis is hereditary hemochromatosis. In certain embodiments, the anemia is hereditary anemia, myelodysplastic syndrome or severe chronic hemolysis. In certain embodiments, the hereditary anemia is sickle cell anemia, thalassemia, Fanconi anemia, Diamond Blackfan anemia, Shwachman Diamond syndrome, red cell membrane disorders, glucose-6-phosphate dehydrogenase deficiency, or hereditary hemorrhagic telangiectasia. In certain embodiments, the thalassemia is .beta.-thalassemia. In certain embodiments, the .beta.-thalassemia is .beta.-thalassemia major, .beta.-thalassemia intermedia or .beta.-thalassemia minor. In certain embodiments, the disease, disorder or condition is associated with mutations in the HFE gene. In other embodiments, the disease is associated with mutations in the hemojuvelin gene. In other embodiments, the disease is associated with mutations in the hepcidin gene.
[0163] In certain embodiments, the iron accumulation is the result of a therapy to treat a disease, disorder or condition in the animal. In certain embodiments, the therapy is phlebotomy or transfusion therapy. In certain embodiments, the disease, disorder and/or condition may be due to multiple blood transfusions. In certain embodiments, multiple transfusions may lead to polycythemia. In certain embodiments, multiple blood transfusions are associated with the animal having anemia. Examples of anemia requiring multiple blood transfusions are hereditary anemia, myelodysplastic syndrome and severe chronic hemolysis.
[0164] In certain embodiments, the disease, disorder and/or condition is associated with excess parenteral iron supplement intake or excess dietary iron intake.
[0165] In certain embodiments, provided are compounds and compositions comprising a modified oligonucleotide targeting TMPRSS6 for use in therapy. In certain embodiments, the compounds and compositions comprising a modified oligonucleotide targeting TMPRSS6 are administered to an animal in a therapeutically effective amount.
[0166] In certain embodiments, provided are compounds and compositions comprising a modified oligonucleotide targeting TMPRSS6 for use in the preparation of a medicament. In certain embodiments, the medicament is used for treating, preventing, slowing the progression, delaying the onset of, and/or reducing a disease, disorder and/or condition, or symptom thereof, associated with excess accumulation of iron in an animal.
[0167] In certain embodiments, the composition or compound comprising a modified oligonucleotide targeting TMPRSS6 is co-administered with one or more second agent(s). In certain embodiments the second agent is an iron chelator or a hepcidin agonist. In further embodiments, the iron chelator includes FBS0701 (FerroKin), Exjade, Desferal or Deferiprone (DFP). In certain embodiments, the second agent is a second antisense compound. In further embodiments, the second antisense compound targets TMPRSS6. In other embodiments, the second antisense compound targets a non-TMPRSS6 compound. In other embodiments, the composition or compound comprising a modified oligonucleotide targeting TMPRSS6 is administered before, during or after phlebotomy or transfusion therapy.
Antisense Compounds
[0168] Oligomeric compounds include, but are not limited to, oligonucleotides, oligonucleosides, oligonucleotide analogs, oligonucleotide mimetics, antisense compounds, antisense oligonucleotides, and siRNAs. An oligomeric compound can be "antisense" to a target nucleic acid, meaning that it is capable of undergoing hybridization to a target nucleic acid through hydrogen bonding.
[0169] In certain embodiments, an antisense compound has a nucleobase sequence that, when written in the 5' to 3' direction, comprises the reverse complement of the target segment of a target nucleic acid to which it is targeted. In certain such embodiments, an antisense oligonucleotide has a nucleobase sequence that, when written in the 5' to 3' direction, comprises the reverse complement of the target segment of a target nucleic acid to which it is targeted.
[0170] In certain embodiments, an antisense compound targeted to TMPRSS6 nucleic acid is 10 to 30 nucleotides in length. In other words, antisense compounds are from 10 to 30 linked nucleobases. In other embodiments, the antisense compound comprises a modified oligonucleotide consisting of 8 to 80, 10 to 80, 12 to 50, 15 to 30, 18 to 24, 19 to 22, or 20 linked nucleobases. In certain such embodiments, the antisense compound comprises a modified oligonucleotide consisting of 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, or 80 linked nucleobases in length, or a range defined by any two of the above values. In some embodiments, the antisense compound is an antisense oligonucleotide.
[0171] In certain embodiments, the antisense compound comprises a shortened or truncated modified oligonucleotide. The shortened or truncated modified oligonucleotide can have a single nucleoside deleted from the 5' end (5' truncation), the central portion or alternatively from the 3' end (3' truncation). A shortened or truncated oligonucleotide can have two or more nucleosides deleted from the 5' end, two or more nucleosides deleted from the central portion or alternatively can have two or more nucleosides deleted from the 3' end. Alternatively, the deleted nucleosides can be dispersed throughout the modified oligonucleotide, for example, in an antisense compound having one or more nucleoside deleted from the 5' end, one or more nucleoside deleted from the central portion and/or one or more nucleoside deleted from the 3' end.
[0172] When a single additional nucleoside is present in a lengthened oligonucleotide, the additional nucleoside can be located at the 5' end, 3' end or central portion of the oligonucleotide. When two or more additional nucleosides are present, the added nucleosides can be adjacent to each other, for example, in an oligonucleotide having two nucleosides added to the 5' end (5' addition), to the 3' end (3' addition) or the central portion, of the oligonucleotide. Alternatively, the added nucleoside can be dispersed throughout the antisense compound, for example, in an oligonucleotide having one or more nucleoside added to the 5' end, one or more nucleoside added to the 3' end, and/or one or more nucleoside added to the central portion.
[0173] It is possible to increase or decrease the length of an antisense compound, such as an antisense oligonucleotide, and/or introduce mismatch bases without eliminating activity. For example, in Woolf et al. (Proc. Natl. Acad. Sci. USA 89:7305-7309, 1992), a series of antisense oligonucleotides 13-25 nucleobases in length were tested for their ability to induce cleavage of a target RNA in an oocyte injection model. Antisense oligonucleotides 25 nucleobases in length with 8 or 11 mismatch bases near the ends of the antisense oligonucleotides were able to direct specific cleavage of the target mRNA, albeit to a lesser extent than the antisense oligonucleotides that contained no mismatches. Similarly, target specific cleavage was achieved using 13 nucleobase antisense oligonucleotides, including those with 1 or 3 mismatches.
[0174] Gautschi et al (J. Natl. Cancer Inst. 93:463-471, March 2001) demonstrated the ability of an oligonucleotide having 100% complementarity to the bcl-2 mRNA and having 3 mismatches to the bcl-xL mRNA to reduce the expression of both bcl-2 and bcl-xL in vitro and in vivo. Furthermore, this oligonucleotide demonstrated potent anti-tumor activity in vivo.
[0175] Maher and Dolnick (Nuc. Acid. Res. 16:3341-3358, 1988) tested a series of tandem 14 nucleobase antisense oligonucleotides, and a 28 and 42 nucleobase antisense oligonucleotides comprised of the sequence of two or three of the tandem antisense oligonucleotides, respectively, for their ability to arrest translation of human DHFR in a rabbit reticulocyte assay. Each of the three 14 nucleobase antisense oligonucleotides alone was able to inhibit translation, albeit at a more modest level than the 28 or 42 nucleobase antisense oligonucleotides.
Certain Antisense Compound Motifs and Mechanisms
[0176] In certain embodiments, antisense compounds have chemically modified subunits arranged in patterns, or motifs, to confer to the antisense compounds properties such as enhanced inhibitory activity, increased binding affinity for a target nucleic acid, or resistance to degradation by in vivo nucleases.
Chimeric antisense compounds typically contain at least one region modified so as to confer increased resistance to nuclease degradation, increased cellular uptake, increased binding affinity for the target nucleic acid, and/or increased inhibitory activity. A second region of a chimeric antisense compound may confer another desired property e.g., serve as a substrate for the cellular endonuclease RNase H, which cleaves the RNA strand of an RNA:DNA duplex.
[0177] Antisense activity may result from any mechanism involving the hybridization of the antisense compound (e.g., oligonucleotide) with a target nucleic acid, wherein the hybridization ultimately results in a biological effect. In certain embodiments, the amount and/or activity of the target nucleic acid is modulated. In certain embodiments, the amount and/or activity of the target nucleic acid is reduced. In certain embodiments, hybridization of the antisense compound to the target nucleic acid ultimately results in target nucleic acid degradation. In certain embodiments, hybridization of the antisense compound to the target nucleic acid does not result in target nucleic acid degradation. In certain such embodiments, the presence of the antisense compound hybridized with the target nucleic acid (occupancy) results in a modulation of antisense activity. In certain embodiments, antisense compounds having a particular chemical motif or pattern of chemical modifications are particularly suited to exploit one or more mechanisms. In certain embodiments, antisense compounds function through more than one mechanism and/or through mechanisms that have not been elucidated. Accordingly, the antisense compounds described herein are not limited by particular mechanism.
[0178] Antisense mechanisms include, without limitation, RNase H mediated antisense; RNAi mechanisms, which utilize the RISC pathway and include, without limitation, siRNA, ssRNA and microRNA mechanisms; and occupancy based mechanisms. Certain antisense compounds may act through more than one such mechanism and/or through additional mechanisms.
[0179] RNase H-Mediated Antisense
[0180] In certain embodiments, antisense activity results at least in part from degradation of target RNA by RNase H. RNase H is a cellular endonuclease that cleaves the RNA strand of an RNA:DNA duplex. It is known in the art that single-stranded antisense compounds which are "DNA-like" elicit RNase H activity in mammalian cells. Accordingly, antisense compounds comprising at least a portion of DNA or DNA-like nucleosides may activate RNase H, resulting in cleavage of the target nucleic acid. In certain embodiments, antisense compounds that utilize RNase H comprise one or more modified nucleosides. In certain embodiments, such antisense compounds comprise at least one block of 1-8 modified nucleosides. In certain such embodiments, the modified nucleosides do not support RNase H activity. In certain embodiments, such antisense compounds are gapmers, as described herein. In certain such embodiments, the gap of the gapmer comprises DNA nucleosides. In certain such embodiments, the gap of the gapmer comprises DNA-like nucleosides. In certain such embodiments, the gap of the gapmer comprises DNA nucleosides and DNA-like nucleosides.
[0181] Certain antisense compounds having a gapmer motif are considered chimeric antisense compounds. In a gapmer an internal region having a plurality of nucleotides that supports RNaseH cleavage is positioned between external regions having a plurality of nucleotides that are chemically distinct from the nucleosides of the internal region. In the case of an antisense oligonucleotide having a gapmer motif, the gap segment generally serves as the substrate for endonuclease cleavage, while the wing segments comprise modified nucleosides. In certain embodiments, the regions of a gapmer are differentiated by the types of sugar moieties comprising each distinct region. The types of sugar moieties that are used to differentiate the regions of a gapmer may in some embodiments include .beta.-D-ribonucleosides, .beta.-D-deoxyribonucleosides, 2'-modified nucleosides (such 2'-modified nucleosides may include 2'-MOE and 2'-O--CH.sub.3, among others), and bicyclic sugar modified nucleosides (such bicyclic sugar modified nucleosides may include those having a constrained ethyl). In certain embodiments, nucleosides in the wings may include several modified sugar moieties, including, for example 2'-MOE and bicyclic sugar moieties such as constrained ethyl (cEt) or LNA. In certain embodiments, wings may include several modified and unmodified sugar moieties. In certain embodiments, wings may include various combinations of 2'-MOE nucleosides, bicyclic sugar moieties such as constrained ethyl nucleosides or LNA nucleosides, and 2'-deoxynucleosides.
[0182] Each distinct region may comprise uniform sugar moieties, variant, or alternating sugar moieties. The wing-gap-wing motif is frequently described as "X-Y-Z", where "X" represents the length of the 5'-wing, "Y" represents the length of the gap, and "Z" represents the length of the 3'-wing. "X" and "Z" may comprise uniform, variant, or alternating sugar moieties. In certain embodiments, "X" and "Y" may include one or more 2'-deoxynucleosides. "Y" may comprise 2'-deoxynucleosides. As used herein, a gapmer described as "X-Y-Z" has a configuration such that the gap is positioned immediately adjacent to each of the 5'-wing and the 3' wing. Thus, no intervening nucleotides exist between the 5'-wing and gap, or the gap and the 3'-wing. Any of the antisense compounds described herein can have a gapmer motif. In certain embodiments, "X" and "Z" are the same; in other embodiments they are different. In certain embodiments, "Y" is between 8 and 15 nucleosides. X, Y, or Z can be any of 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 25, 30 or more nucleosides.
[0183] In certain embodiments, the antisense compound targeted to a TMPRSS6 nucleic acid has a gapmer motif in which the gap consists of 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, or 16 linked nucleosides.
[0184] In certain embodiments, the antisense oligonucleotide has a sugar motif described by Formula A as follows: (J).sub.m-(B).sub.n-(J).sub.p-(B).sub.r-(A).sub.t-(D).sub.g-(A).sub.v-(B)- .sub.w-(J).sub.x-(B).sub.y-(J).sub.z
[0185] wherein:
[0186] each A is independently a 2'-substituted nucleoside;
[0187] each B is independently a bicyclic nucleoside;
[0188] each J is independently either a 2'-substituted nucleoside or a 2'-deoxynucleoside;
[0189] each D is a 2'-deoxynucleoside;
[0190] m is 0-4; n is 0-2; p is 0-2; r is 0-2; t is 0-2; v is 0-2; w is 0-4; x is 0-2; y is 0-2; z is 0-4; g is 6-14; provided that:
[0191] at least one of m, n, and r is other than 0;
[0192] at least one of w and y is other than 0;
[0193] the sum of m, n, p, r, and t is from 2 to 5; and
[0194] the sum of v, w, x, y, and z is from 2 to 5.
[0195] RNAi Compounds
[0196] In certain embodiments, antisense compounds are interfering RNA compounds (RNAi), which include double-stranded RNA compounds (also referred to as short-interfering RNA or siRNA) and single-stranded RNAi compounds (or ssRNA). Such compounds work at least in part through the RISC pathway to degrade and/or sequester a target nucleic acid (thus, include microRNA/microRNA-mimic compounds). In certain embodiments, antisense compounds comprise modifications that make them particularly suited for such mechanisms.
[0197] i. ssRNA compounds
[0198] In certain embodiments, antisense compounds including those particularly suited for use as single-stranded RNAi compounds (ssRNA) comprise a modified 5'-terminal end. In certain such embodiments, the 5'-terminal end comprises a modified phosphate moiety. In certain embodiments, such modified phosphate is stabilized (e.g., resistant to degradation/cleavage compared to unmodified 5'-phosphate). In certain embodiments, such 5'-terminal nucleosides stabilize the 5'-phosphorous moiety. Certain modified 5'-terminal nucleosides may be found in the art, for example in WO 2011/139702.
[0199] In certain embodiments, the 5'-nucleoside of an ssRNA compound has Formula IIc:
##STR00010##
wherein:
[0200] T.sub.1 is an optionally protected phosphorus moiety;
[0201] T.sub.2 is an internucleoside linking group linking the compound of Formula IIc to the oligomeric compound;
[0202] A has one of the formulas:
##STR00011##
[0203] Q.sub.1 and Q.sub.2 are each, independently, H, halogen, C.sub.1-C.sub.6 alkyl, substituted C.sub.1-C.sub.6 alkyl, C.sub.1-C.sub.6alkoxy, substituted C.sub.1-C.sub.6 alkoxy, C.sub.2-C.sub.6 alkenyl, substituted C.sub.2-C.sub.6 alkenyl, C.sub.2-C.sub.6 alkynyl, substituted C.sub.2-C.sub.6 alkynyl or N(R.sub.3)(R.sub.4);
[0204] Q.sub.3 is O, S, N(R.sub.5) or C(R.sub.6)(R.sub.7);
[0205] each R.sub.3, R.sub.4 R.sub.5, R.sub.6 and R.sub.7 is, independently, H, C.sub.1-C.sub.6 alkyl, substituted C.sub.1-C.sub.6 alkyl or C.sub.1-C.sub.6 alkoxy;
[0206] M.sub.3 is O, S, NR.sub.14, C(R.sub.15)(R.sub.16), C(R.sub.15)(R.sub.16)C(R.sub.17)(R.sub.18), C(R.sub.15).dbd.C(R.sub.17), OC(R.sub.15)(R.sub.16) or OC(R.sub.15)(Bx.sub.2);
[0207] R.sub.14 is H, C.sub.1-C.sub.6 alkyl, substituted C.sub.1-C.sub.6 alkyl, C.sub.1-C.sub.6 alkoxy, substituted C.sub.1-C.sub.6 alkoxy, C.sub.2-C.sub.6 alkenyl, substituted C.sub.2-C.sub.6 alkenyl, C.sub.2-C.sub.6 alkynyl or substituted C.sub.2-C.sub.6 alkynyl; R.sub.15, R.sub.16, R.sub.17 and R.sub.18 are each, independently, H, halogen, C.sub.1-C.sub.6 alkyl, substituted C.sub.1-C.sub.6 alkyl, C.sub.1-C.sub.6 alkoxy, substituted C.sub.1-C.sub.6 alkoxy, C.sub.2-C.sub.6 alkenyl, substituted C.sub.2-C.sub.6 alkenyl, C.sub.2-C.sub.6 alkynyl or substituted C.sub.2-C.sub.6 alkynyl;
[0208] Bx.sub.1 is a heterocyclic base moiety;
[0209] or if Bx.sub.2 is present then Bx.sub.2 is a heterocyclic base moiety and Bx.sub.1 is H, halogen, C.sub.1-C.sub.6 alkyl, substituted C.sub.1-C.sub.6 alkyl, C.sub.1-C.sub.6 alkoxy, substituted C.sub.1-C.sub.6 alkoxy, C.sub.2-C.sub.6 alkenyl, substituted C.sub.2-C.sub.6 alkenyl, C.sub.2-C.sub.6 alkynyl or substituted C.sub.2-C.sub.6 alkynyl;
[0210] J.sub.4, J.sub.5, J.sub.6 and J.sub.7 are each, independently, H, halogen, C.sub.1-C.sub.6 alkyl, substituted C.sub.1-C.sub.6 alkyl, C.sub.1-C.sub.6 alkoxy, substituted C.sub.1-C.sub.6 alkoxy, C.sub.2-C.sub.6 alkenyl, substituted C.sub.2-C.sub.6 alkenyl, C.sub.2-C.sub.6 alkynyl or substituted C.sub.2-C.sub.6 alkynyl;
[0211] or J.sub.4 forms a bridge with one of J.sub.5 or J.sub.7 wherein said bridge comprises from 1 to 3 linked biradical groups selected from O, S, NR.sub.19, C(R.sub.20)(R.sub.21), C(R.sub.20).dbd.C(R.sub.21), C[.dbd.C(R.sub.20)(R.sub.21)] and C(.dbd.O) and the other two of J.sub.5, J.sub.6 and J.sub.7 are each, independently, H, halogen, C.sub.1-C.sub.6 alkyl, substituted C.sub.1-C.sub.6 alkyl, C.sub.1-C.sub.6 alkoxy, substituted C.sub.1-C.sub.6 alkoxy, C.sub.2-C.sub.6 alkenyl, substituted C.sub.2-C.sub.6 alkenyl, C.sub.2-C.sub.6 alkynyl or substituted C.sub.2-C.sub.6 alkynyl;
[0212] each R.sub.19, R.sub.20 and R.sub.21 is, independently, H, C.sub.1-C.sub.6 alkyl, substituted C.sub.1-C.sub.6 alkyl, C.sub.1-C.sub.6 alkoxy, substituted C.sub.1-C.sub.6 alkoxy, C.sub.2-C.sub.6 alkenyl, substituted C.sub.2-C.sub.6 alkenyl, C.sub.2-C.sub.6 alkynyl or substituted C.sub.2-C.sub.6 alkynyl;
[0213] G is H, OH, halogen or O--[C(R.sub.8)(R.sub.9)].sub.n--[(C.dbd.O).sub.m--X.sub.1].sub.j--Z;
[0214] each R.sub.8 and R.sub.9 is, independently, H, halogen, C.sub.1-C.sub.6 alkyl or substituted C.sub.1-C.sub.6 alkyl;
[0215] X.sub.1 is O, S or N(E.sub.1);
[0216] Z is H, halogen, C.sub.1-C.sub.6 alkyl, substituted C.sub.1-C.sub.6 alkyl, C.sub.2-C.sub.6 alkenyl, substituted C.sub.2-C.sub.6 alkenyl, C.sub.2-C.sub.6 alkynyl, substituted C.sub.2-C.sub.6 alkynyl or N(E2)(E3);
[0217] E.sub.1, E.sub.2 and E.sub.3 are each, independently, H, C.sub.1-C.sub.6 alkyl or substituted C.sub.1-C.sub.6 alkyl;
[0218] n is from 1 to about 6;
[0219] m is 0 or 1;
[0220] j is 0 or 1;
[0221] each substituted group comprises one or more optionally protected substituent groups independently selected from halogen, OJ.sub.1, N(J.sub.1)(J.sub.2), =NJ.sub.1, SJ.sub.1, N.sub.3, CN, OC(.dbd.X.sub.2)J.sub.1, OC(.dbd.X.sub.2)N(J.sub.1)(J.sub.2) and C(.dbd.X.sub.2)N(J.sub.1)(J.sub.2);
[0222] X.sub.2 is O, S or NJ.sub.3;
[0223] each J.sub.1, J.sub.2 and J.sub.3 is, independently, H or C.sub.1-C.sub.6 alkyl;
[0224] when j is 1 then Z is other than halogen or N(E.sub.2)(E.sub.3); and
[0225] wherein said oligomeric compound comprises from 8 to 40 monomeric subunits and is hybridizable to at least a portion of a target nucleic acid.
[0226] In certain embodiments, M.sub.3 is O, CH.dbd.CH, OCH.sub.2 or OC(H)(Bx.sub.2). In certain embodiments, M.sub.3 is O.
[0227] In certain embodiments, J.sub.4, J.sub.5, J.sub.6 and J.sub.7 are each H. In certain embodiments, J.sub.4 forms a bridge with one of J.sub.5 or J.sub.7.
[0228] In certain embodiments, A has one of the formulas:
##STR00012##
wherein:
[0229] Q.sub.1 and Q.sub.2 are each, independently, H, halogen, C.sub.1-C.sub.6 alkyl, substituted C.sub.1-C.sub.6 alkyl, C.sub.1-C.sub.6 alkoxy or substituted C.sub.1-C.sub.6 alkoxy. In certain embodiments, Q.sub.1 and Q.sub.2 are each H. In certain embodiments, Q.sub.1 and Q.sub.2 are each, independently, H or halogen. In certain embodiments, Q.sub.1 and Q.sub.2 is H and the other of Q.sub.1 and Q.sub.2 is F, CH.sub.3 or OCH.sub.3.
[0230] In certain embodiments, T, has the formula:
##STR00013##
wherein:
[0231] R.sub.a and R.sub.c are each, independently, protected hydroxyl, protected thiol, C.sub.1-C.sub.6 alkyl, substituted C.sub.1-C.sub.6 alkyl, C.sub.1-C.sub.6 alkoxy, substituted C.sub.1-C.sub.6 alkoxy, protected amino or substituted amino; and
[0232] R.sub.b is O or S. In certain embodiments, R.sub.b is O and R.sub.a and R.sub.c are each, independently, OCH.sub.3, OCH.sub.2CH.sub.3 or CH(CH.sub.3).sub.2.
[0233] In certain embodiments, G is halogen, OCH.sub.3, OCH.sub.2F, OCHF.sub.2, OCF.sub.3, OCH.sub.2CH.sub.3, O(CH.sub.2).sub.2F, OCH.sub.2CHF.sub.2, OCH.sub.2CF.sub.3, OCH.sub.2--CH.dbd.CH.sub.2, O(CH.sub.2).sub.2--OCH.sub.3, O(CH.sub.2).sub.2--SCH.sub.3, O(CH.sub.2).sub.2--OCF.sub.3, O(CH.sub.2).sub.3--N(R.sub.10)(R.sub.11), O(CH.sub.2).sub.2--ON(R.sub.10)(R.sub.11), O(CH.sub.2).sub.2--O(CH.sub.2).sub.2--N(R.sub.10)(R.sub.11), OCH.sub.2C(.dbd.O)--N(R.sub.10)(R.sub.11), OCH.sub.2C(.dbd.O)--N(R.sub.12)--(CH.sub.2).sub.2--N(R.sub.10)(R.sub.11) or O(CH.sub.2).sub.2--N(R.sub.12)--C(.dbd.NR.sub.13)[N(R.sub.10)(R.sub.11- )] wherein R.sub.10, R.sub.11, R.sub.12 and R.sub.13 are each, independently, H or C.sub.1-C.sub.6 alkyl. In certain embodiments, G is halogen, OCH.sub.3, OCF.sub.3, OCH.sub.2CH.sub.3, OCH.sub.2CF.sub.3, OCH.sub.2--CH.dbd.CH.sub.2, O(CH.sub.2).sub.2--OCH.sub.3, O(CH.sub.2).sub.2--O(CH.sub.2).sub.2--N(CH.sub.3).sub.2, OCH.sub.2C(.dbd.O)--N(H)CH.sub.3, OCH.sub.2C(.dbd.O)--N(H)--(CH.sub.2).sub.2--N(CH.sub.3).sub.2 or OCH.sub.2--N(H)--C(.dbd.NH)NH.sub.2. In certain embodiments, G is F, OCH.sub.3 or O(CH.sub.2).sub.2--OCH.sub.3. In certain embodiments, G is O(CH.sub.2).sub.2--OCH.sub.3.
[0234] In certain embodiments, the 5'-terminal nucleoside has Formula IIe:
##STR00014##
[0235] In certain embodiments, antisense compounds, including those particularly suitable for ssRNA comprise one or more type of modified sugar moieties and/or naturally occurring sugar moieties arranged along an oligonucleotide or region thereof in a defined pattern or sugar modification motif. Such motifs may include any of the sugar modifications discussed herein and/or other known sugar modifications.
[0236] In certain embodiments, the oligonucleotides comprise or consist of a region having uniform sugar modifications. In certain such embodiments, each nucleoside of the region comprises the same RNA-like sugar modification. In certain embodiments, each nucleoside of the region is a 2'-F nucleoside. In certain embodiments, each nucleoside of the region is a 2'-OMe nucleoside. In certain embodiments, each nucleoside of the region is a 2'-MOE nucleoside. In certain embodiments, each nucleoside of the region is a cEt nucleoside. In certain embodiments, each nucleoside of the region is an LNA nucleoside. In certain embodiments, the uniform region constitutes all or essentially all of the oligonucleotide. In certain embodiments, the region constitutes the entire oligonucleotide except for 1-4 terminal nucleosides.
[0237] In certain embodiments, oligonucleotides comprise one or more regions of alternating sugar modifications, wherein the nucleosides alternate between nucleotides having a sugar modification of a first type and nucleotides having a sugar modification of a second type. In certain embodiments, nucleosides of both types are RNA-like nucleosides. In certain embodiments the alternating nucleosides are selected from: 2'-OMe, 2'-F, 2'-MOE, LNA, and cEt. In certain embodiments, the alternating modifications are 2'-F and 2'-OMe. Such regions may be contiguous or may be interrupted by differently modified nucleosides or conjugated nucleosides.
[0238] In certain embodiments, the alternating region of alternating modifications each consist of a single nucleoside (i.e., the pattern is (AB).sub.xA.sub.y wherein A is a nucleoside having a sugar modification of a first type and B is a nucleoside having a sugar modification of a second type; x is 1-20 and y is 0 or 1). In certain embodiments, one or more alternating regions in an alternating motif includes more than a single nucleoside of a type. For example, oligonucleotides may include one or more regions of any of the following nucleoside motifs:
AABBAA;
ABBABB;
AABAAB;
ABBABAABB;
ABABAA;
AABABAB;
ABABAA;
ABBAABBABABAA;
BABBAABBABABAA; or
ABABBAABBABABAA;
[0239] wherein A is a nucleoside of a first type and B is a nucleoside of a second type. In certain embodiments, A and B are each selected from 2'-F, 2'-OMe, BNA, and MOE.
[0240] In certain embodiments, oligonucleotides having such an alternating motif also comprise a modified 5' terminal nucleoside, such as those of formula IIc or IIe.
[0241] In certain embodiments, oligonucleotides comprise a region having a 2-2-3 motif. Such regions comprises the following motif:
-(A).sub.2-(B).sub.x-(A).sub.2-(C).sub.y-(A).sub.3-
[0242] wherein: A is a first type of modified nucleoside;
[0243] B and C, are nucleosides that are differently modified than A, however, B and C may have the same or different modifications as one another;
[0244] x and y are from 1 to 15.
[0245] In certain embodiments, A is a 2'-OMe modified nucleoside. In certain embodiments, B and C are both 2'-F modified nucleosides. In certain embodiments, A is a 2'-OMe modified nucleoside and B and C are both 2'-F modified nucleosides.
[0246] In certain embodiments, oligonucleosides have the following sugar motif:
5'-(Q)-(AB).sub.xA.sub.y-(D).sub.z
wherein:
[0247] Q is a nucleoside comprising a stabilized phosphate moiety. In certain embodiments, Q is a nucleoside having Formula IIc or IIe;
[0248] A is a first type of modified nucleoside;
[0249] B is a second type of modified nucleoside;
[0250] D is a modified nucleoside comprising a modification different from the nucleoside adjacent to it. Thus, if y is 0, then D must be differently modified than B and if y is 1, then D must be differently modified than A. In certain embodiments, D differs from both A and B.
[0251] X is 5-15;
[0252] Y is 0 or 1;
[0253] Z is 0-4.
[0254] In certain embodiments, oligonucleosides have the following sugar motif:
5'-(Q)-(A).sub.x-(D).sub.z
wherein:
[0255] Q is a nucleoside comprising a stabilized phosphate moiety. In certain embodiments, Q is a nucleoside having Formula IIc or IIe;
[0256] A is a first type of modified nucleoside;
[0257] D is a modified nucleoside comprising a modification different from A.
[0258] X is 11-30;
[0259] Z is 0-4.
[0260] In certain embodiments A, B, C, and D in the above motifs are selected from: 2'-OMe, 2'-F, 2'-MOE, LNA, and cEt. In certain embodiments, D represents terminal nucleosides. In certain embodiments, such terminal nucleosides are not designed to hybridize to the target nucleic acid (though one or more might hybridize by chance). In certain embodiments, the nucleobase of each D nucleoside is adenine, regardless of the identity of the nucleobase at the corresponding position of the target nucleic acid. In certain embodiments the nucleobase of each D nucleoside is thymine.
[0261] In certain embodiments, antisense compounds, including those particularly suited for use as ssRNA comprise modified internucleoside linkages arranged along the oligonucleotide or region thereof in a defined pattern or modified internucleoside linkage motif. In certain embodiments, oligonucleotides comprise a region having an alternating internucleoside linkage motif. In certain embodiments, oligonucleotides comprise a region of uniformly modified internucleoside linkages. In certain such embodiments, the oligonucleotide comprises a region that is uniformly linked by phosphorothioate internucleoside linkages. In certain embodiments, the oligonucleotide is uniformly linked by phosphorothioate internucleoside linkages. In certain embodiments, each internucleoside linkage of the oligonucleotide is selected from phosphodiester and phosphorothioate. In certain embodiments, each internucleoside linkage of the oligonucleotide is selected from phosphodiester and phosphorothioate and at least one internucleoside linkage is phosphorothioate.
[0262] In certain embodiments, the oligonucleotide comprises at least 6 phosphorothioate internucleoside linkages. In certain embodiments, the oligonucleotide comprises at least 8 phosphorothioate internucleoside linkages. In certain embodiments, the oligonucleotide comprises at least 10 phosphorothioate internucleoside linkages. In certain embodiments, the oligonucleotide comprises at least one block of at least 6 consecutive phosphorothioate internucleoside linkages. In certain embodiments, the oligonucleotide comprises at least one block of at least 8 consecutive phosphorothioate internucleoside linkages. In certain embodiments, the oligonucleotide comprises at least one block of at least 10 consecutive phosphorothioate internucleoside linkages. In certain embodiments, the oligonucleotide comprises at least one block of at least one 12 consecutive phosphorothioate internucleoside linkages. In certain such embodiments, at least one such block is located at the 3' end of the oligonucleotide. In certain such embodiments, at least one such block is located within 3 nucleosides of the 3' end of the oligonucleotide.
[0263] Oligonucleotides having any of the various sugar motifs described herein, may have any linkage motif. For example, the oligonucleotides, including but not limited to those described above, may have a linkage motif selected from non-limiting the table below:
TABLE-US-00001 5' most linkage Central region 3'-region PS Alternating PO/PS 6 PS PS Alternating PO/PS 7 PS PS Alternating PO/PS 8 PS
[0264] ii. siRNA Compounds
[0265] In certain embodiments, antisense compounds are double-stranded RNAi compounds (siRNA). In such embodiments, one or both strands may comprise any modification motif described above for ssRNA. In certain embodiments, ssRNA compounds may be unmodified RNA. In certain embodiments, siRNA compounds may comprise unmodified RNA nucleosides, but modified internucleoside linkages.
[0266] Several embodiments relate to double-stranded compositions wherein each strand comprises a motif defined by the location of one or more modified or unmodified nucleosides. In certain embodiments, compositions are provided comprising a first and a second oligomeric compound that are fully or at least partially hybridized to form a duplex region and further comprising a region that is complementary to and hybridizes to a nucleic acid target. It is suitable that such a composition comprise a first oligomeric compound that is an antisense strand having full or partial complementarity to a nucleic acid target and a second oligomeric compound that is a sense strand having one or more regions of complementarity to and forming at least one duplex region with the first oligomeric compound.
[0267] The compositions of several embodiments modulate gene expression by hybridizing to a nucleic acid target resulting in loss of its normal function. In some embodiments, the target nucleic acid is TMPRSS6. In certain embodiment, the degradation of the targeted TMPRSS6 is facilitated by an activated RISC complex that is formed with compositions of the invention.
[0268] Several embodiments are directed to double-stranded compositions wherein one of the strands is useful in, for example, influencing the preferential loading of the opposite strand into the RISC (or cleavage) complex. The compositions are useful for targeting selected nucleic acid molecules and modulating the expression of one or more genes. In some embodiments, the compositions of the present invention hybridize to a portion of a target RNA resulting in loss of normal function of the target RNA.
[0269] Certain embodiments are drawn to double-stranded compositions wherein both the strands comprises a hemimer motif, a fully modified motif, a positionally modified motif or an alternating motif. Each strand of the compositions of the present invention can be modified to fulfil a particular role in for example the siRNA pathway. Using a different motif in each strand or the same motif with different chemical modifications in each strand permits targeting the antisense strand for the RISC complex while inhibiting the incorporation of the sense strand. Within this model, each strand can be independently modified such that it is enhanced for its particular role. The antisense strand can be modified at the 5'-end to enhance its role in one region of the RISC while the 3'-end can be modified differentially to enhance its role in a different region of the RISC.
[0270] The double-stranded oligonucleotide molecules can be a double-stranded polynucleotide molecule comprising self-complementary sense and antisense regions, wherein the antisense region comprises nucleotide sequence that is complementary to nucleotide sequence in a target nucleic acid molecule or a portion thereof and the sense region having nucleotide sequence corresponding to the target nucleic acid sequence or a portion thereof. The double-stranded oligonucleotide molecules can be assembled from two separate oligonucleotides, where one strand is the sense strand and the other is the antisense strand, wherein the antisense and sense strands are self-complementary (i.e. each strand comprises nucleotide sequence that is complementary to nucleotide sequence in the other strand; such as where the antisense strand and sense strand form a duplex or double-stranded structure, for example wherein the double-stranded region is about 15 to about 30, e.g., about 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29 or 30 base pairs; the antisense strand comprises nucleotide sequence that is complementary to nucleotide sequence in a target nucleic acid molecule or a portion thereof and the sense strand comprises nucleotide sequence corresponding to the target nucleic acid sequence or a portion thereof (e.g., about 15 to about 25 or more nucleotides of the double-stranded oligonucleotide molecule are complementary to the target nucleic acid or a portion thereof). Alternatively, the double-stranded oligonucleotide is assembled from a single oligonucleotide, where the self-complementary sense and antisense regions of the siRNA are linked by means of a nucleic acid based or non-nucleic acid-based linker(s).
[0271] The double-stranded oligonucleotide can be a polynucleotide with a duplex, asymmetric duplex, hairpin or asymmetric hairpin secondary structure, having self-complementary sense and antisense regions, wherein the antisense region comprises nucleotide sequence that is complementary to nucleotide sequence in a separate target nucleic acid molecule or a portion thereof and the sense region having nucleotide sequence corresponding to the target nucleic acid sequence or a portion thereof. The double-stranded oligonucleotide can be a circular single-stranded polynucleotide having two or more loop structures and a stem comprising self-complementary sense and antisense regions, wherein the antisense region comprises nucleotide sequence that is complementary to nucleotide sequence in a target nucleic acid molecule or a portion thereof and the sense region having nucleotide sequence corresponding to the target nucleic acid sequence or a portion thereof, and wherein the circular polynucleotide can be processed either in vivo or in vitro to generate an active siRNA molecule capable of mediating RNAi.
[0272] In certain embodiments, the double-stranded oligonucleotide comprises separate sense and antisense sequences or regions, wherein the sense and antisense regions are covalently linked by nucleotide or non-nucleotide linkers molecules as is known in the art, or are alternately non-covalently linked by ionic interactions, hydrogen bonding, van der waals interactions, hydrophobic interactions, and/or stacking interactions. In certain embodiments, the double-stranded oligonucleotide comprises nucleotide sequence that is complementary to nucleotide sequence of a target gene. In another embodiment, the double-stranded oligonucleotide interacts with nucleotide sequence of a target gene in a manner that causes inhibition of expression of the target gene.
[0273] As used herein, double-stranded oligonucleotides need not be limited to those molecules containing only RNA, but further encompasses chemically modified nucleotides and non-nucleotides. In certain embodiments, the short interfering nucleic acid molecules lack 2'-hydroxy (2'-OH) containing nucleotides. In certain embodiments short interfering nucleic acids optionally do not include any ribonucleotides (e.g., nucleotides having a 2'-OH group). Such double-stranded oligonucleotides that do not require the presence of ribonucleotides within the molecule to support RNAi can however have an attached linker or linkers or other attached or associated groups, moieties, or chains containing one or more nucleotides with 2'-OH groups. Optionally, double-stranded oligonucleotides can comprise ribonucleotides at about 5, 10, 20, 30, 40, or 50% of the nucleotide positions. As used herein, the term siRNA is meant to be equivalent to other terms used to describe nucleic acid molecules that are capable of mediating sequence specific RNAi, for example short interfering RNA (siRNA), double-stranded RNA (dsRNA), micro-RNA (miRNA), short hairpin RNA (shRNA), short interfering oligonucleotide, short interfering nucleic acid, short interfering modified oligonucleotide, chemically modified siRNA, post-transcriptional gene silencing RNA (ptgsRNA), and others. In addition, as used herein, the term RNAi is meant to be equivalent to other terms used to describe sequence specific RNA interference, such as post transcriptional gene silencing, translational inhibition, or epigenetics. For example, double-stranded oligonucleotides can be used to epigenetically silence genes at both the post-transcriptional level and the pre-transcriptional level. In a non-limiting example, epigenetic regulation of gene expression by siRNA molecules of the invention can result from siRNA mediated modification of chromatin structure or methylation pattern to alter gene expression (see, for example, Verdel et al., 2004, Science, 303, 672-676; Pal-Bhadra et al., 2004, Science, 303, 669-672; Allshire, 2002, Science, 297, 1818-1819; Volpe et al., 2002, Science, 297, 1833-1837; Jenuwein, 2002, Science, 297, 2215-2218; and Hall et al., 2002, Science, 297, 2232-2237).
[0274] It is contemplated that compounds and compositions of several embodiments provided herein can target TMPRSS6 by a dsRNA-mediated gene silencing or RNAi mechanism, including, e.g., "hairpin" or stem-loop double-stranded RNA effector molecules in which a single RNA strand with self-complementary sequences is capable of assuming a double-stranded conformation, or duplex dsRNA effector molecules comprising two separate strands of RNA. In various embodiments, the dsRNA consists entirely of ribonucleotides or consists of a mixture of ribonucleotides and deoxynucleotides, such as the RNA/DNA hybrids disclosed, for example, by WO 00/63364, filed Apr. 19, 2000, or U.S. Ser. No. 60/130,377, filed Apr. 21, 1999. The dsRNA or dsRNA effector molecule may be a single molecule with a region of self-complementarity such that nucleotides in one segment of the molecule base pair with nucleotides in another segment of the molecule. In various embodiments, a dsRNA that consists of a single molecule consists entirely of ribonucleotides or includes a region of ribonucleotides that is complementary to a region of deoxyribonucleotides. Alternatively, the dsRNA may include two different strands that have a region of complementarity to each other.
[0275] In various embodiments, both strands consist entirely of ribonucleotides, one strand consists entirely of ribonucleotides and one strand consists entirely of deoxyribonucleotides, or one or both strands contain a mixture of ribonucleotides and deoxyribonucleotides. In certain embodiments, the regions of complementarity are at least 70, 80, 90, 95, 98, or 100% complementary to each other and to a target nucleic acid sequence. In certain embodiments, the region of the dsRNA that is present in a double-stranded conformation includes at least 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 50, 75, 100, 200, 500, 1000, 2000 or 5000 nucleotides or includes all of the nucleotides in a cDNA or other target nucleic acid sequence being represented in the dsRNA.
[0276] In some embodiments, the dsRNA does not contain any single stranded regions, such as single stranded ends, or the dsRNA is a hairpin. In other embodiments, the dsRNA has one or more single stranded regions or overhangs. In certain embodiments, RNA/DNA hybrids include a DNA strand or region that is an antisense strand or region (e.g, has at least 70, 80, 90, 95, 98, or 100% complementarity to a target nucleic acid) and an RNA strand or region that is a sense strand or region (e.g, has at least 70, 80, 90, 95, 98, or 100% identity to a target nucleic acid), and vice versa.
[0277] In various embodiments, the RNA/DNA hybrid is made in vitro using enzymatic or chemical synthetic methods such as those described herein or those described in WO 00/63364, filed Apr. 19, 2000, or U.S. Ser. No. 60/130,377, filed Apr. 21, 1999. In other embodiments, a DNA strand synthesized in vitro is complexed with an RNA strand made in vivo or in vitro before, after, or concurrent with the transformation of the DNA strand into the cell. In yet other embodiments, the dsRNA is a single circular nucleic acid containing a sense and an antisense region, or the dsRNA includes a circular nucleic acid and either a second circular nucleic acid or a linear nucleic acid (see, for example, WO 00/63364, filed Apr. 19, 2000, or U.S. Ser. No. 60/130,377, filed Apr. 21, 1999.) Exemplary circular nucleic acids include lariat structures in which the free 5' phosphoryl group of a nucleotide becomes linked to the 2' hydroxyl group of another nucleotide in a loop back fashion.
[0278] In other embodiments, the dsRNA includes one or more modified nucleotides in which the 2' position in the sugar contains a halogen (such as fluorine group) or contains an alkoxy group (such as a methoxy group) which increases the half-life of the dsRNA in vitro or in vivo compared to the corresponding dsRNA in which the corresponding 2' position contains a hydrogen or an hydroxyl group. In yet other embodiments, the dsRNA includes one or more linkages between adjacent nucleotides other than a naturally-occurring phosphodiester linkage. Examples of such linkages include phosphoramide, phosphorothioate, and phosphorodithioate linkages. The dsRNAs may also be chemically modified nucleic acid molecules as taught in U.S. Pat. No. 6,673,661. In other embodiments, the dsRNA contains one or two capped strands, as disclosed, for example, by WO 00/63364, filed Apr. 19, 2000, or U.S. Ser. No. 60/130,377, filed Apr. 21, 1999.
[0279] In other embodiments, the dsRNA can be any of the at least partially dsRNA molecules disclosed in WO 00/63364, as well as any of the dsRNA molecules described in U.S. Provisional Application 60/399,998; and U.S. Provisional Application 60/419,532, and PCT/US2003/033466, the teaching of which is hereby incorporated by reference. Any of the dsRNAs may be expressed in vitro or in vivo using the methods described herein or standard methods, such as those described in WO 00/63364.
[0280] Occupancy
[0281] In certain embodiments, antisense compounds are not expected to result in cleavage or the target nucleic acid via RNase H or to result in cleavage or sequestration through the RISC pathway. In certain such embodiments, antisense activity may result from occupancy, wherein the presence of the hybridized antisense compound disrupts the activity of the target nucleic acid. In certain such embodiments, the antisense compound may be uniformly modified or may comprise a mix of modifications and/or modified and unmodified nucleosides.
Target Nucleic Acids, Target Regions and Nucleotide Sequences
[0282] Nucleotide sequences that encode TMPRSS6 include, without limitation, the following: GENBANK Accession NM_153609.2 (incorporated herein as SEQ ID NO: 1), the complement of GENBANK Accession NT_011520.12 truncated from 16850000 to U.S. Pat. No. 16,897,000 (incorporated herein as SEQ ID NO: 2), GENBANK Accession CR456446.1 (incorporated herein as SEQ ID NO: 3), GENBANK Accession No. BC039082.1 (incorporated herein as SEQ ID NO: 4), GENBANK Accession No. AY358398.1 (incorporated herein as SEQ ID NO: 5), or GENBANK Accession No. DB081153.1 (incorporated herein as SEQ ID NO: 6). In certain embodiments, an antisense compound described herein targets a nucleic acid sequence encoding TMPRSS6. In certain embodiments, an antisense compound described herein targets the sequence of any of SEQ ID NOs: 1-6.
[0283] It is understood that the sequence set forth in each SEQ ID NO in the examples contained herein is independent of any modification to a sugar moiety, an internucleoside linkage, or a nucleobase. As such, antisense compounds defined by a SEQ ID NO may comprise, independently, one or more modifications to a sugar moiety, an internucleoside linkage, or a nucleobase. Antisense compounds described by Isis Number (Isis No) indicate a combination of nucleobase sequence and motif.
[0284] In certain embodiments, a target region is a structurally defined region of the target nucleic acid. For example, a target region may encompass a 3' UTR, a 5' UTR, an exon, an intron, an exon/intron junction, a coding region, a translation initiation region, translation termination region, or other defined nucleic acid region. The structurally defined regions for TMPRSS6 can be obtained by accession number from sequence databases such as NCBI and such information is incorporated herein by reference. In certain embodiments, a target region may encompass the sequence from a 5' target site of one target segment within the target region to a 3' target site of another target segment within the target region.
[0285] In certain embodiments, a "target segment" is a smaller, sub-portion of a target region within a nucleic acid. For example, a target segment can be the sequence of nucleotides of a target nucleic acid to which one or more antisense compound is targeted. "5' target site" refers to the 5'-most nucleotide of a target segment. "3' target site" refers to the 3'-most nucleotide of a target segment.
[0286] Targeting includes determination of at least one target segment to which an antisense compound hybridizes, such that a desired effect occurs. In certain embodiments, the desired effect is a reduction in mRNA target nucleic acid levels. In certain embodiments, the desired effect is reduction of levels of protein encoded by the target nucleic acid or a phenotypic change associated with the target nucleic acid.
[0287] A target region may contain one or more target segments. Multiple target segments within a target region may be overlapping. Alternatively, they may be non-overlapping. In certain embodiments, target segments within a target region are separated by no more than about 300 nucleotides. In certain embodiments, target segments within a target region are separated by a number of nucleotides that is, is about, is no more than, is no more than about, 250, 200, 150, 100, 90, 80, 70, 60, 50, 40, 30, 20, or 10 nucleotides on the target nucleic acid, or is a range defined by any two of the preceeding values. In certain embodiments, target segments within a target region are separated by no more than, or no more than about, 5 nucleotides on the target nucleic acid. In certain embodiments, target segments are contiguous. Contemplated are target regions defined by a range having a starting nucleic acid that is any of the 5' target sites or 3' target sites listed herein.
[0288] Suitable target segments may be found within a 5' UTR, a coding region, a 3' UTR, an intron, an exon, or an exon/intron junction. Target segments containing a start codon or a stop codon are also suitable target segments. A suitable target segment may specifically exclude a certain structurally defined region such as the start codon or stop codon.
[0289] The determination of suitable target segments may include a comparison of the sequence of a target nucleic acid to other sequences throughout the genome. For example, the BLAST algorithm may be used to identify regions of similarity amongst different nucleic acids. This comparison can prevent the selection of antisense compound sequences that may hybridize in a non-specific manner to sequences other than a selected target nucleic acid (i.e., non-target or off-target sequences).
[0290] There may be variation in activity (e.g., as defined by percent reduction of target nucleic acid levels) of the antisense compounds within an active target region. In certain embodiments, reductions in TMPRSS6 mRNA levels are indicative of inhibition of TMPRSS6 expression. Reductions in levels of a TMPRSS6 protein are also indicative of inhibition of TMPRSS6 expression. Further, phenotypic changes are indicative of inhibition of TMPRSS6 expression. For example, an increase in hepcidin expression levels can be indicative of inhibition of TMPRSS6 expression. In another example, a decrease in iron accumulation in tissues can be indicative of inhibition of TMPRSS6 expression. In another example, an increase in the percentage of saturation of transferrin can be indicative of inhibition of TMPRSS6 expression.
Hybridization
[0291] In some embodiments, hybridization occurs between an antisense compound disclosed herein and a TMPRSS6 nucleic acid. The most common mechanism of hybridization involves hydrogen bonding (e.g., Watson-Crick, Hoogsteen or reversed Hoogsteen hydrogen bonding) between complementary nucleobases of the nucleic acid molecules.
[0292] Hybridization can occur under varying conditions. Stringent conditions are sequence-dependent and are determined by the nature and composition of the nucleic acid molecules to be hybridized.
[0293] Methods of determining whether a sequence is specifically hybridizable to a target nucleic acid are well known in the art (Sambrook and Russell, Molecular Cloning: A Laboratory Manual, 3.sup.rd Ed., 2001). In certain embodiments, the antisense compounds provided herein are specifically hybridizable with a TMPRSS6 nucleic acid.
Complementarity
[0294] An antisense compound and a target nucleic acid are complementary to each other when a sufficient number of nucleobases of the antisense compound can hydrogen bond with the corresponding nucleobases of the target nucleic acid, such that a desired effect will occur (e.g., antisense inhibition of a target nucleic acid, such as a TMPRSS6 nucleic acid).
[0295] Non-complementary nucleobases between an antisense compound and a TMPRSS6 nucleic acid may be tolerated provided that the antisense compound remains able to specifically hybridize to the TMPRSS6 nucleic acid. Moreover, an antisense compound may hybridize over one or more segments of a TMPRSS6 nucleic acid such that intervening or adjacent segments are not involved in the hybridization event (e.g., a loop structure, mismatch or hairpin structure).
[0296] In certain embodiments, the antisense compounds provided herein, or a specified portion thereof, are, or are at least 70%, at least 80%, at least 85%, at least 86%, at least 87%, at least 88%, at least 89%, at least 90%, at least 91%, at least 92%, at least 93%, at least 94%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99%, or 100% complementary to a TMPRSS6 nucleic acid, a target region, target segment, or specified portion thereof. Percent complementarity of an antisense compound with a target nucleic acid can be determined using routine methods. For example, an antisense compound in which 18 of 20 nucleobases of the antisense compound are complementary to a target region, and would therefore specifically hybridize, would represent 90 percent complementarity. In this example, the remaining noncomplementary nucleobases may be clustered or interspersed with complementary nucleobases and need not be contiguous to each other or to complementary nucleobases. As such, an antisense compound which is 18 nucleobases in length having 4 (four) noncomplementary nucleobases which are flanked by two regions of complete complementarity with the target nucleic acid would have 77.8% overall complementarity with the target nucleic acid and would thus fall within the scope of the present invention.
[0297] Percent complementarity of an antisense compound with a region of a target nucleic acid can be determined routinely using BLAST programs (basic local alignment search tools) and PowerBLAST programs known in the art (Altschul et al., J. Mol. Biol., 1990, 215, 403 410; Zhang and Madden, Genome Res., 1997, 7, 649 656). Percent homology, sequence identity or complementarity, can be determined by, for example, the Gap program (Wisconsin Sequence Analysis Package, Version 8 for Unix, Genetics Computer Group, University Research Park, Madison Wis.), using default settings, which uses the algorithm of Smith and Waterman (Adv. Appl. Math., 1981, 2, 482 489).
[0298] In certain embodiments, the antisense compounds provided herein, or specified portions thereof, are fully complementary (i.e. 100% complementary) to a target nucleic acid, or specified portion thereof. For example, antisense compound may be fully complementary to a TMPRSS6 nucleic acid, or a target region, or a target segment or target sequence thereof. As used herein, "fully complementary" means each nucleobase of an antisense compound is capable of precise base pairing with the corresponding nucleobases of a target nucleic acid. For example, a 20 nucleobase antisense compound is fully complementary to a target sequence that is 400 nucleobases long, so long as there is a corresponding 20 nucleobase portion of the target nucleic acid that is fully complementary to the antisense compound. Fully complementary can also be used in reference to a specified portion of the first and/or the second nucleic acid. For example, a 20 nucleobase portion of a 30 nucleobase antisense compound can be "fully complementary" to a target sequence that is 400 nucleobases long. The 20 nucleobase portion of the 30 nucleobase oligonucleotide is fully complementary to the target sequence if the target sequence has a corresponding 20 nucleobase portion wherein each nucleobase is complementary to the 20 nucleobase portion of the antisense compound. At the same time, the entire 30 nucleobase antisense compound may or may not be fully complementary to the target sequence, depending on whether the remaining 10 nucleobases of the antisense compound are also complementary to the target sequence.
[0299] The location of a non-complementary nucleobase may be at the 5' end or 3' end of the antisense compound. Alternatively, the non-complementary nucleobase or nucleobases may be at an internal position of the antisense compound. When two or more non-complementary nucleobases are present, they may be contiguous (i.e. linked) or non-contiguous. In one embodiment, a non-complementary nucleobase is located in the wing segment of a gapmer antisense oligonucleotide.
[0300] In certain embodiments, antisense compounds that are, or are up to, 12, 13, 14, 15, 16, 17, 18, 19, or 20 nucleobases in length comprise no more than 4, no more than 3, no more than 2, or no more than 1 non-complementary nucleobase(s) relative to a target nucleic acid, such as a TMPRSS6 nucleic acid, or specified portion thereof.
[0301] In certain embodiments, antisense compounds that are, or are up to, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, or 30 nucleobases in length comprise no more than 6, no more than 5, no more than 4, no more than 3, no more than 2, or no more than 1 non-complementary nucleobase(s) relative to a target nucleic acid, such as a TMPRSS6 nucleic acid, or specified portion thereof.
[0302] The antisense compounds provided herein also include those which are complementary to a portion of a target nucleic acid. As used herein, "portion" refers to a defined number of contiguous (i.e. linked) nucleobases within a region or segment of a target nucleic acid. A "portion" can also refer to a defined number of contiguous nucleobases of an antisense compound. In certain embodiments, the antisense compounds, are complementary to at least an 8 nucleobase portion of a target segment. In certain embodiments, the antisense compounds are complementary to at least a 12 nucleobase portion of a target segment. In certain embodiments, the antisense compounds are complementary to at least a 15 nucleobase portion of a target segment. Also contemplated are antisense compounds that are complementary to at least a 9, at least a 10, at least an 11, at least a 12, at least a 13, at least a 14, at least a 15, at least a 16, at least a 17, at least an 18, at least a 19, at least a 20, or more nucleobase portion of a target segment, or a range defined by any two of these values.
Identity
[0303] The antisense compounds provided herein may also have a defined percent identity to a particular nucleotide sequence, SEQ ID NO, or compound represented by a specific Isis number, or portion thereof. As used herein, an antisense compound is identical to the sequence disclosed herein if it has the same nucleobase pairing ability. For example, a RNA which contains uracil in place of thymidine in a disclosed DNA sequence would be considered identical to the DNA sequence since both uracil and thymidine pair with adenine. Shortened and lengthened versions of the antisense compounds described herein as well as compounds having non-identical bases relative to the antisense compounds provided herein also are contemplated. The non-identical bases may be adjacent to each other or dispersed throughout the antisense compound. Percent identity of an antisense compound is calculated according to the number of bases that have identical base pairing relative to the sequence to which it is being compared.
[0304] In certain embodiments, the antisense compounds, or portions thereof, are at least 70%, at least 75%, at least 80%, at least 85%, at least 90%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99% or 100% identical to one or more of the antisense compounds or SEQ ID NOs, or a portion thereof, disclosed herein.
Modifications
[0305] A nucleoside is a base-sugar combination. The nucleobase (also known as base) portion of the nucleoside is normally a heterocyclic base moiety. Nucleotides are nucleosides that further include a phosphate group covalently linked to the sugar portion of the nucleoside. For those nucleosides that include a pentofuranosyl sugar, the phosphate group can be linked to the 2', 3' or 5' hydroxyl moiety of the sugar. Oligonucleotides are formed through the covalent linkage of adjacent nucleosides to one another, to form a linear polymeric oligonucleotide. Within the oligonucleotide structure, the phosphate groups are commonly referred to as forming the internucleoside linkages of the oligonucleotide.
[0306] Modifications to antisense compounds encompass substitutions or changes to internucleoside linkages, sugar moieties, or nucleobases. Modified antisense compounds are often preferred over native forms because of desirable properties such as, for example, enhanced cellular uptake, enhanced affinity for nucleic acid target, increased stability in the presence of nucleases, or increased inhibitory activity.
[0307] Chemically modified nucleosides may also be employed to increase the binding affinity of a shortened or truncated antisense oligonucleotide for its target nucleic acid. Consequently, comparable results can often be obtained with shorter antisense compounds that have such chemically modified nucleosides.
Modified Internucleoside Linkages
[0308] The naturally occurring internucleoside linkage of RNA and DNA is a 3' to 5' phosphodiester linkage. Antisense compounds having one or more modified, i.e. non-naturally occurring, internucleoside linkages are often selected over antisense compounds having naturally occurring internucleoside linkages because of desirable properties such as, for example, enhanced cellular uptake, enhanced affinity for target nucleic acids, and increased stability in the presence of nucleases.
[0309] Oligonucleotides having modified internucleoside linkages include internucleoside linkages that retain a phosphorus atom as well as internucleoside linkages that do not have a phosphorus atom. Representative phosphorus containing internucleoside linkages include, but are not limited to, phosphodiesters, phosphotriesters, methylphosphonates, phosphoramidate, and phosphorothioates. Methods of preparation of phosphorous-containing and non-phosphorous-containing linkages are well known.
[0310] In certain embodiments, antisense compounds targeted to a TMPRSS6 nucleic acid comprise one or more modified internucleoside linkages. In certain embodiments, at least one of the modified internucleoside linkages are phosphorothioate linkages. In certain embodiments, each internucleoside linkage of an antisense compound is a phosphorothioate internucleoside linkage.
Modified Sugar Moieties
[0311] Antisense compounds of the invention can optionally contain one or more nucleosides wherein the sugar group has been modified. Such sugar modified nucleosides may impart enhanced nuclease stability, increased binding affinity, or some other beneficial biological property to the antisense compounds. In certain embodiments, nucleosides comprise chemically modified ribofuranose ring moieties. Examples of chemically modified ribofuranose rings include without limitation, addition of substitutent groups (including 5' and 2' substituent groups, bridging of non-geminal ring atoms to form bicyclic nucleic acids (BNA), replacement of the ribosyl ring oxygen atom with S, N(R), or C(R.sub.1)(R.sub.2) (R, R.sub.1 and R.sub.2 are each independently H, C.sub.1-C.sub.12 alkyl or a protecting group) and combinations thereof. Examples of chemically modified sugars include 2'-F-5'-methyl substituted nucleoside (see PCT International Application WO 2008/101157 Published on Aug. 21, 2008 for other disclosed 5',2'-bis substituted nucleosides) or replacement of the ribosyl ring oxygen atom with S with further substitution at the 2'-position (see published U.S. Patent Application US2005-0130923, published on Jun. 16, 2005) or alternatively 5'-substitution of a BNA (see PCT International Application WO 2007/134181 Published on Nov. 22, 2007 wherein LNA is substituted with for example a 5'-methyl or a 5'-vinyl group).
[0312] Examples of nucleosides having modified sugar moieties include without limitation nucleosides comprising 5'-vinyl, 5'-methyl (R or S), 4'-S, 2'-F, 2'-OCH.sub.3, 2'-OCH.sub.2CH.sub.3, 2'-OCH.sub.2CH.sub.2F and 2'-O(CH.sub.2).sub.2OCH.sub.3 substituent groups. The substituent at the 2' position can also be selected from allyl, amino, azido, thio, O-allyl, O--C.sub.1-C.sub.10 alkyl, OCF.sub.3, OCH.sub.2F, O(CH.sub.2).sub.2SCH.sub.3, O(CH.sub.2).sub.2--O--N(R.sub.m)(R.sub.n), O--CH.sub.2--C(.dbd.O)--N(R.sub.m)(R.sub.n), and O--CH.sub.2--C(.dbd.O)--N(R.sub.l)--(CH.sub.2).sub.2--N(R.sub.m)(R.sub.n)- , where each R.sub.l, R.sub.m and R.sub.n is, independently, H or substituted or unsubstituted C.sub.1-C.sub.10 alkyl.
[0313] As used herein, "bicyclic nucleosides" refer to modified nucleosides comprising a bicyclic sugar moiety. Examples of bicyclic nucleic acids (BNAs) include without limitation nucleosides comprising a bridge between the 4' and the 2' ribosyl ring atoms. In certain embodiments, antisense compounds provided herein include one or more BNA nucleosides wherein the bridge comprises one of the formulas: 4'-(CH.sub.2)--O-2' (LNA); 4'-(CH.sub.2)--S-2'; 4'-(CH.sub.2).sub.2--O-2' (ENA); 4'-CH(CH.sub.3)--O-2' (cEt) and 4'-CH(CH.sub.2OCH.sub.3)--O-2' (and analogs thereof see U.S. Pat. No. 7,399,845, issued on Jul. 15, 2008); 4'-C(CH.sub.3)(CH.sub.3)--O-2' (and analogs thereof see PCT/US2008/068922 published as WO/2009/006478, published Jan. 8, 2009); 4'-CH.sub.2--N(OCH.sub.3)-2' (and analogs thereof see PCT/US2008/064591 published as WO/2008/150729, published Dec. 11, 2008); 4'-CH.sub.2--O--N(CH.sub.3)-2' (see published U.S. Patent Application US2004-0171570, published Sep. 2, 2004); 4'-CH.sub.2--N(R)--O-2', wherein R is H, C.sub.1-C.sub.12 alkyl, or a protecting group (see U.S. Pat. No. 7,427,672, issued on Sep. 23, 2008); 4'-CH.sub.2--C(H)(CH.sub.3)-2' (see Zhou et al., J. Org. Chem., 2009, 74, 118-134); and 4'-CH.sub.2--C(.dbd.CH.sub.2)-2' (and analogs thereof see PCT/US2008/066154 published as WO 2008/154401, published on Dec. 8, 2008).
[0314] Further bicyclic nucleosides have been reported in published literature (see for example: Srivastava et al., J. Am. Chem. Soc., 2007, 129(26) 8362-8379; Frieden et al., Nucleic Acids Research. 2003, 21, 6365-6372; Elayadi et al., Curr. Opinion Invens. Drugs. 2001, 2, 558-561; Braasch et al., Chem. Biol., 2001, 8, 1-7; Orum et al., Curr. Opinion Mol. Ther., 2001, 3, 239-243; Wahlestedt et al., Proc. Natl. Acad. Sci. U.S.A., 2000, 97, 5633-5638; Singh et al., Chem. Commun., 1998, 4, 455-456; Koshkin et al., Tetrahedron, 1998, S4, 3607-3630; Kumar et al., Bioorg. Med. Chem. Lett., 1998, 8, 2219-2222; Singh et al., J. Org. Chem., 1998, 63, 10035-10039; U.S. Pat. Nos. 7,399,845; 7,053,207; 7,034,133; 6,794,499; 6,770,748; 6,670,461; 6,525,191; 6,268,490; U.S. Patent Publication Nos.: US2008-0039618; US2007-0287831; US2004-0171570; U.S. Patent Applications, Ser. Nos. 12/129,154; 61/099,844; 61/097,787; 61/086,231; 61/056,564; 61/026,998; 61/026,995; 60/989,574; International applications WO 2007/134181; WO 2005/021570; WO 2004/106356; WO 99/14226; and PCT International Applications Nos.: PCT/US2008/068922; PCT/US-2008/066154; and PCT/US2008/064591). Each of the foregoing bicyclic nucleosides can be prepared having one or more stereochemical sugar configurations including for example .alpha.-L-ribofuranose and .beta.-D-ribofuranose (see PCT international application PCT/DK98/00393, published on Mar. 25, 1999 as WO 99/14226).
[0315] As used herein, "monocyclic nucleosides" refer to nucleosides comprising modified sugar moieties that are not bicyclic sugar moieties. In certain embodiments, the sugar moiety, or sugar moiety analogue, of a nucleoside may be modified or substituted at any position.
[0316] As used herein, "4'-2' bicyclic nucleoside" or "4' to 2' bicyclic nucleoside" refers to a bicyclic nucleoside comprising a furanose ring comprising a bridge connecting two carbon atoms of the furanose ring connects the 2' carbon atom and the 4' carbon atom of the sugar ring.
[0317] In certain embodiments, bicyclic sugar moieties of BNA nucleosides include, but are not limited to, compounds having at least one bridge between the 4' and the 2' carbon atoms of the pentofuranosyl sugar moiety including without limitation, bridges comprising 1 or from 1 to 4 linked groups independently selected from --[C(R.sub.a)(R.sub.b)].sub.n--, --C(R.sub.a).dbd.C(R.sub.b)--, --C(R.sub.a).dbd.N--, --C(.dbd.NR.sub.a)--, --C(.dbd.O)--, --C(.dbd.S)--, --O--, --Si(R.sub.a).sub.2--, --S(.dbd.O).sub.x--, and --N(R.sub.a)--; wherein: x is 0, 1, or 2; n is 1, 2, 3, or 4; each R.sub.a and R.sub.b is, independently, H, a protecting group, hydroxyl, C.sub.1-C.sub.12 alkyl, substituted C.sub.1-C.sub.12 alkyl, C.sub.2-C.sub.12 alkenyl, substituted C.sub.2-C.sub.12 alkenyl, C.sub.2-C.sub.12 alkynyl, substituted C.sub.2-C.sub.12 alkynyl, C.sub.5-C.sub.20 aryl, substituted C.sub.5-C.sub.20 aryl, heterocycle radical, substituted heterocycle radical, heteroaryl, substituted heteroaryl, C.sub.5-C.sub.7 alicyclic radical, substituted C.sub.5-C.sub.7 alicyclic radical, halogen, OJ.sub.1, NJ.sub.1J.sub.2, SJ.sub.1, N.sub.3, COOJ.sub.1, acyl (C(.dbd.O)--H), substituted acyl, CN, sulfonyl (S(.dbd.O).sub.2-J.sub.1), or sulfoxyl (S(.dbd.O)-J.sub.1); and
[0318] each J.sub.1 and J.sub.2 is, independently, H, C.sub.1-C.sub.12 alkyl, substituted C.sub.1-C.sub.12 alkyl, C.sub.2-C.sub.12 alkenyl, substituted C.sub.2-C.sub.12 alkenyl, C.sub.2-C.sub.12 alkynyl, substituted C.sub.2-C.sub.12 alkynyl, C.sub.5-C.sub.20 aryl, substituted C.sub.5-C.sub.20 aryl, acyl (C(.dbd.O)--H), substituted acyl, a heterocycle radical, a substituted heterocycle radical, C.sub.1-C.sub.12 aminoalkyl, substituted C.sub.1-C.sub.12 aminoalkyl or a protecting group.
[0319] In certain embodiments, the bridge of a bicyclic sugar moiety is, --[C(R.sub.a)(R.sub.b)]--, --[C(R.sub.a)(R.sub.b)].sub.n--O--, --C(R.sub.aR.sub.b)--N(R)--O-- or --C(R.sub.aR.sub.b)--O--N(R)--. In certain embodiments, the bridge is 4'-CH.sub.2-2', 4'-(CH.sub.2).sub.2-2', 4'-(CH.sub.2).sub.3-2', 4'-CH.sub.2--O-2', 4'-(CH.sub.2).sub.2--O-2', 4'-CH.sub.2--O--N(R)-2' and 4'-CH.sub.2--N(R)--O-2'- wherein each R is, independently, H, a protecting group or C.sub.1-C.sub.12 alkyl.
[0320] In certain embodiments, bicyclic nucleosides are further defined by isomeric configuration. For example, a nucleoside comprising a 4'-(CH.sub.2)--O-2' bridge, may be in the .alpha.-L configuration or in the f-D configuration. Previously, .alpha.-L-methyleneoxy (4'-CH.sub.2--O-2') BNA's have been incorporated into antisense oligonucleotides that showed antisense activity (Frieden et al., Nucleic Acids Research. 2003, 21, 6365-6372).
[0321] In certain embodiments, bicyclic nucleosides include those having a 4' to 2' bridge wherein such bridges include without limitation, .alpha.-L-4'-(CH.sub.2)--O-2', .beta.-D-4'-CH.sub.2--O-2', 4'-(CH.sub.2).sub.2--O-2', 4'-CH.sub.2--O--N(R)-2', 4'-CH.sub.2--N(R)--O-2', 4'-CH(CH.sub.3)--O-2', 4'-CH.sub.2--S-2', 4'-CH.sub.2--N(R)-2', 4'-CH.sub.2--CH(CH.sub.3)-2', and 4'-(CH.sub.2).sub.3-2', wherein R is H, a protecting group or C.sub.1-C.sub.12 alkyl.
[0322] In certain embodiment, bicyclic nucleosides have the formula:
##STR00015##
wherein:
[0323] Bx is a heterocyclic base moiety;
[0324] -Q.sub.a-Q.sub.b-Q.sub.c- is --CH.sub.2--N(R.sub.c)--CH.sub.2--, --C(.dbd.O)--N(R.sub.c)--CH.sub.2--, --CH.sub.2--O--N(R.sub.c)--, --CH.sub.2--N(R.sub.c)--O-- or --N(R.sub.c)--O--CH.sub.2;
[0325] R.sub.c is C.sub.1-C.sub.12 alkyl or an amino protecting group; and
[0326] T.sub.a and T.sub.b are each, independently H, a hydroxyl protecting group, a conjugate group, a reactive phosphorus group, a phosphorus moiety or a covalent attachment to a support medium.
[0327] In certain embodiments, bicyclic nucleosides have the formula:
##STR00016##
wherein:
[0328] Bx is a heterocyclic base moiety;
[0329] T.sub.a and T.sub.b are each, independently H, a hydroxyl protecting group, a conjugate group, a reactive phosphorus group, a phosphorus moiety or a covalent attachment to a support medium;
[0330] Z.sub.a is C.sub.1-C.sub.6 alkyl, C.sub.2-C.sub.6 alkenyl, C.sub.2-C.sub.6 alkynyl, substituted C.sub.1-C.sub.6 alkyl, substituted C.sub.2-C.sub.6 alkenyl, substituted C.sub.2-C.sub.6 alkynyl, acyl, substituted acyl, substituted amide, thiol or substituted thiol.
[0331] In one embodiment, each of the substituted groups, is, independently, mono or poly substituted with substituent groups independently selected from halogen, oxo, hydroxyl, OJ.sub.c, NJ.sub.cJ.sub.d, SJ.sub.c, N.sub.3, OC(.dbd.X)J.sub.c, and NJ.sub.eC(.dbd.X)NJ.sub.cJ.sub.d, wherein each J.sub.c, J.sub.d and J.sub.e is, independently, H, C.sub.1-C.sub.6 alkyl, or substituted C.sub.1-C.sub.6 alkyl and X is O or NJ.sub.c.
[0332] In certain embodiments, bicyclic nucleosides have the formula:
##STR00017##
wherein:
[0333] Bx is a heterocyclic base moiety;
[0334] T.sub.a and T.sub.b are each, independently H, a hydroxyl protecting group, a conjugate group, a reactive phosphorus group, a phosphorus moiety or a covalent attachment to a support medium;
[0335] Z.sub.b is C.sub.1-C.sub.6 alkyl, C.sub.2-C.sub.6 alkenyl, C.sub.2-C.sub.6 alkynyl, substituted C.sub.1-C.sub.6 alkyl, substituted C.sub.2-C.sub.6 alkenyl, substituted C.sub.2-C.sub.6 alkynyl or substituted acyl (C(.dbd.O)--).
[0336] In certain embodiments, bicyclic nucleosides have the formula:
##STR00018##
wherein:
[0337] Bx is a heterocyclic base moiety;
[0338] T.sub.a and T.sub.b are each, independently H, a hydroxyl protecting group, a conjugate group, a reactive phosphorus group, a phosphorus moiety or a covalent attachment to a support medium;
[0339] R.sub.d is C.sub.1-C.sub.6 alkyl, substituted C.sub.1-C.sub.6 alkyl, C.sub.2-C.sub.6 alkenyl, substituted C.sub.2-C.sub.6 alkenyl, C.sub.2-C.sub.6 alkynyl or substituted C.sub.2-C.sub.6 alkynyl;
[0340] each q.sub.a, q.sub.b, q.sub.c and q.sub.d is, independently, H, halogen, C.sub.1-C.sub.6 alkyl, substituted C.sub.1-C.sub.6 alkyl, C.sub.2-C.sub.6 alkenyl, substituted C.sub.2-C.sub.6 alkenyl, C.sub.2-C.sub.6 alkynyl or substituted C.sub.2-C.sub.6 alkynyl, C.sub.1-C.sub.6 alkoxyl, substituted C.sub.1-C.sub.6 alkoxyl, acyl, substituted acyl, C.sub.1-C.sub.6 aminoalkyl or substituted C.sub.1-C.sub.6 aminoalkyl;
[0341] In certain embodiments, bicyclic nucleosides have the formula:
##STR00019##
wherein:
[0342] Bx is a heterocyclic base moiety;
[0343] T.sub.a and T.sub.b are each, independently H, a hydroxyl protecting group, a conjugate group, a reactive phosphorus group, a phosphorus moiety or a covalent attachment to a support medium;
[0344] q.sub.a, q.sub.b, q.sub.c and q.sub.f are each, independently, hydrogen, halogen, C.sub.1-C.sub.12 alkyl, substituted C.sub.1-C.sub.12 alkyl, C.sub.2-C.sub.12 alkenyl, substituted C.sub.2-C.sub.12 alkenyl, C.sub.2-C.sub.12 alkynyl, substituted C.sub.2-C.sub.12 alkynyl, C.sub.1-C.sub.12 alkoxy, substituted C.sub.1-C.sub.12 alkoxy, OJ.sub.j, SJ.sub.j, SOJ.sub.j, SO.sub.2J.sub.j, NJ.sub.jJ.sub.k, N.sub.3, CN, C(.dbd.O)OJ.sub.j, C(.dbd.O)NJ.sub.jJ.sub.k, C(.dbd.O)J.sub.j, O--C(.dbd.O)NJ.sub.jJ.sub.k, N(H)C(.dbd.NH)NJ.sub.jJ.sub.k, N(H)C(.dbd.O)NJ.sub.jJ.sub.k or N(H)C(.dbd.S)NJ.sub.jJ.sub.k;
[0345] or q.sub.e and q.sub.f together are .dbd.C(q.sub.g)(q.sub.h);
[0346] q.sub.g and q.sub.h are each, independently, H, halogen, C.sub.1-C.sub.12 alkyl or substituted C.sub.1-C.sub.12 alkyl.
[0347] The synthesis and preparation of adenine, cytosine, guanine, 5-methyl-cytosine, thymine and uracil bicyclic nucleosides having a 4'-CH.sub.2--O-2' bridge, along with their oligomerization, and nucleic acid recognition properties have been described (Koshkin et al., Tetrahedron, 1998, 54, 3607-3630). The synthesis of bicyclic nucleosides has also been described in WO 98/39352 and WO 99/14226.
[0348] Analogs of various bicyclic nucleosides that have 4' to 2' bridging groups such as 4'-CH.sub.2--O-2' and 4'-CH.sub.2--S-2', have also been prepared (Kumar et al., Bioorg. Med. Chem. Lett., 1998, 8, 2219-2222). Preparation of oligodeoxyribonucleotide duplexes comprising bicyclic nucleosides for use as substrates for nucleic acid polymerases has also been described (Wengel et al., WO 99/14226). Furthermore, synthesis of 2'-amino-BNA, a novel conformationally restricted high-affinity oligonucleotide analog has been described in the art (Singh et al., J. Org. Chem., 1998, 63, 10035-10039). In addition, 2'-amino- and 2'-methylamino-BNA's have been prepared and the thermal stability of their duplexes with complementary RNA and DNA strands has been previously reported.
[0349] In certain embodiments, bicyclic nucleosides have the formula:
##STR00020##
wherein:
[0350] Bx is a heterocyclic base moiety;
[0351] T.sub.a and T.sub.b are each, independently H, a hydroxyl protecting group, a conjugate group, a reactive phosphorus group, a phosphorus moiety or a covalent attachment to a support medium;
[0352] each q.sub.i, q.sub.j, q.sub.k and q.sub.l is, independently, H, halogen, C.sub.1-C.sub.12 alkyl, substituted C.sub.1-C.sub.12 alkyl, C.sub.2-C.sub.12alkenyl, substituted C.sub.2-C.sub.12 alkenyl, C.sub.2-C.sub.12 alkynyl, substituted C.sub.2-C.sub.12 alkynyl, C.sub.1-C.sub.12 alkoxyl, substituted C.sub.1-C.sub.12 alkoxyl, OJ.sub.j, SJ.sub.j, SOJ.sub.j, SO.sub.2J.sub.j, NJ.sub.jJ.sub.k, N.sub.3, CN, C(.dbd.O)OJ.sub.j, C(.dbd.O)NJ.sub.jJ.sub.k, C(.dbd.O)J.sub.j, O--C(.dbd.O)NJ.sub.jJ.sub.k, N(H)C(.dbd.NH)NJ.sub.jJ.sub.k, N(H)C(.dbd.O)NJ.sub.jJ.sub.k or N(H)C(.dbd.S)NJ.sub.jJ.sub.k; and
[0353] q.sub.i and q.sub.j or q.sub.l and q.sub.k together are .dbd.C(q.sub.g)(q.sub.h), wherein q.sub.g and q.sub.h are each, independently, H, halogen, C.sub.1-C.sub.12 alkyl or substituted C.sub.1-C.sub.12 alkyl.
[0354] One carbocyclic bicyclic nucleoside having a 4'-(CH.sub.2).sub.3-2' bridge and the alkenyl analog bridge 4'-CH.dbd.CH--CH.sub.2-2' have been described (Frier et al., Nucleic Acids Research, 1997, 25(22), 4429-4443 and Albaek et al., J. Org. Chem., 2006, 71, 7731-7740). The synthesis and preparation of carbocyclic bicyclic nucleosides along with their oligomerization and biochemical studies have also been described (Srivastava et al., J. Am. Chem. Soc. 2007, 129(26), 8362-8379).
[0355] In certain embodiments, bicyclic nucleosides include, but are not limited to, (A) .alpha.-L-methyleneoxy (4'-CH.sub.2--O-2') BNA, (B) .beta.-D-methyleneoxy (4'-CH.sub.2--O-2') BNA, (C) ethyleneoxy (4'-(CH.sub.2).sub.2--O-2') BNA, (D) aminooxy (4'-CH.sub.2--O--N(R)-2') BNA, (E) oxyamino (4'-CH.sub.2--N(R)--O-2') BNA, (F) methyl(methyleneoxy) (4'-CH(CH.sub.3)--O-2') BNA (also referred to as constrained ethyl or cEt), (G) methylene-thio (4'-CH.sub.2--S-2') BNA, (H) methylene-amino (4'-CH.sub.2--N(R)-2') BNA, (I) methyl carbocyclic (4'-CH.sub.2--CH(CH.sub.3)-2') BNA, (J) propylene carbocyclic (4'-(CH.sub.2).sub.3-2') BNA, and (K) vinyl BNA as depicted below.
##STR00021## ##STR00022##
[0356] wherein Bx is the base moiety and R is, independently, H, a protecting group, C.sub.1-C.sub.6 alkyl or C.sub.1-C.sub.6 alkoxy.
[0357] As used herein, the term "modified tetrahydropyran nucleoside" or "modified THP nucleoside" means a nucleoside having a six-membered tetrahydropyran "sugar" substituted for the pentofuiranosyl residue in normal nucleosides and can be referred to as a sugar surrogate. Modified THP nucleosides include, but are not limited to, what is referred to in the art as hexitol nucleic acid (HNA), anitol nucleic acid (ANA), manitol nucleic acid (NINA) (see Leumann, Bioorg. Med. Chem., 2002. 10, 841-854) or fluoro HNA (F-HNA) having a tetrahydropyranyl ring system as illustrated below.
##STR00023##
[0358] In certain embodiment, sugar surrogates are selected having the formula:
##STR00024##
wherein:
[0359] Bx is a heterocyclic base moiety;
[0360] T.sub.3 and T.sub.4 are each, independently, an internucleoside linking group linking the tetrahydropyran nucleoside analog to the oligomeric compound or one of T.sub.3 and T.sub.4 is an internucleoside linking group linking the tetrahydropyran nucleoside analog to an oligomeric compound or oligonucleotide and the other of T.sub.3 and T.sub.4 is H, a hydroxyl protecting group, a linked conjugate group or a 5' or 3'-terminal group;
[0361] q.sub.1, q.sub.2, q.sub.3, q.sub.4, q.sub.5, q.sub.6 and q.sub.7 are each independently, H, C.sub.1-C.sub.6 alkyl, substituted C.sub.1-C.sub.6 alkyl, C.sub.2-C.sub.6 alkenyl, substituted C.sub.2-C.sub.6 alkenyl, C.sub.2-C.sub.6 alkynyl or substituted C.sub.2-C.sub.6 alkynyl; and
[0362] one of R.sub.1 and R.sub.2 is hydrogen and the other is selected from halogen, substituted or unsubstituted alkoxy, NJ.sub.1J.sub.2, SJ.sub.1, N.sub.3, OC(.dbd.X)J.sub.1, OC(.dbd.X)NJ.sub.1J.sub.2, NJ.sub.3C(.dbd.X)NJ.sub.1J.sub.2 and CN, wherein X is O, S or NJ.sub.1 and each J.sub.1, J.sub.2 and J.sub.3 is, independently, H or C.sub.1-C.sub.6 alkyl.
[0363] In certain embodiments, q.sub.1, q.sub.2, q.sub.3, q.sub.4, q.sub.5, q.sub.6 and q.sub.7 are each H. In certain embodiments, at least one of q.sub.1, q.sub.2, q.sub.3, q.sub.4, q.sub.5, q.sub.6 and q.sub.7 is other than H. In certain embodiments, at least one of q.sub.1, q.sub.2, q.sub.3, q.sub.4, q.sub.5, q.sub.6 and q.sub.7 is methyl. In certain embodiments, THP nucleosides are provided wherein one of R.sub.1 and R.sub.2 is F. In certain embodiments, R.sub.1 is fluoro and R.sub.2 is H; R.sub.1 is methoxy and R.sub.2 is H, and R.sub.1 is methoxyethoxy and R.sub.2 is H.
[0364] In certain embodiments, sugar surrogates comprise rings having more than 5 atoms and more than one heteroatom. For example nucleosides comprising morpholino sugar moieties and their use in oligomeric compounds has been reported (see for example: Braasch et al., Biochemistry, 2002, 41, 4503-4510; and Pat. Nos. 5,698,685; 5,166,315; 5,185,444; and 5,034,506). As used here, the term "morpholino" means a sugar surrogate having the following formula:
##STR00025##
In certain embodiments, morpholinos may be modified, for example by adding or altering various substituent groups from the above morpholino structure. Such sugar surrogates are referred to herein as "modified morpholinos."
[0365] Combinations of modifications are also provided without limitation, such as 2'-F-5'-methyl substituted nucleosides (see PCT International Application WO 2008/101157 published on Aug. 21, 2008 for other disclosed 5', 2'-bis substituted nucleosides) and replacement of the ribosyl ring oxygen atom with S and further substitution at the 2'-position (see published U.S. Patent Application US2005-0130923, published on Jun. 16, 2005) or alternatively 5'-substitution of a bicyclic nucleic acid (see PCT International Application WO 2007/134181, published on Nov. 22, 2007 wherein a 4'-CH.sub.2--O-2' bicyclic nucleoside is further substituted at the 5' position with a 5'-methyl or a 5'-vinyl group). The synthesis and preparation of carbocyclic bicyclic nucleosides along with their oligomerization and biochemical studies have also been described (see, e.g., Srivastava et al., J. Am. Chem. Soc. 2007, 129(26), 8362-8379).
[0366] In certain embodiments, antisense compounds comprise one or more modified cyclohexenyl nucleosides, which is a nucleoside having a six-membered cyclohexenyl in place of the pentofuranosyl residue in naturally occurring nucleosides. Modified cyclohexenyl nucleosides include, but are not limited to those described in the art (see for example commonly owned, published PCT Application WO 2010/036696, published on Apr. 10, 2010, Robeyns et al., J. Am. Chem. Soc., 2008, 130(6), 1979-1984; Horvath et al., Tetrahedron Letters, 2007, 48, 3621-3623; Nauwelaerts et al., J. Am. Chem. Soc., 2007, 129(30), 9340-9348; Gu et al., Nucleosides, Nucleotides & Nucleic Acids, 2005, 24(S-7), 993-998; Nauwelaerts et al., Nucleic Acids Research, 2005, 33(8), 2452-2463; Robeyns et al., Acta Crystallographica, Section F: Structural Biology and Crystallization Communications, 2005, F61(6), 585-586; Gu et al., Tetrahedron, 2004, 60(9), 2111-2123; Gu et al., Oligonucleotides, 2003, 13(6), 479-489; Wang et al., J. Org. Chem., 2003, 68, 4499-4505; Verbeure et al., Nucleic Acids Research, 2001, 29(24), 4941-4947; Wang et al., J. Org. Chem., 2001, 66, 8478-82; Wang et al., Nucleosides, Nucleotides & Nucleic Acids, 2001, 20(4-7), 785-788; Wang et al., J. Am. Chem., 2000, 122, 8595-8602; Published PCT application, WO 06/047842; and Published PCT Application WO 01/049687; the text of each is incorporated by reference herein, in their entirety). Certain modified cyclohexenyl nucleosides have Formula X.
##STR00026##
[0367] wherein independently for each of said at least one cyclohexenyl nucleoside analog of Formula X:
[0368] Bx is a heterocyclic base moiety;
[0369] T.sub.3 and T.sub.4 are each, independently, an internucleoside linking group linking the cyclohexenyl nucleoside analog to an antisense compound or one of T.sub.3 and T.sub.4 is an internucleoside linking group linking the tetrahydropyran nucleoside analog to an antisense compound and the other of T.sub.3 and T4 is H, a hydroxyl protecting group, a linked conjugate group, or a 5'- or 3'-terminal group; and
[0370] q.sub.1, q.sub.2, q.sub.3, q.sub.4, q.sub.5, q.sub.6, q.sub.7, q.sub.8 and q.sub.9 are each, independently, H, C.sub.1-C.sub.6 alkyl, substituted C.sub.1-C.sub.6 alkyl, C.sub.2-C.sub.6 alkenyl, substituted C.sub.2-C.sub.6 alkenyl, C.sub.2-C.sub.6 alkynyl, substituted C.sub.2-C.sub.6 alkynyl or other sugar substituent group.
[0371] Many other monocyclic, bicyclic and tricyclic ring systems are known in the art and are suitable as sugar surrogates that can be used to modify nucleosides for incorporation into oligomeric compounds as provided herein (see for example review article: Leumann, Christian J. Bioorg. & Med. Chem., 2002, 10, 841-854). Such ring systems can undergo various additional substitutions to further enhance their activity.
[0372] As used herein, "2'-modified sugar" means a furanosyl sugar modified at the 2' position. In certain embodiments, such modifications include substituents selected from: a halide, including, but not limited to substituted and unsubstituted alkoxy, substituted and unsubstituted thioalkyl, substituted and unsubstituted amino alkyl, substituted and unsubstituted alkyl, substituted and unsubstituted allyl, and substituted and unsubstituted alkynyl. In certain embodiments, 2' modifications are selected from substituents including, but not limited to: O[(CH.sub.2).sub.nO], CH.sub.3, O(CH.sub.2).sub.nNH.sub.2, O(CH.sub.2).sub.nCH.sub.3, O(CH.sub.2).sub.nF, O(CH.sub.2).sub.nONH.sub.2, OCH.sub.2C(.dbd.O)N(H)CH.sub.3, and O(CH.sub.2).sub.nON[(CH.sub.2).sub.nCH.sub.3].sub.2, where n and m are from 1 to about 10. Other 2'-substituent groups can also be selected from: C.sub.1-C.sub.12 alkyl, substituted alkyl, alkenyl, alkynyl, alkaryl, aralkyl, O-alkaryl or O-aralkyl, SH, SCH.sub.3, OCN, Cl, Br, CN, F, CF.sub.3, OCF.sub.3, SOCH.sub.3, SO.sub.2CH.sub.3, ONO.sub.2, NO.sub.2, N.sub.3, NH.sub.2, heterocycloalkyl, heterocycloalkaryl, aminoalkylamino, polyalkylamino, substituted silyl, an RNA cleaving group, a reporter group, an intercalator, a group for improving pharmacokinetic properties, or a group for improving the pharmacodynamic properties of an antisense compound, and other substituents having similar properties. In certain embodiments, modified nucleosides comprise a 2'-MOE side chain (Baker et al., J. Biol. Chem., 1997, 272, 11944-12000). Such 2'-MOE substitution have been described as having improved binding affinity compared to unmodified nucleosides and to other modified nucleosides, such as 2'-O-methyl, O-propyl, and O-aminopropyl. Oligonucleotides having the 2'-MOE substituent also have been shown to be antisense inhibitors of gene expression with promising features for in vivo use (Martin, Helv. Chim. Acta, 1995, 78, 486-504; Altmann et al., Chimia, 1996, 50, 168-176; Altmann et al., Biochem. Soc. Trans., 1996, 24, 630-637; and Altmann et al., Nucleosides Nucleotides, 1997, 16, 917-926).
[0373] As used herein, "2'-modified" or "2'-substituted" refers to a nucleoside comprising a sugar comprising a substituent at the 2' position other than H or OH. 2'-modified nucleosides, include, but are not limited to, nucleosides with non-bridging 2' substituents, such as allyl, amino, azido, thio, O-allyl, O--C.sub.1-C.sub.10 alkyl, --OCF.sub.3, O--(CH.sub.2).sub.2O--CH.sub.3, 2'-O(CH.sub.2).sub.2SCH.sub.3, O--(CH.sub.2).sub.2--O--N(R.sub.m)(R.sub.n), or O--CH.sub.2--C(.dbd.O)--N(R.sub.m)(R.sub.n), where each R.sub.m and R.sub.n is, independently, H or substituted or unsubstituted C.sub.1-C.sub.10 alkyl. 2'-modified nucleosides may further comprise other modifications, for example at other positions of the sugar and/or at the nucleobase.
[0374] As used herein, "2'-F" refers to a nucleoside comprising a sugar comprising a fluoro group at the 2' position of the sugar ring.
[0375] As used herein, "2'-OMe" or "2'-OCH.sub.3", "2'-O-methyl" or "2'-methoxy" each refers to a nucleoside comprising a sugar comprising an --OCH.sub.3 group at the 2' position of the sugar ring.
[0376] As used herein, "MOE" or "2'-MOE" or "2'-OCH.sub.2CH.sub.2OCH.sub.3" or "2'-O-methoxyethyl" each refers to a nucleoside comprising a sugar comprising a --OCH.sub.2CH.sub.2OCH.sub.3 group at the 2' position of the sugar ring.
[0377] Methods for the preparations of modified sugars are well known to those skilled in the art. Some representative U.S. patents that teach the preparation of such modified sugars include without limitation, U.S.: 4,981,957; 5,118,800; 5,319,080; 5,359,044; 5,393,878; 5,446,137; 5,466,786; 5,514,785; 5,519,134; 5,567,811; 5,576,427; 5,591,722; 5,597,909; 5,610,300; 5,627,053; 5,639,873; 5,646,265; 5,670,633; 5,700,920; 5,792,847 and 6,600,032 and International Application PCT/US2005/019219, filed Jun. 2, 2005 and published as WO 2005/121371 on Dec. 22, 2005, and each of which is herein incorporated by reference in its entirety.
[0378] As used herein, "oligonucleotide" refers to a compound comprising a plurality of linked nucleosides. In certain embodiments, one or more of the plurality of nucleosides is modified. In certain embodiments, an oligonucleotide comprises one or more ribonucleosides (RNA) and/or deoxyribonucleosides (DNA).
[0379] In nucleotides having modified sugar moieties, the nucleobase moieties (natural, modified or a combination thereof) are maintained for hybridization with an appropriate nucleic acid target.
[0380] In certain embodiments, antisense compounds comprise one or more nucleosides having modified sugar moieties. In certain embodiments, the modified sugar moiety is 2'-MOE. In certain embodiments, the 2'-MOE modified nucleosides are arranged in a gapmer motif. In certain embodiments, the modified sugar moiety is a bicyclic nucleoside having a (4'-CH(CH.sub.3)--O-2') bridging group. In certain embodiments, the (4'-CH(CH.sub.3)--O-2') modified nucleosides are arranged throughout the wings of a gapmer motif.
Modified Nucleobases
[0381] Nucleobase (or base) modifications or substitutions are structurally distinguishable from, yet functionally interchangeable with, naturally occurring or synthetic unmodified nucleobases. Both natural and modified nucleobases are capable of participating in hydrogen bonding. Such nucleobase modifications may impart nuclease stability, binding affinity or some other beneficial biological property to antisense compounds. Modified nucleobases include synthetic and natural nucleobases such as, for example, 5-methylcytosine (5-me-C). Certain nucleobase substitutions, including 5-methylcytosine substitutions, are particularly useful for increasing the binding affinity of an antisense compound for a target nucleic acid. For example, 5-methylcytosine substitutions have been shown to increase nucleic acid duplex stability by 0.6-1.2.degree. C. (Sanghvi, Y. S., Crooke, S. T. and Lebleu, B., eds., Antisense Research and Applications, CRC Press, Boca Raton, 1993, pp. 276-278).
[0382] Additional unmodified nucleobases include 5-hydroxymethyl cytosine, xanthine, hypoxanthine, 2-aminoadenine, 6-methyl and other alkyl derivatives of adenine and guanine, 2-propyl and other alkyl derivatives of adenine and guanine, 2-thiouracil, 2-thiothymine and 2-thiocytosine, 5-halouracil and cytosine, 5-propynyl (--C.ident.C--CH.sub.3) uracil and cytosine and other alkynyl derivatives of pyrimidine bases, 6-azo uracil, cytosine and thymine, 5-uracil (pseudouracil), 4-thiouracil, 8-halo, 8-amino, 8-thiol, 8-thioalkyl, 8-hydroxyl and other 8-substituted adenines and guanines, 5-halo particularly 5-bromo, 5-trifluoromethyl and other 5-substituted uracils and cytosines, 7-methylguanine and 7-methyladenine, 2-F-adenine, 2-amino-adenine, 8-azaguanine and 8-azaadenine, 7-deazaguanine and 7-deazaadenine and 3-deazaguanine and 3-deazaadenine.
[0383] Heterocyclic base moieties may also include those in which the purine or pyrimidine base is replaced with other heterocycles, for example 7-deaza-adenine, 7-deazaguanosine, 2-aminopyridine and 2-pyridone. Nucleobases that are particularly useful for increasing the binding affinity of antisense compounds include 5-substituted pyrimidines, 6-azapyrimidines and N-2, N-6 and 0-6 substituted purines, including 2 aminopropyladenine, 5-propynyluracil and 5-propynylcytosine.
[0384] In certain embodiments, antisense compounds targeted to a TMPRSS6 nucleic acid comprise one or more modified nucleobases. In certain embodiments, gap-widened antisense oligonucleotides targeted to a TMPRSS6 nucleic acid comprise one or more modified nucleobases. In certain embodiments, at least one of the modified nucleobases is 5-methylcytosine. In certain embodiments, each cytosine is a 5-methylcytosine.
Compositions and Methods for Formulating Pharmaceutical Compositions
[0385] Antisense oligonucleotides may be admixed with pharmaceutically acceptable active or inert substance for the preparation of pharmaceutical compositions or formulations. Compositions and methods for the formulation of pharmaceutical compositions are dependent upon a number of criteria, including, but not limited to, route of administration, extent of disease, or dose to be administered.
[0386] Antisense compound targeted to a TMPRSS6 nucleic acid can be utilized in pharmaceutical compositions by combining the antisense compound with a suitable pharmaceutically acceptable diluent or carrier. A pharmaceutically acceptable diluent includes water e.g., water-for-injection (WFI). A pharmaceutically acceptable diluent includes saline e.g., phosphate-buffered saline (PBS). Water or saline is a diluent suitable for use in compositions to be delivered parenterally. Accordingly, in one embodiment, employed in the methods described herein is a pharmaceutical composition comprising an antisense compound targeted to a TMPRSS6 nucleic acid and a pharmaceutically acceptable diluent. In certain embodiments, the pharmaceutically acceptable diluent is water or saline. In certain embodiments, the antisense compound is an antisense oligonucleotide.
[0387] Pharmaceutical compositions comprising antisense compounds encompass any pharmaceutically acceptable salts, esters, or salts of such esters, or any other oligonucleotide which, upon administration to an animal, including a human, is capable of providing (directly or indirectly) the biologically active metabolite or residue thereof. Accordingly, for example, the disclosure herein is also drawn to pharmaceutically acceptable salts of antisense compounds, prodrugs, pharmaceutically acceptable salts of such prodrugs, and other bioequivalents. Suitable pharmaceutically acceptable salts include, but are not limited to, sodium and potassium salts.
[0388] Pharmaceutically acceptable salts of the compounds described herein may be prepared by methods well-known in the art. For a review of pharmaceutically acceptable salts, see Stahl and Wermuth, Handbook of Pharmaceutical Salts: Properties, Selection and Use (Wiley-VCH, Weinheim, Germany, 2002). Sodium salts of antisense oligonucleotides are useful and are well accepted for therapeutic administration to humans. Accordingly, in one embodiment the compounds described herein are in the form of a sodium salt.
[0389] A prodrug can include the incorporation of additional nucleosides at one or both ends of an antisense compound which are cleaved by endogenous nucleases within the body, to form the active antisense compound.
Dosing
[0390] In certain embodiments, pharmaceutical compositions are administered according to a dosing regimen (e.g., dose, dose frequency, and duration) wherein the dosing regimen can be selected to achieve a desired effect. The desired effect can be, for example, reduction of TMPRSS6 or the prevention, reduction, amelioration or slowing the progression of a disease, disorder or condition associated with TMPRSS6.
[0391] In certain embodiments, the variables of the dosing regimen are adjusted to result in a desired concentration of pharmaceutical composition in a subject. "Concentration of pharmaceutical composition" as used with regard to dose regimen can refer to the compound, oligonucleotide, or active ingredient of the pharmaceutical composition. For example, in certain embodiments, dose and dose frequency are adjusted to provide a tissue concentration or plasma concentration of a pharmaceutical composition at an amount sufficient to achieve a desired effect.
[0392] Dosing is dependent on severity and responsiveness of the disease state to be treated, with the course of treatment lasting from several days to several months, or until a cure is effected or a diminution of the disease state is achieved. Dosing is also dependent on drug potency and metabolism. In certain embodiments, dosage is from 0.01 .mu.g to 100 mg per kg of body weight, or within a range of 0.001 mg to 1000 mg dosing, and may be given once or more daily, weekly, biweekly, monthly, quarterly, semi-annually or yearly, or even once every 2 to 20 years. Following successful treatment, it may be desirable to have the patient undergo maintenance therapy to prevent the recurrence of the disease state, wherein the oligonucleotide is administered in maintenance doses, ranging from 0.01 .mu.g to 100 mg per kg of body weight, once or more daily, to once every 20 years or ranging from 0.001 mg to 1000 mg dosing.
Administration
[0393] The compounds or pharmaceutical compositions of the present invention can be administered in a number of ways depending upon whether local or systemic treatment is desired and upon the area to be treated. Administration can be inhaled (i.e., pulmonary), enteral (i.e., enteric), parenteral or topical.
[0394] In certain embodiments, the compounds and compositions as described herein are administered parenterally. Parenteral administration includes, but is not limited to, intravenous, intra-arterial, subcutaneous, intraperitoneal, intraocular, intramuscular, intracranial, intrathecal, intramedullary, intraventricular or intratumoral injection or infusion. Parenteral administration also includes intranasal administration.
[0395] In certain embodiments, parenteral administration is by infusion. Infusion can be chronic or continuous or short or intermittent. In certain embodiments, infused pharmaceutical agents are delivered with a pump.
[0396] In certain embodiments, parenteral administration is by injection. The injection can be delivered with a syringe or a pump. In certain embodiments, the injection is a bolus injection. In certain embodiments, the injection is administered directly to a tissue or organ.
[0397] In certain embodiments, formulations for parenteral administration can include sterile aqueous solutions which can also contain buffers, diluents and other suitable additives such as, but not limited to, penetration enhancers, carrier compounds and other pharmaceutically acceptable carriers or excipients.
[0398] In certain embodiments, the compounds and compositions as described herein are administered enterally. Enteric administration includes, but is not limited to, oral, transmucosal, intestinal or rectal (e.g., suppository, enema). In certain embodiments, formulations for enteral administration of the compounds or compositions can include, but is not limited to, pharmaceutical carriers, excipients, powders or granules, microparticulates, nanoparticulates, suspensions or solutions in water or non-aqueous media, capsules, gel capsules, sachets, tablets or minitablets. Thickeners, flavoring agents, diluents, emulsifiers, dispersing aids or binders can be desirable. In certain embodiments, enteral formulations are those in which compounds provided herein are administered in conjunction with one or more penetration enhancers, surfactants and chelators.
[0399] In certain embodiments, administration includes pulmonary administration. In certain embodiments, pulmonary administration comprises delivery of aerosolized oligonucleotide to the lung of a subject by inhalation. Following inhalation by a subject of aerosolized oligonucleotide, oligonucleotide distributes to cells of both normal and inflamed lung tissue, including alveolar macrophages, eosinophils, epithelium, blood vessel endothelium, and bronchiolar epithelium. A suitable device for the delivery of a pharmaceutical composition comprising a modified oligonucleotide includes, but is not limited to, a standard nebulizer device. Additional suitable devices include dry powder inhalers or metered dose inhalers.
[0400] In certain embodiments, pharmaceutical compositions are administered to achieve local rather than systemic exposures. For example, pulmonary administration delivers a pharmaceutical composition to the lung, with minimal systemic exposure.
Conjugated Antisense Compounds
[0401] In certain embodiments, the oligonucleotides or oligomeric compounds as provided herein are modified by covalent attachment of one or more conjugate groups. In general, conjugate groups modify one or more properties of the attached oligonucleotide or oligomeric compound including but not limited to pharmacodynamics, pharmacokinetics, stability, binding, absorption, cellular distribution, cellular uptake, charge and clearance. As used herein, "conjugate group" means a radical group comprising a group of atoms that are attached to an oligonucleotide or oligomeric compound. In general, conjugate groups modify one or more properties of the compound to which they are attached, including, but not limited to pharmacodynamic, pharmacokinetic, binding, absorption, cellular distribution, cellular uptake, charge and/or clearance properties. Conjugate groups are routinely used in the chemical arts and can include a conjugate linker that covalently links the conjugate group to an oligonucleotide or oligomeric compound. In certain embodiments, conjugate groups include a cleavable moiety that covalently links the conjugate group to an oligonucleotide or oligomeric compound. In certain embodiments, conjugate groups include a conjugate linker and a cleavable moiety to covalently link the conjugate group to an oligonucleotide or oligomeric compound. In certain embodiments, a conjugate group has the general formula:
##STR00027##
[0402] wherein n is from 1 to about 3, m is 0 when n is 1 or m is 1 when n is 2 or 3, j is 1 or 0, k is 1 or 0 and the sum of j and k is at least one.
[0403] In certain embodiments, n is 1, j is 1 and k is 0. In certain embodiments, n is 1, j is 0 and k is 1. In certain embodiments, n is 1, j is 1 and k is 1. In certain embodiments, n is 2, j is 1 and k is 0. In certain embodiments, n is 2, j is 0 and k is 1. In certain embodiments, n is 2, j is 1 and k is 1. In certain embodiments, n is 3, j is 1 and k is 0. In certain embodiments, n is 3, j is 0 and k is 1. In certain embodiments, n is 3, j is 1 and k is 1.
[0404] Conjugate groups are shown herein as radicals, providing a bond for forming covalent attachment to an oligomeric compound such as an oligonucleotide. In certain embodiments, the point of attachment on the oligomeric compound is at the 3'-terminal nucleoside or modified nucleoside. In certain embodiments, the point of attachment on the oligomeric compound is the 3'-oxygen atom of the 3'-hydroxyl group of the 3' terminal nucleoside or modified nucleoside. In certain embodiments, the point of attachment on the oligomeric compound is at the 5'-terminal nucleoside or modified nucleoside. In certain embodiments the point of attachment on the oligomeric compound is the 5'-oxygen atom of the 5'-hydroxyl group of the 5'-terminal nucleoside or modified nucleoside. In certain embodiments, the point of attachment on the oligomeric compound is at any reactive site on a nucleoside, a modified nucleoside or an internucleoside linkage.
[0405] As used herein, "cleavable moiety" and "cleavable bond" mean a cleavable bond or group of atoms that is capable of being split or cleaved under certain physiological conditions. In certain embodiments, a cleavable moiety is a cleavable bond. In certain embodiments, a cleavable moiety comprises a cleavable bond. In certain embodiments, a cleavable moiety is a group of atoms. In certain embodiments, a cleavable moiety is selectively cleaved inside a cell or sub-cellular compartment, such as a lysosome. In certain embodiments, a cleavable moiety is selectively cleaved by endogenous enzymes, such as nucleases. In certain embodiments, a cleavable moiety comprises a group of atoms having one, two, three, four, or more than four cleavable bonds.
[0406] In certain embodiments, conjugate groups comprise a cleavable moiety. In certain such embodiments, the cleavable moiety covalently attaches the oligomeric compound to the conjugate linker. In certain such embodiments, the cleavable moiety covalently attaches the oligomeric compound to the cell-targeting moiety.
[0407] In certain embodiments, a cleavable bond is selected from among: an amide, a polyamide, an ester, an ether, one or both esters of a phosphodiester, a phosphate ester, a carbamate, a di-sulfide, or a peptide. In certain embodiments, a cleavable bond is one of the esters of a phosphodiester. In certain embodiments, a cleavable bond is one or both esters of a phosphodiester. In certain embodiments, the cleavable moiety is a phosphodiester linkage between an oligomeric compound and the remainder of the conjugate group. In certain embodiments, the cleavable moiety comprises a phosphodiester linkage that is located between an oligomeric compound and the remainder of the conjugate group. In certain embodiments, the cleavable moiety comprises a phosphate or phosphodiester. In certain embodiments, the cleavable moiety is attached to the conjugate linker by either a phosphodiester or a phosphorothioate linkage. In certain embodiments, the cleavable moiety is attached to the conjugate linker by a phosphodiester linkage. In certain embodiments, the conjugate group does not include a cleavable moiety.
[0408] In certain embodiments, the cleavable moiety is a cleavable nucleoside or a modified nucleoside. In certain embodiments, the nucleoside or modified nucleoside comprises an optionally protected heterocyclic base selected from a purine, substituted purine, pyrimidine or substituted pyrimidine. In certain embodiments, the cleavable moiety is a nucleoside selected from uracil, thymine, cytosine, 4-N-benzoylcytosine, 5-methylcytosine, 4-N-benzoyl-5-methylcytosine, adenine, 6-N-benzoyladenine, guanine and 2-N-isobutyrylguanine.
[0409] In certain embodiments, the cleavable moiety is 2'-deoxy nucleoside that is attached to either the 3' or 5'-terminal nucleoside of an oligomeric compound by a phosphodiester linkage and covalently attached to the remainder of the conjugate group by a phosphodiester or phosphorothioate linkage. In certain embodiments, the cleavable moiety is 2'-deoxy adenosine that is attached to either the 3' or 5'-terminal nucleoside of an oligomeric compound by a phosphodiester linkage and covalently attached to the remainder of the conjugate group by a phosphodiester or phosphorothioate linkage. In certain embodiments, the cleavable moiety is 2'-deoxy adenosine that is attached to the 3'-oxygen atom of the 3'-hydroxyl group of the 3'-terminal nucleoside or modified nucleoside by a phosphodiester linkage. In certain embodiments, the cleavable moiety is 2'-deoxy adenosine that is attached to the 5'-oxygen atom of the 5'-hydroxyl group of the 5'-terminal nucleoside or modified nucleoside by a phosphodiester linkage. In certain embodiments, the cleavable moiety is attached to a 2'-position of a nucleoside or modified nucleoside of an oligomeric compound.
[0410] As used herein, "conjugate linker" in the context of a conjugate group means a portion of a conjugate group comprising any atom or group of atoms that covalently link the cell-targeting moiety to the oligomeric compound either directly or through the cleavable moiety. In certain embodiments, the conjugate linker comprises groups selected from alkyl, amino, oxo, amide, disulfide, polyethylene glycol, ether, thioether (--S--) and hydroxylamino (--O--N(H)--). In certain embodiments, the conjugate linker comprises groups selected from alkyl, amino, oxo, amide and ether groups. In certain embodiments, the conjugate linker comprises groups selected from alkyl and amide groups. In certain embodiments, the conjugate linker comprises groups selected from alkyl and ether groups. In certain embodiments, the conjugate linker comprises at least one phosphorus linking group. In certain embodiments, the conjugate linker comprises at least one phosphodiester group. In certain embodiments, the conjugate linker includes at least one neutral linking group.
[0411] In certain embodiments, the conjugate linker is covalently attached to the oligomeric compound. In certain embodiments, the conjugate linker is covalently attached to the oligomeric compound and the branching group. In certain embodiments, the conjugate linker is covalently attached to the oligomeric compound and a tethered ligand. In certain embodiments, the conjugate linker is covalently attached to the cleavable moiety. In certain embodiments, the conjugate linker is covalently attached to the cleavable moiety and the branching group. In certain embodiments, the conjugate linker is covalently attached to the cleavable moiety and a tethered ligand. In certain embodiments, the conjugate linker includes one or more cleavable bonds. In certain embodiments, the conjugate group does not include a conjugate linker.
[0412] As used herein, "branching group" means a group of atoms having at least 3 positions that are capable of forming covalent linkages to two or more tether-ligands and the remainder of the conjugate group. In general a branching group provides a plurality of reactive sites for connecting tethered ligands to the oligomeric compound through the conjugate linker and/or the cleavable moiety. In certain embodiments, the branching group comprises groups selected from alkyl, amino, oxo, amide, disulfide, polyethylene glycol, ether, thioether and hydroxylamino groups. In certain embodiments, the branching group comprises a branched aliphatic group comprising groups selected from alkyl, amino, oxo, amide, disulfide, polyethylene glycol, ether, thioether and hydroxylamino groups. In certain such embodiments, the branched aliphatic group comprises groups selected from alkyl, amino, oxo, amide and ether groups. In certain such embodiments, the branched aliphatic group comprises groups selected from alkyl, amino and ether groups. In certain such embodiments, the branched aliphatic group comprises groups selected from alkyl and ether groups. In certain embodiments, the branching group comprises a mono or polycyclic ring system.
[0413] In certain embodiments, the branching group is covalently attached to the conjugate linker. In certain embodiments, the branching group is covalently attached to the cleavable moiety. In certain embodiments, the branching group is covalently attached to the conjugate linker and each of the tethered ligands. In certain embodiments, the branching group comprises one or more cleavable bond. In certain embodiments, the conjugate group does not include a branching group.
[0414] In certain embodiments, conjugate groups as provided herein include a cell-targeting moiety that has at least one tethered ligand. In certain embodiments, the cell-targeting moiety comprises two tethered ligands covalently attached to a branching group. In certain embodiments, the cell-targeting moiety comprises three tethered ligands covalently attached to a branching group.
[0415] As used herein, "tether" means a group of atoms that connect a ligand to the remainder of the conjugate group. In certain embodiments, each tether is a linear aliphatic group comprising one or more groups selected from alkyl, substituted alkyl, ether, thioether, disulfide, amino, oxo, amide, phosphodiester and polyethylene glycol groups in any combination. In certain embodiments, each tether is a linear aliphatic group comprising one or more groups selected from alkyl, ether, thioether, disulfide, amino, oxo, amide and polyethylene glycol groups in any combination. In certain embodiments, each tether is a linear aliphatic group comprising one or more groups selected from alkyl, substituted alkyl, phosphodiester, ether and amino, oxo, amide groups in any combination. In certain embodiments, each tether is a linear aliphatic group comprising one or more groups selected from alkyl, ether and amino, oxo, amide groups in any combination. In certain embodiments, each tether is a linear aliphatic group comprising one or more groups selected from alkyl, amino and oxo groups in any combination. In certain embodiments, each tether is a linear aliphatic group comprising one or more groups selected from alkyl and oxo groups in any combination. In certain embodiments, each tether is a linear aliphatic group comprising one or more groups selected from alkyl and phosphodiester in any combination. In certain embodiments, each tether comprises at least one phosphorus linking group or neutral linking group.
[0416] In certain embodiments, tethers include one or more cleavable bond. In certain embodiments, each tethered ligand is attached to a branching group. In certain embodiments, each tethered ligand is attached to a branching group through an amide group. In certain embodiments, each tethered ligand is attached to a branching group through an ether group. In certain embodiments, each tethered ligand is attached to a branching group through a phosphorus linking group or neutral linking group. In certain embodiments, each tethered ligand is attached to a branching group through a phosphodiester group. In certain embodiments, each tether is attached to a ligand through either an amide or an ether group. In certain embodiments, each tether is attached to a ligand through an ether group.
[0417] In certain embodiments, each tether comprises from about 8 to about 20 atoms in chain length between the ligand and the branching group. In certain embodiments, each tether comprises from about 10 to about 18 atoms in chain length between the ligand and the branching group. In certain embodiments, each tether comprises about 13 atoms in chain length.
[0418] In certain embodiments, the present disclosure provides ligands wherein each ligand is covalently attached to the remainder of the conjugate group through a tether. In certain embodiments, each ligand is selected to have an affinity for at least one type of receptor on a target cell. In certain embodiments, ligands are selected that have an affinity for at least one type of receptor on the surface of a mammalian liver cell. In certain embodiments, ligands are selected that have an affinity for the hepatic asialoglycoprotein receptor (ASGP-R). In certain embodiments, each ligand is a carbohydrate. In certain embodiments, each ligand is, independently selected from galactose, N-acetyl galactoseamine, mannose, glucose, glucosamone and fucose.
[0419] In certain embodiments, each ligand is N-acetyl galactoseamine (GalNAc). In certain embodiments, the targeting moiety comprises 1 to 3 ligands. In certain embodiments, the targeting moiety comprises 3 ligands. In certain embodiments, the targeting moiety comprises 2 ligands. In certain embodiments, the targeting moiety comprises 1 ligand. In certain embodiments, the targeting moiety comprises 3 N-acetyl galactoseamine ligands. In certain embodiments, the targeting moiety comprises 2 N-acetyl galactoseamine ligands. In certain embodiments, the targeting moiety comprises 1 N-acetyl galactoseamine ligand.
[0420] In certain embodiments, each ligand is a carbohydrate, carbohydrate derivative, modified carbohydrate, multivalent carbohydrate cluster, polysaccharide, modified polysaccharide, or polysaccharide derivative. In certain embodiments, each ligand is an amino sugar or a thio sugar. For example, amino sugars may be selected from any number of compounds known in the art, for example glucosamine, sialic acid, .alpha.-D-galactosamine, N-Acetylgalactosamine, 2-acetamido-2-deoxy-D-galactopyranose (GalNAc), 2-Amino-3-O--[(R)-1-carboxyethyl]-2-deoxy-.beta.-D-glucopyranose (.beta.-muramic acid), 2-Deoxy-2-methylamino-L-glucopyranose, 4,6-Dideoxy-4-formamido-2,3-di-O-methyl-D-mannopyranose, 2-Deoxy-2-sulfoamino-D-glucopyranose and N-sulfo-D-glucosamine, and N-Glycoloyl-.alpha.-neuraminic acid. For example, thio sugars may be selected from the group consisting of 5-Thio-.beta.-D-glucopyranose, Methyl 2,3,4-tri-O-acetyl-1-thio-6-0-trityl-.alpha.-D-glucopyranoside, 4-Thio-.beta.-D-galactopyranose, and ethyl 3,4,6,7-tetra-O-acetyl-2-deoxy-1,5-dithio-.alpha.-D-gluco-heptopyranoside- .
[0421] In certain embodiments, conjugate groups as provided herein comprise a carbohydrate cluster. As used herein, "carbohydrate cluster" means a portion of a conjugate group wherein two or more carbohydrate residues are attached to a branching group through tether groups. (see, e.g., Maier et al., "Synthesis of Antisense Oligonucleotides Conjugated to a Multivalent Carbohydrate Cluster for Cellular Targeting," Bioconjugate Chemistry, 2003, (14): 18-29, which is incorporated herein by reference in its entirety, or Rensen et al., "Design and Synthesis of Novel N-Acetylgalactosamine-Terminated Glycolipids for Targeting of Lipoproteins to the Hepatic Asiaglycoprotein Receptor," J. Med. Chem. 2004, (47): 5798-5808, for examples of carbohydrate conjugate clusters).
[0422] As used herein, "modified carbohydrate" means any carbohydrate having one or more chemical modifications relative to naturally occurring carbohydrates.
[0423] As used herein, "carbohydrate derivative" means any compound which may be synthesized using a carbohydrate as a starting material or intermediate.
[0424] As used herein, "carbohydrate" means a naturally occurring carbohydrate, a modified carbohydrate, or a carbohydrate derivative.
[0425] In certain embodiments, conjugate groups are provided wherein the cell-targeting moiety has the formula:
##STR00028##
[0426] In certain embodiments, conjugate groups are provided wherein the cell-targeting moiety has the formula:
##STR00029##
[0427] In certain embodiments, conjugate groups are provided wherein the cell-targeting moiety has the formula:
##STR00030##
[0428] In certain embodiments, conjugate groups have the formula:
##STR00031##
[0429] Representative United States patents, United States patent application publications, and international patent application publications that teach the preparation of certain of the above noted conjugate groups, conjugated oligomeric compounds such as antisense compounds comprising a conjugate group, tethers, conjugate linkers, branching groups, ligands, cleavable moieties as well as other modifications include without limitation, U.S. Pat. Nos. 5,994,517, 6,300,319, 6,660,720, 6,906,182, 7,262,177, 7,491,805, 8,106,022, 7,723,509, US 2006/0148740, US 2011/0123520, WO 2013/033230 and WO 2012/037254, each of which is incorporated by reference herein in its entirety.
[0430] Representative publications that teach the preparation of certain of the above noted conjugate groups, conjugated oligomeric compounds such as antisense compounds comprising a conjugate group, tethers, conjugate linkers, branching groups, ligands, cleavable moieties as well as other modifications include without limitation, BIESSEN et al., "The Cholesterol Derivative of a Triantennary Galactoside with High Affinity for the Hepatic Asialoglycoprotein Receptor: a Potent Cholesterol Lowering Agent" J. Med. Chem. (1995) 38:1846-1852, BIESSEN et al., "Synthesis of Cluster Galactosides with High Affinity for the Hepatic Asialoglycoprotein Receptor" J. Med. Chem. (1995) 38:1538-1546, LEE et al., "New and more efficient multivalent glyco-ligands for asialoglycoprotein receptor of mammalian hepatocytes" Bioorganic & Medicinal Chemistry (2011) 19:2494-2500, RENSEN et al., "Determination of the Upper Size Limit for Uptake and Processing of Ligands by the Asialoglycoprotein Receptor on Hepatocytes in Vitro and in Vivo" J. Biol. Chem. (2001) 276(40):37577-37584, RENSEN et al., "Design and Synthesis of Novel N-Acetylgalactosamine-Terminated Glycolipids for Targeting of Lipoproteins to the Hepatic Asialoglycoprotein Receptor" J. Med. Chem. (2004) 47:5798-5808, SLIEDREGT et al., "Design and Synthesis of Novel Amphiphilic Dendritic Galactosides for Selective Targeting of Liposomes to the Hepatic Asialoglycoprotein Receptor" J. Med. Chem. (1999) 42:609-618, and Valentijn et al., "Solid-phase synthesis of lysine-based cluster galactosides with high affinity for the Asialoglycoprotein Receptor" Tetrahedron. 1997, 53(2). 759-770, each of which is incorporated by reference herein in its entirety.
[0431] In certain embodiments, conjugate groups include without limitation, intercalators, reporter molecules, polyamines, polyamides, polyethylene glycols, thioethers, polyethers, cholesterols, thiocholesterols, cholic acid moieties, folate, lipids, phospholipids, biotin, phenazine, phenanthridine, anthraquinone, adamantane, acridine, fluoresceins, rhodamines, coumarins and dyes. Certain conjugate groups have been described previously, for example: cholesterol moiety (Letsinger et al., Proc. Natl. Acad. Sci. USA, 1989, 86, 6553-6556), cholic acid (Manoharan et al., Bioorg. Med. Chem. Let., 1994, 4, 1053-1060), a thioether, e.g., hexyl-S-tritylthiol (Manoharan et al., Ann. N.Y. Acad. Sci., 1992, 660, 306-309; Manoharan et al., Bioorg. Med. Chem. Let., 1993, 3, 2765-2770), a thiocholesterol (Oberhauser et al., Nucl. Acids Res., 1992, 20, 533-538), an aliphatic chain, e.g., do-decan-diol or undecyl residues (Saison-Behmoaras et al., EMBO J., 1991, 10, 1111-1118; Kabanov et al., FEBS Lett., 1990, 259, 327-330; Svinarchuk et al., Biochimie, 1993, 75, 49-54), a phospholipid, e.g., di-hexadecyl-rac-glycerol or triethyl-ammonium 1,2-di-O-hexadecyl-rac-glycero-3-H-phosphonate (Manoharan et al., Tetrahedron Lett., 1995, 36, 3651-3654; Shea et al., Nucl. Acids Res., 1990, 18, 3777-3783), a polyamine or a polyethylene glycol chain (Manoharan et al., Nucleosides & Nucleotides, 1995, 14, 969-973), or adamantane acetic acid (Manoharan et al., Tetrahedron Lett., 1995, 36, 3651-3654), a palmityl moiety (Mishra et al., Biochim. Biophys. Acta, 1995, 1264, 229-237), or an octadecylamine or hexylamino-carbonyl-oxycholesterol moiety (Crooke et al., J. Pharmacol. Exp. Ther., 1996, 277, 923-937).
[0432] In certain embodiments, a conjugate group comprises an active drug substance, for example, aspirin, warfarin, phenylbutazone, ibuprofen, suprofen, fen-bufen, ketoprofen, (S)-(+)-pranoprofen, carprofen, dansylsarcosine, 2,3,5-triiodobenzoic acid, flufenamic acid, folinic acid, a benzothiadiazide, chlorothiazide, a diazepine, indo-methicin, a barbiturate, a cephalosporin, a sulfa drug, an antidiabetic, an antibacterial or an antibiotic.
[0433] Some nonlimiting examples of conjugate linkers include pyrrolidine, 8-amino-3,6-dioxaoctanoic acid (ADO), succinimidyl 4-(N-maleimidomethyl) cyclohexane-1-carboxylate (SMCC) and 6-aminohexanoic acid (AHEX or AHA). Other conjugate linkers include, but are not limited to, substituted C.sub.1-C.sub.10 alkyl, substituted or unsubstituted C.sub.2-C.sub.10 alkenyl or substituted or unsubstituted C.sub.2-C.sub.10 alkynyl, wherein a nonlimiting list of preferred substituent groups includes hydroxyl, amino, alkoxy, carboxy, benzyl, phenyl, nitro, thiol, thioalkoxy, halogen, alkyl, aryl, alkenyl and alkynyl.
[0434] Conjugate groups may be attached to either or both ends of an oligonucleotide (terminal conjugate groups) and/or at any internal position.
[0435] In certain embodiments, conjugate groups are at the 3'-end of an oligonucleotide of an oligomeric compound. In certain embodiments, conjugate groups are near the 3'-end. In certain embodiments, conjugates are attached at the 3'end of an oligomeric compound, but before one or more terminal group nucleosides. In certain embodiments, conjugate groups are placed within a terminal group.
Cell Culture and Antisense Compounds Treatment
[0436] The effects of antisense compounds on the level, activity or expression of TMPRSS6 nucleic acids can be tested in vitro in a variety of cell types. Cell types used for such analyses are available from commercial vendors (e.g., American Type Culture Collection, Manassas, Va.; Zen-Bio, Inc., Research Triangle Park, N.C.; Clonetics Corporation, Walkersville, Md.) and cells are cultured according to the vendor's instructions using commercially available reagents (e.g., Invitrogen Life Technologies, Carlsbad, Calif.). Illustrative cell types include, but are not limited to, HepG2 cells, Hep3B cells, Huh7 (hepatocellular carcinoma) cells, primary hepatocytes, A549 cells, GM04281 fibroblasts and LLC-MK2 cells.
In Vitro Testing of Antisense Oligonucleotides
[0437] Described herein are methods for treatment of cells with antisense oligonucleotides, which can be modified appropriately for treatment with other antisense compounds.
[0438] In general, cells are treated with antisense oligonucleotides when the cells reach approximately 60-80% confluence in culture.
[0439] One reagent commonly used to introduce antisense oligonucleotides into cultured cells includes the cationic lipid transfection reagent LIPOFECTIN.RTM. (Invitrogen, Carlsbad, Calif.). Antisense oligonucleotides are mixed with LIPOFECTIN.RTM. in OPTI-MEM.RTM. 1 (Invitrogen, Carlsbad, Calif.) to achieve the desired final concentration of antisense oligonucleotide and a LIPOFECTIN.RTM. concentration that typically ranges 2 to 12 ug/mL per 100 nM antisense oligonucleotide.
[0440] Another reagent used to introduce antisense oligonucleotides into cultured cells includes LIPOFECTAMINE 2000.RTM. (Invitrogen, Carlsbad, Calif.). Antisense oligonucleotide is mixed with LIPOFECTAMINE 2000.RTM. in OPTI-MEM.RTM. 1 reduced serum medium (Invitrogen, Carlsbad, Calif.) to achieve the desired concentration of antisense oligonucleotide and a LIPOFECTAMINE.RTM. concentration that typically ranges 2 to 12 ug/mL per 100 nM antisense oligonucleotide.
[0441] Another reagent used to introduce antisense oligonucleotides into cultured cells includes Cytofectin.RTM. (Invitrogen, Carlsbad, Calif.). Antisense oligonucleotide is mixed with Cytofectin.RTM. in OPTI-MEM.RTM. 1 reduced serum medium (Invitrogen, Carlsbad, Calif.) to achieve the desired concentration of antisense oligonucleotide and a Cytofectin.RTM. concentration that typically ranges 2 to 12 ug/mL per 100 nM antisense oligonucleotide.
[0442] Another reagent used to introduce antisense oligonucleotides into cultured cells includes Oligofectamine.TM. (Invitrogen Life Technologies, Carlsbad, Calif.). Antisense oligonucleotide is mixed with Oligofectamine.TM. in Opti-MEM.TM.-1 reduced serum medium (Invitrogen Life Technologies, Carlsbad, Calif.) to achieve the desired concentration of oligonucleotide with an Oligofectamine.TM. to oligonucleotide ratio of approximately 0.2 to 0.8 .mu.L per 100 nM.
[0443] Another reagent used to introduce antisense oligonucleotides into cultured cells includes FuGENE 6 (Roche Diagnostics Corp., Indianapolis, Ind.). Antisense oligomeric compound was mixed with FuGENE 6 in 1 mL of serum-free RPMI to achieve the desired concentration of oligonucleotide with a FuGENE 6 to oligomeric compound ratio of 1 to 4 .mu.L of FuGENE 6 per 100 nM.
[0444] Another technique used to introduce antisense oligonucleotides into cultured cells includes electroporation (Sambrook and Russell in Molecular Cloning. A Laboratory Manual. Third Edition. Cold Spring Harbor laboratory Press, Cold Spring Harbor, N.Y. 2001).
[0445] Cells are treated with antisense oligonucleotides by routine methods. Cells are typically harvested 16-24 hours after antisense oligonucleotide treatment, at which time RNA or protein levels of target nucleic acids are measured by methods known in the art and described herein (Sambrook and Russell in Molecular Cloning. A Laboratory Manual. Third Edition. Cold Spring Harbor laboratory Press, Cold Spring Harbor, N.Y. 2001). In general, when treatments are performed in multiple replicates, the data are presented as the average of the replicate treatments.
[0446] The concentration of antisense oligonucleotide used varies from cell line to cell line. Methods to determine the optimal antisense oligonucleotide concentration for a particular cell line are well known in the art (Sambrook and Russell in Molecular Cloning. A Laboratory Manual. Third Edition. Cold Spring Harbor laboratory Press, Cold Spring Harbor, N.Y. 2001). Antisense oligonucleotides are typically used at concentrations ranging from 1 nM to 300 nM when transfected with LIPOFECTAMINE2000.RTM., Lipofectin or Cytofectin. Antisense oligonucleotides are used at higher concentrations ranging from 625 to 20,000 nM when transfected using electroporation.
RNA Isolation
[0447] RNA analysis can be performed on total cellular RNA or poly(A)+mRNA. Methods of RNA isolation are well known in the art (Sambrook and Russell, Molecular Cloning: A Laboratory Manual, 3.sup.rd Ed., 2001). RNA is prepared using methods well known in the art, for example, using the TRIZOL.RTM. Reagent (Invitrogen, Carlsbad, Calif.) according to the manufacturer's recommended protocols.
Analysis of Inhibition of Target Levels or Expression
[0448] Inhibition of levels or expression of a TMPRSS6 nucleic acid can be assayed in a variety of ways known in the art (Sambrook and Russell, Molecular Cloning: A Laboratory Manual, 3.sup.rd Ed., 2001). For example, target nucleic acid levels can be quantitated by, e.g., Northern blot analysis, competitive polymerase chain reaction (PCR), or quantitative real-time PCR. RNA analysis can be performed on total cellular RNA or poly(A)+mRNA. Methods of RNA isolation are well known in the art. Northern blot analysis is also routine in the art. Quantitative real-time PCR can be conveniently accomplished using the commercially available ABI PRISM.RTM. 7600, 7700, or 7900 Sequence Detection System, available from PE-Applied Biosystems, Foster City, Calif. and used according to manufacturer's instructions.
Quantitative Real-Time PCR Analysis of Target RNA Levels
[0449] Quantitation of target RNA levels may be accomplished by quantitative real-time PCR using the ABI PRISM.RTM. 7600, 7700, or 7900 Sequence Detection System (PE-Applied Biosystems, Foster City, Calif.) according to manufacturer's instructions. Methods of quantitative real-time PCR are well known in the art.
[0450] Prior to real-time PCR, the isolated RNA is subjected to a reverse transcriptase (RT) reaction, which produces complementary DNA (cDNA) that is then used as the substrate for the real-time PCR amplification. The RT and real-time PCR reactions are performed sequentially in the same sample well. RT and real-time PCR reagents are obtained from Invitrogen (Carlsbad, Calif.). RT, real-time-PCR reactions are carried out by methods well known to those skilled in the art.
[0451] Gene (or RNA) target quantities obtained by real time PCR are normalized using either the expression level of a gene whose expression is constant, such as cyclophilin A, or by quantifying total RNA using RIBOGREEN.RTM. (Invitrogen, Inc. Carlsbad, Calif.). Cyclophilin A expression is quantified by real time PCR, by being run simultaneously with the target, multiplexing, or separately. Total RNA is quantified using RIBOGREEN.RTM. RNA quantification reagent (Invitrogen, Inc. Eugene, Oreg.). Methods of RNA quantification by RIBOGREEN.RTM. are taught in Jones, L. J., et al, (Analytical Biochemistry, 1998, 265, 368-374). A CYTOFLUOR.RTM. 4000 instrument (PE Applied Biosystems) is used to measure RIBOGREEN.RTM. fluorescence.
[0452] Probes and primers are designed to hybridize to a TMPRSS6 nucleic acid. Methods for designing real-time PCR probes and primers are well known in the art, and may include the use of software such as PRIMER EXPRESS.RTM. Software (Applied Biosystems, Foster City, Calif.).
Analysis of Protein Levels
[0453] Antisense inhibition of TMPRSS6 nucleic acids can be assessed by measuring TMPRSS6 protein levels. Protein levels of TMPRSS6 can be evaluated or quantitated in a variety of ways well known in the art, such as immunoprecipitation, Western blot analysis (immunoblotting), enzyme-linked immunosorbent assay (ELISA), quantitative protein assays, protein activity assays (for example, caspase activity assays), immunohistochemistry, immunocytochemistry or fluorescence-activated cell sorting (FACS) (Sambrook and Russell, Molecular Cloning: A Laboratory Manual, 3.sup.rd Ed., 2001). Antibodies directed to a target can be identified and obtained from a variety of sources, such as the MSRS catalog of antibodies (Aerie Corporation, Birmingham, Mich.), or can be prepared via conventional monoclonal or polyclonal antibody generation methods well known in the art.
In Vivo Testing of Antisense Compounds
[0454] Antisense compounds, for example, antisense oligonucleotides, are tested in animals to assess their ability to inhibit expression of TMPRSS6 and produce phenotypic changes, such as, reduced accumulation of iron in the body. Testing can be performed in normal animals, or in experimental disease models. For administration to animals, antisense oligonucleotides are formulated in a pharmaceutically acceptable diluent, such as sterile water-for-injection or phosphate-buffered saline. Administration includes parenteral routes of administration, such as intraperitoneal, intravenous, and subcutaneous. Calculation of antisense oligonucleotide dosage and dosing frequency depends upon factors such as route of administration and animal body weight. In one embodiment, following a period of treatment with antisense oligonucleotides, RNA is isolated from liver tissue and changes in TMPRSS6 nucleic acid expression are measured. Changes in TMPRSS6 protein levels can also be measured. Changes in TMPRSS6 expression can be measured by determining the level of hepcidin expression, plasma levels of iron and percentage saturation of transferrin present in the animal.
Certain Indications
[0455] Provided are compositions, compounds and methods for treating an individual comprising administering to the individual one or more compositions or compounds described herein. In certain embodiments, compositions, compounds and methods are provided for reducing TMPRSS6 expression in the individual. In certain embodiments, compositions, compounds and methods are provided for treating the individual by administering to the individual a therapeutically effective amount of a composition or compound comprising an antisense oligonucleotide targeted to a TMPRSS6 nucleic acid. In certain embodiments, the antisense compound targeted to a TMPRSS6 reduces TMPRSS6. In certain embodiments, the individual in need of TMRPSS6 reduction has, or is at risk for, an iron accumulation disease, disorder or condition. In certain embodiments, compositions, compounds and methods described herein are provided herein for use in reducing iron levels in an individual.
[0456] In certain embodiments, the iron accumulation is the result of a therapy to treat a disease, disorder or condition in the individual. In certain embodiments, the therapy is transfusion therapy. In certain embodiments, multiple transfusions may lead to polycythemia. In further embodiments, multiple blood transfusions are associated with the animal having anemia. Examples of anemia requiring multiple blood transfusions are hereditary anemia, myelodysplastic syndrome and severe chronic hemolysis. Examples of hereditary anemia include, but are not limited to, sickle cell anemia, thalassemia, Fanconi anemia, Diamond Blackfan anemia, Shwachman Diamond syndrome, red cell membrane disorders, glucose-6-phosphate dehydrogenase deficiency, or hereditary hemorrhagic telangiectasia. In certain embodiments, the thalassemia is .beta.-thalassemia. In certain embodiments, the .beta.-thalassemia is HbE/.beta.-thalassemia, .beta.-thalassemia major, .beta.-thalassemia intermedia or .beta.-thalassemia minor.
[0457] In certain embodiments, the iron accumulation is due to a disease, disorder or condition in the individual. In certain embodiments, the disease, disorder or condition is hereditary hemochromatosis or thalassemia. In certain embodiments, the thalassemia is non-transfusion dependent thalassemia (NTDT) or .beta.-thalassemia. In certain embodiments, the .beta.-thalassemia is HbE/.beta.-thalassemia, 0-thalassemia major, .beta.-thalassemia intermedia or .beta.-thalassemia minor.
[0458] In certain embodiments, the disease, disorder and/or condition is associated with excess parenteral iron supplement intake or excess dietary iron intake.
[0459] Provided herein are compositions, compounds and methods for increasing hepcidin levels, such as mRNA or protein expression levels. In certain embodiments, provided are antisense compounds targeting TMPRSS6 as described herein for use in increasing hepcidin levels, such as mRNA or protein expression levels.
[0460] Provided herein are compositions, compounds and methods for decreasing the percentage saturation of transferrin in an animal. In certain embodiments, provided are antisense compounds targeting TMPRSS6 as described herein for use in decreasing the percentage saturation of transferrin in an animal. In certain embodiments, decreasing transferrin saturation leads to a decrease in iron supply for erythropoiesis. In certain embodiments, the decrease in erythropoiesis treats, prevents, delays the onset of, ameliorates, and/or reduces polycythemia, or symptom thereof, in the animal. In certain embodiments, provided are antisense compounds targeting TMPRSS6 as described herein for use in treating, preventing, delaying the onset of, ameliorating, and/or reducing polycythemia, or symptom thereof, in the animal. In certain embodiments, the polycythemia is polycythemia vera. In certain embodiments, treatment with the antisense compound targeting TMPRSS6 prevents or delays the polycythemia from progressing into erythroid leukemia.
[0461] In certain embodiments, administration of a therapeutically effective amount of an antisense compound targeted to a TMPRSS6 nucleic acid in an individual is accompanied by monitoring of TMPRSS6 levels to determine the individual's response to the antisense compound. In certain embodiments, administration of a therapeutically effective amount of an antisense compound targeted to a TMPRSS6 nucleic acid in an individual is accompanied by monitoring the levels of hepcidin in the individual. In certain embodiments, administration of a therapeutically effective amount of an antisense compound targeted to a TMPRSS6 nucleic acid in an individual is accompanied by monitoring the levels of iron in the individual. In certain embodiments, administration of a therapeutically effective amount of an antisense compound targeted to a TMPRSS6 nucleic acid in an individual is accompanied by evaluating the percentage saturation of transferrin in the individual. An individual's response to administration of the antisense compound is used by a physician to determine the amount and duration of therapeutic intervention.
[0462] Provided herein are pharmaceutical compositions comprising an antisense compound targeted to TMPRSS6 for use in the preparation of a medicament for treating a patient suffering from, or susceptible to, an iron accumulation disease, disorder or condition.
[0463] In certain embodiments, the methods described herein include administering an antisense compound comprising a modified oligonucleotide having at least an 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19 or 20 contiguous nucleobase portion complementary to a TMPRSS6 nucleic acid.
Certain Combination Therapies
[0464] In certain embodiments, a first agent comprising a composition or compound provided herein is co-administered with one or more secondary agents. In certain embodiments, such second agents are designed to treat the same iron accumulation disease, disorder or condition as the first agent described herein. In certain embodiments, such second agents are designed to treat a different disease, disorder, or condition as the first agent described herein. In certain embodiments, such second agents are designed to treat an undesired side effect of one or more composition or compound as described herein. In certain embodiments, such first agents are designed to treat an undesired side effect of a second agent. In certain embodiments, second agents are co-administered with the first agent to treat an undesired effect of the first agent. In certain embodiments, second agents are co-administered with the first agent to produce a combinational effect. In certain embodiments, second agents are co-administered with the first agent to produce a synergistic effect. In certain embodiments, the co-administration of the first and second agents permits use of lower dosages than would be required to achieve a therapeutic or prophylactic effect if the agents were administered as independent therapy. In certain embodiments, the dose of a co-administered second agent is the same as the dose that would be administered if the second agent was administered alone. In certain embodiments, the dose of a co-administered second agent is lower than the dose that would be administered if the second agent was administered alone. In certain embodiments, the dose of a co-administered second agent is greater than the dose that would be administered if the second agent was administered alone.
[0465] In certain embodiments, a first agent and one or more second agents are administered at the same time. In certain embodiments, the first agent and one or more second agents are administered at different times. In certain embodiments, the second agent is administered prior to administration of the first agent. In certain embodiments, the second agent is administered following administration of the first agent. In certain embodiments, the first agent and one or more second agents are prepared together in a single pharmaceutical formulation. In certain embodiments, the first agent and one or more second agents are prepared separately.
[0466] In certain embodiments, second agents include, but are not limited to, nucleic acid compounds. Such nucleic acid compounds can include a siRNA, a ribozyme or an antisense compound targeting TMPRSS6 or another target.
[0467] In certain embodiments, second agents include, but are not limited to, non-antisense compounds such as iron chelators, transferrin, bone morphogenetic proteins 6 (BMP6), hepcidin agonists, stem cells, antibodies targeting TMPRSS6 or fetal hemoglobin (HbF)-raising agents. In further embodiments, iron chelators are selected from, but not limited to, FBS0701 (FerroKin), Exjade, Desferal, and Deferiprone. In certain embodiments, HBF-raising agents include 5-hydroxyl urea, short chain fatty acid (SCFA) derivatives (e.g., HQK1001), DNA methyltransferase inhibitors (e.g., decitabine) or histone deacetylase (HDAC) inhibitors (e.g., Zolina, Panobinostat).
[0468] In certain embodiments, a second agent includes, but is not limited to, phlebotomy or transfusion therapy. In certain embodiments, the first agent is administered at the same time as phlebotomy or transfusion therapy. In certain embodiments, the first agent is administered prior to phlebotomy or transfusion therapy. In certain embodiments, the first agent is administered following phlebotomy or transfusion therapy. In certain embodiments, administration of a composition or compound provided herein decreases the frequency of phlebotomy or transfusion in an individual. In certain embodiments, administration of a composition or compound provided herein increases the frequency of phlebotomy or transfusion in an individual. In certain embodiments, administration of a composition or compound provided herein decreases the length of time required for phlebotomy or transfusion.
Certain Compounds
[0469] Preferred antisense compounds with beneficial properties that enhance their use as therapeutic treatments in humans are demonstrated in the examples herein. For brevity, only the studies that contributed to the selection of the preferred antisense compounds are described. A non-exhaustive summary of the examples is provided below for ease of reference.
[0470] About 2200 antisense compounds with a MOE gapmer motif or a cEt containing motif targeting human TMPRSS6 were designed and screened in Hep3B cells for their effect on human TMPRSS6 mRNA after administering a single dose to the cells. Example 1 shows representative single dose screening data for over 100 potent antisense compounds that were selected for further studies.
[0471] Of the approximately 2200 antisense compounds tested with a single dose in vitro, about 100 antisense compounds were chosen for testing in dose-dependent inhibition studies to determine their half maximal inhibitory concentration (IC.sub.50) in Hep3B cells (Example 2).
[0472] About 77 antisense compounds were further selected, based on their potency in dose response and/or single dose studies, for study in CD-1 mice to determine tolerability (e.g., plasma chemistry markers, body weight and organ weight) of the antisense compound (Examples 3-4) in mice.
[0473] Of the approximately 77 antisense compounds tested in CD-1 mice for tolerability, about 48 antisense compounds were chosen for study in Sprague-Dawley rats to determine tolerability in rats (Example 5).
[0474] Base on the rat tolerability study, about 32 antisense compounds were selected for in vivo potency testing in human TMPRSS6 transgenic (huTMPRSS6 tg) mice (Example 6).
[0475] Antisense compounds identified as potent and tolerable in mice studies were assessed for cross-reactivity to a rhesus monkey TMPRSS6 gene sequence (Example 7). Although the antisense compounds in the studies described herein were tested in cynomolgus monkeys (Example 11), the cynomolgus monkey TMPRSS6 sequence was not available for comparison to the sequences of the antisense compounds, therefore the sequences of the antisense compounds were compared to that of the closely related rhesus monkey. About seven antisense compounds were found to have no mismatches with the rhesus TMPRSS6 gene sequence.
[0476] Based on the results of the mice potency and tolerability studies, and homology to the rhesus monkey sequence, the sequences of seven antisense compounds (585774, 585683, 585775, 630718, 647477, 647449, 647420) from the prior studies were selected for further chemical modification to make them more potent in reducing TMPRSS6 levels. Eight new antisense compounds with a GalNAc conjugate (702843, 705051, 705052, 705053, 706940, 706941, 706942, 706943) were designed based on the seven original antisense compounds (Example 7).
[0477] The eight GalNAc conjugated antisense compounds were tested in mice: for tolerability in CD-1 mice (e.g., body weights, organ weights, liver metabolic markers (e.g., ALT, AST and bilirubin), kidney metabolic markers (e.g., BUN and creatinine), histology, hematology parameters (e.g., blood cell counts and hematocrit), and the like were measured (Example 8); and, for potency in human TMPRSS6 transgenic mice (Example 9).
[0478] The eight GalNAc conjugated antisense compounds were also assessed for viscosity and seven of the eight were found to have a favorable viscosity level while one was found to have a borderline acceptable viscosity level (Example 10).
[0479] Based on the favorable profile seen in the mice and in vitro viscosity studies, the eight GalNAc conjugated antisense compounds were further tested for potency in reducing TMPRSS6, tolerability and for their effect on iron parameters (e.g., hepcidin levels, serum iron and transferrin saturation) in cynomolgus monkeys (Example 11). The eight GalNAc conjugated antisense compounds were generally found to be potent and tolerable in cynomolgus monkeys. Antisense compounds 705051, 702843, 706942 and 706943 were found to be especially potent in reducing TMRPSS6, serum iron and transferrin saturation.
[0480] Accordingly, provided herein are antisense compounds with any one or more characteristics that are beneficial for their use as a therapeutic agent. In certain embodiments, provided herein are antisense compounds comprising a modified oligonucleotide as described herein targeted to, or specifically hybridizable with, a region of nucleotides selected from any of SEQ ID NOs: 1-6.
[0481] In certain embodiments, certain antisense compounds as described herein are efficacious by virtue of their potency in inhibiting TMPRSS6 expression. In certain embodiments, the compounds or compositions inhibit TMPRSS6 by at least 40%, at least 45%, at least 50%, at least 55%, at least 60%, at least 65%, at least 70%, at least 75%, at least 80%, at least 85%, at least 90% or at least 95%.
[0482] In certain embodiments, certain antisense compounds as described herein are efficacious by virtue of an in vitro IC.sub.50 of less than 20 .mu.M, less than 10 .mu.M, less than 8 .mu.M, less than 5 .mu.M, less than 2 .mu.M, less than 1 .mu.M, less than 0.9 .mu.M, less than 0.8 .mu.M, less than 0.7 .mu.M, less than 0.6 .mu.M, or less than 0.5 .mu.M when tested in human cells, for example, in the Hep3B cell line (as described in Example 2).
[0483] In certain embodiments, certain antisense compounds as described herein are efficacious by virtue of a median effective dose (ED.sub.50) of 5 mpk/wk, 4 mpk/wk, 3 mpk/wk, 2 mpk/wk or 1 mpk/wk in vivo. In certain embodiments, preferred antisense compounds having an ED.sub.50 1 mpk/wk include antisense compounds 702843, 706940, 706942 and 706943 as described in Example 8.
[0484] In certain embodiments, certain antisense compounds as described herein are efficacious by virtue of having a viscosity of less than 40 cP, less than 35 cP, less than 30 cP, less than 25 cP, less than 20 cP, less than 15 cP, or less than 10 cP as described in Example 9. Oligonucleotides having a viscosity greater than 40 cP would have less than optimal viscosity.
[0485] In certain embodiments, certain antisense compounds as described herein are highly tolerable, as demonstrated by the in vivo tolerability measurements described in the examples. In certain embodiments, the certain antisense compounds as described herein are highly tolerable, as demonstrated by having an increase in ALT and/or AST value of no more than 3 fold, 2 fold or 1.5 fold over saline treated animals.
[0486] In certain embodiments, certain antisense compounds as described herein are efficacious by virtue of having one or more of an inhibition potency of greater than 50%, an ED.sub.50.ltoreq.1 mpk/wk, a viscosity of less than 40 cP, and no more than a 3 fold increase in ALT and/or AST in transgenic mice.
[0487] In certain embodiments, ISIS 702843 (SEQ ID NO: 36) is preferred. This compound was found to be a potent inhibitor in TMPRSS6 transgenic mice and a very tolerable antisense compound in CD-1 mice. In mice it had less than a 3 fold increase in ALT and/or AST levels over saline treated animals. It had an acceptable viscosity of about 33 cP and an ED.sub.50.ltoreq.1 mpk/wk in huTMPRSS6 transgenic mice. Also, in monkeys, it was among the most potent compounds in inhibiting TMPRSS6.
[0488] In certain embodiments, ISIS 705051 (SEQ ID NO: 36) is preferred. This compound was found to be a potent inhibitor in TMPRSS6 transgenic mice and a very tolerable antisense compound in CD-1 mice. In mice it had less than a 3 fold increase in ALT and/or AST levels over saline treated animals. It had an acceptable viscosity of about 23 cP and an ED.sub.50.ltoreq.3 mpk/wk in huTMPRSS6 transgenic mice. Also, in monkeys, it was among the most potent compounds in inhibiting TMPRSS6.
[0489] In certain embodiments, ISIS 706942 (SEQ ID NO: 77) is preferred. This compound was found to be a potent inhibitor in TMPRSS6 transgenic mice and a very tolerable antisense compound in CD-1 mice. In mice it had less than a 3 fold increase in ALT and/or AST levels over saline treated animals. It had an acceptable viscosity of about 20 cP and an ED.sub.50.ltoreq.1 mpk/wk in huTMPRSS6 transgenic mice. Also, in monkeys, it was among the most potent compounds in inhibiting TMPRSS6.
[0490] In certain embodiments, ISIS 706943 (SEQ ID NO: 77) is preferred. This compound was found to be a potent inhibitor in TMPRSS6 transgenic mice and a very tolerable antisense compound in CD-1 mice. In huTMPRSS6 transgenic mice it had less than a 3 fold increase in ALT and/or AST levels over saline treated animals. It had an acceptable viscosity of about 19 cP and an ED.sub.50.ltoreq.1 mpk/wk in huTMPRSS6 transgenic mice. Also, in monkeys, it was among the most potent compounds in inhibiting TMPRSS6.
EXAMPLES
Non-Limiting Disclosure and Incorporation by Reference
[0491] While certain compounds, compositions and methods described herein have been described with specificity in accordance with certain embodiments, the following examples serve only to illustrate the compounds described herein and are not intended to limit the same. Each of the references recited in the present application is incorporated herein by reference in its entirety.
Example 1: Antisense Oligonucleotides Targeting Human Type II Transmembrane Serine Protease 6 (TMPRSS6)
[0492] Approximately 2200 newly designed chimeric antisense oligonucleotides were designed as 5-10-5 MOE gapmers or cET containing gapmers.
[0493] The 5-10-5 MOE gapmers were designed as oligonucleotides 20 nucleosides in length, wherein the central gap segment comprises ten 2'-deoxynucleosides and is flanked by wing segments on the 5' direction and the 3' direction comprising five nucleosides each. Each nucleoside in the 5' wing segment and each nucleoside in the 3' wing segment has a 2'-MOE modification. The internucleoside linkages throughout each gapmer are phosphorothioate (P.dbd.S) linkages. All cytosine residues throughout each gapmer are 5-methylcytosines.
[0494] The cET containing gapmers were designed with varied deoxy, MOE, and (S)-cEt gapmer motifs. The deoxy, MOE and (S)-cEt oligonucleotides are 16 nucleosides in length wherein the nucleosides have either a MOE sugar modification, an (S)-cEt sugar modification, or a deoxyribose. The `Chemistry` column in Table 3 describes the sugar modifications of each oligonucleotide. `k` indicates an (S)-cEt sugar modification; `d` indicates deoxyribose; and `e` indicates a MOE modification. Unless otherwise specified, the internucleoside linkages throughout each gapmer are phosphorothioate (P.dbd.S) linkages. All cytosine residues throughout each gapmer are 5-methylcytosines.
[0495] "Start site" indicates the 5'-most nucleoside to which the gapmer is targeted in the human gene sequence. "Stop site" indicates the 3'-most nucleoside to which the gapmer is targeted human gene sequence. Each gapmer listed in the Tables below is targeted to either the human TMPRSS6 mRNA, designated herein as SEQ ID NO: 1 (GENBANK Accession No. NM_153609.2) or the human TMPRSS6 genomic sequence, designated herein as SEQ ID NO: 2 (the complement of GENBANK Accession No. NT_011520.12 truncated from nucleotide 16850000 to 16897000). In the tables below, `n/a` indicates that the antisense oligonucleotide does not target that particular gene sequence with 100% complementarity.
[0496] The 2200 chimeric antisense oligonucleotides were tested for their single dose effects on TMRPSS6 mRNA in vitro. Antisense oligonucleotides were tested at least once in a series of experiments that had similar culture conditions.
[0497] A representative result for about 110 potent antisense oligonucleotides out of the 2200 tested is presented in Tables 1-3 shown below. These potent antisense oligonucleotides were selected for further studies as described below.
[0498] Table 1 shows the percent inhibition of TMPRSS6 mRNA by 5-10-5 MOE gapmers. Cultured Hep3B cells at a density of about 20,000 cells per well were transfected using electroporation with 4,500 nM antisense oligonucleotide. After a treatment period of approximately 24 hours, RNA was isolated from the cells and TMPRSS6 mRNA levels were measured by quantitative real-time PCR. Human primer probe set RTS3840 (forward sequence CAAAGCCCAGAAGATGCTCAA, designated herein as SEQ ID NO: 92; reverse sequence GGAATAGACGGAGCTGGAGTTG, designated herein as SEQ ID NO: 93; probe sequence ACCAGCACCCGCCTGGGAACTT, designated herein as SEQ ID NO: 94) was used to measure mRNA levels. TMPRSS6 mRNA levels were adjusted according to total RNA content, as measured by RIBOGREEN.RTM.. Results are presented as percent inhibition of TMPRSS6, relative to untreated control cells.
TABLE-US-00002 TABLE 1 Inhibition of TMPRSS6 mRNA by 5-10-5 MOE gapmers targeting SEQ ID NO: 1 and/or 2 SEQ ID SEQ ID SEQ ID SEQ ID NO: 1 NO: 1 NO: 2 NO: 2 ISIS Start Stop Start Stop % SEQ ID NO Sequence Site Site Site Site Inhibition NO 585604 CCATCACCTCCGTCCCCCTG 178 197 7011 7030 58 7 585606 TCCGCTTCCTCGCCATCACC 190 209 7023 7042 51 8 585608 TTTTCTCTTGGAGTCCTCAC 233 252 7066 7085 52 9 585609 GCTTTTCTCTTGGAGTCCTC 235 254 7068 7087 79 10 585611 CCGGGCTTTTCTCTTGGAGT 239 258 7072 7091 58 11 585626 GGCTTTGGCGGTTTCACTGC 449 468 11948 11967 79 12 585629 GAGCATCTTCTGGGCTTTGG 461 480 N/A N/A 80 13 585631 CCTTGAGCATCTTCTGGGCT 465 484 N/A N/A 84 14 585649 AGTGCCTGCACCACCTCGGG 616 635 14372 14391 79 15 585651 CAGCAGTGCCTGCACCACCT 620 639 14376 14395 70 16 585653 TCCTCCACCAGCAGTGCCTG 628 647 14384 14403 49 17 585654 AGCTCCTCCACCAGCAGTGC 631 650 14387 14406 64 18 585655 CAGCAGCTCCTCCACCAGCA 635 654 14391 14410 66 19 585667 GCTGTGCAGGCCCTTCTTCC 1049 1068 24044 24063 52 20 585668 GTAGTAGCTGTGCAGGCCCT 1055 1074 24050 24069 61 21 585682 ACGGCAAATCATACTTCTGC 1284 1303 26044 26063 60 22 585683 GCACGGCAAATCATACTTCT 1286 1305 26046 26065 58 23 585684 CCCTGGGTGCACGGCAAATC 1294 1313 26054 26073 58 24 585698 CAAACGCAGTTTCTCTCATC 1567 1586 N/A N/A 52 25 585699 TGCAAACGCAGTTTCTCTCA 1569 1588 N/A N/A 52 26 585752 GATCACACCTGTGATGCGGG 2504 2523 44266 44285 48 27 585757 CTCCTGCCACCACAGGGCCT 2656 2675 44418 44437 70 28 585758 ACCTCCTGCCACCACAGGGC 2658 2677 44420 44439 69 29 585761 TGCCATCACTGGAGCAGACA 2699 2718 44461 44480 60 30 585762 ATCCTCCTGCCATCACTGGA 2706 2725 44468 44487 38 31 585768 TCCATTCCCAGATCCCAAGT 2978 2997 44740 44759 64 32 585769 CTTCCATTCCCAGATCCCAA 2980 2999 44742 44761 62 33 585770 ACCTTCCATTCCCAGATCCC 2982 3001 44744 44763 52 34 585772 CAAAGGGCAGCTGAGCTCAC 3154 3173 44916 44935 47 35 585774 CTTTATTCCAAAGGGCAGCT 3162 3181 44924 44943 67 36 585775 AGCTTTATTCCAAAGGGCAG 3164 3183 44926 44945 68 37 585776 AGGCAGCTTTATTCCAAAGG 3168 3187 44930 44949 59 38 585777 GATCAGGCAGCTTTATTCCA 3172 3191 44934 44953 65 39 585831 AGGAGCGGCCACCGTCCTGT N/A N/A 12340 12359 45 40 12371 12390 12562 12581 585834 GGCAGGAGCGGCCACCGTCC N/A N/A 12343 12362 42 41 12374 12393 12565 12584 585863 TCCCCCTGAGGCTCTCAGGA N/A N/A 16233 16252 32 42 18737 18756 585864 TAAGTCCCCCTGAGGCTCTC N/A N/A 16237 16256 39 43 18741 18760 585906 AAGACTGTTCCTTCTCCTTT N/A N/A 27990 28009 44 44 585912 CAGCTTGTGCCTGCCCAGAG N/A N/A 29208 29227 45 45 585932 AGTCTATCTGGCCACAGTGA N/A N/A 32981 33000 34 46 585937 GGTCCTTCTTTGAGCCTCAC N/A N/A 34800 34819 35 47
[0499] Table 2 shows the percent inhibition of TMPRSS6 mRNA by additional 5-10-5 MOE gapmers. Cultured Hep3B cells at a density of about 20,000 cells per well were transfected using electroporation with 5,000 nM antisense oligonucleotide. After a treatment period of approximately 24 hours, RNA was isolated from the cells and TMPRSS6 mRNA levels were measured by quantitative real-time PCR. Human primer probe set RTS3840 was used to measure mRNA levels. TMPRSS6 mRNA levels were adjusted according to total RNA content, as measured by RIBOGREEN.RTM.. Results are presented as percent inhibition of TMPRSS6, relative to untreated control cells.
TABLE-US-00003 TABLE 2 Inhibition of TMPRSS6 mRNA by 5-10-5 MOE gapmers targeting SEQ ID NO: 1 and/or 2 SEQ ID SEQ ID SEQ ID SEQ ID NO: 1 NO: 1 NO: 2 NO: 2 ISIS Start Stop Start Stop % SEQ ID NO Sequence Site Site Site Site Inhibition NO 591466 CCTCAGGTCACCACTTGCTG 2533 2552 44295 44314 63 48 591491 GCCACCTCCTGCCACCACAG 2661 2680 44423 44442 72 49 591492 ATGCCACCTCCTGCCACCAC 2663 2682 44425 44444 59 50 591514 CTCCATCCTCCTGCCATCAC 2710 2729 44472 44491 59 51 591536 GCAGCTGAGCTCACCTCCCA 3148 3167 44910 44929 68 52 591537 GGCAGCTGAGCTCACCTCCC 3149 3168 44911 44930 75 53 591549 GGCAGCTTTATTCCAAAGGG 3167 3186 44929 44948 69 54 591550 CAGGCAGCTTTATTCCAAAG 3169 3188 44931 44950 76 55 591552 ATCAGGCAGCTTTATTCCAA 3171 3190 44933 44952 66 56 591578 CCACTGGCCCTGGGTGCACG 1301 1320 26061 26080 65 57 591579 TCCACTGGCCCTGGGTGCAC 1302 1321 26062 26081 68 58
[0500] Table 3 shows the percent inhibition of TMPRSS6 mRNA by cEt containing gapmers from a series of experiments. Cultured Hep3B cells at a density of about 20,000 cells per well were transfected using electroporation with 2,000 nM antisense oligonucleotide. After a treatment period of approximately 24 hours, RNA was isolated from the cells and TMPRSS6 mRNA levels were measured by quantitative real-time PCR. Human primer probe set RTS3840 was used to measure mRNA levels. TMPRSS6 mRNA levels were adjusted according to total RNA content, as measured by RIBOGREEN.RTM.. Results are presented as percent inhibition of TMPRSS6, relative to untreated control cells.
TABLE-US-00004 TABLE 3 Inhibition of TMPRSS6 mRNA by cEt containing gapmers targeting SEQ ID NO: 1 and/or 2 SEQ ID SEQ ID SEQ ID SEQ ID NO: 1 NO: 1 NO: 2 NO: 2 ISIS Start Stop Start Stop % SEQ ID NO Sequence Site Site Site Site Chemistry Inhibition NO 615840 CTTTTGGCTTACAGTG 3057 3072 44819 44834 ekk-d10-kke 59 59 615884 GCTGAGCTCACCTCCC 3149 3164 44911 44926 ekk-d10-kke 70 60 615898 TATTCCAAAGGGCAGC 3163 3178 44925 44940 ekk-d10-kke 69 61 615901 CTTTATTCCAAAGGGC 3166 3181 44928 44943 ekk-d10-kke 68 62 615903 AGCTTTATTCCAAAGG 3168 3183 44930 44945 ekk-d10-kke 70 63 615909 TCAGGCAGCTTTATTC 3174 3189 44936 44951 ekk-d10-kke 69 64 615910 ATCAGGCAGCTTTATT 3175 3190 44937 44952 ekk-d10-kke 69 65 615911 GATCAGGCAGCTTTAT 3176 3191 44938 44953 ekk-d10-kke 69 66 630497 ATTCCAAAGGGCAGCT 3162 3177 44924 44939 kkk-d10-kkk 80 67 630689 CTTACAGTGGCAGCAG 3050 3065 44812 44827 kkk-d10-kkk 71 68 630692 TGGCTTACAGTGGCAG 3053 3068 44815 44830 kkk-d10-kkk 75 69 630693 TTGGCTTACAGTGGCA 3054 3069 44816 44831 kkk-d10-kkk 75 70 630696 CTTTTGGCTTACAGTG 3057 3072 44819 44834 kkk-d10-kkk 66 59 630716 CTTTATTCCAAAGGGC 3166 3181 44928 44943 kkk-d10-kkk 63 62 630717 GCTTTATTCCAAAGGG 3167 3182 44929 44944 kkk-d10-kkk 81 71 630718 AGCTTTATTCCAAAGG 3168 3183 44930 44945 kkk-d10-kkk 84 63 630719 CAGGCAGCTTTATTCC 3173 3188 44935 44950 kkk-d10-kkk 80 72 630722 GATCAGGCAGCTTTAT 3176 3191 44938 44953 kkk-d10-kkk 72 66 630725 TTTGATCAGGCAGCTT 3179 3194 N/A N/A kkk-d10-kkk 61 73 630726 TTTTGATCAGGCAGCT 3180 3195 N/A N/A kkk-d10-kkk 72 74 630727 TTTTTGATCAGGCAGC 3181 3196 N/A N/A kkk-d10-kkk 73 75 630794 ACATCAGGGACGAGAC 2686 2701 44448 44463 kk-d8-kekeke 72 76 647393 TTATTCCAAAGGGCAG 3164 3179 44926 44941 kkk-d10-kkk 78 83 647394 TTTATTCCAAAGGGCA 3165 3180 44927 44942 kkk-d10-kkk 77 84 647395 CAGCTTTATTCCAAAG 3169 3184 44931 44946 kkk-d10-kkk 86 77 647396 GCAGCTTTATTCCAAA 3170 3185 44932 44947 kkk-d10-kkk 86 78 647397 GGCAGCTTTATTCCAA 3171 3186 44933 44948 kkk-d10-kkk 85 82 647398 AGGCAGCTTTATTCCA 3172 3187 44934 44949 kkk-d10-kkk 82 79 647404 GGCAGCTGAGCTCACC 3153 3168 44915 44930 kek-d9-eekk 76 85 647414 TATTCCAAAGGGCAGC 3163 3178 44925 44940 kek-d9-eekk 86 61 647419 AGCTTTATTCCAAAGG 3168 3183 44930 44945 kek-d9-eekk 87 63 647420 CAGCTTTATTCCAAAG 3169 3184 44931 44946 kek-d9-eekk 83 77 647421 GCAGCTTTATTCCAAA 3170 3185 44932 44947 kek-d9-eekk 83 78 647423 AGGCAGCTTTATTCCA 3172 3187 44934 44949 kek-d9-eekk 84 79 647424 CAGGCAGCTTTATTCC 3173 3188 44935 44950 kek-d9-eekk 78 72 647426 ATCAGGCAGCTTTATT 3175 3190 44937 44952 kek-d9-eekk 81 65 647428 TGATCAGGCAGCTTTA 3177 3192 N/A N/A kek-d9-eekk 76 80 647429 TTGATCAGGCAGCTTT 3178 3193 N/A N/A kek-d9-eekk 78 81 647442 ATTCCAAAGGGCAGCT 3162 3177 44924 44939 kk-d9-eeekk 81 67 647446 CTTTATTCCAAAGGGC 3166 3181 44928 44943 kk-d9-eeekk 79 62 647447 GCTTTATTCCAAAGGG 3167 3182 44929 44944 kk-d9-eeekk 87 71 647448 AGCTTTATTCCAAAGG 3168 3183 44930 44945 kk-d9-eeekk 86 63 647449 CAGCTTTATTCCAAAG 3169 3184 44931 44946 kk-d9-eeekk 89 77 647450 GCAGCTTTATTCCAAA 3170 3185 44932 44947 kk-d9-eeekk 88 78 647451 GGCAGCTTTATTCCAA 3171 3186 44933 44948 kk-d9-eeekk 88 82 647453 CAGGCAGCTTTATTCC 3173 3188 44935 44950 kk-d9-eeekk 77 72 647454 TCAGGCAGCTTTATTC 3174 3189 44936 44951 kk-d9-eeekk 82 64 647457 TGATCAGGCAGCTTTA 3177 3192 N/A N/A kk-d9-eeekk 78 80 647475 CTTTATTCCAAAGGGC 3166 3181 44928 44943 kk-d8-eeeekk 77 62 647476 GCTTTATTCCAAAGGG 3167 3182 44929 44944 kk-d8-eeeekk 83 71 647477 AGCTTTATTCCAAAGG 3168 3183 44930 44945 kk-d8-eeeekk 84 63 647478 CAGCTTTATTCCAAAG 3169 3184 44931 44946 kk-d8-eeeekk 79 77 647482 CAGGCAGCTTTATTCC 3173 3188 44935 44950 kk-d8-eeeekk 76 72 647506 AGCTTTATTCCAAAGG 3168 3183 44930 44945 k-d9-kekeke 89 63 647508 GCAGCTTTATTCCAAA 3170 3185 44932 44947 k-d9-kekeke 77 78 647514 GATCAGGCAGCTTTAT 3176 3191 44938 44953 k-d9-kekeke 78 66 647531 CAGCTTTATTCCAAAG 3169 3184 44931 44946 kk-d8-kekeke 88 77 647532 GCAGCTTTATTCCAAA 3170 3185 44932 44947 kk-d8-kekeke 77 78
Example 2: Dose Response of Antisense Oligonucleotides Targeting Human TMPRSS6 in Hep3B Cells
[0501] About 100 antisense oligonucleotides selected from the about 2200 antisense oligonucleotides tested in single dose experiments described in Example 1 were also tested at various doses in Hep3B cells in studies of in vitro inhibition of human TMPRSS6 mRNA.
[0502] For the experiment in Table 4, below, cells were plated at a density of 12,000 cells per well and transfected using electroporation with 0.15 .mu.M, 0.44 .mu.M, 1.33 .mu.M, 4.00 .mu.M and 12.00 .mu.M concentrations of antisense oligonucleotide. After the treatment period of approximately 16 hours, RNA was isolated from the cells and TMPRSS6 mRNA levels were measured by quantitative real-time PMR Human primer probe set RTS3840 was used to measure mRNA levels. TMPRSS6 mRNA levels were adjusted according to total RNA content, as measured by RIBOGREEN.RTM.. Results are presented as percent inhibition of TMPRSS6, relative to untreated control cells. "0" indicate that the antisense oligonucleotide did not reduce TMPRSS6 mRNA levels.
[0503] The half maximal inhibitory concentration (IC.sub.50) of each oligonucleotide is also presented. TMPRSS6 mRNA levels were significantly reduced in a dose-dependent manner in antisense oligonucleotide treated cells.
TABLE-US-00005 TABLE 4 Dose response assay with 5-10-5 MOE gapmers 0.15 0.44 1.33 4.00 12.00 IC.sub.50 ISIS No .mu.M .mu.M .mu.M .mu.M .mu.M (.mu.M) 585604 0 0 17 36 63 7 585606 0 0 0 0 35 >12 585608 0 13 6 8 50 >12 585609 0 10 24 44 68 5 585611 0 0 9 33 67 8 585626 3 21 27 55 82 3 585629 37 45 56 71 83 1 585631 29 56 63 70 84 1 585649 0 9 35 46 74 4 585651 0 18 1 39 75 6 585653 10 15 18 42 63 7 585654 0 0 25 33 65 8 585655 0 12 15 34 65 8 585667 0 0 2 30 52 >12 585668 11 6 0 43 70 8 585682 0 0 0 30 63 11 585683 1 9 19 39 77 5 585684 6 1 13 21 57 >12 585698 13 11 37 39 78 4 585699 0 8 25 25 65 8 585752 0 12 37 34 69 5 585757 0 7 16 53 79 4 585758 6 0 25 49 71 5 585761 2 12 13 39 66 7 585762 2 15 26 44 75 4 585768 4 0 20 52 76 4 585769 0 0 0 42 70 7 585770 12 12 42 50 68 3 585772 12 12 23 34 56 12 585774 15 28 58 68 84 1 585775 0 7 28 60 82 3 585776 36 24 56 69 86 1 585777 15 39 63 76 88 1 585831 0 8 3 19 31 >12 585834 0 10 3 6 32 >12 585863 7 7 3 0 51 >12 585864 5 9 19 31 34 >12 585906 13 2 16 11 29 >12 585912 20 0 30 33 32 >12 585932 15 11 25 4 37 >12 585937 20 33 30 30 43 >12 591466 0 14 26 39 71 5 591491 0 11 23 45 68 5 591492 0 0 22 27 64 9 591514 0 0 1 41 75 6 591536 13 22 34 64 81 2 591537 17 44 57 81 88 1 591549 21 26 51 72 87 1 591550 19 34 65 76 89 1 591552 23 49 65 86 90 1 591578 0 17 28 45 55 7 591579 3 13 47 40 58 6
[0504] For the experiment in Table 5, below, cells were plated at a density of 5,000 cells per well and transfected using electroporation with 0.19 .mu.M, 0.56 .mu.M, 1.67 .mu.M and 5.0 .mu.M concentrations of antisense oligonucleotide. After the treatment period of approximately 16 hours, RNA was isolated from the cells and TMPRSS6 mRNA levels were measured by quantitative real-time PCR. Human primer probe set RTS3840 was again used to measure mRNA levels. TMPRSS6 mRNA levels were adjusted according to total RNA content, as measured by RIBOGREEN.RTM.. Results are presented as percent inhibition of TMPRSS6, relative to untreated control cells.
[0505] The half maximal inhibitory concentration (IC.sub.50) of each oligonucleotide is also presented. TMPRSS6 mRNA levels were significantly reduced in a dose-dependent manner in antisense oligonucleotide treated cells.
TABLE-US-00006 TABLE 5 Dose response assay with cEt containing oligonucleotides 0.19 0.56 1.67 5.00 IC.sub.50 ISIS No .mu.M .mu.M .mu.M .mu.M .mu.M 630497 28 49 69 86 0.6 647393 28 42 69 84 0.7 647394 43 59 67 83 0.3 647395 11 41 67 83 0.9 647396 25 47 73 79 0.7 647397 27 42 70 83 0.7 647398 27 49 61 84 0.7 647404 23 47 63 79 0.8 647414 38 52 72 87 0.4 647419 45 60 74 84 0.3 647420 28 52 69 82 0.6 647421 23 47 68 85 0.7 647423 23 50 74 81 0.7 647424 20 48 72 83 0.7 647426 26 37 67 76 0.9 647428 25 33 61 83 0.9 647429 20 32 59 83 1 647442 32 51 66 78 0.6 647446 32 48 73 81 0.6 647447 29 52 70 81 0.6 647448 30 56 72 79 0.5 647449 31 45 71 83 0.6 647450 32 54 70 82 0.5 647451 40 62 74 83 0.3 647453 28 52 68 84 0.6 647454 32 45 62 84 0.7 647457 28 46 69 80 0.7 647475 9 52 63 77 1 647476 43 59 70 79 0.3 647477 48 62 77 83 0.2 647478 16 41 68 82 0.9 647482 14 37 73 79 0.9 647506 37 60 75 83 0.4 647508 21 39 52 79 1.1 647514 32 42 63 81 0.7 647531 25 53 73 80 0.6 647532 26 49 61 82 0.7
[0506] For the experiment in Table 6, below, cells were plated at a density of 20,000 cells per well and transfected using electroporation with 0.22 .mu.M, 0.67 .mu.M, 2.00 .mu.M and 6.0 .mu.M concentrations of antisense oligonucleotide. After the treatment period of approximately 16 hours, RNA was isolated from the cells and TMPRSS6 mRNA levels were measured by quantitative real-time PCR. Human primer probe set RTS3840 was used to measure mRNA levels. TMPRSS6 mRNA levels were adjusted according to total RNA content, as measured by RIBOGREEN.RTM.. Results are presented as percent inhibition of TMPRSS6, relative to untreated control cells.
[0507] The half maximal inhibitory concentration (IC.sub.50) of each oligonucleotide is also presented. TMPRSS6 mRNA levels were significantly reduced in a dose-dependent manner in antisense oligonucleotide treated cells.
TABLE-US-00007 TABLE 6 Dose response assay with cEt containing oligonucleotides 0.22 0.67 2.00 6.00 IC.sub.50 ISIS No .mu.M .mu.M .mu.M .mu.M .mu.M 630497 34 54 81 89 0.5 630689 43 61 77 87 0.3 630692 54 64 85 95 0.2 630693 42 66 75 86 0.3 630696 20 37 66 82 1.1 630717 48 73 84 83 0.1 630718 49 81 88 89 0.1 630719 42 69 83 95 0.3 630722 40 56 70 90 0.4 630726 24 45 64 82 0.9 630727 36 57 73 82 0.5 630794 25 46 71 84 0.8
Example 3: Tolerability of 5-10-5 MOE Gapmers Targeting Human TMPRSS6 in CD1 Mice
[0508] CD1.RTM. mice (Charles River, Mass.) are a multipurpose mice model, frequently utilized for safety and efficacy testing. The mice were treated with about 26 ISIS 5-10-5 MOE gapmer antisense oligonucleotides selected from the tables above and evaluated for changes in the levels of various plasma chemistry markers.
Treatment
[0509] Groups of six week old male CD1 mice were injected subcutaneously twice a week for six weeks with 50 mg/kg of ISIS oligonucleotides (100 mg/kg/week dose). One group of male CD1 mice was injected subcutaneously twice a week for 6 weeks with PBS. Mice were euthanized 48 hours after the last dose, and organs and plasma were harvested for further analysis.
Plasma Chemistry Markers
[0510] To evaluate the effect of ISIS oligonucleotides on liver and kidney function, plasma levels of transaminases (ALT and AST), total bilirubin (Tbil), albumin (Alb), creatinine (Creat), and BUN were measured using an automated clinical chemistry analyzer (Hitachi Olympus AU400e, Melville, N.Y.). The results are presented in Table 7. ISIS oligonucleotides that caused changes in the levels of any of the liver or kidney function markers outside the expected range for antisense oligonucleotides were excluded in further studies.
TABLE-US-00008 TABLE 7 Plasma chemistry markers in CD1 mice at week six ALT AST BUN Creat Tbil Alb ISIS No. (U/L) (U/L) (mg/dL) (mg/dL) (mg/dL) (g/dL) PBS 24 51 27 0.17 0.17 2.9 585626 167 155 30 0.18 0.15 2.9 585649 263 157 28 0.17 0.15 3.0 585653 147 89 28 0.18 0.39 3.4 585654 778 300 26 0.15 0.17 3.0 585655 1709 1353 29 0.16 0.35 3.0 585683 45 63 31 0.18 0.20 3.0 585698 53 73 34 0.21 0.19 3.0 585752 90 99 29 0.16 0.17 2.9 585757 246 180 30 0.16 0.15 2.8 585758 212 305 28 0.18 0.28 2.9 585761 659 439 28 0.16 0.43 2.7 585762 597 551 27 0.17 0.64 3.0 585768 483 387 26 0.18 0.19 2.7 585774 109 126 31 0.16 0.14 2.6 585775 60 70 28 0.17 0.15 2.9 585776 654 388 27 0.17 0.13 2.9 585777 159 200 24 0.16 0.17 2.7 591466 46 53 27 0.15 0.12 3.0 591491 761 729 28 0.18 0.25 3.2 591514 230 215 33 0.15 0.14 2.5 591536 540 416 26 0.16 0.13 3.0 591537 552 346 27 0.17 0.16 3.0 591549 708 488 30 0.14 0.14 2.7 591550 294 225 31 0.17 0.12 2.9 591552 1098 680 24 0.17 0.17 3.0 591579 135 85 25 0.16 0.12 2.8
Body and Organ Weights
[0511] Body weights of all the groups of mice were measured at the start of the experiment, and every week until the end of the study. Liver, spleen and kidney weights were also measured at the end of the study, and the change in body weight and organ weights relative to the PBS control group at baseline are presented in Table 8. ISIS oligonucleotides that caused any changes in organ weights outside the expected range for antisense oligonucleotides were excluded from further studies.
TABLE-US-00009 TABLE 8 Body weight and relative organ weights of CD1 mice (in grams) at week six BW Relative Relative Relative change liver kidney spleen ISIS No. (g) weight (g) weight (g) weight (g) PBS 1.4 1.0 1.0 1.0 585626 1.4 1.2 0.9 1.1 585649 1.3 1.2 1.0 1.1 585653 1.4 1.1 1.0 0.9 585654 1.2 1.2 1.0 1.1 585655 1.3 1.4 1.0 1.3 585683 1.4 1.0 0.9 1.1 585698 1.5 1.2 1.0 1.4 585752 1.3 1.1 1.0 1.3 585757 1.4 1.5 1.0 1.1 585758 1.4 1.4 0.9 1.0 585761 1.1 1.4 1.0 1.3 585762 1.2 2.1 1.0 0.8 585768 1.5 1.1 1.1 1.3 585774 1.5 1.1 1.0 1.1 585775 1.5 0.9 1.0 1.2 585776 1.4 1.3 1.1 1.5 585777 1.4 1.2 1.1 1.5 591466 1.5 1.0 1.0 1.0 591491 1.3 1.2 1.0 1.1 591514 1.4 1.1 0.9 1.5 591536 1.4 1.3 1.0 1.1 591537 1.3 1.3 0.9 1.3 591549 1.4 1.2 1.0 1.5 591550 1.4 1.1 0.9 1.5 591552 1.4 1.5 1.1 1.5 591579 1.5 1.0 0.9 1.1
[0512] From these tolerability studies, it was observed that most of the 5-10-5 MOE gapmer antisense oligonucleotides were well-tolerated after six weeks of dosing.
Example 4: Tolerability of cEt Containing Oligonucleotides Targeting Human TMPRSS6 in CD1 Mice
[0513] CD1.RTM. mice (Charles River, Mass.) are a multipurpose mice model, frequently utilized for safety and efficacy testing. The mice were treated with about 51 cEt containing antisense oligonucleotides selected from the tables described above, and evaluated for changes in the levels of various plasma chemistry markers.
Treatment
[0514] Groups of five-to six-week-old male CD1 mice (n=4 per treatment group) were injected subcutaneously twice a week for six weeks with 25 mg/kg of ISIS oligonucleotides (50 mg/kg/week dose). One group of male CD 1 mice was injected subcutaneously twice a week for 6 weeks with PBS. Mice were euthanized 48 hours after the last dose, and organs and plasma were harvested for further analysis. Liver, kidney and spleen were collected for histology, and plasma was collected to measure levels of certain plasma chemistry markers.
[0515] The oligonucleotides were split into two test groups with the same conditions and the results are presented to in the tables below.
Plasma Chemistry Markers
[0516] To evaluate the effect of ISIS oligonucleotides on liver and kidney function, plasma levels of transaminases, bilinibin, albumin, creatinine, and BUN were measured using an automated clinical chemistry analyzer (Hitachi Olympus AU400e, Melville, N.Y.). The results are presented in Tables 9-10. ISIS oligonucleotides causing changes in the levels of any of the liver or kidney function markers outside the expected range for antisense oligonucleotides were excluded from further studies.
TABLE-US-00010 TABLE 9 Plasma chemistry markers in CD1 mice at week six ALT AST BUN Creat Tbil Alb ISIS No. (U/L) (U/L) (mg/dL) (mg/dL) (mg/dL) (g/dL) PBS 55 53 24 0.1 0.2 2.7 615840 752 636 26 0.15 0.23 2.5 615884 1039 664 25 0.17 0.17 2.8 615898 754 420 25 0.17 0.14 2.5 615901 118 120 22 0.11 0.18 2.5 615903 33 46 22 0.12 0.18 2.5 615909 2042 2464 49 0.16 1.19 2.7 615910 978 1058 22 0.15 1.24 2.4 615911 474 366 23 0.14 0.34 2.4 630696 1117 853 26 0.15 0.21 2.3 630716 41 67 25 0.13 0.14 2.4 630717 1005 483 23 0.13 0.19 2.3 630718 57 86 25 0.13 0.13 2.4 630722 207 168 21 0.13 0.16 2.2 630725 1729 897 20 0.12 0.15 2.2 630726 1330 774 22 0.10 0.10 2.1 630727 614 653 23 0.10 0.13 1.6 630794 39 78 24 0.12 0.16 2.6
TABLE-US-00011 TABLE 10 Plasma chemistry markers in CD1 mice at week six ALT AST BUN Creat Tbil Alb ISIS No. (U/L) (U/L) (mg/dL) (mg/dL) (mg/dL) (g/dL) PBS 31.3 54.8 32.3 0.14 0.19 3.0 630497 429.0 297.5 31.0 0.18 0.11 2.8 630689 2088.3 1306.0 34.7 0.10 0.22 2.2 630692 1634.8 1402.5 30.9 0.16 0.25 3.4 630693 1247.5 1193.8 33.6 0.19 0.68 2.8 630719 2553.0 2594.7 28.6 0.12 2.55 3.8 647414 718.5 444.0 32.7 0.13 0.12 3.0 647419 39.3 66.5 27.0 0.13 0.15 2.9 647420 90.3 100.8 30.8 0.13 0.19 3.1 647421 613.3 607.3 15.5 0.09 1.61 2.6 647423 1290.3 807.5 29.8 0.28 0.30 3.7 647424 1451.0 1198.3 25.2 0.16 0.37 3.7 647426 548.5 393.0 23.7 0.12 0.16 2.7 647428 2658.8 2232.8 24.8 0.21 0.52 3.0 647429 1306.3 725.3 23.2 0.12 0.21 2.8 647442 564.8 371.5 29.7 0.08 0.13 3.0 647446 69.0 91.3 27.6 0.10 0.14 2.9 647447 61.5 76.3 27.2 0.11 0.13 2.8 647448 100.8 110.5 24.4 0.10 0.14 2.9 647449 61.3 88.0 27.7 0.10 0.13 3.1 647450 1850.8 1512.0 18.3 0.09 0.47 2.9 647451 1376.3 588.3 26.0 0.15 0.29 3.7 647453 1774.3 1674.5 28.8 0.16 1.24 3.7 647454 324.3 409.3 27.0 0.11 0.15 2.7 647457 1609.0 1194.8 25.6 0.12 0.21 2.6 647475 40.0 80.5 25.1 0.10 0.12 2.6 647476 62.0 81.0 26.1 0.11 0.14 2.8 647477 74.8 94.0 26.5 0.11 0.15 2.9 647478 62.0 88.0 28.2 0.11 0.13 3.1 647482 959.8 975.8 25.8 0.11 0.19 2.9 647506 36.3 65.3 25.8 0.10 0.14 2.9 647508 49.8 93.3 26.3 0.11 0.14 3.1 647514 276.0 221.8 28.3 0.11 0.17 2.9 647531 248.5 175.0 28.7 0.11 0.16 3.2 647532 156.8 180.0 21.3 0.09 0.10 3.0
Body and Organ Weights
[0517] Body weights of all the groups of mice were measured at the start of the experiment, and every week until the end of the study. Liver, spleen and kidney weights were also measured at the end of the study, and the change in body weight and organ weights relative to the PBS control group at baseline are presented in Tables 11-12. ISIS oligonucleotides that caused any changes in organ weights outside the expected range for antisense oligonucleotides were excluded from further studies.
TABLE-US-00012 TABLE 11 Body weight and relative organ weights of CD1 mice (in grams) at week six BW Relative Relative Relative change liver kidney spleen ISIS No. (g) weight (g) weight (g) weight (g) PBS 1.5 1 1 1 615840 1.2 1.1 1.0 0.8 615884 1.4 1.5 1.1 1.2 615898 1.5 1.3 1.1 1.4 615901 1.5 1.3 1.1 2.0 615903 1.4 1.1 1.1 1.2 615909 0.8 1.6 1.2 0.7 615910 1.2 1.9 1.0 2.3 615911 1.5 1.4 1.1 1.6 630696 1.1 1.2 0.9 1.2 630716 1.4 1.2 1.2 1.2 630717 1.2 1.4 1.0 1.7 630718 1.4 1.2 1.1 1.4 630722 1.6 1.2 1.1 1.6 630725 1.3 1.2 1.1 1.8 630726 1.4 1.1 1.2 1.9 630727 1.3 1.2 1.2 3.5 630794 1.4 1.0 1.1 1.1
TABLE-US-00013 TABLE 12 Body weight and relative organ weights of CD1 mice (in grams) at week six BW Relative Relative Relative change liver kidney spleen ISIS No. (g) weight (g) weight (g) weight (g) PBS 1.5 1 1 1 630497 1.3 1.2 1.0 1.1 630689 1.6 1.3 1.0 1.4 630692 1.5 1.9 0.9 1.2 630693 1.2 1.3 0.8 0.9 630719 0.8 1.4 1.1 0.4 647414 1.4 1.2 1.1 1.0 647419 1.5 1.0 1.1 1.2 647420 1.4 1.1 1.0 1.4 647421 1.2 1.1 1.1 1.3 647423 1.4 1.7 1.1 1.3 647424 1.1 1.8 1.2 0.6 647426 1.4 1.5 1.1 1.8 647428 1.3 1.4 1.1 1.9 647429 1.4 1.2 1.0 1.6 647442 1.3 1.1 1.1 1.1 647446 1.4 1.2 1.2 1.4 647447 1.5 1.3 1.2 1.4 647448 1.5 1.1 1.1 1.5 647449 1.5 1.1 1.1 1.6 647450 1.4 1.3 1.1 1.9 647451 1.4 1.6 1.0 1.8 647453 1.2 1.8 1.4 1.5 647454 1.5 1.6 1.0 2.2 647457 1.4 1.3 1.0 1.8 647475 1.4 1.2 1.1 1.5 647476 1.5 1.1 1.2 1.8 647477 1.5 1.2 1.0 1.5 647478 1.6 1.1 1.0 1.2 647482 1.4 1.7 1.2 1.5 647506 1.5 1.1 1.0 1.2 647508 1.6 1.0 1.0 1.2 647514 1.5 1.0 1.0 1.5 647531 1.4 1.0 1.0 1.4 647532 1.5 1.3 1.1 1.4
Example 5: Tolerability of Oligonucleotides Targeting Human TMPRSS6 in Sprague-Dawley Rats
[0518] Sprague-Dawley rats are a multipurpose model used for safety and efficacy evaluations. The rats were treated with about 48 antisense oligonucleotides, found potent in vitro and tolerable in mice from the studies described in the Examples above, and evaluated for changes in the levels of various plasma chemistry markers.
Treatment
[0519] Male Sprague-Dawley rats (roughly eight weeks old) were maintained on a 12-hour light/dark cycle and fed ad libitum with Purina normal rat chow, diet 5001. Groups of four Sprague-Dawley rats each were injected subcutaneously once a week for 6 weeks with 100 mg/kg of MOE gapmer, or 50 mg/kg of cEt containing antisense oligonucleotides. One to two days after the final dose, urine protein/creatinine (P/C) ratio was assayed and blood was drawn 3 days after the last dose for hematologic assessments described below. Three days after the last dose, rats were euthanized and organs and plasma were harvested for further analysis.
Plasma Chemistry Markers
[0520] To evaluate the effect of ISIS oligonucleotides on liver and kidney function, plasma levels of transaminases (alanine transaminase (ALT) and aspartate transaminase (AST), total bilirubin (Tbil), albumin (Alb), creatinine (Creat), and BUN were measured using an automated clinical chemistry analyzer (Hitachi Olympus AU400e, Melville, N.Y.). The results are presented in Table 13. ISIS oligonucleotides that caused changes in the levels of any of the liver or kidney function markers outside the expected range for antisense oligonucleotides were excluded in further studies.
TABLE-US-00014 TABLE 13 Plasma chemistry markers in Sprague-Dawley rats ALT AST BUN Creat Tbil Alb ISIS No. (IU/L) (IU/L) (mg/dL) (mg/dL) (mg/dL) (g/dL) PBS 60 92 18 0.3 0.1 3.7 585626 66 139 25 0.4 0.1 3.2 585653 92 154 26 0.4 0.1 3.9 585683 73 109 19 0.4 0.1 3.3 585698 66 104 22 0.4 0.1 3.4 585752 64 145 21 0.4 0.1 3.0 585758 113 669 21 0.3 0.2 2.8 585774 125 220 25 0.4 0.2 3.2 585775 66 117 24 0.4 0.1 3.2 585777 302 321 25 0.4 0.2 3.4 591466 368 444 22 0.4 0.2 3.1 591514 91 218 22 0.3 0.2 3.3 591579 484 655 20 0.4 0.2 3.8 614954 146 132 26 0.1 0.2 2.8 615895 291 383 26 0.4 0.2 3.4 615897 1946 1467 26 0.5 0.2 4.0 615899 70 113 25 0.4 0.1 3.4 615900 93 131 26 0.4 0.1 3.1 615903 59 70 22 0.4 0.1 3.5 630716 57 86 26 0.5 0.1 3.1 630718 61 72 23 0.4 0.1 3.4 630722 117 153 24 0.4 0.1 3.2 630794 90 113 29 0.5 0.1 3.4 630800 92 133 25 0.4 0.1 3.6 630948 48 77 21 0.4 0.1 3.3 630950 79 83 25 0.4 0.1 3.3 630952 208 243 31 0.4 0.2 2.9 630953 87 135 22 0.4 0.1 3.0 630957 110 115 26 0.4 0.1 3.6 637749 63 102 25 0.1 0.2 3.2 647384 135 158 24 0.4 0.1 3.7 647389 243 272 25 0.2 0.2 3.6 647391 205 520 27 0.0 1.1 2.1 647393 142 172 27 0.2 0.1 3.4 647394 391 340 29 0.1 0.2 2.8 647395 68 95 24 0.1 0.1 3.2 647419 53 66 23 0.4 0.1 3.5 647420 56 80 23 0.1 0.1 3.3 647446 66 110 23 0.2 0.1 3.4 647447 54 67 22 0.1 0.1 3.1 647448 55 73 26 0.4 0.1 3.3 647449 46 81 24 0.4 0.1 3.2 647475 45 78 26 0.4 0.1 3.5 647476 52 85 20 0.4 0.1 3.2 647477 58 89 24 0.5 0.1 3.5 647478 50 82.8 22.8 0.4 0.1 3.2 647506 45 95.3 22.9 0.4 0.1 3.2 647508 73 183.3 33.3 0.3 0.1 2.5 647532 108 179.5 47.8 0.5 0.1 1.8
TABLE-US-00015 TABLE 14 P/C ratio in urine of Sprague-Dawley rats PBS 1.0 585626 6.7 585653 9.4 585683 7.0 585698 6.2 585752 13.4 585758 11.5 585774 7.5 585775 6.7 585777 7.6 591466 8.0 591514 8.0 591579 7.3 614954 5.2 615895 2.9 615897 4.7 615899 4.2 615900 4.5 615903 5.7 630716 3.9 630718 4.5 630722 4.3 630794 2.3 630800 5.1 630948 2.4 630950 6.3 630952 6.6 630953 4.4 630957 3.8 637749 3.0 647384 2.2 647389 2.4 647391 3.4 647393 3.7 647394 9.9 647395 5.2 647419 5.0 647420 4.9 647446 3.8 647447 3.9 647448 5.6 647449 5.0 647475 4.1 647476 4.6 647477 5.8 647478 4.6 647506 4.7 647508 9.2 647532 49.4
Hematology Assays
[0521] Blood samples of approximately 1.3 mL of blood were collected from each of the available study animals in tubes containing K.sub.2-EDTA and sent to IDEXX Laboratories, Inc. (Fremont, Calif.) for measurement and analysis of red blood cell (RBC) count, white blood cells (WBC) count, individual white blood cell counts--such as that of monocytes, neutrophils, lymphocytes--as well as for platelet count, total hemoglobin content and hematocrit (HCT). The results are presented in Table 15. ISIS oligonucleotides that caused changes in the levels of any of the hematology markers outside the expected range for antisense oligonucleotides were excluded in further studies.
TABLE-US-00016 TABLE 15 Hematology markers in Sprague-Dawley rats WBC RBC HCT Lymphocytes Monocytes Platelets ISIS No. (.times.10.sup.3/.mu.L) (.times.10.sup.6/.mu.L) (%) (/mm.sup.3) (/mm.sup.3) (.times.10.sup.3/.mu.L) PBS 4.8 8.5 52.7 3567 93 812 585626 10.1 8.3 46.9 8969 252 1237 585653 13.8 8.2 48.3 11190 359 1305 585683 17.8 7.9 45.7 15773 557 826 585698 16.9 7.9 46.0 15380 344 761 585752 15.3 8.0 46.0 11396 585 1158 585758 18.4 7.9 44.0 6369 61 1548 585774 14.7 8.5 48.6 12818 552 873 585775 7.3 8.4 48.4 6218 219 1161 585777 11.2 8.1 47.1 9548 175 982 591466 14.3 8.1 45.6 12519 226 812 591514 14.9 8.5 48.2 10993 169 1157 591579 12.5 9.1 51.1 8540 222 1080 614954 13.6 5.2 29.9 12186 441 511 615895 15.2 8.0 45.9 11868 603 926 615897 14.5 7.5 43.3 10920 786 902 615899 19.8 7.8 43.7 17319 525 566 615900 14.0 7.1 41.0 12167 267 770 615903 9.4 8.5 51.3 7113 268 687 630716 21.1 7.8 45.3 18994 449 601 630718 8.9 8.9 52.5 7071 269 657 630722 17.0 9.1 51.6 13397 721 693 630794 8.8 8.7 50.5 7098 137 529 630800 16.6 8.0 45.3 13210 478 695 630948 7.2 8.5 50.2 5359 158 670 630950 11.0 8.8 52.4 8833 307 544 630952 24.2 7.7 42.8 17991 798 958 630953 25.0 6.9 42.4 20205 713 662 630957 11.7 8.7 50.5 8913 340 684 637749 12.8 7.5 44.7 10837 765 661 647384 14.8 9.0 54.5 11682 354 642 647389 12.8 8.2 51.0 10621 534 1075 647391 16.8 2.3 20.3 13574 807 240 647393 14.5 6.9 40.8 12467 423 1112 647394 24.9 6.5 39.6 21847 1070 990 647395 10.4 7.4 45.2 8685 515 1092 647419 13.8 8.3 48.5 11866 257 939 647420 11.1 8.0 47.3 9350 521 1079 647446 5.9 7.5 44.8 4805 258 1076 647447 10.2 7.8 47.3 8542 260 1019 647448 10.7 7.9 45.3 9050 260 933 647449 21.1 7.7 45.5 18809 479 630 647475 17.4 8.3 49.0 14951 562 776 647476 14.2 8.3 47.7 12336 339 979 647477 16.8 8.3 46.3 14089 726 697 647478 23.7 7.4 42.9 22039 440 762 647506 12.9 7.9 45.4 11679 268 711 647508 12.2 6.8 38.8 9800 431 647 647532 33.1 5.3 31.0 27732 963 844
Body and Organ Weights
[0522] Body weights of all the groups of rats were measured at the start of the experiment, and every week until the end of the study. Liver, spleen and kidney weights were also measured at the end of the study, and the change in body weight and organ weights relative to the PBS control group at baseline are presented in Table 16. ISIS oligonucleotides that caused any changes in organ weights outside the expected range for antisense oligonucleotides were excluded from further studies.
TABLE-US-00017 TABLE 16 Body weight and relative organ weights of Sprague-Dawley rats (in grams) at week six ISIS No. Liver (g) Kidney (g) Spleen (g) Body weight (g) PBS 1.0 1.0 1.0 1.8 585626 1.1 0.9 2.3 1.4 585653 1.1 1.0 2.1 1.5 585683 1.1 0.9 3.3 1.4 585698 1.1 0.9 2.8 1.4 585752 1.1 0.9 2.5 1.3 585758 1.5 0.9 2.3 1.2 585774 1.1 0.9 2.2 1.4 585775 1.0 0.9 1.7 1.3 585777 1.0 0.9 2.3 1.4 591466 1.0 0.9 2.7 1.3 591514 1.1 1.0 2.4 1.1 591579 1.0 0.8 1.9 1.3 614954 1.4 1.3 4.1 1.4 615895 1.0 1.1 1.7 1.5 615897 1.3 1.1 2.1 1.7 615899 1.1 1.1 2.0 1.6 615900 1.2 1.2 2.1 1.8 615903 1.2 1.0 1.5 1.9 630716 1.1 1.1 2.8 1.6 630718 1.1 1.0 2.1 1.8 630722 1.2 1.2 1.6 1.5 630794 0.9 1.0 1.6 1.8 630800 1.3 1.3 2.4 1.6 630948 1.0 1.1 1.7 1.9 630950 1.2 1.0 2.3 1.8 630952 1.4 1.3 2.6 1.2 630953 1.4 1.2 4.2 1.6 630957 1.2 1.0 1.7 1.6 637749 1.4 1.3 4.4 1.4 647384 1.0 1.0 1.1 1.7 647389 1.0 1.1 1.8 1.7 647391 1.8 1.5 13.1 1.4 647393 1.3 1.1 1.8 1.6 647394 1.2 1.2 2.8 1.6 647395 1.3 1.3 1.8 1.7 647419 1.3 1.1 1.6 1.8 647420 1.2 1.1 2.1 1.6 647446 1.3 1.2 2.3 1.8 647447 1.1 1.1 1.9 1.7 647448 1.2 1.2 1.6 1.7 647449 1.2 1.2 1.7 1.7 647475 1.2 1.1 1.5 1.7 647476 1.1 1.1 1.5 1.5 647477 1.2 1.1 1.7 1.6 647478 1.2 1.3 1.8 1.7 647506 1.2 1.3 2.0 1.6 647508 1.7 2.1 2.9 1.3 647532 2.0 1.7 3.7 1.3
Example 6: Effect of Antisense Inhibition of TMPRSS6 in Transgenic Mouse Model
[0523] About 32 antisense oligonucleotides found tolerable in the rat studies above were further evaluated for their ability to reduce human TMPRSS6 mRNA transcript in mice with the human TMPRSS6 transgene ("huTMPRSS6" or "Tg" mice).
Treatment
[0524] Eight to sixteen week old male and female huTMPRSS6 transgenic mice were injected subcutaneously with five doses of 6 mg/kg per dose of ISIS antisense oligonucleotides targeting TMPRSS6, administered over a period of two weeks (30 mg/kg total), or with PBS as a control. Each treatment group consisted of 4 animals. Forty-eight hours after the administration of the last dose, blood was drawn from each mouse and the mice were sacrificed and tissues were collected.
RNA Analysis
[0525] At the end of the study, RNA was extracted from liver for real-time PCR analysis of liver TMPRSS6 mRNA expression. Results are presented in Table 17 as percent inhibition with respect to PBS treated animals. Human primer probe set RTS4586 (forward sequence TGATAACAGCTGCCCACTG, designated herein as SEQ ID NO: 86; reverse sequence TCACCTTGAAGGACACCTCT, designated herein as SEQ ID NO: 87; probe sequence AGTITCTGCCACACCTITGCCCA, designated herein as SEQ ID NO: 88) was used to measure mRNA levels. The mRNA levels were normalized with levels of cyclophilin A, a housekeeping gene, which were determined using primer probe set mCYCLO_24 (forward primer TCGCCGCTTGCTGCA, designated herein as SEQ ID NO: 89; reverse primer ATCGGCCGTGATGTCGA, designated herein as SEQ ID NO: 90; probe CCATGGTCAACCCCACCGTGTTC, designated herein as SEQ ID NO: 91).
TABLE-US-00018 TABLE 17 % inhibition of TMPRSS6 mRNA in transgenic mice liver normalized to PBS expression % ISIS No inhibition 585626 57 585653 74 585683 81 585698 59 585698 59 585774 69 585775 81 591514 73 615899 88 615900 88 615903 97 630716 82 630718 99 630722 92 630794 71 630800 81 630948 65 630950 81 630957 70 647384 66 647393 95 647395 100 647419 99 647420 96 647446 84 647447 89 647448 96 647449 88 647475 84 647476 84 647477 96 647478 91 647506 91
Example 7: Antisense Compounds Conjugated to GalNAc.sub.3 Targeting TMPRSS6
[0526] The sequences of selected antisense oligonucleotides targeting TMPRSS6 found potent and tolerable in the examples above were chosen as parent sequences to design new GalNAc.sub.3 conjugated antisense compounds targeting human TMPRSS6.
[0527] As summarized in Table 18, below, each of the newly designed antisense compounds described in this example had a 5'-Trishexylamino-(THA)-C6 GalNAc.sub.3 endcap. ISIS 702843 was a 5-10-5 MOE gapmer having a mixed (phosphorothioate and phosphodiester) backbone ("MBB") with a 5'-Trishexylamino-(THA)-C6 GalNAc.sub.3 endcap. ISIS 705051, 705052 and 705053 were 5-10-5 MOE gapmers having a phosphorothioate backbone with a 5'-Trishexylamino-(THA)-C6 GalNAc.sub.3 endcap. ISIS 706940 was a 3-10-3 cEt gapmer with all phosphorothioate internucleoside linkages and a 5'-Trishexylamino-(THA)-C6 GalNAc.sub.3 endcap; ISIS 706941, 706942 and 706943 are deoxy, MOE, and (S)-cEt containing gapmers having a phosphorothioate backbone with a 5'-Trishexylamino-(THA)-C6 GalNAc.sub.3 endcap.
TABLE-US-00019 TABLE 18 Eight unconjugated antisense compounds targeting TMPRSS6 mRNA and corresponding GalNAc.sub.3 conjugate antisense compounds Parent GalNAc Sequence Conjugated SEQ ISIS# ISIS# Backbone Length Sequence Chemistry ID NO 585774 702843 MBB 20 CTTTATTCCAAAGGGCAGCT 5'-THA GalNAc.sub.3 36 5-10-5 MOE 585774 705051 PS 20 CTTTATTCCAAAGGGCAGCT 5'-THA GalNAc.sub.3 36 5-10-5 MOE 585683 705052 PS 20 GCACGGCAAATCATACTTCT 5'-THA GalNAc.sub.3 23 5-10-5 MOE 585775 705053 PS 20 AGCTTTATTCCAAAGGGCAG 5'-THA GalNAc.sub.3 37 5-10-5 MOE 630718 706940 PS 16 AGCTTTATTCCAAAGG 5'-THA GalNAc.sub.3 63 kkk-d10-kkk 647477 706941 PS 16 AGCTTTATTCCAAAGG 5'-THA GalNAc.sub.3 63 kk-d8-eeeekk 647449 706942 PS 16 CAGCTTTATTCCAAAG 5'-THA GalNAc.sub.3 77 kk-d9-eeekk 647420 706943 PS 16 CAGCTTTATTCCAAAG 5'-THA GalNAc.sub.3 77 kek-d9-eekk
[0528] All of the oligonucleotides sequences described in Table 18 were complementary to both human and Rhesus monkey sequences. At the time the studies described herein were undertaken, the cynomolgus monkey genomic sequence for TMPRSS6 was not available in the National Center for Biotechnology Information (NCBI) database; therefore, cross-reactivity of antisense oligonucleotides targeting human TMPRSS6 with the cynomolgus monkey gene sequence could not be confirmed. Instead, the sequences of antisense oligonucleotides were compared to a rhesus monkey sequence for homology. It is expected that ISIS oligonucleotides with homology to the rhesus monkey sequence are fully cross-reactive with the cynomolgus monkey sequence as well.
[0529] The antisense oligonucleotides selected for GalNAc conjugation are fully complementary to the rhesus genomic sequence (the complement of GENBANK Accession No. NW_001095180.1, truncated from nucleotides 380000 to 422000, designated herein as SEQ ID NO: 95). The start and stop sites of each oligonucleotide to the rhesus sequence is presented in Table 19 while the start and stop sites of each oligonucleotide to the human sequence is presented in Table 20. "Start site" indicates the 5'-most nucleotide to which the gapmer is targeted in the rhesus monkey or human sequences.
TABLE-US-00020 TABLE 19 ASOs complementary to the rhesus TMPRSS6 genomic sequence (SEQ ID NO: 95) rhesus rhesus SEQ ISIS Start Stop ID No Site Site Chemistry Sequence NO 585774 40518 40537 5-10-5 MOE CTTTATTCCAAAGGGCAGCT 36 702843 40518 40537 5'-THA GalNAc.sub.3 5-10-5 MOE CTTTATTCCAAAGGGCAGCT 36 705051 40518 40537 5'-THA GalNAc.sub.3 5-10-5 MOE CTTTATTCCAAAGGGCAGCT 36 705052 22499 22518 5'-THA GalNAc.sub.3 5-10-5 MOE GCACGGCAAATCATACTTCT 23 705053 40520 40539 5'-THA GalNAc.sub.3 5-10-5 MOE AGCTTTATTCCAAAGGGCAG 37 630718 40524 40539 kkk-10-kkk AGCTTTATTCCAAAGG 63 706940 40524 40539 5'-THA GalNAc.sub.3 kkk-10-kkk AGCTTTATTCCAAAGG 63 706941 40524 40539 5'-THA GalNAc.sub.3 kk-8-eeeekk AGCTTTATTCCAAAGG 63 706942 40525 40540 5'-THA GalNAc.sub.3 kk-9-eeekk CAGCTTTATTCCAAAG 77 706943 40525 40540 5'-THA GalNAc.sub.3 kk-9-eeekk CAGCTTTATTCCAAAG 77
TABLE-US-00021 TABLE 20 Sites on TMPRSS6 mRNA (SEQ ID NO: 1) and/or genomic (SEQ ID NO: 2) sequences targeted by GalNAc.sub.3- modified antisense oligonucleotides SEQ ID SEQ ID SEQ ID SEQ ID NO: 1 NO: 1 NO: 2 NO: 2 SEQ ISIS Start Stop Start Stop ID NO Site Site Site Site NO 702843 3162 3181 44924 44943 36 705051 3162 3181 44924 44943 36 705052 1286 1305 26046 26065 23 705053 3164 3183 44926 44945 37 706940 3168 3183 44930 44945 63 706941 3168 3183 44930 44945 63 706942 3169 3184 44931 44946 77 706943 3169 3184 44931 44946 77
Example 8: Tolerability of GalNAc3-Modified Antisense Oligonucleotides Targeted to Human TMPRSS6 in CD-1 Mice
[0530] CD1.RTM. mice (Charles River, Mass.) were treated with ISIS GalNAc.sub.3-modified antisense oligonucleotides described in Table 18 above, and evaluated for changes in the levels of various plasma chemistry markers.
Treatment
[0531] Groups of six-week-old male CD1 mice (n=4 per treatment group) were injected subcutaneously twice a week for six weeks with 40 mg/kg of ISIS MOE gapmer GalNAc3-modified antisense oligonucleotides (80 mg/kg/week dose) or with 20 mg/kg of ISIS (S)-cEt containing gapmer GalNAc3-modified antisense oligonucleotides described in Table 14 above (40 mg/kg/week dose). One group of male CD1 mice was injected subcutaneously twice a week for 6 weeks with PBS. Mice were euthanized 48 hours after the last dose, and organs and plasma were harvested for further analysis. Liver, kidney, spleen, heart and lung were collected for histology, and plasma was collected to measure levels of certain plasma chemistry markers.
Plasma Chemistry Markers
[0532] To evaluate the effect of ISIS GalNAc.sub.3-modified antisense oligonucleotides on liver and kidney function, plasma levels of transaminases, bilirubin, albumin, creatinine, and BUN were measured using an automated clinical chemistry analyzer (Hitachi Olympus AU400e, Melville, N.Y.). The results are presented in Table 21. ISIS oligonucleotides causing changes in the levels of any of the liver or kidney function markers outside the expected range for antisense oligonucleotides were excluded from further studies.
TABLE-US-00022 TABLE 21 Plasma chemistry markers in CD1 mice at week six ALT AST BUN Creat Tbil Alb ISIS No. (U/L) (U/L) (mg/dL) (mg/dL) (mg/dL) (g/dL) PBS 32 70 27.3 0.12 0.17 2.8 702843 59 72 28 0.17 0.16 2.9 705051 47 73 26.6 0.16 0.17 2.8 705052 81 94 26.3 0.16 0.17 2.8 705053 139 129 28.2 0.17 0.18 2.9 706940 46 66 28.1 0.18 0.14 3.0 706941 40 57 25.5 0.18 0.16 2.9 706942 195 145 27 0.16 0.14 3.0 706943 178 144 26.1 0.16 0.16 3.9
Body and Organ Weights
[0533] Body weights of all groups of mice were measured at the start of the experiment, and every week until the end of the study. Liver, kidney and spleen weights were also measured at the end of the study, and the change in body weight and organ weights relative to the PBS control group at baseline are presented in Table 22. ISIS oligonucleotides that caused any changes in organ weights outside the expected range for antisense oligonucleotides were excluded from further studies.
TABLE-US-00023 TABLE 22 Change in body weight and relative organ weights of CD1 mice (in grams) at week six BW change Relative liver Relative kidney Relative spleen ISIS No. (g) weight (g) weight (g) weight (g) PBS 1.41 1.00 1.00 1.00 702843 1.39 1.05 1.00 1.08 705051 1.38 0.98 1.00 1.05 705052 1.39 1.02 0.96 1.32 705053 1.37 1.03 0.98 1.22 706940 1.31 0.97 1.01 1.16 706941 1.39 0.90 0.98 1.12 706942 1.39 1.09 1.09 1.40 706943 1.44 1.06 1.02 1.08
Hematology
[0534] To evaluate any effect of ISIS GalNAc.sub.3-modified antisense oligonucleotides in CD1 mice on hematologic parameters, blood samples of approximately 1.3 mL of blood was collected from each of the available study animals in tubes containing K.sub.2-EDTA. Samples were analyzed for red blood cell (RBC) count, white blood cells (WBC) count, individual white blood cell counts, such as that of monocytes, neutrophils, lymphocytes, as well as for platelet count, hemoglobin content and hematocrit, using an ADVIA120 hematology analyzer (Bayer, USA). The data is presented in Table 23.
[0535] The data indicate the oligonucleotides did not cause significant changes in hematologic parameters outside the expected range for antisense oligonucleotides at this dose. Generally, ISIS GalNAc-conjugated antisense oligonucleotides were well tolerated in terms of the hematologic parameters of the mice.
TABLE-US-00024 TABLE 23 Blood cell counts in CD1 mice WBC RBC Platelets (.times.10.sup.3/ (.times.10.sup.6/ HCT Lymphocytes Monocytes (.times.10.sup.3/ ISIS No. .mu.L) .mu.L) (%) (/mm.sup.3) (/mm.sup.3) .mu.L) PBS 2.9 8.9 49.9 1916.5 38.8 659.0 702843 4.9 8.9 48.5 3630.0 90.3 700.5 705051 4.0 8.5 47.8 2961.0 80.7 781.3 705052 3.2 9.3 50.7 2553.7 146.0 750.7 705053 5.3 9.1 49.8 3856.0 179.5 913.3 706940 3.7 8.5 46.7 2591.3 154.0 935.3 706941 5.5 8.8 49.9 3940.3 177.5 911.8 706942 5.7 9.4 51.8 4126.3 155.3 955.7 706943 3.4 8.9 48.2 3067.0 0.0 1021.3
[0536] Histological assessment of the GalNAc-conjugated TMPRSS6 antisense compounds in liver, spleen, kidney, heart and lung from the CD-1 Mice was performed. Overall, despite dosing GalNAc.sub.3-conjugated antisense oligonucleotides at doses having approximately 8-times more activity in liver than unconjugated oligonucleotides, they were well tolerated and useful compounds for inhibiting TMPRSS6 and are important candidates for the treatment of an iron accumulation disease, disorder or condition.
Example 9: Dose-Response of Antisense Oligonucleotides Targeting TMPRSS6 in huTMPRSS6 Transgenic Mice
[0537] The eight ISIS GalNAc.sub.3-modified antisense oligonucleotides targeting TMPRSS6 (ISIS Nos. 702843, 705051, 705052, 705053, 706940, 706941, 706942 and 706943) as well as two parent compounds (ISIS 585774 and ISIS 630718) were tested and evaluated in a dose-response study for their ability to inhibit human TMPRSS6 mRNA expression in huTMPRSS6 transgenic mice.
Treatment
[0538] huTMPRSS6 Tg mice were maintained on a 12-hour light/dark cycle and were fed ad libitum normal mouse chow. Animals were acclimated for at least 7 days in the research facility before initiation of the experiment. Antisense oligonucleotides (ASOs) were prepared in buffered saline (PBS) and sterilized by filtering through a 0.2 micron filter. Oligonucleotides were dissolved in 0.9% PBS for injection.
[0539] Male and female huTMPRSS6 mice, roughly 3.5 to 4.5 months old, were divided into 44 groups of four mice each (two males and two females in each group). The mice received subcutaneous injections of ISIS oligonucleotide, twice per week for three weeks. One group of mice received subcutaneous injections of PBS twice per week for three weeks. Forty-eight hours after the administration of the last dose, blood was drawn from each mouse and the mice were sacrificed and tissues were collected.
RNA Analysis
[0540] At the end of the treatment period, total RNA was extracted from the livers of transgenic mice for quantitative real-time PCR analysis and measurement of human TMPRSS6 mRNA expression. TMPRSS6 mRNA levels were normalized with levels of cyclophilin A, a housekeeping gene, which were determined using mCYCLO_24 primer probe set according to standard protocols. The results below are presented in Table 24 as the average percent of TMPRSS6 mRNA levels for each treatment group, normalized to PBS-treated control and are denoted as "% PBS". Values above 100 were simply noted as "100". Negative values were simply noted as "0".
[0541] Human primer probe set RTS4586 (forward sequence TGATAACAGCTGCCCACTG, designated herein as SEQ ID NO: 86; reverse sequence TCACCTTGAAGGACACCTCT, designated herein as SEQ ID NO: 87; probe sequence AGTTCTGCCACACCTTGCCCA, designated herein as SEQ ID NO: 88) was used to measure mRNA levels.
TABLE-US-00025 TABLE 24 Response to eight ISIS GalNAc.sub.3-conjugated and two unconjugated compounds targeting TMPRSS6 in Tg mice Dose TMPRSS6 TMPRSS6 Treatment (mpk/wk) % PBS % Inhibition 585774 100 4 96 30 35 65 10 99 1 3 100 0 702843 10 0 100 3 16 84 1 55 45 0.3 100 0 705051 10 1 99 3 68 32 1 72 28 0.3 100 0 705052 10 28 72 3 23 77 1 100 0 0.3 100 0 705053 10 7 93 3 30 70 1 100 0 0.3 100 0 630718 30 0 100 10 37 63 3 100 0 1 100 0 706940 3 0 100 1 4 96 0.3 52 48 0.1 100 0 706941 3 8 92 1 71 29 0.3 100 0 0.1 100 0 706942 3 2 98 1 47 53 0.3 82 18 0.1 100 0 706943 3 2 98 1 15 85 0.3 100 0 0.1 100 0
Plasma Chemistry Markers
[0542] To evaluate the effect of ISIS oligonucleotides on liver and kidney function, serum levels of transaminases, biliribin and BUN were measured using an automated clinical chemistry analyzer (Hitachi Olympus AU400e, Melville, N.Y.) and presented in Table 25 below. ISIS oligonucleotides causing changes in the levels of any of the liver or kidney function markers outside the expected range for antisense oligonucleotides were excluded from further studies.
TABLE-US-00026 TABLE 25 Serum chemistries of eight ISIS GalNAc.sub.3-modified ASOs and two unconjugated compounds targeting TMPRSS6 in transgenic mice Dose (mg/kg/wk) ALT AST BUN PBS n/a 39.5 64.8 40.4 585774 100 40.8 68.5 42.5 30 36.5 70.8 37.2 10 38.5 59.0 38.9 3 39.8 59.5 41.6 702843 10 38.3 57.3 35.6 3 41.8 65.5 38.9 1 41.8 100.3 34.7 0.3 43.3 65.3 38.8 705051 10 47.3 79.8 35.4 3 37.0 58.5 34.9 1 33.0 57.0 35.7 0.3 42.0 67.5 34.6 705052 10 34.8 61.5 33.9 3 37.0 62.5 32.8 1 35.8 57.8 35.1 0.3 35.0 65.0 34.1 705053 10 39.0 55.8 32.4 3 35.3 62.8 38.6 1 39.8 73.5 36.6 0.3 39.5 73.3 37.9 630718 30 58.8 160.8 37.7 10 38.3 73.0 33.8 3 39.3 92.3 32.8 1 38.0 67.8 35.0 706940 3 36.3 54.8 33.7 1 39.8 65.0 35.7 0.3 38.3 66.8 34.9 0.1 36.8 52.8 31.8 706941 3 37.5 59.0 31.6 1 34.3 75.8 32.3 0.3 40.5 72.8 34.9 0.1 45.3 63.8 31.3 706942 3 34.3 90.5 35.8 1 36.8 58.3 32.8 0.3 46.8 270.0 39.8 0.1 35.5 76.5 31.0 706943 3 35.5 81.3 34.6 1 33.3 71.8 31.0 0.3 35.0 54.5 32.2 0.1 42.3 60.0 33.1
[0543] All GalNAc conjugated ASOs were well-tolerated with no major changes in organ and body weights nor serum transaminase levels.
[0544] The half maximal effective dosage (ED.sub.50) of each ASO was calculated and is presented in Table 26, below.
TABLE-US-00027 TABLE 26 Potencies of eight ISIS GalNAc.sub.3- modified ASOs and two unconjugated compounds targeting TMPRSS6 ISIS # ED.sub.50 (mpk/wk) 585774 26.0 702843 ~1.0 705051 3.7 705052 ~2.7 705053 ~2.8 630718 ~9.7 706940 ~0.3 706941 1.3 706942 0.9 706943 ~0.9
[0545] ED.sub.50 calculations showed that GalNAc-conjugated ASOs are approximately 10-fold more potent than unconjugated ASOs. ISIS 702843 was the most potent GalNAc conjugated 5-10-5 MOE gapmer compound.
Example 10: Viscosity Assessment of Antisense Oligonucleotides Targeting TMPRSS6
[0546] The viscosity of the antisense oligonucleotides was measured with the aim of screening out antisense oligonucleotides which have a viscosity more than 40 cP. Oligonucleotides having a viscosity greater than 40 cP would not be optimal for administration to a subject.
[0547] ISIS oligonucleotides (32-35 mg) were weighed into a glass vial, 120 .mu.L of water was added and the antisense oligonucleotide was dissolved into solution by heating the vial at 50.degree. C. Part of (75 .mu.L) the pre-heated sample was pipetted to a micro-viscometer (Cambridge). The temperature of the micro-viscometter was set to 25.degree. C. and the viscosity of the sample was measured. Another part (20 .mu.L) of the pre-heated sample was pipetted into 10 mL of water for UV reading at 260 nM at 85.degree. C. (Cary UV instrument). The results are presented in Table 27 and indicate that most of the GalNAc antisense oligonucleotides solutions are optimal in their viscosity under the criterion stated above. Antisense oligonucleotide 706941 was the only antisense oligonucleotide tested that had a viscosity level above 40 cP.
TABLE-US-00028 TABLE 27 Viscosity Data for GalNAc-Conjugated ASOs ISIS # Chemistry cP 702843 5'-THA GalNAc.sub.3 5-10-5 MOE (MBB) 33 705051 5'-THA GalNAc.sub.3 5-10-5 MOE (PS) 23 705052 5'-THA GalNAc.sub.3 5-10-5 MOE (PS) 16 705053 5'-THA GalNAc.sub.3 5-10-5 MOE (PS) 26 706940 5'-THA GalNAc.sub.3 kkk-10-kkk (PS) 39 706941 5'-THA GalNAc.sub.3 kk-8-eeeekk (PS) 54 706942 5'-THA GalNAc.sub.3 kk-9-eeekk (PS) 20 706943 5'-THA GalNAc.sub.3 kek-9-eekk (PS) 19
Example 11: Antisense Inhibition In Vivo by Oligonucleotides Targeting TMPRSS6 Comprising a GalNAc.sub.3 Conjugate in Cynomolgus Monkeys
[0548] At the time this study was undertaken, the cynomolgus monkey genomic sequence for TMPRSS6 was not available in the National Center for Biotechnology Information (NCBI) database; therefore, cross-reactivity of antisense oligonucleotides targeting human TMPRSS6 with the cynomolgus monkey gene sequence could not be confirmed. Instead, the sequences of antisense oligonucleotides were compared to a rhesus monkey sequence for homology as described in Example 6, above. It is expected that ISIS oligonucleotides with homology to the rhesus monkey sequence are fully cross-reactive with the cynomolgus monkey sequence as well.
[0549] The ten human TMPRSS6 antisense oligonucleotides selected for testing in cynomolgus monkey had 0 mismatches with the rhesus genomic sequence (SEQ ID NO: 95) as described in Example 6, above.
Study Design
[0550] Ten antisense oligonucleotides were evaluated for efficacy and tolerability, and for their pharmacokinetic profile in the liver and kidney in a 13-week study of antisense inhibition of TMPRSS6 mRNA in male cynomolgus monkeys. The monkeys were treated by subcutaneous administration with the eight ISIS GalNAc.sub.3-modified ASOs and two unconjugated parent antisense oligonucleotides antisense oligonucleotides targeting TMPRSS6 as shown in Table 28.
TABLE-US-00029 TABLE 28 ASOs compared in cynomolgus monkey studies Group ISIS# Dose 1 PBS Control n/a 2 585774 25 mpk 3 705051 30 mpk 4 705052 30 mpk 5 705053 30 mpk 6 702843 30 mpk 7 705051 5 mpk 8 702843 5 mpk 9 630718 23 mpk 10 706940 30 mpk 11 706941 30 mpk 12 706942 30 mpk 13 706943 30 mpk 14 706940 5 mpk
[0551] High-dose (30mpk) groups for the GalNAc-conjugated ASOs assessed toxicity. Low-dose (5 mpk) groups for GalNAc-conjugated ASOs were compared to a corresponding unconjugated parent sequence to assess activity. Groups 2, 3, 6, 7 and 8 are the same sequence, and the mixed backbone (MBB) compound ISIS No. 702843 is tested at both low and high doses, as well as compared to the full phosphorothioate compound ISIS No. 705051 (also tested at both low and high doses). Groups 9, 10, 11 and 14 are the same sequence, and ISIS No. 706940 is tested at both low and high doses.
Treatment
[0552] Prior to the study, the monkeys were kept in quarantine during which the animals were observed daily for general health. The monkeys were two to four years old and weighed two to four kg. 56 male cynomolgus monkeys were randomly assigned to 14 treatment groups with four monkeys per group. Monkeys were each injected subcutaneously every other day for the first week, and then once weekly for 11 weeks for a total of 15 doses with ISIS oligonucleotide or PBS using a stainless steel dosing needle and syringe of appropriate size. Tail bleeds were conducted at 1 week prior to the first administration, then again at days 9, 16, 30, 44, 58, 72 and 86.
[0553] During the study period, the monkeys were observed twice daily for signs of illness or distress. Any animal experiencing more than momentary or slight pain or distress due to the treatment, injury or illness was treated by the veterinary staff with approved analgesics or agents to relieve the pain after consultation with the Study Director. Any animal in poor health or in a possible moribund condition was identified for further monitoring and possible euthanasia. Scheduled euthanasia of the animals was conducted on day 86. The protocols described in the Example were approved by the Institutional Animal Care and Use Committee (IACUC).
[0554] Prior to the first dose and at various time points thereafter, blood draws were performed for clinical pathology endpoints (hematology, clinical chemistry, coagulation, Complement Bb and C3, cytokine and chemokine analyses), and urine chemistry was also measured. At baseline and at the end of the experimental period, certain pharmacology endpoints were measured, such as liver TMPRSS6 mRNA expression, serum hepcidin (Intrinsic LifeSciences, San Diego, Calif.), serum iron and serum transferrin saturation. At the end of the study, body and organ weights, histopathology of tissues and PK analysis of liver and kidney were measured. No significant changes in body weight, cytokine or albumin levels were observed.
TMPRSS6 RNA Analysis
[0555] At the end of the study, RNA was extracted from liver for real-time PCR analysis of measurement of mRNA expression of TMPRSS6 using various primer-probe sets. Representative data using the primer probe set RTS3840 is presented in the table below. Results in Table 29 are presented as percent inhibition of TMPRSS6 mRNA relative to saline control, normalized with cyclophilin (mCYCLO_24 primer probe set).
TABLE-US-00030 TABLE 29 Reduction of monkey liver TMPRSS6 mRNA after 12-weeks ASO administration % Treatment Dose (mg/kg) inhibition Group 585774 25 76 2 705051 30 90 3 705052 30 64 4 705053 30 49 5 702843 30 89 6 705051 5 77 7 702843 5 82 8 630718 23 65 9 706940 30 71 10 706941 30 72 11 706942 30 93 12 706943 30 91 13 706940 5 61 14
[0556] ISIS Nos. 705051, 702843, 706942 and 706943 were quite efficacious, demonstrating .gtoreq.89% target reduction at 30 mpk after 13-weeks of dosing.
Hepcidin Analysis
[0557] Serum hepcidin levels were measured at the time points shown in Table 30 below. Results are presented as percent saline control. "Day -7" indicates one week before the first dose was administered.
TABLE-US-00031 TABLE 30 Monkey serum hepcidin levels Dose (mg/kg) Day -7 Day 9 Day 16 Day 44 Day 86 Saline n/a 1.0 1.0 1.0 1.0 1.0 585774 25 0.9 1.3 1.4 1.1 1.4 705051 30 0.9 1.1 1.5 1.5 1.8 702843 30 0.9 1.2 1.2 1.3 1.9 706942 30 0.7 1.0 1.5 1.3 1.9 706943 30 0.8 0.9 1.5 1.2 1.6
[0558] The table shows that serum hepcidin levels increased over the course of the study.
Serum Iron and Transferrin Saturation Analysis
[0559] The averages of the four subjects from each of the 14 treatment groups are presented in Table 31, below. As is shown in Table 31, serum iron levels and transferrin saturation ("Tf sat") were reduced at day 86 in treated groups compared to control.
TABLE-US-00032 TABLE 31 Monkey serum iron and transferrin saturation levels at day 86 Group Dose # Treatment (mg/kg) iron Tf sat 1 Saline n/a 125.7 38.8 2 585774 25 55.2 15.7 3 705051 30 36.6 10.0 4 705052 30 61.9 15.8 5 705053 30 96.0 27.0 6 702843 30 42.3 13.3 7 705051 5 63.7 20.0 8 702843 5 51.7 16.5 9 630718 23 61.4 17.7 10 706940 30 71.6 20.5 11 706941 30 55.7 15.8 12 706942 30 25.9 6.9 13 706943 30 30.3 7.4 14 706940 5 82.8 23.7
Sequence CWU
1
1
9513212DNAHomo sapiens 1cttgagccag acccagtcca gctctggtgc ctgccctctg
gtgcgagctg acctgagatg 60cacttccctc ctctgtgagc tgtctcggca cccacttgca
gtcactgccg cctgatgttg 120ttactcttcc actccaaaag gatgcccgtg gccgaggccc
cccaggtggc tggcgggcag 180ggggacggag gtgatggcga ggaagcggag ccggagggga
tgttcaaggc ctgtgaggac 240tccaagagaa aagcccgggg ctacctccgc ctggtgcccc
tgtttgtgct gctggccctg 300ctcgtgctgg cttcggcggg ggtgctactc tggtatttcc
tagggtacaa ggcggaggtg 360atggtcagcc aggtgtactc aggcagtctg cgtgtactca
atcgccactt ctcccaggat 420cttacccgcc gggaatctag tgccttccgc agtgaaaccg
ccaaagccca gaagatgctc 480aaggagctca tcaccagcac ccgcctggga acttactaca
actccagctc cgtctattcc 540tttggggagg gacccctcac ctgcttcttc tggttcattc
tccaaatccc cgagcaccgc 600cggctgatgc tgagccccga ggtggtgcag gcactgctgg
tggaggagct gctgtccaca 660gtcaacagct cggctgccgt cccctacagg gccgagtacg
aagtggaccc cgagggccta 720gtgatcctgg aagccagtgt gaaagacata gctgcattga
attccacgct gggttgttac 780cgctacagct acgtgggcca gggccaggtc ctccggctga
aggggcctga ccacctggcc 840tccagctgcc tgtggcacct gcagggcccc aaggacctca
tgctcaaact ccggctggag 900tggacgctgg cagagtgccg ggaccgactg gccatgtatg
acgtggccgg gcccctggag 960aagaggctca tcacctcggt gtacggctgc agccgccagg
agcccgtggt ggaggttctg 1020gcgtcggggg ccatcatggc ggtcgtctgg aagaagggcc
tgcacagcta ctacgacccc 1080ttcgtgctct ccgtgcagcc ggtggtcttc caggcctgtg
aagtgaacct gacgctggac 1140aacaggctcg actcccaggg cgtcctcagc accccgtact
tccccagcta ctactcgccc 1200caaacccact gctcctggca cctcacggtg ccctctctgg
actacggctt ggccctctgg 1260tttgatgcct atgcactgag gaggcagaag tatgatttgc
cgtgcaccca gggccagtgg 1320acgatccaga acaggaggct gtgtggcttg cgcatcctgc
agccctacgc cgagaggatc 1380cccgtggtgg ccacggccgg gatcaccatc aacttcacct
cccagatctc cctcaccggg 1440cccggtgtgc gggtgcacta tggcttgtac aaccagtcgg
acccctgccc tggagagttc 1500ctctgttctg tgaatggact ctgtgtccct gcctgtgatg
gggtcaagga ctgccccaac 1560ggcctggatg agagaaactg cgtttgcaga gccacattcc
agtgcaaaga ggacagcaca 1620tgcatctcac tgcccaaggt ctgtgatggg cagcctgatt
gtctcaacgg cagcgacgaa 1680gagcagtgcc aggaaggggt gccatgtggg acattcacct
tccagtgtga ggaccggagc 1740tgcgtgaaga agcccaaccc gcagtgtgat gggcggcccg
actgcaggga cggctcggat 1800gaggagcact gtgactgtgg cctccagggc ccctccagcc
gcattgttgg tggagctgtg 1860tcctccgagg gtgagtggcc atggcaggcc agcctccagg
ttcggggtcg acacatctgt 1920gggggggccc tcatcgctga ccgctgggtg ataacagctg
cccactgctt ccaggaggac 1980agcatggcct ccacggtgct gtggaccgtg ttcctgggca
aggtgtggca gaactcgcgc 2040tggcctggag aggtgtcctt caaggtgagc cgcctgctcc
tgcacccgta ccacgaagag 2100gacagccatg actacgacgt ggcgctgctg cagctcgacc
acccggtggt gcgctcggcc 2160gccgtgcgcc ccgtctgcct gcccgcgcgc tcccacttct
tcgagcccgg cctgcactgc 2220tggattacgg gctggggcgc cttgcgcgag ggcggcccca
tcagcaacgc tctgcagaaa 2280gtggatgtgc agttgatccc acaggacctg tgcagcgagg
tctatcgcta ccaggtgacg 2340ccacgcatgc tgtgtgccgg ctaccgcaag ggcaagaagg
atgcctgtca gggtgactca 2400ggtggtccgc tggtgtgcaa ggcactcagt ggccgctggt
tcctggcggg gctggtcagc 2460tggggcctgg gctgtggccg gcctaactac ttcggcgtct
acacccgcat cacaggtgtg 2520atcagctgga tccagcaagt ggtgacctga ggaactgccc
ccctgcaaag cagggcccac 2580ctcctggact cagagagccc agggcaactg ccaagcaggg
ggacaagtat tctggcgggg 2640ggtgggggag agagcaggcc ctgtggtggc aggaggtggc
atcttgtctc gtccctgatg 2700tctgctccag tgatggcagg aggatggaga agtgccagca
gctgggggtc aagacgtccc 2760ctgaggaccc aggcccacac ccagcccttc tgcctcccaa
ttctctctcc tccgtcccct 2820tcctccactg ctgcctaatg caaggcagtg gctcagcagc
aagaatgctg gttctacatc 2880ccgaggagtg tctgaggtgc gccccactct gtacagaggc
tgtttgggca gccttgcctc 2940cagagagcag attccagctt cggaagcccc tggtctaact
tgggatctgg gaatggaagg 3000tgctcccatc ggaggggacc ctcagagccc tggagactgc
caggtgggcc tgctgccact 3060gtaagccaaa aggtggggaa gtcctgactc cagggtcctt
gccccacccc tgcctgccac 3120ctgggccctc acagcccaga ccctcactgg gaggtgagct
cagctgccct ttggaataaa 3180gctgcctgat caaaaaaaaa aaaaaaaaaa aa
3212247001DNAHomo sapiens 2tgggtggaat cacttgaggt
caggagttcg agaccagcct ggctaacatg gtgaaacccc 60atctcttcta aaattatgaa
aattagccgg gcatggtggt gggcgctgta atcccagcta 120cctgggaggc tgaggcagga
gaattgcttg aacccgggag gcggaggttg cagtgagccg 180aaatcacacc actgcactct
agcctgggtg acggagtgag actccatctt aaaaaaaaaa 240aaaaaaaaaa aaaagaacga
ggtaggaatt caaataattc ccagctaaac agaaaatagc 300atcaaacccc acccctgcct
cccctttctc ctctccagtc cccagagtat atgggcccag 360cctccttttc tctctctcag
gccagcagct cctttagtct cgcctgtcca ggtaagcacc 420tggactcacc cttgtgagcc
cctgcactca cctgcaccgg cctctgcaca gtccccagtc 480cttggctgtc cctacctcat
gctctcgggg accaggggct gtaaccaggc aggcatgtca 540ccaggcaacg ggcctcgggg
gagagctcag atctcccgca cctgcctgcc agcctctggg 600gtgcccatgc gggggtgggg
gaagatgggg cggggcaggc actgccttct cctacctcct 660gcctgtttac ctgtacttag
tcacagtgct gtccaggacc cagcaggagg agttccatgg 720agcctgaggc cacaggccac
aggggacaag ggccagacac cctggtcatg gctctaggcc 780attgatccag cctgggctgg
ctgggtgggg gtggggaggc cttggcctgg acaaacagag 840gctcctgagg cctgtgtgca
ggcccggcac ctatctgccg ctcccaaagg taagcggggg 900cctccaggac aggggaccgg
gatctataaa tgacctagtg acagtgtcca ccctaagagc 960tgggcctggc tccctgcagc
ctgagccacc taccctgctc cgaggccagg cctgcagggc 1020ctcatcggcc agagggtgat
cagtgagcag aaggtgaggg gcccacagag ctggggaggg 1080gagggaccac gcagggtgac
accaggtgtg tggacaggca cagcatcagt gctgggtggt 1140tggtggcctg ggattcaggt
ggcagggaca ggaggaaggg agaggccacc ctacccctgc 1200ctcgcaggac tggacatgct
gccccctcca cacccggtac cccacctggg ccttctggtg 1260taggagacag gcccggagcc
ccacattgca cctatgtact gacttaagcc caggaccctg 1320ggctcacagg ctcagagttg
gcatgtatgt gtatgtgtgt tcgtgtgtgt gtctgtgtag 1380gaagggcgtg catctatgaa
tttttgtgtc atgaatagat gtgcgtatat ccctccgcgt 1440gtctccatct gtgtacatct
gtgggtctgt gagtgtgttt atatgtgtgg aagggacccc 1500cacccagtcc cccacactct
caggactcta gggcctaatg gtttcactga aagatgcccc 1560tatggcccta gcccagagtc
cctgctctgc tctgctctgc cctggctgag ggacctcggg 1620taagtcatgt tacctctctc
tacctcagtt tccccagcca ttaaatagag tcagcaaagt 1680aggcacccca ggctgttgga
ggctgcagtg gagtttgcag cactgcccag cacagggctg 1740gcacatggta ggagttcata
cgcagtggtt gaatccggat ctgcattgct gggggagtcg 1800cggccccgcc ccaaggagct
cagcctccag caggcagacc cgagaccctc caatggccag 1860aagggcagga gggagtgagg
agcaggtgcc agggtggggt ccatggtgct cagagctggg 1920ggactgcttc aggcccctgt
ggcaattgga gcacagtccc cgcttccagg agttcaatgt 1980gaggggcaaa gagagagtgc
ccacaggtaa gctgcacatc gcgaggggca gccgcccctt 2040ctagggcact ctgggagagc
tgcgaagagg tgaggtctga actgaggtga caggggctgc 2100ataagagctg gccaggttgg
gaggtggggg cccaggcaga aggaagagtg tggggacgcc 2160tggccgtgaa caagcactga
cagggctcaa ggtccacgag ggctcttggt gccggctggc 2220tgctcttaat ccataaatgt
ttgctaccat cccattgtta aaatttctca ccaatggaag 2280tccagtgtcc ttggggtgcg
acggggaaaa gagagggtgg gaaaaaagga ggcaggagaa 2340gttggccagg ccacatatgc
acacagcacc ttggacttct gtagggagga aggagctggg 2400accttgtcat tcattcattt
aacaattact gagtgtccgc tgagtaccag actctgctct 2460catgcagctt acagacaggg
aggaggcaga taaatgacat atttgcatat caggcaattt 2520aggcctctgt aattgctata
aagaaaaatg caggagagac gggagtgccc agggaaggcc 2580tctctggaga ggtgacatct
gaccctttgg aggaggtaaa ggagggagcc acgaggccag 2640cagaaaggaa aacatcccag
gcccagcaag gagcaaacct cccattcagc aaagaggaca 2700ggaaaactga gaccctgggt
ctttagggac tgtgttctag gtggatggaa gccgtgcgag 2760gcttgtgggc agggcacatg
gtgacaacac gcagtggcca ttgtgtgaga actcactggg 2820taggggggtg ggtgattggc
tattgcagga gtcgaggtga cagatgacgg tggcctggat 2880gatggtggga gtcatggggg
gccaagaagg ggctggcttt ggggggcatt tggaaggtag 2940ggccacaggc ttttccaaag
gtgctggacc ctgggaatgg gggagccgtt gtattataag 3000atagtaaaga caagagtggc
accgtcatct tcacaactgt ccactgcccc tcctcctgct 3060gggcaggaaa cccaagagga
tgggaatgag gtctcttaga gtcaccatgt gccaccctgt 3120cgccaccaca gagcctggca
ccaagcaggt gctagacaaa gatagggtga ctgagcattg 3180aacctgggac cccacaggcc
cacaccattg tccatgcccc agtgccaggc ctcacaagtc 3240ctccttcctg gaggcagcaa
gatagaaagc cctgtaccag gggcctagag acttggcagt 3300ttcattcact cattctttct
gatccttcac tcatgtgacg ggctgtgcgg cgttccatgg 3360ggaaccccag aggtgagcaa
gatgctggcc ctgcctgttc tgtaggggac agaggcaaga 3420cccaaagcca aggcatattc
ttgatctgat caagggctgc ccaggggagg gggcagctta 3480actagccagg ggcccagaac
ccagtgcctg gcaggtcgcc tggtaagagt tccccacagt 3540ccaggcaggg ggactcagct
gcacaaaggc agggtctcgt gggcctgggg caccatgtgc 3600atgatggaag ttatagccac
gaggagggtg gacagcagcc tggccatgga gggtcttgga 3660tgtcgcagca aggggtttgg
atgataagtg gctgggagct gtgaaaggat cctgagcagg 3720tgagcgattg agctggggag
ggaggatgcg ctggaagacg caatggaggc aggggaccta 3780gtgaggaggc cgccccaggg
gtttgggtgg gaagttatga tgagcccggg ggaattaatt 3840tcccactact gccatttgga
ccatggcttg ggtttttaca gagggtgtcc tgaaaatgag 3900cctctctgtg ctgctcaaag
tcctcccaga tggatgcgag gggcatttag agggaggcaa 3960aatctgcata gagaaggacg
cctggcttgg aggatgagag gggaggggag gcccaccaag 4020caccccacca tgagctgccc
ctcttcgggc ttcctctaat ggacccacga cctgctccga 4080gcctcagttt ccctctcttt
acactgatta tctgagaggt agtagggctc agtgatcagg 4140gcgtcactct gaagtcaatc
tgcttgactt tgcagcctgg ctgtgctgct gaccagctgt 4200gtgaccttag ccaagctgct
caacctctct gtgccttgac tctcccatct gtaaagtagg 4260agtgatcaga gtacctgtcc
ccacaggatc tgtgtaaggc ttacatgaga aagtgcacat 4320aaagcaacag agacaattga
aataaatgtc acctgttacc acctctatgc ccccgagtcc 4380ccatggctct atgactcatc
ccaaaatagc tcctttgtga tccagactca agagtaaaac 4440agggccaggt atggtggctc
acatctgtaa tctcaacact tcaggaggcc aaggtgaggg 4500gatcgcttga ggccaggtgt
ttgagacctg gtctctacaa aaaataaaac tataaaatta 4560gccaggtgtg ctggtgcacc
tgtagtccca gctacttggg aggctgaggt gggaggatca 4620ctcgaaccca ggagttggag
gctggggtga gctatgatcg tgctaccata ctccagcctg 4680ggtgacagag tgagatcctg
tcccttaaac aaaaggggtg cgacgggaat atggtgtcct 4740cctctggcag agggagggga
cgagggactg aaagaagggc aaggagccaa cccatcacct 4800gggatcttcc caatccagca
aaccttctca gattttgagg acagccacct cagtcagagg 4860tggccagccc aggacagaca
ggcagctctg cgctggggac tcaaacctgc catgtggcct 4920catgcaagag tctcagcacc
ctgttactgg tctgtttctt gcctgtttct cactagggat 4980gctgtgaaca tttgaggaag
tgggcggggc tgtcccaccc gttgccggac gtttaccatt 5040taccattccc tggccttggc
cccataaaag ccagtagggc ccactccaca tgcaggaatg 5100tcctagctta gttgtggagg
gggatgtcat gcccagtgag ggtcccctgc agtccctccc 5160ttccttgtat ctgatggggg
ccgctcaaca gagtcactgt ggcttgacac caaagaccct 5220tagctgggaa cgatgccaag
gggagctgga gggagccagg aagctgggag aagggccagg 5280gcccttcaca tccacctggg
aggactttga gcattactaa agagccccgt ttttggaaac 5340ccgctgtgta aaatcccaag
atacagccca aaggaagccc cgcctgcatc tggggtgcat 5400tttatttatt tttttatgtt
tttttttttc tcaagcagag tcttgctctg tcacccaggc 5460tggagtacaa tggcatgatc
tcagctcact gcaacctccc ctgaccaggt tcaagtgatt 5520ctcctgcctc agcctcccga
gtagctggga ttacaggtgc ccaccaccac agccggctaa 5580tttttgtatt tttcatagtg
acagggtttc accatattgg ccaggctgat ctcgaactcc 5640tgacctcagg tgatccactc
acctcagcct cccaaagtgt tgggattaca ggcgtgagcc 5700acggcacccg gccctggggt
gcattttaaa gctacacggt atttatggat atagtaagag 5760gagatgaact tcgcagtagt
ctggagcctt tgctctcccg gtgggtgggt caaaggcttt 5820ctctgtactg tggggaaacc
tgcgtcaaag gccaaataca ttgggatgtt tgcttgaaag 5880ggtctcaaaa tagagttgga
accctggagc gtggagaggg gcgacattca gttgctattt 5940aatcatgatt tgttaattaa
cagctcattt atgggaggca tcttagattc gtggaaaaag 6000cagggagtca gacatctaga
ctcaacctcc acttccctgc tgtgtgatct tgggcaagcg 6060gcttagcctc tctgggcttc
agggtttttt taatctgtaa aatgcgtctg ggagtgaatg 6120tcaggtattc aaatcacact
gggaaaatgg ggctaggaaa agccctagac tgagttagtg 6180ctagaacact ctgggtctca
gtttccttat ctgttcaatg ggtgcagaac tggaggttta 6240agtgagataa agcaggtgaa
gtacccacgt ggtgtgggct ggaggaagaa aacatgggac 6300aatggttcca catccctggg
tgacctgaaa attaagtgtg agatgtctca tgagggcacg 6360aaatgaatat tagtttttgt
tcccttcctc tgccacaaga ctttgagagc agaaaggtga 6420gagagacggt actctgtgaa
ggaaggcagg tccccggccc agcgcagtgc cagctcaggg 6480gattctgggg cgggggctaa
gtgcatggac tgtgtgggcg tggtgggaag ctccgtgaac 6540cagaaccagg agcaagaaac
agcattcctt gcgtggacgg gaaatgaggg caagaggtca 6600gatgtctaca gaagtctgca
ccccatgtac ttcagttctg tctgtgggtg cagcctctag 6660ggaggtgggt gtttaggtac
tgagacctcc gtctgtcctc tgaccatagg gaagccagtg 6720ggaagcaaag gtggggttct
tgagccagac ccagtccagc tctggtgcct gccctctggt 6780gcgagctgac ctgagatgca
cttccctcct ctgtgagctg tctcggcacc cacttgcagt 6840cactgccgcc tgatgttgtt
actcttccac tccaaaaggc agggaagtcc tgcttccgtg 6900ccccaccggt gctcagcaga
ggctcccttg caaatgcgag gctgtttcca actttggtct 6960gtttccctgg caggatgccc
gtggccgagg ccccccaggt ggctggcggg cagggggacg 7020gaggtgatgg cgaggaagcg
gagccggagg ggatgttcaa ggcctgtgag gactccaaga 7080gaaaagcccg gggctacctc
cgcctggtgc ccctgtttgt gctgctggcc ctgctcgtgc 7140tggcttcggc gggggtgcta
ctctggtatt tcctaggtaa cgttgtggga ccgcctggga 7200gaggcacctg gggaggactt
ggggtgactg tagcaggcac agcaggacag gactgggttc 7260caggctcagc cgtgcttagc
atattgctgt gtgaccttgg gcaagtcact tctgttctct 7320gggtctccct ccctgtcctt
ccagctggag atgctgtcag accctggctc caggtcctat 7380ggctcgggtc tgcttcctgc
ttgggcaaag tgccccaaag ctccccacca ggtggggaaa 7440gtgggccctc ctagcaccca
gttcttgtga gccagccagc ccacagagca taaacatcgc 7500cttcccttgc ctgcagtcct
cctgggttgc ccctgaggct tggagccaac ccagccctaa 7560agaaggaggc ccagaggcac
caatggtacc tggtaccaat tagtgcctct gctcacttga 7620gcctagccta ggttctcctc
taggctgggg accacagctc tatcccctct gggtctccag 7680ggtccagcat gaatggggga
cggagcaggc agctggagag cagccagcct tggggccctc 7740tgccatgtcc ttaattatgg
ctggcccctc cctgatgtca cagccctcag tcagtcccct 7800ggtgcccggg gagcaattgg
cctgtgctct gggcccattc atccaggcct ccgttcattc 7860attcatggaa taaatgctct
tgagcatcta ttatctttct ctaagattga tggagtctct 7920cctcttcctt ctgcctttga
cagtgggaag taatggagaa accaaatcgg actgtgcctc 7980tacactgtac actgtagaag
gcccattcat ttgttcattt actcagtgcc aagcacctcc 8040tgtgtgccag gttctgggga
tagcccctgt ccttgtgatt tagccaaggc atcagacctg 8100acatttacgc taaagcatag
catgtgatgg gacagaggaa gctgagggct gggaagccac 8160aggagggaca acccagatgc
ctgcgtgatc agaagcatcc cattaaacat cctgcaaagg 8220atagctagtg ctcttactgg
ctgaatctcc tggtggaatt ccaggcctgt tgaaagcaac 8280ctggggacca actttgtagc
agtggagaga aatccatgta ggcctagatc caaggggtca 8340gggttgggag tgtctggaac
cagcatctgg gagtgacact attgggaacc ccaggtctga 8400cacgggcctg cttgcaatga
cttatagtga ttctacccag agttgagcaa cgcaggcagt 8460agacgccatg tgcatttcac
caccagcagg aagccagtgc cccagatagc acagggctgt 8520gggggcctcc tcaggtagcg
ggctaattag tctacagggt aaaccacggg gcactgggct 8580ggagggccag gaactcacct
gccaattatt tctctttgca gaggagttta attccccctg 8640attatgctcc tggggtaaat
caccccccac cccaggagag gtgctccatg gggctgagga 8700cccaaggggt gagtgctccc
aagcctctgc tgggggaagc caactccccc acagagggat 8760taagggttga aggaggcact
ttgggagctg tttgaaagac tcctcccgcc ttgaccaggc 8820tgtgctcctg ggactgggcg
ctgggcaagg aagtggatca gagacacgcc ctgccctgtc 8880tggaagagga ggtgcacaag
tgaccagtga cactggagca ggacaggccc caagcgagga 8940ggacagcctg gcccgaggag
agggtgtggc tggcttccta aggatggtag caggaccctt 9000aataccacca accatatttc
ctgggtcctt tccctttcct gctctcccag gcaagagttt 9060tatgtgttct caagccccca
gcacccgcct gcccctgtct cctgcttcag tgagaaaaca 9120aaacagctta gaagagaagc
cccatatatg ttggcccacc tgccctccca gctgcatcac 9180gtgcactcct cctgggaccc
cgatcccgcc ccctctgccc acacaatggc ccagcaccag 9240caaggatgcc ctctctcccc
cagtgtccct tggggtgcct cccccatttc tctgctcctt 9300gaaagagctg tcagtccaca
cacccagtct ctctgtgccc tttccaacct ggctccctct 9360gccccccaac tccaatggcc
attgtcaagc tcgccaacat cccaggttgc taaatccaat 9420gtccacttct cagtcatcat
tgcacttgac ccgggggctc acccccacct ccagaagccc 9480tttcctccct agactttggg
ccgccaccgg gtcctttccg ctcagcaggt tgctttttct 9540gtgtccctgc tgatgggtgg
ggcctctcct ttctctctcc acccgcttct ttcgtgatct 9600catctgctac ccttagcttc
aagtgccctt tataccctga taacacccac atttgcattt 9660ctagcctggg cctctccctt
gagcttgtct ctagagctgc ccctgctctt cctcttaatg 9720tctaaggagc atctcggacc
ctatgctttc agaccatgag gtctctgcat aatttccccc 9780agacctgtac ctccaacatc
ccagtccaag accacttctt tctggcacct tccccttact 9840cctttctttc ttttccaccc
agccccactt tgccagcaaa cctggtcatc tctaactcca 9900aaacacatca aaagcagctg
acgccaatca cttcccaccc tctcctctgc cacagctggg 9960gccaggctct gtccccctgg
acatctctcc cctggagccc tgcaggcgtg tcctcgatgc 10020tctccctgcc tctgccctgc
ctccttagag cctttctcaa cagcagaggg accatttgat 10080aaagcaaacg aaatcctcta
acttcgctgc ttaaaacctc gcttggggcc aggcgcgtgg 10140ctcacgcccg taatcccagc
actttgggag gccgaggcag atggatcacc tgaggtcagg 10200agttcgagac cagcctgacc
aatatgcaga aaccctgtct ctactaaaaa tacaaaatta 10260accgggcgtg gtggtgcatg
cctgtaatcc cagctacttg cgaggctgag gcaggagaat 10320cgcttgaacc cgggaggcag
aggttgtggt gagcggagat tgagccattg cactccaagc 10380taggcaacaa gagcgaaact
ctgtctcaaa aacaaaacaa aacaaaaaca aaaagaaaac 10440aaaaaaacca cctcccattc
ctcccatctt acccagggtg aaagcccgag tcctcccagg 10500cctggaaagc cctacccagc
ctctcccctt ccccatctca taccctcctg ctgtcctgtt 10560gctcactctt tgctgctcct
gaaacacacc aggcctttgc acttgcccct gcctgggaca 10620ttctttccac agatgtacat
caccttcttc cctgacctcc atatcgcagc ccgtcccatg 10680ccctgattcc caccgcactg
accacctcta acctgttata cacgatgtgt ggtttaccgt 10740ctgattcctt gctagtctac
aagctattaa gggcagtttt ttcttgatag ttctgtccgt 10800tgttttgctc atatagtccc
aagtactttg gctcagttcc tacacatagc aggctctcaa 10860gaggtattta ctgagtaaat
ggataggggt gtaaaccagg gctgtgagtc taccctcttc 10920acttcagcca aaatagcctt
tgcaaaacag aagtctgatg acatcattcc tgattttaaa 10980cttttcatgg ttacccttgt
tcatcgggta aagacccaat gggccctgcc ctgcggaggc 11040cccagctcct tgccgcccct
ccccatctct gactgctcca gccaaacagg ctttcagccc 11100gggtcctcac catggtcccc
gtgctaccgg ccccgtgccc catgctgctc cctctgctgg 11160aaggtacttc cctccctctt
ctcttaccaa tttacagttt ccccatccct acatctcagc 11220tggagggtca ctccactctg
gcccaggctg agtgtcctcg tcacatcccc tcaacagcac 11280catgtggcac tgctccctga
tggcactgcc cacagacaga tgccacatgc tgtgtggttg 11340ccagagccac gcctttctta
cccaccactg tcagcttcac aaggggaggc acatctgtct 11400tggttaactg gcgtacccca
tgtagtaggt ggttagcaca cactgtggga tccctgggtg 11460acctcacgag tggaaggatg
cctagtggtg ctgacccatg accttggcct cctgggccta 11520tgtggatttc ctggccttca
tgtcattggt gtcctggact ggtcactgtg tcagcctctc 11580cctgggaacc tgtaggacac
catccatctg ggagcctttc acctccctgg taccttgcag 11640ccagtttgtc atccaataaa
ctttagatga ccatgatgac aatgggagtg acaaagatga 11700tgatgatgac attgatggtg
ccatggagac ccaagacact gaggctgagc tgagggtgtg 11760ggtggcagga gaaggcatgg
aagagacagg agactttccc acctgcttcc tccactaacc 11820ctgctggttc cttcctgggc
agggtacaag gcggaggtga tggtcagcca ggtgtactca 11880ggcagtctgc gtgtactcaa
tcgccacttc tcccaggatc ttacccgccg ggaatctagt 11940gccttccgca gtgaaaccgc
caaagcccag aagatggtag gaaaggatct gggggatgag 12000agggagggaa tatgggggtg
aaaagagagg ggtggggtct gatcacatgg agccagttgg 12060tcaacccatc tggagcattc
acagggacca cagccctgct ccaggcacca tggaagcaga 12120tgaggttgag ggtcatggga
aagttagtgg atgtttgggt caatagcact cggattagat 12180cctgatcatg cctcttacca
ggggtggagc atgaccttgg gaaaggtccc acagtgcagc 12240tgacactatt gagggcccgc
tcctgcccct ccgttacagg acggtggccc gctcctcccc 12300ctccgttaca ggacggtggc
ccgctcctcc ccctccgtta caggacggtg gccgctcctg 12360cccctccgtt acaggacggt
ggccgctcct gcccctccgt tacaggacgg tggcccgctc 12420ctccccctcc gttacaggac
ggtggccctc tcctccccct ccgttacagg acggtggccc 12480tctcctcccc ctccgtaaca
ggacggtggc cctctcctcc ccctccgtta caggacggtg 12540gcccgctctt ccccctccgt
tacaggacgg tggccgctcc tgcccctccg ttacaggacg 12600gtggcccact cctgcccctc
cgttacagga cagtggccgc tcctgcccct ccgttacagg 12660acggtggccc gctcctgccc
ctctgttaca agacggtggc ccgctcctgc ccctccgtta 12720caggacggtg gccactcctg
cccctctgtt acaggatggt ggctcactgc acggaggctg 12780gtctactgcc tgccactctc
aggctgcagg accactgccc agcaaggcag gccagaagtg 12840ccggggagtt attcccagga
gcaaccctga accatgagcg ctggagtggg tggatcaata 12900ccgcagcttc tttggccctg
gcagggggaa tagttcacag aatgttccag gctgtctccc 12960agagatgccc tattcggctg
agctcagatg ctctcagctc tacactgcgc attcatggcc 13020ctgtgttggt tgcccacttt
ccagtctctc cctcccaact actgtttccc agaatcacct 13080ccaaataaac cacttgcccc
accttgtcaa tggagggtct gcttctgagg gacccagcct 13140gaggctgccc gtttcctcct
ccatgaggta ggggtgataa caacaggacc cggctgcaga 13200tttgttgtgg gttgcagtga
agttgagata acacgaacac tattcccacg ctgcgcaaat 13260gcttaagagc ctgtaatcct
gccagcagcg ctgtagttgg agatgcgcaa aaactaccca 13320tcagagctgc tggcttgtcc
caggccatgg gaggaggtgc agaggggacc caggagccga 13380gtggggtttc tcagagttga
ggagtgactt ttggcaaggg gcagaggggt catcagcagt 13440gcaggtggag gtgagagtcg
ggtgtagtgg aaacagaaag aaggggatgg ggtgtgagat 13500tcatgcatgc cccggcccgg
ccactcagca ctgtgtgacc gtgatcaagc ctgtccacct 13560tggagaatca tgcatggagc
ggggctgcca gtaggagcaa agggcacctc caggtaggaa 13620gtgggcctgt ctgccctgca
gagggtccca ggggctgttg tcttcccttc tcacagctca 13680aggagctcat caccagcacc
cgcctgggaa cttactacaa ctccagctcc gtctattcct 13740ttgggtgagt tgtccttgcc
cctgaccagc tcctgcaaga agctgagatt caaagaatgg 13800gaggggcctc tgtaggcttc
tgatgcaatg ccttcatgtt tcaaatgggg aaactaaggc 13860atagagaggg aacttggctt
cctgcatgtc accctccctt cactgggctc atctgtagaa 13920tggaaacatg ggtgtgatag
gtttgcacca gacaatgact gtgatggctg atcaagggcc 13980tgacaccatc aggcgaggcg
atgttggagg ggcatggggt taaaagcatt ggctccaggg 14040cccgactgcc ccgtccacat
ctggttctgc tacttgcggc atagtttatg agacacaagt 14100tcacctctca tgcctcagtt
ttctcattcg taaaataagg attatgagag cgcctccttc 14160agaggtcgct aggaggcttc
tgcgtgaaga cggacagcaa tggctgaggt gcggaaagtg 14220ctcgatgtgc atgagcaggg
gtggagctgg ggccagacct cagaatcctt ccctggcctc 14280tctcacttct gcctgcctta
gggagggacc cctcacctgc ttcttctggt tcattctcca 14340aatccccgag caccgccggc
tgatgctgag ccccgaggtg gtgcaggcac tgctggtgga 14400ggagctgctg tccacagtca
acagctcggc tgccgtcccc tacagggccg agtacgaagt 14460ggaccccgag ggcctagtga
tcctgggtca gtactgcgag tggaaacgtg gggttggcct 14520catgaggttg ggggaaacaa
gctgtggtgt ggcccgggga ggctgcctgc caggcctggg 14580gtgctgtcag ggtgggcccc
ccaggagagc cccccaggtg aggtagcagt gccattgcat 14640tcaaggagcc aggaaagaag
ggtgggatgg gggcatttag ggtaaatctc agacaaggct 14700ggctccaagg gtctcctcta
attttatttt cattgtattt tcttttcttt tttttttttt 14760ttgttcttgt ttatttgttt
gttcatttcc ttttatcaga agccagtgtg aaagacatag 14820ctgcattgaa ttccacgctg
ggtacgctat ttttttttcc cctccccatt ttccttttga 14880gttggcattt gtcttgactt
tgttgtgtat cagggggaca catggcttct gttgtgtgtg 14940cagggagccc tggccaagag
tcacccaggg gatgccatgg tggactcagc gatgtgtccc 15000aagcaagtct tggagcctgt
agggggagag gaggtggcga cgtgcatgcg tgtatttgtg 15060tgtgtcttgt agacgggtgt
gcatgcgttc ctgtgtgggt gtgaggatga gtcaggttta 15120gtggtccacg aacgtgactc
tcctctatca ttcacttcaa cctgcccaca agctagtttc 15180cactgatggt agaaaatcat
cttgccaatt cacggtttgt cagtcacgtt ggttttaaaa 15240cttggtcttt tggaggtagc
ggtgccattg cattcaagaa cgctccttcc ctcttttcct 15300ttccttccca gtcaggctca
tcagccctcc ctccctacct ggtgccgtat tgctagagtc 15360accttgcatt tctccaagcg
gacccacaat ctttcagctg accagcacag tcaccacgct 15420gcacaaggca ggaggtgctg
tccaagttgt agtttgtgtg agttgtgcag tgcaccaact 15480ggctgctgga ctctatggcc
cctaaattct cagattcctc ccacactatc tagtgttgtc 15540acccagagcc aaggtggggg
tgagcgtctc aaccccttct cagggaggga ggcagagttt 15600aaatccttgt tatacctttc
cttaccttcc cgtcttccca tcctgctggt caaatgcttg 15660cttctttgtt ggatggaggt
gatgaggtca aagtacagtt ttcaaagagg tgaaatcatg 15720attctcatac aaagatagag
tgaccatgtg tcaaatattt atttggctga ttaatggggg 15780aacgagtaga atggtaaaga
atgcaagaaa ctgatctatt tgtctatcta tctatctatc 15840tatctatcat ctctgttgat
atctgtctgc ttgtctatct agttatctaa ctagctagct 15900gtctattatc tatctgtctg
tctctctgtc tctgtctgtc tagctagcta gctgtctgtt 15960tatatctatc tatctatcta
tctatctatc tatctatcta tctatctatc atcaatcatt 16020aatggaaaaa gagaattgct
agaataagat taccaagtta gatacaaacc tggttaaggt 16080cctaccaggc aagaaaactc
aaacctttgg agttgtcttt tctagtgaat taaaatcatt 16140gacagcttat tacagtcttc
tgaaagttaa catctacctc tacagagtct gaggttgata 16200atctacaacc aatagtaagt
cagagatatt actcctgaga gcctcagggg gacttaatca 16260gatgatgctt ggagacagag
actggctcat tgcagcctgg acaccgaatc tggtcaattg 16320ctgcctgatt ttgtatagcc
catgagccaa gaatgacata tatatatata taacagagtc 16380tcactctgtc atccaggctg
gagtgcagtg ccgcgatctt ggctcattgc aacctccacc 16440tcccaggttc aagcaattct
cctgcttcag cctcctgagt agctgggact acaggtgcct 16500gccaccatgc ctggctaatt
tgtatatttt tagaagagat gaggttttgc cgtgttggcc 16560aggctggtct cgagctcctg
acctcaggtg atccacctgc ctccacctcc caaagtgctg 16620ggattacagg tgtgagccac
cacgcctggc tccataggcc atttttcaat tattaaaaaa 16680tataaaagtc agccaggcat
ggtggctcat gcctgtaacc cagcactttg ggaggcagag 16740gcaggcagat cacctgaggt
caggagtttg agaccagcct ggccaagaag gcgaaacccc 16800gtctcttcta aaaatataaa
aattagccgg gcatggtggt gcgcacctgt agtcctaacc 16860agtcaggagg ctgaggcagg
agaatcactt gaacccggaa gatggagctt gcagtgagct 16920gagattgtga ggttgtgcca
ctgtactcca gcctgggcga cagagtgaga ctccatctca 16980aaaaaaaaaa aaaaaaaaaa
aaaaaaagaa agaaagaaag gaaaggaaaa ggtcctatgg 17040aaagttattt tttctcctgc
aatagaagtg ctatgtaata gcctcatgtt gcctcgtgcc 17100tctgtgtccc catgttcctg
gcagttgttc tgtaattatc tgtgctcagt gggtgttcgt 17160ttcatgaatg aatgattgaa
caaatgaatg aaagcatgaa tgaggagact ggttcagtgc 17220atgtccagag cacagagtct
cagggggcag agataacaac tcaaatcctt gaagtcgact 17280ttatgagcac ttccttcatg
ccaggcccca ttcctgcgct gaggacacca ggatgaccgt 17340gtcctcaccc ctgccctcgg
aggagcttta agccccatga gggagacaga cacataaaca 17400gattctcata acaccaggtg
ccagtgtgag aatagaggcc ccagaggcag tggagagagg 17460gaattgttcg ttccaaagca
gaagaggggg caaatcaaga gcctcacaca gagtcccaga 17520tctacaggag ggaggggttg
ctcctgactg ggggatcctg gaagacttca tggagggggc 17580atcagatttg ggcatgggcc
gggcgtggtg gcacaagcct gtaatcccag cactttggga 17640ggccaagttg agcggatcac
ctgaggtcag gagttcgagg ccagcctggc caacatggca 17700aaaccccatc tctactgaaa
atacaaaatt agctggtcat ggtggcccat gcctgtaatc 17760ccagctactt gggaggctga
ggcaggagaa ttgcttgaac ccaggaggtg gaggttgcag 17820tgagccaaga ttgcaccatt
gcactccagc ctgggcagca agagcaaatt ccattaaaaa 17880aaaaattagc tggacatggt
ggtgtgcacc tgtagtccta gctactcggg ggtgggggtg 17940gggggctaag gtgggaggat
cacccgagct caggaggtcg aggctgcaat gagctgttgt 18000gatcgcatca ctgcgctcca
gcctgagtga caggctgtct caacaataaa ataaaataat 18060tttcaaaaga aaaagaaatt
caggcatggg ggtaggcagg aatttgtcag ggcgagaaga 18120agaaagggtt ccctgagcag
agggaatggc aggggcaaag gctgggggag gggaacaccc 18180aaggcgtgtt cagttaattc
ctcccagccc cgagaggtgc caggctccct gaaggtgttt 18240ctgattaaca agaggttagc
acacacctct ccacggaatt cgtctcaaaa aaaaaaaaaa 18300gggtaattat taaagtggca
agagcaaaga atctgcttgg agcaagattt aaagaacaca 18360aaaccctagg aagagccagc
catctttccc cagctgctgg tggaggccct gtcccttccc 18420taggcagaca ttgttgttct
ctctctgggg aggtcagctc cccactgcag tcagcatggc 18480caggggtcag ggagaagggg
ctgagccaca ggtggcagca tcagagcaaa gtgtattcac 18540ctccattccc ttcctggtcc
tcagcactgc ccagaggagg tcataggaca gggattatta 18600ttacatccat ttgacagaac
ttggaatggc taagccactg gcccagactc agttaactac 18660ccagaggtag tgaacatcta
cctctacaga gtctgaggtt gataatctgc aaccaatagt 18720aagtcagagt tattactcct
gagagcctca gggggactta atcagacaat gattggggac 18780agagactggc tcactgcagc
ctggacaccg aatctggtcc actgctgcct gattttgtat 18840ggcccatgag ccaagaatga
catcatcaca cagctgatga gtgttggtgc taggtgggga 18900gggtagtgcc cctccctcct
tctctccagt tccctcccca tataccccct cccctggggg 18960cccagcagat ggcactagcc
tggggggcct gccctcaggc tgaccaagct gacaggggga 19020cttttgcttg cctgtggcct
tccaaagaag acgatttaaa gcagagaaaa cagactgaaa 19080actcaggttt tataatttca
tgtcaccagg ctgcctccca catcccaggt tcattcctaa 19140atccccactg gctcctggaa
gaacaccagg cttctggcga ggtttaaatg agatactgga 19200tgctccacgg gagagaacat
gttcactggc agaccctggt gcctagatcg aacacacagt 19260cggtgcacag tcactgtttt
gaatgaatga atgaatgaat gaatgatgca ggtggtactg 19320ctttgtaagt tctagcagtg
catcagagct tacggattag atggaagagc agagactcac 19380tggtgtgtgg ggtagggggg
tggggtatga tggtgaaaca gttgtgaagt gaggcagccg 19440tgagatgggc taggtctgag
cctcaggcgg ggccagctgc aggatgaaaa gtcacaggcc 19500tttctcccca gccctacctg
ctccgtctcc ctcacaccca cctgaggaac caggcactgc 19560ctttattgag cccctactgt
gcaaggtgct gtgctgggca ttcaaacgtg tatcatccta 19620cagcctctgc tggcggccct
gcaagggtgg tgttatcgtc ccattctata gatgaggaaa 19680gcaaggccca ggaaagatta
ggtggtggct gggcaaaccc agatgtgtct ggcccaggtc 19740tgtgcaatgg acacaatcat
tgaaagtatc tcatacagct gttgtgggca ttgagcgaga 19800cagtgaggga aggcattcag
ttcagtttct ggcctgtagc aaatgcttga taagcacctg 19860ttttattctg atggcttcac
catcattagc tcaaagctca tgtcctcccc ccagggcagc 19920ctcccagact cctccttagg
gcactccctt ctctctaccg gaagtgaagc cctcatccct 19980tcttctcctc attgcctgtg
gcctcgctgg tctccacagc agccagagga gtgtgtggtc 20040caagccagcc catgtccagc
cttgcccaac cttctgtggc tccctatggc tgcaggagaa 20100agcagcgccc atcctcggaa
tggcctgggc caggcctccc tgccttcagc ttgtcctcta 20160gatacacgtg ccctgtgtgt
acttttctca aagctgcccg gctcgcccca gcctctttgc 20220tcacgcaggg acccccagga
tgcccccagc ccacaggccg ggtttgaagc cgtcacctcc 20280tgagctattc ttgcctgttc
tgtgtctgtc tgtccccgct gtcatccatg tccccaggca 20340gcgactggat ttttacctgg
gcactgagaa ggcgtgaagc tcagtgtgtg tccattccat 20400gagtgaatga ctgaaccaat
gaacaaatgc atgaatgagg atactgacag ggaaagagaa 20460ggatggggta gagcatgtct
ggctatcccc acccggctcc cctgcccagc ccatcctgcc 20520tggtggagga ccttgaggga
cctggctccc cagggtcccc tccttctggc tcacaggaat 20580caggggctgt gcccctctcc
ccgctccagg ttgttaccgc tacagctacg tgggccaggg 20640ccaggtcctc cggctgaagg
ggcctgacca cctggcctcc agctgcctgt ggcacctgca 20700gggccccaag gacctcatgc
tcaaactccg gctggagtgg acgctggcag agtgccggga 20760ccgactggcc atgtatgacg
tggccgggcc cctggagaag aggctcatca cctcgtgagt 20820ccctgggaag gagggcagga
gggagggctg gaaaagggag tggttgatgg gggagttgaa 20880agtcacacac agcattctta
gacaagggag ggtaggacct tgggcctggg tatctgggag 20940acaggacggc tagcttagag
gggatagggg agaggaggct ggagatggtt gtgtactggg 21000ggcgcttccc ctccgcgagc
ctcagtttcc ccatctgtaa caaagccgtt gttgtagatg 21060actcctgaag tcagctctgg
gaggcaccgt ggcttgttgg gatgtttcag agtctggctg 21120cagcctggac tttcaacctc
tgggctcgtt cctaaatcct gactgcttcc tggtagaaca 21180cccaccctct ctgcttccca
ggcttctggt ggggtttaaa tgagatacta gattccccat 21240gggaggggat gtcttcactg
ccgggccctc gtgcctagac caaacgcaca gtaggtgtgc 21300agtatctatt ttgagtgaac
gaatgaatga tgtaggtggt actgctttgc aagttctagc 21360aatgcatcag agctcacgga
ttaaatgtaa gagcagagag gcttactggt gtgtggggcg 21420ggggtgtggg gatgtgacgg
ggaaccccct gtctcctagc tgcgtgccct aaggcaagtt 21480actttgcctc ttagaacctg
cttaccttgc cggatcattg gaggatttaa atcagactat 21540ctgtgccatg atccttacac
atagtgagtg cctagcactt acacgctagc cattattgtt 21600atcattatat atgctctaac
tgggactggg ccgcaaaagg cattgagtgc caggagccat 21660ttggactttg atatttggta
agtggggagc tattgaaagt tcttgagcac agaagtaggg 21720ctttagggca taagatatgg
agtggagtac agaagtgatc aggatcagag ggcaggtggt 21780tgggggtggg gaggagggac
tggaaatggc cttgacctct gggagcctgg tcctcccaca 21840ggatggggag atgggtgtta
gcctacaaag cactgcagga ggtggggaag atgctctggg 21900ctgggcagtt ctcagcgatt
gtttattgag cacttacttt gtgctgggcg tcaggctgat 21960gcctcttctg tctcacttgg
gctgtggcca gcctccaggc agatggggat gggaccagtg 22020tgttcagatc aagcgcagtc
tttgaatgtg agctggcaga ggttcttgcc acacccctcc 22080cccagggcct ctccaagctg
ctctctcctt gtcacccctc ctgctgtcct gctgggtgtg 22140acctcgatct gcggcatgtg
cgtgggctga gtttctggag ggctctggga agtgcagaga 22200agccagacac catctgactt
ccaggtccaa aaagggtggg gacacttagg ggtttcccct 22260ggggcttctc caggtgcctc
tcagcctggg aggggacctg actgccaggc ccagctctgt 22320tcctactcac tgtggctcct
ggtggctctc tcatcccaga cccttggaga agctctaaaa 22380tgacaggtca gacaacattt
ggggttctca agcttgtacc ccagacacct gctagggaat 22440gggggtgagg gggactttgg
tggtgatggg aagacagagc aggtggcccc ttgctcagtt 22500tcaaccatgt gctttgattc
tgcgttccat atttcattta taagaagggc tctgccgcta 22560ggtaaataaa ataaaacccc
ccaacaatga aagctaaagc ccccattaaa ggtgacctcc 22620aggtctcttc catcctaata
tcgtatctcc cacctcccag ggaagatgag ccggtaaggc 22680caaaaaggac gtggctgtat
gggagggtgg ggggcaccgg tgtggttggg gagacttggg 22740tgctgcagca ggaagatcaa
gctggaatgg taggaagaag ggacgagggc ctggggggtg 22800aggggggtgg tgcctgctac
tggaggccac ctccctcccc tggcaagagg ccaggggaaa 22860tgccccatcc ccggaccctg
ggcaccaaga ccctcccagg gagacccttg gggttatgcc 22920caccatgcct ccagctggct
gcaggctgct tgggtgccat gtgtagcgat tttgaggctg 22980tgcttggagg agctcaggta
ctcgcttgcc aaggtgcctg aaatccctcc agcagcaccc 23040cttcctcctg tcaaggccca
ggtgcccacg cacagtctgc aggcagggag gctattgggt 23100tgcccattca gagggaggtg
gggccgttag tttcttataa attgacccat cagatgcgct 23160ggactccaga gagtgttgcc
attgacactg ggaagtttgg gggaggttgg tgagagggtg 23220aaggggagct ggggaacccc
tgtctgagac aggcagacca ggggcaccta catatgtggg 23280agggtaccag ccatcacaga
cagtgcctag cgcaggccta tctctgccat ggactgccgg 23340tagggcctca gtttccctat
ctggaaatca agcagctgac cccaacagtg tcaccagtct 23400tttcagggct gacattccag
atttctaaaa gcccagaagt ctaagatacg gttatttgtt 23460ccgagcctcc caggcgccaa
gctctgggca gatttctggg gcaccctggg ggtcacgaga 23520ccacacctgc cttctccctg
cctatccttg agcacagcca ggagtcgcgg tgccagaaac 23580ggtggtccct gcagatgcca
gtctagtctt cctgccaggg acgctagggg tcacagatga 23640ttctgtagca gggtggaggg
gtctggggag ggagcatggg actcgagcca gccgtcatca 23700tcaaactgta agctccagaa
gtctggggaa cctcctggcc tctctcaccc gaggagctag 23760cctggtcctt ggagggcctt
cagtctgtcc tctggggctg gggagacaca gaattctccc 23820cacagacaca cagtggtctc
tggtaggaga cccggaccca gaacccagat gtccagactc 23880ccgtccaccc tcccccagca
gccgcctgcc gccctccctg ccactcccct cccagacccc 23940agcccagcct tgccaccttt
ctgttctgcc agggtgtacg gctgcagccg ccaggagccc 24000gtggtggagg ttctggcgtc
gggggccatc atggcggtcg tctggaagaa gggcctgcac 24060agctactacg accccttcgt
gctctccgtg cagccggtgg tcttccaggg tgagaggtca 24120ggggtccctg gggcagggga
ggggtggtgg tagaatccaa gggccctcca ctgggctcac 24180tgctcacctt ttttgcccaa
attgaggatg ggatggggag agggaagatt ctggaagctc 24240ctgctgctct ccactcccca
ccccggcccc cctcttcctt ccgtcgtttg cacttccacc 24300cccctcttcc ccttgaccgt
cctaccattc gcagtctctg tcttcctggc atcgctccct 24360tgcttccctc ctctttctct
gtccttcctt ctctctcctt ttctcttttc tgtgctgacc 24420gcctctcctc cctcctcact
cgcctggacc tgtgtcccct cccctctgcc cctcaccccc 24480tccctgccct ctccccttgg
cacccaccgg tggctgggcc tggaacacgg gtctgtttgc 24540agcaggacta agaactcctt
ggattccgcc ctagacagtc cgcttacagc caagagggcg 24600cagggagctt ggggaggtgt
gatggcagca cagccaggcc atggccactg gtgtggcagg 24660tctcccactg ccttcccagc
ccccaccctc ctcctgcttc gggacctccc tccttgcccc 24720cttcccagga agggcacgtc
ccaccccgca tgggacagct gtcctgggcc tggaccagcc 24780atacttctgc gcaggaggcc
caaactttgc catttctgga gctcaggagg ggaggatggc 24840agagaggagg ccatagagtg
ttggcagctg cttctgcctc acctctctcc ccactcttct 24900ccctcccact cagggtccca
gccctcttct cggtttatcc ccaaactgtc tggcatagac 24960ctgggtcccc agctggccaa
actggagcgc taaatgggta gcagagctgt tcccttggga 25020gtctgacaca ggctcgaggc
gggagggaac aaagggcttt gggggccctg gcccaatgga 25080gagatggcca gggcaggtga
gcatgctcct gtcctgaccc ctggacccct cagcctctca 25140cggtgtagcc tcaaccaagc
cactcctttt ctccgaacct catcttggaa aaggggaaca 25200gctctctctc ccccagccac
caccgtgagg cctgtgcagg tgtgaatgca ttttgtaaac 25260tggcgagtgc tgtcccgcaa
atatcaataa ctaacacgga tcgagcactt actacatgcc 25320aggctgtttg aatgtttatg
tctttttaat ccactctact accctatgag gtgtgtgcta 25380ttactgtcct cattttacag
atgaggaaac tgagacccag attcacacaa tcacattcaa 25440ccacagcaat ttgctggcag
aggtggtagg ggtggtgggg ttacaagctg cgccagcctg 25500ctgggaggtg cagccagggg
acccctgtgt aacagctgct ctcctggtcc agcctgtgaa 25560gtgaacctga cgctggacaa
caggctcgac tcccagggcg tcctcagcac cccgtacttc 25620cccagctact actcgcccca
aacccactgc tcctggcacc tcacggtgag accccaccct 25680gcctgcccac ctgccctctg
ccgcaagcac actacaggtc cctggtgacc cgggatgaga 25740gggggcagtg tcccgcctct
gctgaagcgc ccacaggctg agccctgggt acacatcctg 25800ccagggtgga gagggctgtg
ggcgaggtct ccctctgtgg gtcacagcaa tgcctgtttg 25860ttgagtgact gacagacttt
agccccacct gggattctgt gtttccttct ctttgttgtt 25920agggaggtgg gttcaccaac
ctggccacac cccatgggcc acctgatggc ccgctcctcc 25980ctcccaggtg ccctctctgg
actacggctt ggccctctgg tttgatgcct atgcactgag 26040gaggcagaag tatgatttgc
cgtgcaccca gggccagtgg acgatccaga acaggaggta 26100ccacttcctc tcctccctct
ggcttccttt cctccctccc cctccctctc ttccctcctc 26160aatagtgacc ccctcattgg
aagcccaagt ccccaatctc agaggggcag caaggggagc 26220gagcagaggc tggggctggt
gtcaggcctg ttgcccttga ccttgtcctc gtcccagcct 26280ccgccctggc cccggcttcc
cctctggcta ccccagaggt ctcagacacg tttggtcatc 26340agacaccttg gatgtttatt
ctaattacag caaaattgtc tcatcttctt gggtgctgta 26400accccctctg gcaccctcaa
tccttcaata aaatgtttcc agagccaaag gactcatggg 26460cactttggtg ccttccctct
aaacccaagg cgtaccatca gaggtgcctc tcccttatca 26520cgaacccctg ctgcacagcc
aggcccaatc ccattgcaca gggtaacatg gaaatcatgg 26580gtgccctgga tcccccgaat
ccccaacggg gcacttgccc tcttccctgc tcttgccctt 26640gctccctctg gtaactaagt
ttccgacaaa gaagtgagtc cttacagaga tgtgagcaag 26700agacagtggg gttaggctaa
gcgactaccg ttgccagggt cactatggca tgaggccagt 26760aggtgcccac tgggcctggc
caccaggaag ccatgggtgg tgccgacagc ttcagaggcc 26820tgggctgggc aaggaggcag
ggaaacagag acagggtgta tggacaggtt ttcatttgtc 26880tgggaagaaa agagaactag
gaaattcaag gaaggggaca tttaagacgg gagaggttcc 26940atatctcaaa tgtgtggatc
atcccagcat ccccagaggg agagaaggag gctcaggtgc 27000aggtaatatt gtttagagtg
gggagggtgg gcaaggggag agggaggccc tcccatggct 27060ccattgttgg ggagcagagg
tttggggaga gagaagagga atattgaagc agcgatggca 27120gagccaggga gaccctttcc
ctgggaatcc ggggtgaaaa cggtcatcgt gtcagcgtca 27180ggaaagagga gactctatcc
ttcatcgcag gttgggcctc tgccctccct tccaacctcg 27240gaattctggg ggcctaatgg
gttcagagtc tagtatgaaa gatttgtcat ttcttgattt 27300cacagagttt gaatatctaa
gatgccagtc ttggaagatg ccaaaattgg aaggctctgg 27360ggctctagaa ttcttggatt
tctggggtgt gtgttcccaa tcaccaacac ttgtaatttg 27420cttgttggct gatcctattc
aaaaggatca tccagacaaa aggtgacgaa gaatgacaag 27480gtttgcttga ctcctttttg
caatttatct gggactagga ttaaaagaaa ggagaagaaa 27540tactcatggc atgatctagg
gctatgctgt tgggggtaac atggggagtg actttgggcc 27600tgtgctgttg ggggtgatat
ggcgaagcag tgccttcagg gctttgcatt tggtggtgat 27660atgctgatgg agtgtgacat
caggcctgtg ctgctggggt gacatgctgg ttcagtgatg 27720tcaggcctgt gctgtctgga
gagcagaagg cttctgtagc atgatggggg cacctctggg 27780aacggctgcc ctgacccctc
atggagctca cttgaagcct ccttgctact cacctaggct 27840ggggatggct ggcttcaccc
ccgctcacag gaacccgcag ggtgaccctg agatggatcc 27900atgattcaca gttctgcgaa
tgatgagaac atgttttcct gcctccctcc ctaccgcaga 27960gctgaacttt atgtctcagg
gaggcccaca aaggagaagg aacagtcttg ggtctgacac 28020tccctgtctc atccctcacc
cccttggcga ctccatttgc cagaggcggg gccccagcat 28080tcaggggttg tggggggttc
ggtggcctgg agttaggtgc taagacaggc gttcagtgca 28140ttggcccaac aacttgtgtg
gtcattggcg ccgttcctgt ttcccagaga aggaaatcaa 28200ggctcagcag gattaggtgg
cacgcagatg ggtccacaga tggggtctct cccatacccc 28260caacagccac aaacagcagg
ccaaaggatg ctccacccca tgcttcctgt gggaaggccc 28320tcctccctcc ctgatgcagt
tgggcaaggg tctgggtact ggggagacag ggacttcgtg 28380agctaccctt gggtaatgac
agagagagtg tggaacacgg atgggagagt cttttcccta 28440atccaaagga atgatgcctt
gatggtgaat ttgaggcact aggacagctt ccaacagggt 28500ggagggatct cgccagagtc
tgagcaccac tgagctatag aatgtgtggg ctgaactggt 28560cctagcaccc aacctatggt
acaggtgggg aaactgggac cagcgagggc taaggacttg 28620gcctcttgtc cctgtctttt
ctgcctttca gtggtggaga tgggcttcag ggtgtagcca 28680agcggtggct gggtggtgag
gatgaggcct gacagctccc tgtgccccca tagctccccc 28740tctctctgtt cagtcctccc
tcgccacacg ggggtggaag tgctcagcag gggctggcat 28800cagggtttgc atggatccct
agatgcaccc ccttccttgt ctgtgaaacg aggggttcag 28860gccagcccag ggccccaatc
tttgattgct tacccatcag gaagctattg tctcccatac 28920aagttgtgtt tattaattcc
tggccaaacg ccattccaag tcaggctggt gaggtggaaa 28980gcgcttaagt gtcgaagcca
gacaggccag ggctcagcac ctgtctcctc tgcttcctac 29040ctgggcgagg acttacatct
cccaacctca ggtaactcat ctgaaaaaag ggcgtgaaag 29100agacccccac cctgggaaga
ctaagtgaga caacgcgtgg agaacattgc acacgcgggc 29160ttaggtcaag tgcaacaaac
ctgcgttcat caccggctct cactctgctc tgggcaggca 29220caagctgagg ggtttatggt
gctggctctt tcagcctcaa caacccagcg aggaagcagg 29280tgcctgtact gccttcacag
accagtgaga cacccaagac acagagagat gaagtaattt 29340gcacaaagtc acccagctct
ttgagccaga gttaaggcca ggcagcctga tctggagtgc 29400acgtgggtgc acagatgcat
gtctgtgtgc gtgcgtacat ccatgcatgt ctgtgcacgt 29460gtacgtgcat gtgtgtgtgg
tccacgtgtg cgattcttcc ctctgagcct ctagcggccc 29520atgccagctg gtgactccct
cagccaaggc atccccagcc aacccactgg catctgggtg 29580gggggatcga cagtttctgt
ggctgtccca ccagttccag agcggcctgg gaagtcccag 29640ccctttcttc tcagactttc
attaagggtc cagggtcccc aggggcagac tcttgtcccc 29700tccccgcaga ctcctcctgt
gtgaatgaat gtggaaggga aggcagaggt ggcgcctgca 29760aaccatccgc actgggccac
tgtgccctct agttatgatc atgggcgata gtgatcatcc 29820catgtagatg ctgagaaatt
cttagaatga gcatttgttg gaaatctgct tgtgtgggtg 29880gcaaagacat gagaggtcta
gggaagagca gattttcaga caaggcactt tagggagggg 29940gaggtacagc cctttggccc
agaatgccca ttgatggaga gggcgggtca ggggagaggg 30000tatcttaacc ctcaagtgcc
agcgtagtga tgaggaaagg ctggcctggt gggcccccca 30060tggactaagc atccttaggc
acttcacctg actcctctga gactgtggtg cctccttcac 30120ccctgacctg cctgctttct
acctagcttc tcccggtgcc cacttgagcc cagctgaggc 30180ctcaggccct tgagtggcct
gggggtggta gagggacttg gcccgtgaga tctggccatg 30240gctgctccat ttcgcagaag
ccactctcac gggctgccac cgaagcacgg gcttccccct 30300ttccgggaac ctgcctcctg
ccagcttcct ctcctgtgac atcacttctc ttgtgattcg 30360ccccaccatt tccactcact
cccagccagt ggggacaggc agaaccatgg gttccctagg 30420ccagctggag ccacccccga
cccggcctgg cctggctatg gggtggccct tgtgttctcc 30480ggagcgctag tggccagcac
aggcggcagc cacagacact tagtaggaac ttcagtgtgg 30540ctgacctgag ctgggctggc
cgtgcaggag agtgcaagct gcttcctcca tgagctcaca 30600gcctgacgtc agcaagtgct
tcaaagaagt catttcctat gcatgcctta aaccatgcca 30660caagggagat acgatcaccc
ctgttttaca aatgtgaaaa ctaaagcttg ctgagggtga 30720cccaaggtca cacagcttgt
tcctggggca aagccaggct gccaattcag ctctgcagcc 30780ccaggtctag agctctggca
atgccaggtg ctgctctcct cccctcttca gcacttgcct 30840tctgtgaccc tccttcccct
ttaatctgtc tgtaggtaag ggcacggggg tgtgcattca 30900tccacccacg cacccttctt
tccttcttcc ttcttgtgtt ctccccaccc ttccatccat 30960ccatccatcc atccatgcat
ctatccctcc aggcagtaca tcctgacagg gtccctgtct 31020acctcctgga tgaggcaaga
aggaaatatt ccccatatcc agagaggtga ggaagcaagg 31080caggccacac ggtgcaaaaa
tgtgccttca gacactcagt actttgtagc caagatgaac 31140tggcaggcat cgcagcagtc
aggcttctgg tgcttcttgg agagggctag aggggagcac 31200ttgttggacg ggaggcactg
gagagccaga gaatgtgcac cctcccccag agagttctgc 31260agcagaaaca gaaaactcag
atgggccaag gggccaggcc agggctagag tctatgatgg 31320ggggtagggt agtccagtgg
tgttttcggg gcttttcttt ctttctctct ttctctttct 31380ttctttcttt ctttctttct
ttctttcttt ctttcttttt ctttctttct ttctcttttt 31440ctccttctcc ttctccttct
tcctcttctt tctctttctt ctttcttctt ccttattctc 31500cttttccctt cttctccctt
cctcttctcc ttcttctcct tctcttcctt ctcctcctcc 31560tctttcttct tcttctcctt
ctcctcttcc tcctcctcct tcttcttctc ctcctccttc 31620tcctcattct ctttctcctt
tcttcctctt catcttttct tcttcttctc ctccgcctcc 31680tccttcctct tcctcttcct
cttcctcttc tccttctaaa ggagcaggaa tctggattat 31740tatgtgaaat tagctcgcga
ctcaatgaag caatttctac atggtgcata aacagattgt 31800ctttacgctg agtgactccg
cttgggccac tagatttcag ccgctgcctt gaattcctct 31860ctggcgcttt ctaagcagac
gcttgttcca gggattccac cacctctacc cgtgctccag 31920gcctccagag tgagaaccaa
acactgccca gacagacagg ttcccgggta cacggtgagg 31980ccctggggaa aggttgctgc
cagctacaga ctggttctag gactctccct ggaggttgag 32040agaacttcct gtagcaggca
caggtgtctt tgccttacag cccctgccca aggcttgggt 32100gacactacag gtcctcaacg
cagttgcttc tagggtgaaa cgttccactc ccctccaacc 32160ccggcttggg ttccttctct
gtctccccac aatctccctg tgactgtggg aagggacacc 32220ccaaggccca tgggatgcgc
ttgactcctc attccccgca ctagtccttc ccaacccctg 32280gctcccctgt ctacttcctg
aggtccttct gtgaggaaaa caatccatga taactttata 32340gacaaacaga caccaaaacc
tgcgtttcct gggttttaca agagcaagag ggccaggctt 32400gctcaggggc gccccctggc
ggtgcctcgt cccccaccgg ccctgctggg ctgggggaac 32460catggtcggg ggtggcggct
cccaacctgt tctgcctcag gacccagtca ctctccgcaa 32520aatgactgag taccctaaag
agtttttgct tatacaggtt atagatctat acttgcagca 32580ttagaaattg aaacaaaatt
ttaaaatgtt tattaattct tttaatataa ttataagccc 32640attacacatt tgaatataaa
taacattcta tgaaaattag ttgcatcctc caaaagtaaa 32700aacatttagt gacaagagtg
ctgtcatttt acatttttgt acatttcttt aacaactggc 32760ttcacagact acaggcggga
ccttcgaatc tgcctccgag ttcaatcagt cccgatgtca 32820cacatcagtc tctggaaaac
tcgcctgtca ccttatgaga gaatgagggc aaaaaaggca 32880aatgatatct gagtgttact
ataaacatga cttttggacc cccaggggtc ccctgactgt 32940gctttgagaa ctgctggttg
gtgtaagggt aagatcgtgg tcactgtggc cagatagact 33000taggggggtg ccagagtcta
ggccaggcgt gtggaggaca tggggcatgt agggggctca 33060gacctcagag ctcctgttgc
agtgggaatt cggagccctc ccctcaagca agctaggtga 33120gctcttctgg gtcctgaggc
aagattctgg ctccaccttg gctcctgcac tcttgagcct 33180catctgtaaa atgggatgag
agcaattcct ccctccctgg gtggaggtgc tgcttgaacc 33240tcagaatccc cgtgcaatga
ggccttgtga tgccatagcc aatgaggctc agccccagcc 33300acacacctgg agatgttaaa
acagcctcaa agctcatctt cagctgttcg gtggctaagg 33360aattgattaa cttattgaac
ggttaagtgc ttaccacatt ctagaagttc tggggaagtg 33420cctggccctt gggaatcatg
gccggctccg cagggtgttg gatttgctgt gggatgtccc 33480cactggcctt caggggcatt
cctgatgctc tctggatttc catctgcttt ctctgccagg 33540ggcattttca gctctccctg
cagattttca acctgcaccc tgagtgtgtt tcccccatct 33600gcaaagcact ctgatttgct
ctgtggaggg catttctatg agctgatgaa gctgtcccca 33660tctgttctgc aagggtgtcc
cacctgggat gaaaaggaac ccccggctgc tgtggaggga 33720gggtcccact gtcctggggg
agtggctgca cccactctgt gaagtcatgc cgctgcccac 33780ttgctctgtg gggtgaggtg
caccggactc tctgcaggag gaacccctgg gcccatgccc 33840tggagatggg agggctccta
cctgttctct ggtaggagag aaagactcag cctctctgga 33900gattccccca cctgctctgt
ttgaacaacg gtatcttctt ggtggtggta tggcaggggt 33960gcaggggcgg tgttgtccag
cagggatgtg agggtgctcc cacagctggg ggtggtccca 34020ccccgtgtgg ccatgcacag
agaaggtgct gcccatcagc actaagctac tggtcatggg 34080agaaggactg gtccttccct
caagcccaca gtgtcacagg gaggcaggag ggttggtgcc 34140taaatgggga gcactgctgc
cccctcgtcc cacaccaagc tcaaggcaga tgaccgtgca 34200catctgtgga cagtggggca
gtcaagggct tttgcctcaa ctgacacatt gaagcctttt 34260gtcagattca agatcaacag
aaataatttt tcctttcttt ctttctcttt ctttcttttc 34320ttttcttttt tctttccctc
cctctctccc tttctttctt tctctttctc tttcttcttt 34380ctttctttct tcctttcttt
ctctttcttt ctttcttttt ccctccctcc cttccttcct 34440tctttccctc cctccttcct
tcctaccttc tgtctctttc tttctttttt tgacgtactt 34500tcgttcttat tgcccaggct
ggagtgcaat ggcacgatct cggctcaccg caacctctgc 34560ttcctgggtt caagcgattc
tcctgcttca gcctcccgag tagctgggat tacaagcatg 34620tgccaccatg cctggctaat
tttgtatttt tagtagcaac ggggtttctc catgttggtc 34680agtctggtct cgaactcccg
acttcaggtg atccacccac ctcagcctcc caaagtgctg 34740ggattatagg tgtgagccac
tgcgcccagc caatttttct tgttttataa gggaggaagg 34800tgaggctcaa agaaggaccc
tgacttgcta gaacctcaca gttcacaggt gactgtgact 34860agaattgagt tttttatctg
gcaggcaatg gggagccatt gaagattttt gagcagggca 34920gtggcatagc caggctagtt
tctagaagat gactctgggg gtgcactcat ctaagggaga 34980aatcagggca gaggaggcac
agcgggcgtg cagctccccc tgcccctctg gctgcctgtc 35040cttgctctgt ctgtgcacgg
gacccaggag accagccagt gcagccctga gtcgtctctg 35100actcccccca ggctgtgtgg
cttgcgcatc ctgcagccct acgccgagag gatccccgtg 35160gtggccacgg ccgggatcac
catcaacttc acctcccaga tctccctcac cgggcccggt 35220gtgcgggtgc actatggctt
gtacaaccag tcggaccgtg agtatgggca gccgggggaa 35280ccccctgcag tgactcgctg
cctcttggcc atccctggaa ccaccaaggg ggctgtgggc 35340agctgcttat gaggctgaac
aaaaggagag agagagtgtg tgtgtgtgtg tatgtgcttg 35400cacaaattta tgcagctttg
tgtgcccacg tgtgcaaggc agccacaagg gtttgcagga 35460atacacactc atacatatcc
acgtgtgtgt tgtgtattct gtgtgtgtgt ctggatatgt 35520atgtctgctt ggactgtgta
cacaggtgcc caggaccacg tctgtgggtg cctgtccatg 35580cgcgtgtgag tgaacaggtg
catgcgtgtc tttgtgcgcc ttcgcggcta cgcatggcct 35640aatggcgccc tgcctgcctc
cacggtcccc tgtggttttg cagcctgccc tggagagttc 35700ctctgttctg tgaatggact
ctgtgtccct gcctgtgatg gggtcaagga ctgccccaac 35760ggcctggatg agagaaactg
cggtgagtaa cccgcccgcg catccctcct ctccctgccc 35820atcccttctc cttcctcacc
tttcctgctc tgagctgagt ggagacccca cttctacatg 35880cagcttccat tatgagcacc
caggaagtgg ggttctctca ctgtgccggg gtggcaaaat 35940gagacagacc agcaatgcag
cctccccgag accacctcgt gggacagtgg cagggagaag 36000tggggagcca ggtctcctga
cttccagctc agggccatca cccccagccc ctgtcccagc 36060cagccttcca ggaaggaaca
gaatgggtga gggagatgtc cccctcctct gccctgtcaa 36120aggtttaaat atgtgggaag
agggaagcga gatgttcatg gtggggggat gatcctgcca 36180cggtgctggg ggaggtacct
catattcaga aactgaacat ctggcttcaa gttctggctc 36240agccaagtga ccttggacaa
gtcacctcat ctgtttccac cagtgaaatg gggtatctca 36300cagggttgct gtgaaacttt
gggtgtaaaa tagcagagaa agaggccggg cgcagtggct 36360catgcctgta atcctagcac
tttgggaggc ggagtcgagc ggatcacctg aggtcaggag 36420ttcaagatca gcctggccaa
catggtgaaa ccccgtctct actaaaaata caataattag 36480ctgggcgtgg tagcaggagc
ctgtaattaa tctcagctac tcgggagtct gaggcaggag 36540aatcgcttgg acctgggagg
ttgcagtgag atcatgccat cgcactccag ccttcgtgac 36600aagagcgaga cataaaaata
aagtagcaga gaaagagatt tgtgattggt aacgtgcaat 36660acagcacacc ttctacaggc
atcgccaagc cccggctggc tcctctggct tcctcccacc 36720tgtcccctct ctgtgtcccc
acacagtttg cagagccaca ttccagtgca aagaggacag 36780cacatgcatc tcactgccca
aggtctgtga tgggcagcct gattgtctca acggcagcga 36840cgaagagcag tgccaggaag
gtagggcagg cctagccgag tgtctggagg gacaccaaag 36900gcagtctagg cctgctacat
gcttcagcaa aagtttctag cttctcctct caacacccac 36960caacccctct gtatttacat
ctgtatgtct gtccattcat ccatccatcc atccatccat 37020ccatccatcc atccatccat
ccatcttctg gtctccaatc accgtctgtc cattgattca 37080tacagctacc catttatcta
tgcatctact gacctgtgca accatcaatc tccctatcat 37140caaactgtca atctacccat
ttattggttt ggctgactac tggtctatat ggccactgtt 37200ccatccatcc atccatccat
ccatccatcc acccacccat ctacccaccc acccatccac 37260ccatccatca tccatccgtc
catcatccat ccatccatca tccgtctatc catccatcca 37320tccatccatc atccatccat
ccacccatcg tccatccgtc catcatccat ccatccatcc 37380atcatccatc catcatccat
ctatccatcc atcatccttc cacccatccg tcatccaccc 37440atcgatcatc catctgtcca
tcatccatcc atacatcatc catctatcca tccatccatt 37500catccatcca tcatccatgc
atcatccatc catcatccat ccatccatcc atcatccgtc 37560tatccatcca tccatcatcc
atccatccat ccatcatcca tccgtccatc atccatccat 37620ccatcatcca tctatccatc
catccatccg tccatcatcc atccatccat catccatcca 37680tcatccatcc gtccatcacc
catccatcca tcatccatcc atccatcatc catccatcca 37740tcatccatcc gtccatcatc
catccatcca tcgtccatca tccatccatc catccatcat 37800ccatccatcc atcatccatc
catccatcca tcatccatcc attcatccat catccatcca 37860ttcatccatc atccatctgt
ccatcgtcta tccatccatc atccatcatc catccatcca 37920tccatccatc catccatcat
ccatccatcc atcatccatc aatccatcaa tccatcatcc 37980atccatccat catccatcga
tccatcatcc atccatccat gcacccatcc atcatccatc 38040catccatcca tcatccatcc
attcatccat catccatcca tccatcatcc atccatccat 38100catccatcca tccatgcaac
catccatcat ccatccatcc atcatccatc catccatcat 38160ccatccatcc atccatcatc
catccatcca ttcatccatc atccatccat ccatcatccg 38220ttcatccatc atccatccat
tcacccatca tccatccatc catcatccat ccatcatccg 38280tccatccatc atctgtccat
catccatcca tccatcatcc atccaaccat ccatcatcca 38340tccatccacc atccatccat
tcatccgtca gccatccatc catccatgca cccatccatc 38400atccatccat ccatccatcc
atcatccatc catcatccat ccatcatcca cccatccatc 38460atccatccat ccatctaccc
atccatccac ccatccatcc acccatccac tgatctccct 38520agccccctgt ctgtccactg
gtccttatat ccacacgttt atccaacctt ctagctgtct 38580gtcagtctcc ctaatggacc
accactccac ccattggctt gtctgctcag tcttctgtct 38640gggtctattt atccatccat
ccatctaccc atccaactga ccaactgacc aacacttgca 38700ggctacccag cgataggcaa
ggtgcagtaa ggaagtgaga ataaaacagc agagatgcag 38760gccctgcctt ccaaggctca
tctgttagta ggaggatatg atgggtgact ctcctgcctt 38820gtaggaagat tggagggcag
ggaggaggtc agacatgaaa agcttcctgg aggaggtagg 38880tgtttggccc ttggtgagag
ctaaaactta aataggcagg aggaaaggag agaggcaaag 38940accaagtggt ggagtggaaa
gttctttaca gtgaagagca gggaggaaaa tgtggacaac 39000cgggcagggc cagagcctgg
gagattgcca ggctaggtgc ggaccctggt ctaaaagtgg 39060aggcacagtt ctgccttcaa
gttccacact ggagggggag gcatgatctt gtggtcagga 39120tctccagtct gagaatggag
acaccacttt gtgctcaata ggccagtctg agtggagggg 39180ctgtgggggg cggggggaca
tggcctgctt ttaggagacc ctaaaggaga ctcaggaaaa 39240gactctctag tcacctcctg
gctcttctgg ctccatcgtt cctgcacccc actttggaag 39300gtttccttgg ggctcagaga
cccaccttct gtgccctgcc cccatcccct ctgtcccagg 39360ggtgccatgt gggacattca
ccttccagtg tgaggaccgg agctgcgtga agaagcccaa 39420cccgcagtgt gatgggcggc
ccgactgcag ggacggctcg gatgaggagc actgtggtga 39480gccctgcctg gctgccgggg
ccctggagct tgggagggag ggggtgccca cagcaggaag 39540ctggagggaa atctcactgt
tgtcccctgg tctctctcta tctcatcctc tgcccccttg 39600cctgggtcct gatggtctct
ccccctccat cattctcctg ttctctgtct ctccatctct 39660ttcctttgcc cttcctctct
gtctgcttct ccccttcccc tcctcctctg tccaccccac 39720cacctgcccc catccccaga
ctgtggcctc cagggcccct ccagccgcat tgttggtgga 39780gctgtgtcct ccgagggtga
gtggccatgg caggccagcc tccaggttcg gggtcgacac 39840atctgtgggg gggccctcat
cgctgaccgc tgggtgataa cagctgccca ctgcttccag 39900gaggacaggt gagcgggagg
gtgtgggggc ctaggcagta agagacaagg gcagggaagg 39960cccggtggga ggtgcactgt
gtctgagctc tttgcagata gagggaaggg tggtggaccc 40020cccagacagg ctactgtgat
gtgagttcta gtcctggctc caccaggacc ttctgggtcc 40080ccggacacat tgttccacct
ctctgccatc tacttttggt atcttgcttt aagttgggcc 40140agtaattcat tcattcatct
cattcactca ttcagcaaca cttgtgctcc tactatgtgc 40200cagggctgtg ctagatgctg
gggattcagt aaaggacaga actgcccaac ctggtcataa 40260gctatgacac tccccgaggt
gtgacacgag gtagcaggtg gggctgggga gcccccaggg 40320gacatctcat caggcctcat
ggccatcttt cccatctgct tggtgggctg aaacctcccc 40380caatccaccc ccagacagat
ctgggctcca gatcccgccc ccaggccctg cacagggatc 40440cccttttgta tcctctctgg
gacgcagggc gctctgacca cctagctctc tttaacccca 40500tctcaggctc cccactgccc
tcaggtagag ggtagagacc cgaaggctgc ccatctgcca 40560cccaggcagc tgactgccgc
agtccaattc ctccacgctc aactcccacc cgctccccac 40620taggacccac cagcctcagg
gaattcagag cagcctgggt ctgtaaagca cacaggaaaa 40680aagaaatctg tgtcgggggc
ctggcactgt gctacatttt ttagatacac ggtcttattg 40740gattctctca agaacattcg
agtagaaaat gccattccca tttgcagatg aggtggcaga 40800ggcttagaga ggcacaccca
tgtctaggga gggatgaagc tggggcgtgg aacccaggca 40860ggccgagtgg gtgaaggctg
aacgctgtac caccagctag gcgaccttca gggagggaag 40920ggagggctgg gtgtggaggg
cactgtcccg ggcggggatc tggctatctt gagggtccct 40980ggatggggag aggcagcttc
ctcccacctc acctcacccc accccacccc accccacccc 41040accccagcat ggcctccacg
gtgctgtgga ccgtgttcct gggcaaggtg tggcagaact 41100cgcgctggcc tggagaggtg
tccttcaagg tgagccgcct gctcctgcac ccgtaccacg 41160aagaggacag ccatgactac
gacgtggcgc tgctgcagct cgaccacccg gtggtgcgct 41220cggccgccgt gcgccccgtc
tgcctgcccg cgcgctccca cttcttcgag cccggcctgc 41280actgctggat tacgggctgg
ggcgccttgc gcgagggcgg tgagcagcgg ggacttgcgg 41340cgggaggcgg agggagaccg
tgcggatctg cgccgtaaca cctggcctgg agaagggcgg 41400ggctgggggt cccggggctc
caccccatag gccctctagt gctgggattc aaattgggct 41460gaattttacg gtagaaaacc
accatttaat gcggcctgta ggcccctgcc cctcccctcc 41520tagctcttcc cttccttctg
gaagggcgtt atgtgtgggg caaaggggca ggtctgggac 41580gccactgccc acgtgcaagc
tccacctgct gttccttggg ctgcaagggt ggaaggctct 41640taattactag cactttccac
atccaggctg gattttaggg gaacttgact tcatataatc 41700cacccaacag ccctacgggc
ggatgctgtg gccctatttt atggatggag aaaccaaggc 41760tcagagacat gttgctgtaa
gtcacacagc cagagaggac tggagcaaag attagaaccc 41820agggctggct gcctccagag
cccctgctct tcctgctact gctctcagaa acagggtctc 41880tcccctttct acgttcactg
accagagtcc ctggcggcca ccgcacagtt ttggggacac 41940agacccagct ggcaaaccta
cagacatgcc ctgcagcgtt agtgttggtg gcttcaaaaa 42000tgtgtacagt gacttacaat
ctggaagcag gcggggccgc agagatattt taaggatggg 42060gaaactgagg ctcagaggaa
cagtgactta cccaagggga tggcagtggt catggcaaag 42120caaaggctgg ttcattcact
attccttcac tcattcagtc actcaatgac actttctgag 42180caccaagtac gtaccaggcg
tggggttagg ggaagggtac ataaggatga agagagaaca 42240ttctcggggg agacagacag
tggtaagagc tgacatggat ggggagatgc aggaacagtg 42300gagacacaga ggaggctcct
gcccagctag ggtcagggga ggcttccagg ggagggttgt 42360ttaagctgag gcctggaaga
tgagttggca acattcagac aaaggggaaa gacattcagg 42420tgaagacaca ggtgccaaga
caggaagatg tgagaacatc cgcagcctgc cagaggggct 42480gaggtggggg gcaggcgtgc
ctgggcgagg agcaaccaga atggcagaca gggccttggg 42540cgaggagcaa ccagaatggc
agacagggcc ttgccggcca gcataaggat cttaggccag 42600gagttctccc tcctacctgc
accttagaac catacgggga gtttcaagaa aaactgcgta 42660tcaaggctcc ccgggggact
gtgatatgca gccctcgtgg agaagcgcta gggcagactg 42720cagagttggg gcactgcaga
gttctaagga aaccatgaag ggatcagatg tgggcttcgg 42780agacatctgc aggtgctgta
acagagcagc gaggagccag ccagagccca gaggtgcctc 42840agcagacaga ggtgggggac
aagaagctgg aggaagacac tcatccacac gggctttttt 42900cttttttctt ttttttgttt
ttttgagaca gagtttcgct cttgttgccc aggctggagt 42960gcaatggcgc gatctcggct
cggatccccc tcctcccggg ttcaagcggt tctcctgcct 43020cagcctcctg agtaactggg
attacaggca tgtgccacca cacccagcta attttgtatt 43080tttagtacag acagggtttc
tccatgttgg tcaagctggt ctcaaactct tgacctcagg 43140tgttccgtcc gcctcagcct
cccaaagtgc tgggattaca ggcatgagcc accgtgcccg 43200gccctccaca tgggctttgg
tcgggggctg tcaccatgaa ccccacagag aaagagctag 43260aataaagtga cagggaggca
gaggggcagg tgcgacccta gcaggggtaa gggtgggcag 43320agcaggagag aagtaggctc
ctgagatgca aagggaataa tgttagggag aatagagaac 43380aggggctcca ggctcctgag
atctcacttc tgcccttgac cacggacagg ccccatcagc 43440aacgctctgc agaaagtgga
tgtgcagttg atcccacagg acctgtgcag cgaggtctat 43500cgctaccagg tgacgccacg
catgctgtgt gccggctacc gcaagggcaa gaaggatgcc 43560tgtcaggtga gtcccccggg
catgggaggg agagaggagg gagaaaggat gctgcccaca 43620tcaccagggt ctggcccttt
gctcacatca gcctgctgaa gcctcccatc ctcccagcaa 43680ggtggtgatg gccaccccta
ctttacagaa gaggagactg gggcttagaa aggttgagga 43740gcttgcccaa ggttgcagag
ccacagatca gaagagatgc tgtgatgggc aggtgttagg 43800ctcaaaccca gttctgctcc
ttgcccacca caaggcacta ggcccagggt cccacagtga 43860ggtggatgca tggaagaaga
aaggggtgtc agccacagaa gggaggcgga ggcagagtgg 43920gggcgtgggg acacagccac
agttccagga ggtcccaggc tggctggagg ccggggaggg 43980ctggcttggg ctctctccat
ttagcaggcg aggggaaagc agagctttaa gactgaacgt 44040gactctggca cccagtcaat
tcccaacagt caggacttaa tccctatggc tcttcacctg 44100gaaaaggggg tgcccttacc
ctgcttcagt cctttctcct ttcccccttt cagggtgact 44160caggtggtcc gctggtgtgc
aaggcactca gtggccgctg gttcctggcg gggctggtca 44220gctggggcct gggctgtggc
cggcctaact acttcggcgt ctacacccgc atcacaggtg 44280tgatcagctg gatccagcaa
gtggtgacct gaggaactgc ccccctgcaa agcagggccc 44340acctcctgga ctcagagagc
ccagggcaac tgccaagcag ggggacaagt attctggcgg 44400ggggtggggg agagagcagg
ccctgtggtg gcaggaggtg gcatcttgtc tcgtccctga 44460tgtctgctcc agtgatggca
ggaggatgga gaagtgccag cagctggggg tcaagacgtc 44520ccctgaggac ccaggcccac
acccagccct tctgcctccc aattctctct cctccgtccc 44580cttcctccac tgctgcctaa
tgcaaggcag tggctcagca gcaagaatgc tggttctaca 44640tcccgaggag tgtctgaggt
gcgccccact ctgtacagag gctgtttggg cagccttgcc 44700tccagagagc agattccagc
ttcggaagcc cctggtctaa cttgggatct gggaatggaa 44760ggtgctccca tcggagggga
ccctcagagc cctggagact gccaggtggg cctgctgcca 44820ctgtaagcca aaaggtgggg
aagtcctgac tccagggtcc ttgccccacc cctgcctgcc 44880acctgggccc tcacagccca
gaccctcact gggaggtgag ctcagctgcc ctttggaata 44940aagctgcctg atccaagccc
cgctgctgga gtttgaatgg gacccaggca ccagcctcat 45000gcccttgact ggagcagccc
ctgcttcctg ctcagcctgt ttgacaagtg tccagaaggc 45060caaggtgggc tcagtggcag
tgggcgtggc cactgagggc tggggcctgc agggcagctg 45120cccaggtccc agaagaaatg
ccaggaaggc aatcatttgg ggaccctcag gtcagaggga 45180tgtgaggagc aatcgtctcc
ttttggaacc ttaggaggaa actgaggctc agagaggcgg 45240ttaagacatc ctcatagtgg
cactgggggt taggagtgga ggtggcatag actcctgtct 45300cccagctccc tgtctgccaa
ggccccgtcc agtgcgacac tcccttcctt tgcattcttt 45360gagccactga ataaagcctt
gggctccaac catgtgccag cactatgctg gggccacagg 45420ggtgaaggac ctggctcctg
accccaggag cagtggggat gatccagtgg gaaggggccg 45480gaggggagcg tggactgggc
aagtcaaggc aagctgcctg gaggctgtga gacttgagct 45540ggggttcaga ggtggtccag
gtgggaatat ccgggaagga tattccaggc agggaagagc 45600acgtgcaaag gcacagtccc
ggaagaatga ggcacgctag gacccagcaa gccgagtgag 45660tgttagaaca gagctcgaga
ggatgactca agaattcaga ggggcgaact gaggcgggat 45720agcagagcct ggggttgagc
caaggatttg atcttgaaag ctctggggag ccacggtggg 45780ctctatagca taggagtgac
atgagaggat tcacattttg gaaccagcct tggcaccagt 45840gtgcagggag cggcaggcag
ggaggctggt taggaggcca ccgcaggatt ccaggatgga 45900gaggatgggc cgggactgag
cagcgccatg ggatggactg gaggatgatt ttagacccct 45960gggggcagtt gtgatggagg
cagggggctc gctggaggtg agggtggacg gtcaagtgtg 46020gacaactctt tctagacgcc
taactgggag cggaagggag agagggagct tcagaggggc 46080cccagactga agaggggttt
ttccaacatg ggcgctgctg ccaggtctgt gggtgaatga 46140ggcagaaggg gaaccaggga
cggggagcac ccacctgggt cctgccagga cgagccggag 46200cagctgggtg ggcagggagc
gtctccagag caggtgggca gaacacatgc agaatacctt 46260gggtgatctg gaatcaccct
gggccctacc tcagtcttca tcggaatcct ggagggcggg 46320ggacgtgtca tctgttctcc
taacaagcct cctggtgact cttttgcaag gatagttgga 46380ccctaaaaat gagtccagct
ttggagtgga gtgtcctcag gggaagtggc gaggccctcc 46440aggcttgagc tggcaagagg
gtgcccccgc cccagcctgt ggaaggcctg cgccttaggg 46500gctcactgcc cggcaggatt
tcctcgagca gcggggagga ctgaggagtt gaaggaactg 46560gccagggtgg gtggagggtc
tggggtctgg gctgggtcca gcagggtcag agaagggaga 46620gggcggggtg tttatatttc
ctaggatttt gggcagaggg gtggcagcaa tagggaggga 46680tggcggtggc ccaggtgtca
gagtagaagt ggagggggcg cgctgagagg tttaggatgt 46740ggcagaggca gcccagggct
ctccctagag ttctgttttc tggctcccgg ccaggtaggg 46800caggtgctct ggtatccggc
cccagggcaa aggatatagc cagttcccca agccctccct 46860gcaacacaca caggaaaatg
acaacagggc agcgtccctg ggcttttggg acaaagccgc 46920gttcctttgg accagactac
cacaccttta gtttagcccc gtccccaaaa gtggcccaga 46980gaaagagggc aacagccagg c
4700132691DNAHomo sapiens
3ggacaaacag aggctcctga ggcctgtgtg caggcccggc acctatctgc cactcccaaa
60ggatgcccgt ggccgaggcc ccccaggtgg ctggcgggca gggggacgga ggtgatggcg
120aggaagcgga gccagagggg atgttcaagg cctgtgagga ctccaagaga aaagcccggg
180gctacctccg cctggtgccc ctgtttgtgc tgctggccct gctcgtgctg gcttcggcgg
240gggtgctact ctggtatttc ctagggtaca aggcggaggt gatggtcagc caggtgtact
300caggcagtct gcgtgtactc aatcgccact tctcccagga tcttacccgc cgggaatcta
360gtgccttccg cagtgaaacc gccaaagccc agaagatgct caaggagctc atcaccagca
420cccgcctggg aacttactac aactccagct ccgtctattc ctttggggag ggacccctca
480cctgcttctt ctggttcatt ctccaaatcc ccgagcaccg ccggctgatg ctgagccccg
540aggtggtgca ggcactgctg gtggaggagc tgctgtccac agtcaacagc tcggctgccg
600tcccctacag ggccgagtac gaagtggacc ccgagggcct agtgatcctg gaagccagtg
660tgaaagacat agctgcattg aattccacgc tgggttgtta ccgctacagc tacgtgggcc
720agggccaggt cctccggctg aaggggcctg accacctggc ctccagctgc ctgtggcacc
780tgcagggccc caaggacctc atgctcaaac tccggctgga gtggacgctg gcagagtgcc
840gggaccgact ggccatgtat gacgtggccg ggcccctgga gaagaggctc atcacctcgg
900tgtacggctg cagccgccag gagcccgtgg tggaggttct ggcgtcgggg gccatcatgg
960cggtcgtctg gaagaagggc ctgcacagct actacgaccc cttcgtgctc tccgtgcagc
1020cggtggtctt ccaggcctgt gaagtgaacc tgacgctgga caacaggctc gactcccagg
1080gcgtcctcag caccccgtac ttccccagct actactcgcc ccaaacccac tgctcctggc
1140acctcacggt gccctctctg gactacggct tggccctctg gtttgatgcc tatgcactga
1200ggaggcagaa gtatgatttg ccgtgcaccc agggccagtg gacgatccag aacaggaggc
1260tgtgtggctt gcgcatcctg cagccctacg ccgagaggat ccccgtggtg gccacggccg
1320ggatcaccat caacttcacc tcccagatct ccctcaccgg gcccggtgtg cgggtgcact
1380atggcttgta caaccagtcg gacccctgcc ctggagagtt cctctgttct gtgaatggac
1440tctgtgtccc tgcctgtgat ggggtcaagg actgccccaa cggcctggat gagagaaact
1500gcgtttgcag agccacattc cagtgcaaag aggacagcac atgcatctca ctgcccaagg
1560tctgtgatgg gcagcctgat tgtctcaacg gcagcgacga agagcagtgc caggaagggg
1620tgccatgtgg gacattcacc ttccagtgtg aggaccggag ctgcgtgaag aagcccaacc
1680cgcagtgtga tgggcggccc gactgcaggg acggctcgga tgaggagcac tgtgactgtg
1740gcctccaggg cccctccagc cgcattgttg gtggagctgt gtcctccgag ggtgagtggc
1800catggcaggc cagcctccag gttcggggtc gacacatctg tgggggggcc ctcatcgctg
1860accgctgggt gataacagct gcccactgct tccaggagga cagcatggcc tccacggtgc
1920tgtggaccgt gttcctgggc aaggtgtggc agaactcgcg ctggcctgga gaggtgtcct
1980tcaaggtgag ccgcctgctc ctgcacccgt accacgaaga ggacagccat gactacgacg
2040tggcgctgct gcagctcgac cacccggtgg tgcgctcggc cgccgtgcgc cccgtctgcc
2100tgcccgcgcg ctcccacttc ttcgagcccg gcctgcactg ctggattacg ggctggggcg
2160ccttgcgcga gggcgcccta cgggcggatg ctgtggccct attttatgga tggagaaacc
2220aaggctcaga gacatgttgc tgccccatca gcaacgctct gcagaaagtg gatgtgcagt
2280tgatcccaca ggacctgtgc agcgaggtct atcgctacca ggtgacgcca cgcatgctgt
2340gtgccggcta ccgcaagggc aagaaggatg cctgtcaggg tgactcaggt ggtccgctgg
2400tgtgcaaggc actcagtggc cgctggttcc tggcggggct ggtcagctgg ggcctgggct
2460gtggccggcc taactacttc ggcgtctaca cccgcatcac aggtgtgatc agctggatcc
2520agcaagtggt gacctgagga actgcccccc tgcaaagcag ggcccacctc ctggactcag
2580agagcccagg gcaactgcca agcaggggga caagtattct ggcggggggt gggggagaga
2640gcaggccctg tggtggcagg aggtggcatc ttgtctcgtc cctgatgtct g
269141732DNAHomo sapiens 4gttcttgagc cagacccagt ccagctctgg tgcctgccct
ctggtgcgag ctgacctgag 60atgcacttcc ctcctctgtg agctgtctcg gcacccactt
gcagtcactg ccgcctgatg 120ttgttactct tccactccaa aaggatgccc gtggccgagg
ccccccaggt ggctggcggg 180cagggggacg gaggtgatgg cgaggaagcg gagccagagg
ggatgttcaa ggcctgtgag 240gactccaaga gaaaagcccg gggctacctc cgcctggtgc
ccctgtttgt gctgctggcc 300ctgctcgtgc tggcttcggc gggggtgcta ctctggtatt
tcctagggta caaggcggag 360gtgatggtca gccaggtgta ctcaggcagt ctgcgtgtac
tcaatcgcca cttctcccag 420gatcttaccc gccgggaatc tagtgccttc cgcagtgaaa
ccgccaaagc ccagaagatg 480ctcaaggagc tcatcaccag cacccgcctg ggaacttact
acaactccag ctccgtctat 540tcctttgggg agggacccct cacctgcttc ttctggttca
ttctccaaat ccccgagcac 600cgccggctga tgctgagccc cgaggtggtg caggcactgc
tggtggagga gctgctgtcc 660acagtcaaca gctcggctgc cgtcccctac agggccgagt
acgaagtgga ccccgagggc 720ctagtgatcc tggaagccag tgtgaaagac atagctgcat
tgaattccac gctgggttgt 780taccgctaca gctacgtggg ccagggccag gtcctccggc
tgaaggggcc tgaccacctg 840gcctccagct gcctgtggca cctgcagggc cccaaggacc
tcatgctcaa actccggctg 900gagtggacgc tggcagagtg ccgggaccga ctggccatgt
atgacgtggc cgggcccctg 960gagaagaggc tcatcacctc ggtgtacggc tgcagccgcc
aggagcccgt ggtggaggtt 1020ctggcgtcgg gggccatcat ggcggtcgtc tggaagaagg
gcctgcacag ctactacgac 1080cccttcgtgc tctccgtgca gccggtggtc ttccaggcct
gtgaagtgaa cctgacgctg 1140gacaacaggc tcgactccca gggcgtcctc agcaccccgt
acttccccag ctactactcg 1200ccccaaaccc actgctcctg gcacctcacg gtgccctctc
tggactacgg cttggccctc 1260tggtttgatg cctatgcact gaggaggcag aagtatgatt
tgccgtgcac ccagggccag 1320tggacgatcc agaacaggag gtaccacttc ctctcctccc
tctggcttcc tttcctccct 1380ccccctccct ctcttccctc ctcaacagtg accccctcat
tggaagccca agtccccaat 1440ctcagagggg cagcaagggg agcgagcaga ggctggggct
ggtgtcaggc ctgctgccct 1500tgaccttgtc ctcgtcccaa cctccgccct ggccccggct
tcccctctgg ctaccccaga 1560ggtctcagac acgtttggtc atcagacacc ttggatgttt
attctaatta cagcaaaatt 1620gtctcatctt cttgggtgct gtaaccccct ctggcaccct
caatccttca ataaaatgtt 1680tccagagcca aaggaaaaaa aaaaaaaaaa aaaaaaaaaa
aaaaaaaaaa aa 173253143DNAHomo sapiens 5gagccaccta ccctgctccg
aggccaggcc tgcagggcct catcggccag agggtgatca 60gtgagcagaa ggatgcccgt
ggccgaggcc ccccaggtgg ctggcgggca gggggacgga 120ggtgatggcg aggaagcgga
gccagagggg atgttcaagg cctgtgagga ctccaagaga 180aaagcccggg gctacctccg
cctggtgccc ctgtttgtgc tgctggccct gctcgtgctg 240gcttcggcgg gggtgctact
ctggtatttc ctagggtaca aggcggaggt gatggtcagc 300caggtgtact caggcagtct
gcgtgtactc aatcgccact tctcccagga tcttacccgc 360cgggaatcta gtgccttccg
cagtgaaacc gccaaagccc agaagatgct caaggagctc 420atcaccagca cccgcctggg
aacttactac aactccagct ccgtctattc ctttggggag 480ggacccctca cctgcttctt
ctggttcatt ctccaaatcc ccgagcaccg ccggctgatg 540ctgagccccg aggtggtgca
ggcactgctg gtggaggagc tgctgtccac agtcaacagc 600tcggctgccg tcccctacag
ggccgagtac gaagtggacc ccgagggcct agtgatcctg 660gaagccagtg tgaaagacat
agctgcattg aattccacgc tgggttgtta ccgctacagc 720tacgtgggcc agggccaggt
cctccggctg aaggggcctg accacctggc ctccagctgc 780ctgtggcacc tgcagggccc
caaggacctc atgctcaaac tccggctgga gtggacgctg 840gcagagtgcc gggaccgact
ggccatgtat gacgtggccg ggcccctgga gaagaggctc 900atcacctcgg tgtacggctg
cagccgccag gagcccgtgg tggaggttct ggcgtcgggg 960gccatcatgg cggtcgtctg
gaagaagggc ctgcacagct actacgaccc cttcgtgctc 1020tccgtgcagc cggtggtctt
ccaggcctgt gaagtgaacc tgacgctgga caacaggctc 1080gactcccagg gcgtcctcag
caccccgtac ttccccagct actactcgcc ccaaacccac 1140tgctcctggc acctcacggt
gccctctctg gactacggct tggccctctg gtttgatgcc 1200tatgcactga ggaggcagaa
gtatgatttg ccgtgcaccc agggccagtg gacgatccag 1260aacaggaggc tgtgtggctt
gcgcatcctg cagccctacg ccgagaggat ccccgtggtg 1320gccacggccg ggatcaccat
caacttcacc tcccagatct ccctcaccgg gcccggtgtg 1380cgggtgcact atggcttgta
caaccagtcg gacccctgcc ctggagagtt cctctgttct 1440gtgaatggac tctgtgtccc
tgcctgtgat ggggtcaagg actgccccaa cggcctggat 1500gagagaaact gcgtttgcag
agccacattc cagtgcaaag aggacagcac atgcatctca 1560ctgcccaagg tctgtgatgg
gcagcctgat tgtctcaacg gcagcgatga agagcagtgc 1620caggaagggg tgccatgtgg
gacattcacc ttccagtgtg aggaccggag ctgcgtgaag 1680aagcccaacc cgcagtgtga
tgggcggccc gactgcaggg acggctcgga tgaggagcac 1740tgtgactgtg gcctccaggg
cccctccagc cgcattgttg gtggagctgt gtcctccgag 1800ggtgagtggc catggcaggc
cagcctccag gttcggggtc gacacatctg tgggggggcc 1860ctcatcgctg accgctgggt
gataacagct gcccactgct tccaggagga cagcatggcc 1920tccacggtgc tgtggaccgt
gttcctgggc aaggtgtggc agaactcgcg ctggcctgga 1980gaggtgtcct tcaaggtgag
ccgcctgctc ctgcacccgt accacgaaga ggacagccat 2040gactacgacg tggcgctgct
gcagctcgac cacccggtgg tgcgctcggc cgccgtgcgc 2100cccgtctgcc tgcccgcgcg
ctcccacttc ttcgagcccg gcctgcactg ctggattacg 2160ggctggggcg ccttgcgcga
gggcggcccc atcagcaacg ctctgcagaa agtggatgtg 2220cagttgatcc cacaggacct
gtgcagcgag gcctatcgct accaggtgac gccacgcatg 2280ctgtgtgccg gctaccgcaa
gggcaagaag gatgcctgtc agggtgactc aggtggtccg 2340ctggtgtgca aggcactcag
tggccgctgg ttcctggcgg ggctggtcag ctggggcctg 2400ggctgtggcc ggcctaacta
cttcggcgtc tacacccgca tcacaggtgt gatcagctgg 2460atccagcaag tggtgacctg
aggaactgcc cccctgcaaa gcagggccca cctcctggac 2520tcagagagcc cagggcaact
gccaagcagg gggacaagta ttctggcggg gggtggggga 2580gagagcaggc cctgtggtgg
caggaggtgg catcttgtct cgtccctgat gtctgctcca 2640gtgatggcag gaggatggag
aagtgccagc agctgggggt caagacgtcc cctgaggacc 2700caggcccaca cccagccctt
ctgcctccca attctctctc ctccgtcccc ttcctccact 2760gctgcctaat gcaaggcagt
ggctcagcag caagaatgct ggttctacat cccgaggagt 2820gtctgaggtg cgccccactc
tgtacagagg ctgtttgggc agccttgcct ccagagagca 2880gattccagct tcggaagccc
ctggtctaac ttgggatctg ggaatggaag gtgctcccat 2940cggaggggac cctcagagcc
ctggagactg ccaggtgggc ctgctgccac tgtaagccaa 3000aaggtgggga agtcctgact
ccagggtcct tgccccaccc ctgcctgcca cctgggccct 3060cacagcccag accctcactg
ggaggtgagc tcagctgccc tttggaataa agctgcctga 3120tcaaaaaaaa aaaaaaaaaa
aaa 31436528DNAHomo
sapiensmisc_feature(168)..(168)n is a, c, g, or
tmisc_feature(433)..(433)n is a, c, g, or t 6aaaaaggcag ggaagtcctg
cttccgtgcc ccaccggtgc tcagcagagg ctcccttgca 60aatgcgaggc tgtttccaac
tttggtctgt ttccctggca ggatgcccgt ggccgaggcc 120ccccaggtgg ctggcgggca
gggggacgga ggtgatggcg aggaagcngg agccggaggg 180gatgttcaag gcctgtgagg
actccaagag aaaagcccgg ggctacctcc gcctggtgcc 240cctgtttgtg ctgctggccc
tgctcgtgct ggcttcggcg ggggtgctac tctggtattt 300cctagggtac aaggcggagg
tgatggtcag ccaggtgtac tcaggcagtc tgcgtgtact 360caatcgccac ttctcccagg
atcttacccg ccgggaatct agtgccttcc gcagtgaaac 420cgccaaagcc canaagatgc
tcaaggagct catcaccagc acccgcctgg gaacttacta 480caactccagc tccgtctatt
cctttgggga gggacccctc acctgctt 528720DNAArtificial
sequenceSynthetic oligonucleotide 7ccatcacctc cgtccccctg
20820DNAArtificial sequenceSynthetic
oligonucleotide 8tccgcttcct cgccatcacc
20920DNAArtificial sequenceSynthetic oligonucleotide
9ttttctcttg gagtcctcac
201020DNAArtificial sequenceSynthetic oligonucleotide 10gcttttctct
tggagtcctc
201120DNAArtificial sequenceSynthetic oligonucleotide 11ccgggctttt
ctcttggagt
201220DNAArtificial sequenceSynthetic oligonucleotide 12ggctttggcg
gtttcactgc
201320DNAArtificial sequenceSynthetic oligonucleotide 13gagcatcttc
tgggctttgg
201420DNAArtificial sequenceSynthetic oligonucleotide 14ccttgagcat
cttctgggct
201520DNAArtificial sequenceSynthetic oligonucleotide 15agtgcctgca
ccacctcggg
201620DNAArtificial sequenceSynthetic oligonucleotide 16cagcagtgcc
tgcaccacct
201720DNAArtificial sequenceSynthetic oligonucleotide 17tcctccacca
gcagtgcctg
201820DNAArtificial sequenceSynthetic oligonucleotide 18agctcctcca
ccagcagtgc
201920DNAArtificial sequenceSynthetic oligonucleotide 19cagcagctcc
tccaccagca
202020DNAArtificial sequenceSynthetic oligonucleotide 20gctgtgcagg
cccttcttcc
202120DNAArtificial sequenceSynthetic oligonucleotide 21gtagtagctg
tgcaggccct
202220DNAArtificial sequenceSynthetic oligonucleotide 22acggcaaatc
atacttctgc
202320DNAArtificial sequenceSynthetic oligonucleotide 23gcacggcaaa
tcatacttct
202420DNAArtificial sequenceSynthetic oligonucleotide 24ccctgggtgc
acggcaaatc
202520DNAArtificial sequenceSynthetic oligonucleotide 25caaacgcagt
ttctctcatc
202620DNAArtificial sequenceSynthetic oligonucleotide 26tgcaaacgca
gtttctctca
202720DNAArtificial sequenceSynthetic oligonucleotide 27gatcacacct
gtgatgcggg
202820DNAArtificial sequenceSynthetic oligonucleotide 28ctcctgccac
cacagggcct
202920DNAArtificial sequenceSynthetic oligonucleotide 29acctcctgcc
accacagggc
203020DNAArtificial sequenceSynthetic oligonucleotide 30tgccatcact
ggagcagaca
203120DNAArtificial sequenceSynthetic oligonucleotide 31atcctcctgc
catcactgga
203220DNAArtificial sequenceSynthetic oligonucleotide 32tccattccca
gatcccaagt
203320DNAArtificial sequenceSynthetic oligonucleotide 33cttccattcc
cagatcccaa
203420DNAArtificial sequenceSynthetic oligonucleotide 34accttccatt
cccagatccc
203520DNAArtificial sequenceSynthetic oligonucleotide 35caaagggcag
ctgagctcac
203620DNAArtificial sequenceSynthetic oligonucleotide 36ctttattcca
aagggcagct
203720DNAArtificial sequenceSynthetic oligonucleotide 37agctttattc
caaagggcag
203820DNAArtificial sequenceSynthetic oligonucleotide 38aggcagcttt
attccaaagg
203920DNAArtificial sequenceSynthetic oligonucleotide 39gatcaggcag
ctttattcca
204020DNAArtificial sequenceSynthetic oligonucleotide 40aggagcggcc
accgtcctgt
204120DNAArtificial sequenceSynthetic oligonucleotide 41ggcaggagcg
gccaccgtcc
204220DNAArtificial sequenceSynthetic oligonucleotide 42tccccctgag
gctctcagga
204320DNAArtificial sequenceSynthetic oligonucleotide 43taagtccccc
tgaggctctc
204420DNAArtificial sequenceSynthetic oligonucleotide 44aagactgttc
cttctccttt
204520DNAArtificial sequenceSynthetic oligonucleotide 45cagcttgtgc
ctgcccagag
204620DNAArtificial sequenceSynthetic oligonucleotide 46agtctatctg
gccacagtga
204720DNAArtificial sequenceSynthetic oligonucleotide 47ggtccttctt
tgagcctcac
204820DNAArtificial sequenceSynthetic oligonucleotide 48cctcaggtca
ccacttgctg
204920DNAArtificial sequenceSynthetic oligonucleotide 49gccacctcct
gccaccacag
205020DNAArtificial sequenceSynthetic oligonucleotide 50atgccacctc
ctgccaccac
205120DNAArtificial sequenceSynthetic oligonucleotide 51ctccatcctc
ctgccatcac
205220DNAArtificial sequenceSynthetic oligonucleotide 52gcagctgagc
tcacctccca
205320DNAArtificial sequenceSynthetic oligonucleotide 53ggcagctgag
ctcacctccc
205420DNAArtificial sequenceSynthetic oligonucleotide 54ggcagcttta
ttccaaaggg
205520DNAArtificial sequenceSynthetic oligonucleotide 55caggcagctt
tattccaaag
205620DNAArtificial sequenceSynthetic oligonucleotide 56atcaggcagc
tttattccaa
205720DNAArtificial sequenceSynthetic oligonucleotide 57ccactggccc
tgggtgcacg
205820DNAArtificial sequenceSynthetic oligonucleotide 58tccactggcc
ctgggtgcac
205916DNAArtificial sequenceSynthetic oligonucleotide 59cttttggctt acagtg
166016DNAArtificial
sequenceSynthetic oligonucleotide 60gctgagctca cctccc
166116DNAArtificial sequenceSynthetic
oligonucleotide 61tattccaaag ggcagc
166216DNAArtificial sequenceSynthetic oligonucleotide
62ctttattcca aagggc
166316DNAArtificial sequenceSynthetic oligonucleotide 63agctttattc caaagg
166416DNAArtificial
sequenceSynthetic oligonucleotide 64tcaggcagct ttattc
166516DNAArtificial sequenceSynthetic
oligonucleotide 65atcaggcagc tttatt
166616DNAArtificial sequenceSynthetic oligonucleotide
66gatcaggcag ctttat
166716DNAArtificial sequenceSynthetic oligonucleotide 67attccaaagg gcagct
166816DNAArtificial
sequenceSynthetic oligonucleotide 68cttacagtgg cagcag
166916DNAArtificial sequenceSynthetic
oligonucleotide 69tggcttacag tggcag
167016DNAArtificial sequenceSynthetic oligonucleotide
70ttggcttaca gtggca
167116DNAArtificial sequenceSynthetic oligonucleotide 71gctttattcc aaaggg
167216DNAArtificial
sequenceSynthetic oligonucleotide 72caggcagctt tattcc
167316DNAArtificial sequenceSynthetic
oligonucleotide 73tttgatcagg cagctt
167416DNAArtificial sequenceSynthetic oligonucleotide
74ttttgatcag gcagct
167516DNAArtificial sequenceSynthetic oligonucleotide 75tttttgatca ggcagc
167616DNAArtificial
sequenceSynthetic oligonucleotide 76acatcaggga cgagac
167716DNAArtificial sequenceSynthetic
oligonucleotide 77cagctttatt ccaaag
167816DNAArtificial sequenceSynthetic oligonucleotide
78gcagctttat tccaaa
167916DNAArtificial sequenceSynthetic oligonucleotide 79aggcagcttt attcca
168016DNAArtificial
sequenceSynthetic oligonucleotide 80tgatcaggca gcttta
168116DNAArtificial sequenceSynthetic
oligonucleotide 81ttgatcaggc agcttt
168216DNAArtificial sequenceSynthetic oligonucleotide
82ggcagcttta ttccaa
168316DNAArtificial sequenceSynthetic oligonucleotide 83ttattccaaa gggcag
168416DNAArtificial
sequenceSynthetic oligonucleotide 84tttattccaa agggca
168516DNAArtificial sequenceSynthetic
oligonucleotide 85ggcagctgag ctcacc
168619DNAArtificial sequencePrimer 86tgataacagc tgcccactg
198720DNAArtificial
sequencePrimer 87tcaccttgaa ggacacctct
208821DNAArtificial sequenceProbe 88agttctgcca caccttgccc a
218915DNAArtificial
sequencePrimer 89tcgccgcttg ctgca
159017DNAArtificial sequencePrimer 90atcggccgtg atgtcga
179123DNAArtificial
sequenceProbe 91ccatggtcaa ccccaccgtg ttc
239221DNAArtificial sequencePrimer 92caaagcccag aagatgctca a
219322DNAArtificial
sequencePrimer 93ggaatagacg gagctggagt tg
229422DNAArtificial sequenceProbe 94accagcaccc gcctgggaac tt
229542001DNAMacaca
mulattamisc_feature(26913)..(27448)n is a, c, g, or
tmisc_feature(31066)..(31221)n is a, c, g, or t 95acttggcctt ggaaacctct
tgtgcgtctt ccctatgcag cttttctcag ttcagactgg 60ctcaggagct gcgggtgacc
agcggctacc gtcatggaca gcacagggct acggaaccag 120gtaggaattc atgctgcgta
tggtggtaat catgcctgta atcctagcat tttggaaggc 180cgaggtgggt gggatcacct
gaggtcatga gttcgagacc aggctggcca acatggtgaa 240accccgtctc tactaaaaat
ataaaattta gccaggcatg gtggtgggca cctgtaatcc 300cagttactca ggagactgag
gcaagagaat tgcttgaacc tggggaagtg gaggttgcag 360tgagctgaaa tcgtaccact
gcactctagc ctggttaaca gagtgagact ctatccccca 420cccccgcaaa aaaaaaaaaa
aaaaaaaaag aaaaaaagga acaaggtagg aattcaaata 480aacagaaaat agcatcaaac
cccacccctg cctctccttt ctcctctcca gtccccagag 540tacatgggcc cagcctcctt
tactctctct caggcctgta gctcctttag tttctcccgt 600ccaggtaagc acctggcctt
acctgtgtga gcccctgcac tcacctgcac tgggctctgc 660atagtcccca gtccttgacc
cccccccacc tcatgctctt ggggaccagg ggctgtaacc 720aggcaggcat gtcaccaggc
aacaggcctt gggggagagc tcagatctcc cgcacctgcc 780tgccagcctc tggggtgccc
atgggcgggg ggatgggaca ggccggccct gccttctcct 840gcctcctgcc tgtttacctg
tactcagtca cagtgctgtc ctgggcccag caggaggagc 900cccatggagc ctggggccac
aggccacagg ggacaagggc cagacaccct ggccatggct 960ctaggccatt gatccaggcc
gggctggcac ggtgggggta gggaggcctt ggcctggaca 1020aacaaaggct tctgaggcct
gcgtgcaggc ccagcaccta tccgccactc ccaaaggtaa 1080gcgggggcct ccagaacagg
ggaccaggat ctataaatga cttagtgaca gtgtccaccc 1140taagagctgg gcctggctcc
ctggggcctg agtcacctac cctgctccaa ggccaggcct 1200gcagggcctc atcggccaga
gggtgatcag tgagcagaag gtgaggggcc cacagagctg 1260gggaggggag ggaccatgca
gggtgacacc aggtgtgtgg acaggcacag catcagtgct 1320gggtggttgg tggcctggga
ttcaggcggc agggacagga ggaaggcaga ggccacccta 1380cgcctgcctc gcaggactgg
acgtgctgcc ccctccatac ccggtacccc acctgggcct 1440tctggtgtag gagacaggcc
cagagcccca cattgcacct gtgtactgac ttaagcacgg 1500gaccctgggc tcgaaggctc
agagttggcg tgtgtgtgtg tgtgtgtgtt cgtgtgtgtg 1560ttcgtgtgtg tgggggaagg
gcatgcatct gtgaattttt gtgtcatgaa tatccctcgc 1620gtgtctccac ctgtgtacat
ctgtgggtct gtgaatgtgt ttatatgtgt ggaagggagc 1680cccgcccagt ctcccacact
cgcaggtctc tagggcctaa tgacttcact gaaagatgca 1740cctacaaccc tagcccagag
tccccgctct gctctgctct gccctggcta agggacctcg 1800ggtaagtcat gttactgctc
tctacctcag tttccccagc cattaaacag agttagcaaa 1860gcacacaccc caggctgttg
gaggctgcag tggagttcgc agcgccgccc agcgcagggc 1920tggcacatgg taggagttca
cacgcagtgg ttgaatacag atctgcattg ccggggagtg 1980gcggccccgc cccaaggagc
tcagcctcca gcgggcagac tccagacccg ccaatggcca 2040gaagggcagg agggagtgaa
gagcaggtgc cagggtgggg tccaggtgct cagagctgcg 2100ggactgcttc aggcccctgt
ggcaattgca gcacagtccc cgcttccagg agctcaatgt 2160gaggggcaga gagggtgccc
ataggtgaac cgcacatcgc gaggcacagc tgctccttct 2220agggcactct gggagagctg
caaagaggtg aggtctgagt ggaggtgaca gaggctgcat 2280aagagctggc caggctggga
ggtgggggtc caggcagaag gaagagtgtg gggatgcctg 2340gccgtgaaca agcactgaca
gggctcaagg tccaggaggg ctcttggtgc tggctggctg 2400ctcttaatcc gtaaatgttt
gccaccatcc cattgttaaa atttcttacc aagggaagga 2460agtccagtgt ccccggggtg
tgacggggag aagagagggt gagaaaaaag gaggcaggag 2520aaggtggcca ggccacatat
gcacacagca ccttggagtt ccgtggggag gaaggagctg 2580ggaccttgtc attcatttgt
tcaacaatta ctgagtgtcc gctgagtacc agactctgct 2640ctcacgcagc ttagacaggg
aggagacaga taaacaacgt atttgcatat caggcaattt 2700aggcctcagt cattgctata
aagaaaaaag caggagagac aggggagtgc ccagggaagg 2760cctctctgga aaggtgacat
gtgacacctt ggaggaggta aaggagggag ctatgaggca 2820agcagaaagg aaagcatccc
aggctcagca aggagcaaac tcccattcag cgaagaggac 2880agaaaaccta gcccctgggc
cttgtgggac tgagttctag ttggatggaa gccgtgggag 2940gctcgtggac agggcacata
gtgacaacac gcagtgtttt ttttgtattt ttagtagaga 3000cggggtttca ccttgttagc
caggatggtc tctatctcct gacctggtga tccgcccgcc 3060tcggcctccc aaagtgctgg
gattacaggc ttgagccacc gcgccccggc ctgggtggga 3120agttatgatg agcctggggg
agttaatttc ctactaccac catttggact atggcttggg 3180tttttacaga gggtttcctg
aaaacgaacc cctctgtgct gctcaagtcc tcccagatgg 3240atgcgagggg tattgagagg
gaggcaaaat ctgcatagag aaggaggcct ggcttggagg 3300atgagagggg aggggaggcc
cacgaagcac ttcaccctga gctgcccctc ttcggggctc 3360ctctaatgga cccatgacct
tctctgagcc tcagtttccc tctctttaca ctgattatct 3420gagaggtagt agggcaccag
ggatactgtg aacatttgag gaagtgggca gggctctccc 3480acccattgcc cattgccgga
catttatcat ttaccattcc ctggccttgg ccccataaaa 3540gccagtaggg cccatcccac
atgtgggaat atcctagctt agggtgtgga ggggggtgcc 3600atgcctaatg agggtcccct
gcagtccctc ccttccttgt atctgatggg gaccgctcaa 3660cagagtcact gtggctggac
accaaagacc cttagctggg aaggatgcca aggggagctg 3720gagggagccg ggaagctggg
agaagggcca ggacccttca tatccacctg ggaggatttt 3780gagcgtcact aaagagccgc
atttttggaa acccactttg taaaatccta agacacagcc 3840caaagggagc ccccgcctgc
atctggggtg cattttattt tttttaacgg tttgtttgtt 3900tgttttttat cagagtcttg
ctctgtcacc caggctggag tataatggca tgatcttggc 3960tcactgcaac ctcccttgcc
caggttcaag tgattctcct gcctcagcct cccgagtagc 4020tgggattaca ggcgcccacc
accatgcccg gctaattttt gtatttttca tagtgacagg 4080gtttcaccat attggccagg
ctgatctcga actcctgacc tcaggtgatc cacccacctg 4140aggtgttggg attacaggcg
tgagccaccg cgcccggccc tggggtgcat tttaaagcta 4200ctcagtattt gtggatacag
taagagaaga tgagcttccc agtagtgtgg agcccttgct 4260ctcctggtgg gcgggtcaaa
ggctttctct gtactgtcgg gaaacctgcc tgaaaggcca 4320catacattgg gatatttgct
tcaaagcctc tcaaaataga gttggaaccc tggaacatgg 4380agaggggtga cattcagttg
ctatttaatc atgatttgtt aatcaacagc tcagttatgg 4440gaggcatctt agattagtgg
aaaaagcagg gagtcagaca tccagactca acctccgctt 4500tcctgctgtg tgaccttggg
caagtggctt agcctctctg ggcttcatgg tttttttttt 4560tttaatctgt aaaatgcatc
tgagagtgaa tgccaggtat tcaactcaca atggaaaaat 4620gcagctagga aaagccctag
actgcgttat tgctagaaca ctctgggtct cagtttcctc 4680atctgttcaa tgggtacaga
actggaggtt taagtgagat aatgcgggtg aagtacccat 4740gtggtgtggg cttgaggaag
aaaacatggg acaatggttc cacatccctg ggtgacctga 4800agattaagtg tgaaatgtct
catgagggca cgaaatgaat attagttttt gttcccttcc 4860tctgctgtga gagtttgaga
gtagaaaggt gagagagacg gtactctgtg aaggaaggca 4920ggtccctggc ccagcacagt
gccagctcag gggattctgg ggcaggggct aagtgcatgg 4980gctgtgtggg cgtggtggga
agctctgcga accagaacca ggagcaagaa acagcattcc 5040ttgcgtggaa gggaaatgag
ggcaaaaggt ccgatgccta cagaagtcta caccccatgt 5100acttcagttc tgtctgtggg
tgcagcctct agggaggtgg gtgttcaggc actgagacct 5160ccatctgtcc tctgaccaca
gggaagccag cgggaagcaa aggtggggtt cttgagccac 5220acccagtcca gctctggtgc
ctgccctctg gggtgagctg ccttgagatg cacttcgctc 5280ctctgtgaac tgtctcggca
cccacttccg gtcactgccg cctgatgttg ttactcttcc 5340actctgaaag gcagggaagt
cctgcttctg taccccacca gtgctcagca gaggctccct 5400tgcaaatgcg aggctgattc
caacttcggt ctgtttctct ggcaggatgc ctgtggccaa 5460ggccccccag gtggctggtg
ggcaggggga cggaggtgat ggcgaggaag cggagccaga 5520ggggatgttc gaggcccgtg
aggactccaa gagaaaagcc cggggctacc tccgcctggc 5580gcccctgtgg ctgaccctgg
ttgtgctgac ttcagtgggg gtgctactct ggtatttcct 5640aggtaatgtc gtgggactgc
ctgggagagg cacctgggga ggacttagta gcaggcacag 5700caggacagaa cggggttcca
ggctcagcca tgcttagcat gttgctgtgt gatcttgggc 5760aagtcacttc tcctctctgg
gtctccctcc ctgtcctgcc agctggagac gctgtcagag 5820cctggctcca ggtcctatgg
ctcaggcctg cttcccgctt gggcaaagtg ccccaaggct 5880ccctaccagg tggggaaaat
gggctctcct agcagtcagt tcttgtgaac cagcattccc 5940cagagcataa acattgcctt
cccttgccta cagtcctcct gggttgcccc tgaggcttgg 6000agccaaccca ggcctgaaga
aggaggccca gaggcactca tggtgcctgg taccaattag 6060tgcctctgct cacttgagcc
cagcctgcat tctcctctag ggtggggacc acagctctat 6120cccttctggg tctccagggt
ccagcatgaa tgggggatgg agcgggcagc tggagagcag 6180ctagccttag gggcctctcc
catgtcctta attatggctg gcacacaacc ctcagtcagt 6240gtcctggtgc ttggggagca
actggcctgt gctctgggtc catccatcca ggcttccatt 6300cattcattca ttgaataaat
gctcttgagc atctattatc tttctctaag attgatggag 6360tctatcttct tccttctgcc
tttgacagtg ggaagtaacg gagaaaccaa actagactgt 6420gcctatacac tgtacactgt
agaagcccca ttcattcgtt catttattca gtgccaagca 6480cctcctgtgt gccaggtact
ggggtcagcc cctgtccttg tgattagcca aggcgtcaga 6540cctgacactt acgctaaagc
acggcatgtg ctgggacaga gaaagctgag ggctgggagg 6600ccacggcagg gacaatccag
ctgcctgcgt gatcagaggc atcccattaa acatcctgca 6660aaggttagct agtgctttta
ctggccgaat ctcctggtgg aattccaggc ctgttgaaag 6720caacctgggg accaaccttg
cagcagtgga gcgaaatcca cgtaggccta gatccaaggg 6780ggtcagggtt ggtggtgtct
ggaaccagcc tctgggagtg acgctgttgg gaaccccagg 6840tctgacatgg gcctgcttgc
aatgacttac agtgattcta cccagagttg agcaacgcag 6900gcagtagacg ctgtgtgcat
ttcaccaccg gcaagaagcc agtgccccag atagcacagg 6960gctgtggggg cctcctcagg
tttcgggcta atgagtctta agggtaaacc atggggcact 7020gggctggagg ggcaggaact
cacctgccaa ttatttctct ttgcagagga gtttaattcc 7080ccctgattat gctcctgggg
taaatcatcc ccaccccagg agaggtgctc catggggctg 7140aggacccaag gggtgagtgc
tcccaagcca actcccccac agagggatta agggttggag 7200gaggcacttc gggagctgtt
tgaaagactc ctcccgcctg gaccaggctg tgctcctgag 7260actgggtgct gggcaaggag
gtggatcaga gacatgcccc gccctgtctc gaagaggagg 7320tacacaagtg gccggtgaca
ctggtgcaca ggccccaagc gaggagggca gcctggcccg 7380aggagagggt ggggccgact
tctcaaggag gatggtagca gagcccttaa taccaccaac 7440cgtatttcct gggtcctttt
cctttcctgc tctcccaggc aggagttttg tatgttctca 7500agcccccagc acccgcctgc
ccctgtgtct tgcttcagtg agaaaacaga atggcttaga 7560agagaagccc cacacatgtc
ggcccacctg ccctcccagc tgcatcacgt gcactcctcc 7620ggagcccccg atcccgcccc
ctctgcgcac acaatggccc ggcaccagca agggtgccct 7680ctttccccca gcagcagcgt
ctatcagtgt cccttggggt gcctccccca tttctctgct 7740ccttgaagga gctgtcagtc
cacacaccta gtctctctgt gccctttcca acctggttcc 7800ccctgccccc caactccaac
ggccattgtc aagctcacca ggttgctaaa tccaatgtcc 7860agttctcagt cttcattgca
cttgacccgg gggctcactc ccacctccag aagccctttg 7920ctctcttgac tttgggccgc
cactgggtcc tttttgctca gcgggttttg ctttttctgt 7980gtccctgctg atgggggggg
gggcctctcc tttctctctc caccacttct ttcgtgatct 8040catctgctac ccttagcttc
gagtgccctt tataccctga tgacacccac atttgcattt 8100ctagcctggg cctctccctt
gagcttgact ctagagctgc ccctgctctt cctctcatat 8160gtctaaggag catctcaaac
cccaggagtt cagaccgtga ggtctctgca taatttcccc 8220cagacctgca cctcccacat
cccagtccaa gaccacttct ttctggcacc ttccccttac 8280tcctctcttt cttttccacc
ccagccccaa tttgccagca aacctggtca tctctgactc 8340caaaatacat caaaaacggc
tgaagccaat cacttcccac cctctcctct gccgcagccg 8400gggccaggct ctgtcccctt
ggacatctct gccctggagc cctgcaggtg tgtcctcgat 8460gctctgcctg cctctgtcca
gcgttcttag agcctttctc aacgtaacag cagagggacc 8520atttgatgaa gcaaaccaaa
tcctctaatt tccctgctta aaatctcacg tggggccagg 8580cacgtggctc acgcccgtaa
tcccagcact ttgggaggcc gaggtggatg gatcacctga 8640ggtcgggagt tcgagaccag
cctgaccaac agggagaaac cctgtctcta ctaaaaatgc 8700aaaattaaca gggcgtggtg
gcacatgcct gtaatcccag ctactcgaga ggctgaggca 8760ggagaatcac ttgaacccgg
gaggcagagg ttgtggtgag ccaacgtcgc accattgcac 8820tccagcctgg gcaacaagag
cgaaactccg tctcaaaacc aaaccaaaca aaaccaaacc 8880aaaacaaaat acctcccgtt
cctcccatct tacccagggt gaaagcccag gtcctcccag 8940gcctgacaag ccctacccgg
cctctcccct tcccaatctc ataccctcct gctgtcccct 9000tcccaatctc ataccctcct
gctgtcccct tcccaatctc ataccctcct gctgtccgct 9060tcccaatctc ataccctcct
gctgtcccct tcccaatctc ataccctcct gctgtcccct 9120tcccaatctc ataccctcct
gctgtcctgt tgctcactct ttgctgctcc tgaaccacac 9180caggcctttg cacttgcccc
tgcctgtgat actctttcca cagatgtaca tcaccttctt 9240ccctgacctc catactgcag
cccgccccac gccctggttt ccaccgcact gatcacctct 9300aacctgttat acgctatgtg
tggtttactg tctgattcct tgctagtctg caagctatta 9360agggcagttt tttcttgatt
gttctgttcg ttgttttgct catatagtcc caagtgcttt 9420ggctcagttc ctacacatag
caggctctca ggaagtattt gttgagtgga taaatagggg 9480tgtaaaccag ggctatgagt
ctaccctctt cacttcagcc aaaatagtct ttgcaaaaca 9540gaagtatgat ggcatcactc
ctgattttaa acctttcacg gtttctcttg ttcttcgggt 9600aaagacccag tgggccctgc
cctgcggagg ccccagctcc ttgccacccc tccccatccc 9660tgattgctcc agtcaaacag
gctttcagcc cgggtcctca ccatggtccc cgtgccacca 9720gtcctgtgcc ccatgctgct
ccctctgttt gaaggtactt ctcttcctct tctcttacca 9780atttacggtt tccccatccc
tacataccag ctggagggtc actccactct ggcccagcct 9840gagtgtcctc gtcacgtccc
ctcaacagca ccgagtggca ctgctccctg atggcactgc 9900ttacagatgg gtgccgcgtg
ctgtgtgttt gccagcgcca cgcctttctt atccaccgtc 9960agcttcatga ggggagacac
atctgtcttg gttaactagc gtaccccatg tagttggtgc 10020ttagcacaca cctgtgggat
ccctggatga gctcacgaat ggaaggatgc ctagtggtgc 10080tgacccacag ccttggcctc
ctgggcctat gtggatttcc tggccttcct gtcgttggtg 10140tcctggactg ctcgctgtgt
cagcctctcc ctgggaacct gtaggacacc atccatctgg 10200gagcctctca cctccctggc
accgtgcaac cagtttgtca tccaataaac tttggatgac 10260catgatgaca atggcagtaa
caaagatgat gatgatgagg atgatggtgc tgtggagacc 10320caagacactg aggctgagcg
gagggtgtgg gtggcaggag aaggcatgga agagacaggg 10380gcctttccca tccgcttcct
ccattaaccc tgctggttcc ttcctgggca gggtacaagg 10440cggaggtgac ggtcagccag
gtgtactcag gcagcctgcg cgtgctcaat cgccacttct 10500cccaggatct tacccgccgg
gaatccagtg ccttccgcag tgaaaccgcc aaagcccaga 10560agatggtagg aaaggatttg
ggggatgaga gggagggaat gtgagggtga aaagagagca 10620gtggggtctg atcacatgga
gccagttggt caacccatct ggagcactca cggggaccac 10680agccctgctc caggcaccat
ggaagcagat gaggttgagg gtgatgggaa agttagcgga 10740cgcttgagtc aatcgcactc
ggattagatc ctgatcctgc ctcttaccag gggtggagca 10800tgaccttggg aaagctcccg
cagtgcagct gacactgtca agggcccgat cctgcccttc 10860cattacagga cgtggcctgc
tcctgcctct ccgttacagg acggtggttc actgcacaga 10920ggctggtcta ctgcctgcca
ctctcaggct gcaggatcag tgcccagcaa ggcaggccag 10980aagtgccagg gagttattcc
caggaacacc cctgagccat gagcgctgga gtgggtggat 11040caataccaca gcttctttgg
ccctggctgg gggaacggtt cagagagtgt tccaggctgt 11100ctcccagaga tgccctgctg
ggctaagctc agaagctctc agctttacac tgcacattca 11160tggccccgtg ttggttaccc
actttccagt ctctccctcc caactactgt ttcccggaat 11220cacctccaaa taaaccactt
gccccacctt gtcaatggag ggtctgcttc tgggggaccc 11280agcctgaggc tgcctgtttc
ctcctccatg aagtgggagt gataacaaca ggacccggct 11340gcagatttgt tgcgggttgc
agtgaagttg agataacacg aacactattc ccacgccgcg 11400caaatgcttg agagcctgta
atcctgccag cagcgctgta gttggagatg tgcaaaaaat 11460ccagccagct gtgctaccca
tcagagctgc tggcttgtcc caggccacgg gaggaggtgc 11520ggaggggacc caggagctga
gtggggtttt tcagagttga ggagtgactt ttggcaaggc 11580gcagaggggt catcggcagt
gcgggtggag gtgagagtca ggtatagggg aaagggaaag 11640atggggaggt tcatgcatgc
cccggcctgg ccactcagca ctgtgtgact gtgatcaagc 11700ctgtccacct tggaggctcc
tgcatggagc ggggctgccg ggaggagcaa agggcaccct 11760gaagtaggaa gtggccctcc
ttgcagaggg tcccaggagc tcctgtcttc ccttcttaca 11820gctcaaggag ctcatcgcca
gcacccgcct gggaacttat tacaactcca gctccgtcta 11880ttcctttggg tgagttgtcc
ttgcccctga caagctcctg caagaagctg agacacaaag 11940agtgggaggg gactctatag
gcttctgatg caatgccttc atgtttcaaa tgggaaaact 12000aaggcacgga gagggaactt
ggcttcctgc atgtcaccct cccttcactg ggctcatctg 12060tagaatggaa acatgggtgt
gataggtttg caccaggcaa tgactgtgat gggtgatcaa 12120gggcttgaca ccatcaggcg
aggccatgtt ggagggcgat ggggttacga gcattggctc 12180cagggcctgg ctgccctgtt
cgcatctggt tctgctgctt gccttgaagc atagtctatg 12240aggcacaagt tcaactctcg
tgcctcagtt ttctcattca taaaataagg atgatgagag 12300cgcctccttc agaggttgct
aggaggcttc tgtgtgaaga cggacagcaa tggctggggt 12360gtggaaagtg ctcaatgtgc
atgagcaggg gcggggcagg ggccagacct cagaatcctt 12420ccctggcccc tctcatttct
gcctgcctta gggagggacc gctcacctgc ttcttctggt 12480tcattctcca aatccccgag
caccgccggc tgatgctgag ccccgaggtg gtgcaggcac 12540tgctggtgga ggagctgctg
tccacagtca acagctcggc ggctgtcccc tacagggccg 12600agtacgaagt ggaccccgag
ggcctagtga tcctaggtcg gtactgggag tggaaacgtg 12660gggttggcct cgtgaggttg
ggagaaacaa gctgtggtgt ggcctgggga ggctgcctgc 12720cagggctggg gtgccctcag
ggtgggcccc ccaggagggc ccccaggtga ggtagcagag 12780ccattgcatt caaggagcca
ggaaggaaag gtggggtagg ggtgcttagg gtcaatctca 12840gacaaggctg gctccaagag
tctcctctaa ttttattttc attgtatttt cttttattta 12900ttttgtcctt gtttatttgt
ttattcattt ccttttatca gaagccagtg tgaaagacat 12960agctgcactg aattccacgc
tgggtacgct acttttttcc cctccccact ttccttttga 13020gttggtgttt gtattgactt
tgttgtgtgt cagggggaca catggcctct gtcgtgggtg 13080cagagagccc tggcccagag
tcacccaggg gatgccatgg tggactcagt gatgtgtccc 13140cagcaagtct tggaaactgt
agggggagag gaggtggctt tgtgcacgca tgtattttgt 13200gtgtgtcttg tagacaagtg
tgcatgtgtt cctgtgtggg tgtgagaatg agtcagattt 13260agtggtccac aaacgtgact
ctccttctct atcattgact tcaacctgcc cacaagccat 13320ttttccactg atggtagaaa
atcacctcgc caattcacgg tgtgtcaggt cttttggagg 13380tagcggtgcc attgcattca
aaaacactcc ttccaccttt tcctttcctt cccagtcagg 13440ctcatcagcc ctccctccct
acctggtgcc atattgctag agtcaccttg catttctcca 13500agtggaccca caatctttca
gctgaccagc agagtcaccg cgctgcacaa ggcaggaggt 13560gctgtccaag ttgtagtttg
tgtgagttgt gcagtgcacc aactgggctg ctggactgta 13620cggcccctaa attctcagat
tcctcctaca gtatctagca ttgtcaccca gagccaaggt 13680gggggtgagc gtctcaaccc
cttctcaggg agggaggcag agtttaaatc cttgttatac 13740ttttccttaa cttccccttt
tcccatcctg ctggtcaaat gtttgctttg ttggatggag 13800gtgatgagct caaagtacag
ttttcaaaga ggtgaaatca tgattctcat acaaagatag 13860agtgaccacg tgtcaaatat
gtatttaact gattaacagg ggaaccagcg gaatggtaaa 13920gaatgcaaga aactgatctg
tctgtctgtc tatctatcta tctatctatc tatctatcta 13980tctatctatc tatctttcta
tctgtctatc atccctctct tgatatctgt ctgtctacag 14040ttgttctgta attatctgtg
ctcagtgggt gttcgtttca tgagtgaatg atttaacaaa 14100tgaatgaaag catgaatgag
gagactggtt cagtgtgcgt ccagggcaga gtctcaggga 14160gcagcggtaa caacttaaac
ccttgaagtg gactttctga gcacttcctt tatgccaggc 14220cccattcctg tgctgaggac
accaggacga ccgtgtcctc acccctgccc tcggaggagc 14280ttcaagcccc atgagggaga
cagagcacat aaacagactc tcataacatc aagtgccagt 14340gtgaaaatag agggcccaga
ggcagtggag agagggaatt gtttgttcca aagcagagga 14400ggggtaaatc aagagcctca
cacagagtcc cagatctaca ggaggaaggg gtgctcctga 14460ctgggggatc ctggaagact
tcatggaggg ggcatcagat ttgggcatgg gctgggcgtg 14520gtggcacacg cctgtaatcc
cggcactttg ggaggccgag ttgagcagat cacctgaggt 14580caagagttcg aggccagcct
ggccaacatg acaaaatccc gtctctacta aaaatacaaa 14640attagtgggg cgtggtggcc
catgcctgta atcccaggta cttgggaggc tgaggcagga 14700gaatttcttg aacccaggaa
gtgtaggttg cagtgagctg agattacacc attgcattcc 14760agcctgggcg acaagagcaa
actccattta aaaaaaaaaa aaaaaattag ccgggcatgg 14820tggtgtgcac ctgcagtcct
agctactcgg gggtggagga ggggaggcta aggtgggagg 14880atcacccgag ctcaggaggt
tgaggctgca atgagctgtt gtgatcacaa cactgcactc 14940cagcctgggt gacaggctgt
ctcaacaata aaataaaata atttttaaaa gaaaaagaaa 15000ttcaggcgtg ggggtaggca
gggatttgtc agggtgagaa ggagaaaggg ttccctgggc 15060agagagaatg gcaggggcaa
aggccaaggg agagcaacac ccaaggcatg ttcagttact 15120tcctcccagc cccgagaggt
gccaggctcc ctgacggtac ttctgattaa caagaggtta 15180gcacacacct ctccactgaa
ttcacctaaa aaaaaaaaaa aagagtaatt attaaagtgg 15240caagaacaaa gaatctgctt
agagcaagat ttaaagaaca caaaacccta ggaagagcca 15300ggcatctttc cccagctgct
ggtggaggct ctgtcccttc cctaggcaga tactgttggt 15360ctctccctgg ggagctcggc
tccccactgc agtcagcaca gccaggggtc agggagaagg 15420agctgagcca caggcggcag
catcagagca aagtgtattc accttcattc ccttcctggt 15480cctcagcact gcccggagga
ggtcatagga cagggattat tatcacatcc atttgacaga 15540acttggaatg gctaagccac
tggcccagac tcagttaact acccagaggt agtgaacatc 15600tacctctaca gagtccgagg
ttgataatct acaatcaata gtaagtcaga gttattattc 15660ctgagagcct ccgggggact
taatcagacg atgcctgggg acagagactg gctcactgca 15720gcctggacac cgaatctggt
ccactgctgc ctgaccaaga atgacatcat cacacagctg 15780atgagtgttg gtgctaggtg
gggagggtag tgcccctcct tccttctctc cagttttctc 15840cccctccccc ctcccccggg
ggcccagcag atggctagcc tagggagctg ccctcagtct 15900gtccaagctg aaagggggac
ctttgcttgt cggtggcctt ccaaataaga cgatttaaag 15960cagagaaaat agactgaaaa
ctcaggtttt ataatttcat gtcaccaggc tgcctcccac 16020atcccaggtt cattcctaaa
tccccactgg ctcctggaag aacaccaggc ttctagtgag 16080gtttaaatga gatactggat
gctccatggg agagaatatg ttcactgcca gaccctggtg 16140cctagatgga acacacagta
ggtgcacagt cactgttttg aatgaatgaa tgaatgaatg 16200aatgatgcag gtggtactgc
tttgtaagtt ctagcagtgc atcagagctt atggattaga 16260tggaagagca gaggctcact
ggtgtgtggg gtaggggtgt agggtgtaat ggtgaaggag 16320ttgtgaagcg aggcagccgt
gagatgggct aggtctgagc ctcaggcggg gccagcggca 16380ggatgacaag tcacaggcct
ttcttcccag ccctacctgc tccgtttccg tcacacccac 16440ctgaggaaca ggcaatgtct
ttactgagcc cctactgtgc aaggcgccgt gctgggcact 16500caaatgtgcg tcatgtcaca
acctgctgat gaccctgcaa gggtggtgtt attgtcccat 16560tctacagatg aggaaaccaa
ggcccaggaa agattaggtg gtggctgggc aaacctagat 16620gtgtccggcc caggtctgtg
caatgggcac aatcattgaa cgtatctcat agagctgttg 16680tgggcattca gtgagacact
gagggaaggc attcagctcg gtttctggcc tgtagcaaat 16740gcttgataag cacctgtttt
attctgacga cttcaccatg attagctcaa agctcacgtc 16800ctcccctcaa ggcagcctcc
cagactcctc cttggggcag tcccttctct ctaccagaag 16860tgaagccctc atccccttgc
ctcctcattg cgtgtggaat cgctgttctc cacagtgttg 16920ctcgcagcag ccagaggagt
gtgtggtcca agccagccca tgtctagcct tgctcaacct 16980tctgtggctc cctatggctg
caggagaaag cagcgtcggt cctgggagtg gcctggtccg 17040ggcctccctg ccttcagctt
gtcctctaga cacatgtgcc ctgtgtgtac ttttctcaaa 17100gctgcctggc tcgccccagc
ctctttgctc acgcggggac ccccaggacg cccccagcct 17160ataggctggg tttggaacca
tcacctcctg agctattctt gcctgttctg tgtctgtttg 17220tctccgctgt catccatgtc
cccaggcagt gactgtatct ttacctgggc actgagaaac 17280catgaagctc agtgggtgtc
cgttccatga gtgaatgact gaaccaatga acaaatgcgt 17340gaatgaggat actggcaggg
aaagagaagg atcgggtaga gcgtgtctgg ctgtccccac 17400ctggctcccc tgcccggccc
atcctgcctc gggaaggacc ttgaggaacc tggctcccca 17460gggtcccctc cttctgggtc
acaggaatca ggggctttgc ccctcttccc gctccaggtt 17520gttaccgcta cagctacgtg
ggccagggtc aggtcctccg gctgaaggga cccgaccacc 17580tggcctccag ctgcctgtgg
cacctgcagg gccccgaaga cctcatgctg aaactccggc 17640tggagtggac gctggccgag
tgccgggacc gactggccat gtatgacgtg gctgggcccc 17700tggagaagag gctcatcacc
tcgtgagtcc ctgggaagga gggcgggagg gagggctgga 17760aaggggaatg gctgattagg
gggttaaaag tcacacacaa cattcttaga caagtggggg 17820taggaccttg ggcctgggta
tctgggagac aggacggcta gtctagaggg gataggagag 17880aggaggctgg agatggttgt
gtagtgcgag cgcttcccct ccccgagcct cggttttccc 17940atttgtaaca aagctgttgt
tctagatgac ccgtacagac agctctggga ggcactgtgg 18000cttgttggga tatttcagag
cctggctgca gcctggacgt tcaacctctg ggctcattcc 18060taaatcctga ctgcttcctg
gcagagcacc caccctccct gcttccaggt tgctggtggg 18120gtttaaatga gacactagat
tcgcaatggg aggggatatc ttcactgccg ggccctggtg 18180cctagatcaa acgcacagtt
ggtgtgcagc atctattttg agtgaaccaa tgaatgatgt 18240aggtggtact gctttgcaag
ctctagcaat gcatcagagc tcatggatta aatgtaagag 18300cagagaggtt tactggtgtg
tggggtgggg gtgtgggggt gtgatgggga accccctgcc 18360tcctagctgt gtgccctaag
ttactttgcc tctcagaacc ttcttacctt gcatcttgcg 18420ggatcattgg aggatttaaa
tcagactatc tgtaccatga tccttacaca tagtgagtgc 18480ccagtaaatg ctagccatta
ttgttatcat tatatatagt ctaactggga ctgggccaca 18540aaaggcgttg agtaccaggc
gccgtttgga atttgataag tggggagcta ttgaaagttc 18600tgagatctgc ggcatgtgcg
tgagctgagt tcctggaggg ctctgggaag cacagagaag 18660ccagacacca tctgacttcc
aggtccaaaa agggtgggga cacttagggg cttcccctgg 18720ggcttctcca ggtgcccctc
agcttgggag gggacctgac tgccaggccc aactctgttc 18780ctagtcactg tggctcctgg
tggctccctc atcccagacc cttggagaag ctctaaaatg 18840acaggtcaga caacatttgg
ggttctcaag ctcgtacccc agaaacctgc tagggaatgg 18900gagtgagggg gcctttggtg
gtgacaggaa gacagagcag gtggcccctc gtccaggttc 18960aaccatgtgc tttgtttctg
cgttccatgt ttcattgaca agggctctgc tgctaggtaa 19020ataaaataac cccccccaac
aatgaaagca aaagccccct ttaaaggtga cccccaggtc 19080ttttccatcc tgatatcgta
tctcccacct cccagggaag atgagccagt aaggcccaaa 19140aggacatggc tgtgtgggag
ggtggggggg ggcgcggtct ggctggggag actagagcac 19200tgcaggaaga ccaagctgga
atggtaggaa gaagggacga gggcctgggg ggcgagcggg 19260gtggtgcctg ctactggagg
ccacctccct cctctggcga gaggccaggg gaactgcccc 19320atctccggac tctgggcacc
aagaccttcc cagggagacc ccctgggctt atgcacacca 19380cgccttcaac cggctgcagg
ctgctcggat gccacgtgtg gtgattttgc ggctgtcctg 19440ggaggagctc aggtactcgc
ttgccaaggt gccccaaatc cctccagcgg caccccttcc 19500tcctgtcaag gcccaggtgc
ccacgcacag tcagcaggca gggaggctat tgggttaccc 19560actcaggggc aggcagggct
gttagtttct tataaattgg cccatcagat gcgctgggcc 19620tccagagggt attgtcattg
acactgggaa gtttggtgga ggttggtgag agggtgaagg 19680ggcgctgggg aacccgtgtc
tgagacagga agaccagggg catctgtgta tgtgggaggg 19740taccagtcat cacaggcaat
gcctagcgca ggcctgtctc tgccatggac tgccggtgag 19800gcctcagttt ccccatctgg
gaatcaagaa gctgacttca acagtgtcac tggagtcttt 19860tccgggctga cattccagac
ttctaaaagc ccagaagtct aagatacggt tatttgttcc 19920gagcccccca ggcaccaagc
tctgggcaga tttctggggc accctggggg tcaccagacc 19980acacctgcct tctccctgtc
gcatccttga acacggccag gagttgcagt gcaggcagcc 20040agaaggggtg gcccctgcag
atgccagtct agtcttcctg ccagggatgc taggggccac 20100aggtgattcc gtagcagggt
ggaggaggct ggggagggag catgagactt gagccagcca 20160tcatcattga actgtaagct
ccagaagtct ggggaacctc caggcctctc tcacccaagg 20220agctggcctg gtccttggag
ggccttcagt ctgtcctctg aggccaggga gatacagact 20280ccccatggac acacagcggt
ctctagtagc agacctgggt ccagaaccca gatatccaga 20340ctctcatcca ccatcccgga
gcagctgcct gccaccctcc ctgccactcc cctcccagac 20400cccggcccag ccttgccgct
tttctgttct gccagggtgt atggctgcag ccgccaggag 20460cctgtggtgg aagtcctggc
atcgggggcc atcatggcgg tggtctggaa gaagggcctg 20520cacagctact acgacccctt
tatgctctcc gtgcagtcgg tggtcttcca gggtgagggg 20580tgaggggact ctggggcagg
ggaggggtgg tggtagaacc ccagggccct ccactgggct 20640cactgctcac ctttttgccc
aacttgggga cgggatggag agggaaggtt ctggaagctc 20700ctgctgctct ccactcccca
ccctggcccc actcttcctt ccgccatttg cacttccacc 20760ccgctctgcc ccttgaccct
tctacccgtt cgcagtctct gtcttcccgg catcgctccc 20820tcacttctct cctctttccc
tctccatcct tcttcctcct tttctctttt ctgtgctgac 20880tgcctctcct ccctcctcac
cctcctggac ctgtgtcccc tcccctctgc ccctccctgc 20940cctcttccct cggcacccac
cagtggctgg gcctggaaca ccggtctgtt tgcagcagga 21000ctcagaactc cttggattct
gccctagaca gtccgcttac ggccaagagg gcacagggag 21060cttggggagg catgatggca
gcacagccag gccagggcca ccggtgtgac aggtccccca 21120ctgccctccc agcccccacc
ctcctcctgc ttcaggacct ccccccttgc ccccttccta 21180ggaagggcac gtcccactct
gcactggaca gctgtcctgg gccggggcca gccatacctc 21240tgggcaggaa gctcaaactt
tgccatttct ggagcttggg aggggaagat ggcagagagg 21300aagccacaga gtattggcag
ctgcttctcc cccgaccctt gtccccagtc tgctccctcc 21360cactcagggt ccctgccctc
ttctcagttt atccctaaac tctctggcag ggaccagggt 21420ccccagctgg ccaagctgga
gctctaaatg ggtagcagag ctgttctctt gggagtctga 21480cacaggctca aggcaggagg
gaacaaacgg ctttgggggc cctggcccca tggagagatg 21540gccagggcag ctgagcgtgc
tcctgtcctg acccctggac ccctcagctt ctcactgtgt 21600agcctcaacc aagccactcc
ttttctccaa acctcatctt ggaaaagggg aacagctctc 21660tctctcccag ccgccaccgt
gaggcctgcg caggtgtgaa tgcattttgt aaactggcgg 21720gtgctgtccc gcaaatgtca
ataactaaca cggatcgaac acttactaca tgccaggctg 21780tttgaatgtt ttatgtcttt
ttaatcctct ttactaccct atgaggtgtg tgctattatt 21840gtccccattt tacagatgag
gaaactgaga cccaagttca cacagttaca cttaaccaca 21900gcactttgct ggcagaggtg
gtaggggtgg tggggttaca agctgcgctc gcctgctggg 21960aggtgcagcc aggggacccc
gtgtaacggc tgctctcctc gtccagcctg cgaggtaaac 22020ctgacgctgg atgacaggct
ggactcccag ggcgtcctca gcaccccgta cttccccagc 22080tactactcgc cccgaaccca
ctgctcctgg cacctcacgg tgagacccca ccctgcctgc 22140ccacctgtcc tctgccccaa
gcacagcacc ggtccctggt aacccgggat gagagcgggc 22200agtgtcctgc ttctgctgaa
gcgcccacag gctgagccct gggtaccaat cctgctaggt 22260ggagaggggt atgggcgagg
tctccctctg tggatcacag caatgcctgt ttgttgagtg 22320actgacagac tttagcccca
cctgggattc tatgtctcct tctctttgtt gttagggagg 22380tgggttcacc aatctggcca
caccccatgg gccacctgat ggcccgctcc tccctcccag 22440gtgccctctc tggactacgg
cttggccctc tggtttgacg cctacgcact gcggaggcag 22500aagtatgatt tgccgtgcac
ccagggccag tggacgatcc agaacaggag gtactacttc 22560ctctcctccc tccagcttcc
tttcctccct ccccctccct ctcctccctc ccctacaggt 22620gaccccctca ttggaagccc
aagtccccag cctcagaggg acagcaggga gagccagcag 22680aggctggggc tggtgttggg
cctgttgtcc tcgtcccggt cccccgctgt ggccccagct 22740tcctctctag ctaccccagc
agtctcagac actcttggtc atcagacacc ttggatgttg 22800gttctaatta cagcaaaata
gtctcatctc cttgggtgct gtaaccccct ctggcaccct 22860caattcttca ataaaatgat
tccagagcca aaggactcat gggcacttcg gtgccttccc 22920cctaaaccca aggtgtacaa
tccaagggac ctctccctta ttatgacccc ctgatgcaca 22980gccaggtcca atcccattgc
acagggtaac atggaaatca cgggtgccct ggatcccccg 23040aatccccaac agggcacttg
ccctcttccc tgctcttgcc cttgccccct ctggtaacta 23100agtttctgac aaagaagtga
gtccttccag ggatgtgagc aagagacagc agagttaggc 23160tgagcgacca ccgtcaccag
ggtcactatg gcatgaggcc aataagtgcc ccctgggcct 23220ggccaccagg aggccatggg
tgttgccagc agcttcagag gcctggggtg ggcagggagg 23280cagggaaaca gagacagcgt
atatggacag tttttcattt gtctgggaag aaaagagaac 23340taggcaattc aaggaagggg
catttaagac aggagaggtt ccgtatctca aatgtgtgga 23400tcatcccagc atccccagag
ggagagaagg aggctcaggt acaggtaata ttgtttagag 23460ggtggagggt gggcaagagg
agagggaggc cctcccacgg ctccattgtt ggggagcaga 23520ggtttgggga gagagaagag
gaatattgaa gcagcgatgg cagagccagg gagacccttc 23580ccctgggaat ccagggtgaa
aacggtcatc gtgtcagcgt caggaaagag gagactaccc 23640ctcatcacag actgggctct
gccctccctt ccaaccccag aattctgggg gcctaatggg 23700ttgagagtct agtacgcaag
attcatcatt tcttggtttc acagagtttg aatatccaag 23760atgccagtct tggaagatgc
caaaattgga aggctctggg gctctagaat tcttggattt 23820ctggggtctg agttcccatt
caccaacact tgtaatttgc ttgttggttg atcctattca 23880aaaggatcat ccagacaaaa
ggtgacagag aatgacaagg tttgcttgac tccctttttg 23940caatttatct gggactagga
ttaaaggaaa ggagaagaat tacccatggt atgatttagg 24000actatgctgt tgggggtgac
atgggaagtg actttgggcc tgtgctgctg ggggtgacat 24060ggggtgtgac ttcaggcctg
tgctgttggg ggtgacatgg ggtgtgactt caggcctgtg 24120ctgttggggg tgacatggtg
aagcagtggc ttcagggctt tgcatttggt gatgatatgc 24180tgatggagtg tgacatcagg
cctgtgctgc tggggtgaca tgctggtccg gtgacatcag 24240gtctgtgctg tctggagaga
aggcatctgt agcatgatgg gggcacctct gggaatggct 24300gccctgaccc tcatggagct
cccttggggc tgccttgctg ctcacttagg ctgaggatgg 24360ctggcctcac ccccgctcac
aggaacccgc agggtgaccc tgagatggat ccatgattca 24420cagttctgcg aatgatgaga
acatgttttc ctgcctcccg ccctacccca gagctgaact 24480ttatgtctca gggaggctca
gaaaggagaa ggaacagtct tgggtctgac acccccatct 24540catccctcac ccccatggca
attccatttg ccagaggtgg ggccccagca ttcaggggtt 24600gtggggagtt cagtggcctg
gagttagggg ctaagacagg tgttcagtgc attggcccaa 24660caacctgtgt ggtcattggc
accgttccca tttcccagag aagaaaatca aggctcggca 24720ggattaggta acacgcagat
aggtccacag ttggggtctc tcccataccc caccagccac 24780aaacggcagg ccaaaggatg
ctccacccca tgcttcctgg gggagggccc tcctccctcc 24840ctgatgcagt cgggcaaggg
tctgggtact ggggacacag ggacttcgtg agctaccctt 24900gggtaatgac agagagagtg
tggaacacgg atgggagaat cttttcccta atccaaagga 24960atgatgcctc aatggtgaat
ttgaggcgct aggacagctt ccaatggggt ggagggatct 25020ccccagagtc tctgagcacc
attgagctat agaacgtgtg ggctggactg gtcctagcac 25080ccaacctatg gtacaggtgg
ggaaactggg atcagcgatg gttaaaagga cttggccttt 25140tgtccctgtc ttttctgcct
ttcagtggtg gagatggacg tcagggtgta gctaagcggt 25200ggctgggtgg tgaggatgag
gcctggcagt tccccgtgcc cccacagctc ccctctctct 25260gtccaggcct cccttgccat
atgggggtgg aagtgctcag tggaatctgg cgtcagggtt 25320tgcatggatc tctagatgcg
ctcccttcct tgtctgtgaa acaaggggtt caggccagcc 25380ccaacctttg attacttacc
catcagggag atgctgtctc ccatacaagt tgcgtttatt 25440aattcctggc caagggccat
tccaagtcag gctggtgagg cagaaagtgc tttagtgtcg 25500aaaccagaca ggccaaggct
cagcacctgt ctcctctgct tcctacctgg gcgaggactt 25560agatctccca gcctcaggta
actcatctga aaaaaggtcg tgaaagagac ccccgccctg 25620ggaagactaa gtgagacagt
gcatggagaa cactgcacac gtgggtgtgg gtcaagtgca 25680gcgaccctgc gttcctcacc
ggccgtcact ccgctctggg caggcacaag ctgaggggtt 25740tacggtgctg gctctttcag
cctcaacaac ccagcgagga atcacgtgcc tgtacagact 25800tcatagacca gtgagacacc
caagacagag acacgaagta atttgcacaa agtcacccag 25860cttgttgagc cagacctaag
gccaggcagc ctgatccgga gtgcacgtgg gtgcacagat 25920gcatgtctgt gtgcgtgcgt
ccatgcatgt ctgtgcacgt gtgtgtgcat gtgtgtgtgg 25980tccacgtgtg cgattcttcc
ctctgggcct ctagtggccc atgccagctg gtgactccct 26040cagccatccc cagccaaccc
accggcatcc ggatgggggg atggatggtt tctgtggctg 26100tcccaccagc tgcagagtgg
cctgggaagt cccagccctt tcttctcaga ctttcattaa 26160gggtccagga tccccagggg
cagactcttg tcccctcccc gcagactcct cctgtgcgaa 26220tgactgtgga agggaaggca
gaggtggtac ctgcgaacca tctgcactgg gacaccgtgc 26280cctctagtta tgatcatggg
cgatagtgat catcccatgt agatgctgag aaattcttag 26340aatgagcgat gttggaaatc
tgcttgtgtg ggtggcaaag acatgagagg tctagggaag 26400agcagatttt cagacaaggc
actttaggga gggggaggtg cagtcctttg gcccagaatg 26460cccattgatg gagagggtgt
gtcaggggag agggtatctt aaccctcaag tgccagcgta 26520gtgatgagga aaggctggcc
tgggcctccc acgggctgag catccttagg cacctcacct 26580gactcctctg agcccgtggt
gcctccttca ccccgaccta cctgctgtct acctagcttc 26640tcctggtgcc cacttgagcc
cagctgaggc ctcatgccct tgagaggcct gagggtggta 26700gaaggacttg gcctgtgaga
tctgacctcg gctgctccgt ttcgcagaag ccactctcac 26760gggctgccac caaagcacag
gcttccccct ttctgggaac ctgcctcctg ccagcttcct 26820ctcctgtgac atcacttctc
ttgtgagagg ccccaccatt tccactcact cccagccagt 26880ggggacaggc agaatcatgg
gttccctagg ccnnnnnnnn nnnnnnnnnn nnnnnnnnnn 26940nnnnnnnnnn nnnnnnnnnn
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 27000nnnnnnnnnn nnnnnnnnnn
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 27060nnnnnnnnnn nnnnnnnnnn
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 27120nnnnnnnnnn nnnnnnnnnn
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 27180nnnnnnnnnn nnnnnnnnnn
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 27240nnnnnnnnnn nnnnnnnnnn
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 27300nnnnnnnnnn nnnnnnnnnn
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 27360nnnnnnnnnn nnnnnnnnnn
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 27420nnnnnnnnnn nnnnnnnnnn
nnnnnnnngg tcacacagct tgttcctggg gcaaagtcag 27480gctgtcagtt cagctctgca
gccccaggtc cagagctctg gccatgctgg gtgatgctct 27540cctcccctct tcagcacttg
ccttctgtga ccctcctttc cctttaacct gtttgtagat 27600aagggcatgg tggtgtgcac
tcatccaccc atgcaccctt ccttccttat tccttcttgt 27660gttctcccca cccttccatc
catccaccca tccatgcatt tatccctcca ggcagtactt 27720cctgacaggt cccttcctga
cagggtacct cctggatgag gcaagaagga aatattcccc 27780atattcaacg aggtgaggaa
gcaaggcagg ccacacggtg caaaaatgtg ccttcagaca 27840ctcagtactt tgtagccgag
atgaattggc aggcatcgca gcagtcaggc ttctggtgct 27900tcttggagag ggctagagag
gagcacttga tggacaggag gccctggaga gccagagaat 27960gtgcaccctc tcccagaaag
ctctgcagca gaaacagaaa actcagatgc gccaaggggc 28020caggccaggg ctagagccta
tgacgggggt agttttccag gctcttttct ttctttcctt 28080ccttccttct ttccttcctt
ccttctttct tttttctttc tttcttttct tttctttctt 28140tccctttctt tctttctttc
cttccttctt tctttccttc tttctcttct tcttcttcct 28200ccttctcctc ctccaccatc
acctcctcct tctccttctt ctccttttcc cttcttctcc 28260ttttcccttc tcccttcctc
ttcttctgtt tctcctcctc ctcttctttc ttcttctttt 28320tcttcttcct cttcttctcc
ttctcctcct ccttctcctt tcttcctctt catctttctt 28380cctcctcctc ctccttcttc
ctcctcttcc tcctcttcct cttctccttc tccttctaga 28440ggagcaagaa tctggattat
tatgtgaaat tagctcgaga ctcaatgaag caatttctac 28500acgctgcata aacacattgt
ctttatgctg agtgactccc cctgggccac tagatttcag 28560cccctgcctt gaattcctct
ctggtgcttt ctaagcagaa gcttgtccta ggggtccacc 28620accactaccc ctgctccagg
cctccagagt gagaaccaaa tgccacccag gcagacagtt 28680tcccgggtac gcggtgaagc
cttggggaaa ggttgctgcc agctacaggc tggttctagg 28740actctcccgg gaggttaata
gagagaactt cctgtagcag gcacaggtgc ctttgcctta 28800cagcccctgc ccaaggcttg
ggtgacactg cagccctcca cgcagttgct tctagggtga 28860aacgttccac tcccctccaa
ccccggcttg ggttccttct ctgtctctcc acaatctccc 28920tgtgactgtg ggagggacac
cccaaggccc atgggatgtg cttgactcct cattccccgg 28980accagtcctt tgcaacccct
ggctcccctg tctacttcct gaggtccttc tgtgaggaaa 29040acaatccatg ataactttat
aaacagacat caaaaccagg gtttcctggg ttttacgagg 29100gcaagagggc cgggtttgct
caggggcgcc ccctggcggt gcctcatccc ccaccggccc 29160tgctgggctg ggggaaccac
ggtgggaggc agcgactccc aacctgctct gtctcaggac 29220ccagttactc tctgcaaaat
gagcacccta aagagttgtt gcttatacag gttatagatc 29280tatacctgta gcattagaaa
ttggaacaaa attttaaaat gtttattaat tcctttaatg 29340taattatcag cccattacac
atttgaatat aaataatatt ctatgcaaat tagttgcatt 29400ctccaaaagt aaaaacattt
agtggcaaga gtactgtcct tttacatttt tgtacatttc 29460tttaacaact ggcttcacag
accacaggcg ggaccttcga atctgcctcc gagttccatc 29520agtcccgatg tcacacatca
cgtagtctct ggaaaactcg tctgtcacct tatgagagaa 29580tgagggcaaa aaaggcaaat
gacatctgaa tgttactaaa aaaaaatgac ttttggaccc 29640cagggggtcc cctgactgtg
ctctgagaac tgctggttgg tgtaagggta agatcgtgat 29700cactgtggcc agatagactt
atgggggtgc cagagtctag gccaagtctg tggaagacat 29760gggggatgta gggggctcag
acctcagagc tactggtgca gtgggaatca ggatccctcc 29820cgccaagcaa gctaggtgag
ctcttctggg ccctgaggcc agattctgac gacaccttgg 29880ctcctgcgct catgagcctc
atctgtaaaa tgggatgaga gcaattcctc cctccctggg 29940cggaggtgct gcttgaaact
cagaatcccc atgcaacgag gccttgtgat gccatagctg 30000atgaggctca gccccagcca
cacaccttga gatgttaaaa cagcctcaaa gctcatcttc 30060agctgttcag tggctggtga
attgattaac ttattgaacg gttaagtgct taccacgttc 30120tagaagttct ggggaagtgc
ctggcccctg ggaatcatgg ctggctccaa ggggtttgga 30180tttgctgtgg ggtatctcca
tcggccctca ggggtattcc tgatgctctc tggatttcct 30240tctgctttct ctgccagggg
cattttcagc tctccctgca gattttcagc ctgcgccctg 30300tgtgtgtttt ccccatctgc
aaagcgctct gatttgctct gtggcaggca tttctatgag 30360ctgaggaagc tgtccccgtc
tgttctgcaa gcgtgtccca cctgggatga aaaggaaccc 30420ccggcggctg tggagggagg
gttccactgt tctcagggag tggttacacc cactctgtga 30480aggcacgccg ctgcccactt
actctggggg acgaggtgcg ccggactctc tacaggagga 30540gcccctggac ctatgaccta
gagatgggag ggctcctacc tgttctctgg taggagagaa 30600agactcagcc tctctggagg
ttcccccacc tgctctgttt aaacaagtgt atcttcttgg 30660tggtgttgtg gcaggggagc
aggggcggtg ttgtccagca gggatgtgag ggtgctccca 30720cagctggggg tggtcccacc
ccgtgaggcc atgcacggag aaggtgctgc ccatcagcac 30780taagttactg gtcatgggag
aaggactggt ccttccctca aacccacagt gtcacaagga 30840ggcaggaagg atggtgccta
aacggggagc actgctgccc cctcgtccca caccaacctc 30900aaggcgaata accttgcaca
tctgtggaca gtaggccagt caagggcttt tgcctcgact 30960gacacattga agccttttgt
cagattcaag gtcaacagaa ataatttttc cttccctccc 31020tccctccctc cctccctccc
ttccttcctc tctctctctc tcccgnnnnn nnnnnnnnnn 31080nnnnnnnnnn nnnnnnnnnn
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 31140nnnnnnnnnn nnnnnnnnnn
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 31200nnnnnnnnnn nnnnnnnnnn
ntcctgcctc agcctccaga gtagctagga ttacaggcat 31260gcgccaccac accccggcta
attttgtatt tttagtagcg acggggtttc tccatgttgg 31320tcaggctggt ctcaaactcc
tgacctcagg tgatccaccc acctcggcct ctcaaaatgc 31380tgggattaca ggtgtgagcc
actgctcctg gccaattttt cttgttttat gagggaggaa 31440agtgaggctc aaagaaggac
cctgacttgc tagaacctca cagttcacag gtcactgtga 31500ctagaattga gttttatctg
gcaggcaatg ggaagccatt gaagaatttt gagcagggga 31560gtgatatagc caggctactt
tctagaagat aactctgggg gtgaacagtc acccaaggga 31620gaaatcaggg cagaggaggc
gcagtggggg tgcagctccc cctgcccctc tggctgccct 31680gtccttgctc tgtgcacggg
acccaggaga ccagccagtg cagccctgag ttgtgtctga 31740tttcccccag gctgtgtggc
ctgcgcatcc tgcagcctta cgccgagagg atccccgtgg 31800tggccacggc cggcatcacc
atcaatttca cctcccagat ctccctcaca gggcctggtg 31860tgcgggtgca ctatggcttg
tacaaccagt cggaccgtga gtatgggcag ccgggggaac 31920cccctgcagt gactctctgc
ctcttggcca tccctggaac caccaagggg gctgtaggca 31980gctgcttatg aggccgaaca
aaaggagaga gagagagaga gagagagaga gagagagtgt 32040ttgtgcttgc acaaatttat
gcagctttgt gtgtgcccac gtgtgcaagg cagccacacg 32100ggtttgcaag aatacacact
catacatagc ctgtgcgtgt gtctggatat gtatgtgtgt 32160tctgtgcgtg tgtctggata
tgtatgtctg cttggaatgt gtacacgggt gcccaggaac 32220acatggcgcc tgtccatgtg
tgtgtgagtg aacaggtgca ttcatgtctt tgtgcgcctt 32280tggggctatg catggcctaa
cggcgccctc cctgcctcca cggtcccctg tggtttcgca 32340gcctgccctg gagagttcct
ctgctctgtg aacggactct gcgtccctgc ctgtgatggg 32400gtcaaggact gccccaacgg
cctggatgag agaaactgcg gtgagcaacc cgcccgcgca 32460tccctcctct ccccgccaat
ccctcctccc tcctcacctt ccctgctctg agctgagtgg 32520agaccccact cctacatgta
gcttccatta tcaacaccca ggaagtgggg ttctctcact 32580gtgcgggggt ggcaagatga
caccacctcg tgggacagtg gcagggacaa gtggggagcc 32640aggtctcctg acttccagct
cagggctatc acccccaccc ctgtcccagc cagccttcca 32700ataaaggaac agaatgggtg
agggagatgt ccccctcctc tgccctgtca aaggtttaaa 32760tatgtgtttt tccaaaggaa
gcaagatgtt catggccggg gggatgatcc tgccacggtg 32820ctgggggagg tgcctgatat
tcggaaactg aacatctggc ttcaagttct ggctcagcca 32880agtgaccttg gacaagtcac
ctcatctgtt tccaccaatg aaatggggta tctcacaggg 32940ttgctgtgaa actttgggtg
taaaatagca gagaaagagg ccgggcgcag tggctcacgc 33000ctgtaatccc agcactttgg
gaggccgagt agagcggatc aactgaggtc aggagttcaa 33060gatcagcctg gtcaacatgg
tgaaacccta tctctacaaa aagtacaata attagctggg 33120tgtagtggca ggagcctgca
atcccagcta cttgggagtc tgaggcagga gaatcgcttg 33180aacctgggag gttgcagtga
gattgtgcca ttgcactcca gccttcatga caagagtgag 33240attctgtctc aaaaaaataa
taataataaa ataaaataaa ataaaattaa aataaagtag 33300cagtgagaga tttgtgatcg
gtaatgtgca atacagcaca ccttccacag gcatcgccaa 33360gccccagctg gctcctctgg
cttcctccca cctgtcccct ctctgtatct ccacacagtt 33420tgcagagcca cattccagtg
ccaagaggac agcacgtgca tctcactgct taaggtctgt 33480gacgggcagc ctgactgtct
caacggcagc gatgaagagc ggtgccagga aggtagggca 33540gggcctggct gagtgtctgc
agggacacca aaggcagtct aggcctgcta catgcttcag 33600caaaggtttc tagcttcttg
tcccaacacc caccaacccc tctgtattta cacctgtata 33660tctatccatc catccatcca
tccatccatc catccatcca tccactcatc tatcttctgg 33720tctccaatca ccctgtctgt
ccatcgattc atacagctac ccatttatcc atgcatctac 33780tgacctttgc aaccactgat
cttcctatca tcaaactgtc aatctaccca cttattagtt 33840tggctgacta cctgcctgta
atggccactg ttccatccat ctgtccatcc atccatccat 33900catccatcca tcatccatcc
atcatccatt catccatcca tccacccatc catcatccat 33960ccatccatcc atccatccat
catccatcca tcatccatcc atccacccat ccatcatcca 34020tctatccatt catccatcaa
tctatccatc atccatccat ccatccatcc atccatccat 34080acatccatcc atcatccatc
catccatcat ccatccaccc atccatcatc catccatcca 34140tcatccatcc atccatctac
ccatccatcc atccatccat ccatccatcc atccacccat 34200ccacctaccc atccactgat
ctccctagca ccctgtctat ccactggtcc ttacatccac 34260acatttatcc aaccttctag
ctgtctgtca gtctccctaa tggaccacca ctccacccat 34320tggcttttct gctcaatctt
ctgtctgggt ctatttatcc atccatccat ctacccaccc 34380aactgaccaa ctgaccatca
cttgcagact atccagcaat aggcaaggtg cagtgaggaa 34440gtgggaataa aacagcagag
atgcggcccc tgccttccaa ggcttatctg ttaggacgat 34500acgatgagtg actctcctgc
cgtgtaggca gattgtgggg cagggaggag gtcagacatg 34560aaaagcttcc tggaggaggt
aggcgtttgg cccttggtga gagctaaaac ttaaatgggc 34620aggaggaaag gagagcggca
aagaccaagt ggtggagtgg aaagttcttt acagtgaaga 34680gcagggagga aaaggtggca
accgggcagg gccagagcct gggagactgc caggctaggt 34740ggggactctg gtctgaaagt
ggaggcatag ttctgctttg aagttccaca ccagaggggg 34800aggcatgatc ttgtggtcag
gagctccagt ctgagaatgg agacactgct ttgcactcaa 34860cagaccagtc tcagtggagg
ggctgggggt gcgggggaca tggcctgctt ttaggaaacc 34920ctaaaggaga ctcaggaaaa
gactctccag tcacctcctg gatcttctgg ctccatcgtt 34980cctgcaccct actttggaag
tctcctttgg ggctcagaga cccaccttct gtgccctgtc 35040cccatcccct ctgtcccagg
ggtgccctgc gggacattca ccttccagtg tgaggaccag 35100agctgcgtga agaagcccaa
cccacagtgt gatgggcggc ccgactgcag ggacggctca 35160gacgagcagc actgtggtga
gccctgcccg gctgcctggg gccctggagc ttgggaggga 35220ggggggtgcc cacagcagga
cgctggaggg aaatctcacc cctgttccct ggtctctctc 35280tatcccaccc tctgccccct
cacacctggg tctttatgat ctctccccct ccattgttct 35340cctgttctct gtctctccat
ctctttcctt tgcccttcct ctctgtctgt ctgcttctcc 35400ccttcccctc ctcctctgtc
caccccacca cctgcccccc atccccagac tgtggcctcc 35460agggcccctc cagtcgcatt
gttggtgggg ccgtgtcctc cgagggtgag tggccatggc 35520aggccagcct ccaggttcgg
ggtcgacaca tctgtggggg cgccctcatc gctgaccgct 35580gggtgataac agctgcccat
tgcttccagg aggacaggta agggggaggg tgtgggggcc 35640taggccataa gaggcaaggg
cagggaaggc tgggtgggcg gtgcactgtg tctgagctct 35700ttgcagatag agggaagggt
ggtgaacccc tcagacaggc tactgtgatg tgggttctag 35760ttctggctcc accaggacct
actgggtccc tggacacatt gttctacctc tctgccatct 35820actttcggta tcttgcttta
agttgggcca gtgattcatt cattcatctc attcactcat 35880tcagcaacac ttgttgtgct
cttactatgt gccaggggct atggtagatg ctggggatac 35940agtaaaggac agaactgccc
tacctggtca taagctatga cactccccca ggtgtgacat 36000gaagtagcag ggagccccca
ggggacatct catcaggcct catggccatc tttcccatct 36060gcttggtggg ctgaaacctc
ccccaatcca cccgcagaca gatctgggct ccagatcctg 36120cccccagaac ctgcacaggg
atcctctttt gtatcctctc tggggcacag gttgctctga 36180ccacctagct ctctttaacc
ccatcccagg ctccgcactg ccctcaggta gagagacccg 36240aaggctgccc gcctgccacg
caggcagctg actgcggcag tccaattcct ccacggtcaa 36300cgcccacccc ctccccacca
ggacccacca acctcgggga actcagagca gcctgggtcc 36360gtaaagtgct aaggaaaaaa
gaaatttgtg tcgagggcct ggccctgtgc tacatttttt 36420agatatacgg tcttactgga
ttctctcaag aacagtcgag tagaaaatgc cgttcccatt 36480ttgcagatga ggtggcagag
gcttagagag gcacacacat gtctagggag ggataaagct 36540ggggcctgga acccaggcag
gccgaggggg tgaaggctga aagctgtacc accagctagg 36600cggccttcag ggagggaagg
gagggctggg tgtggagggc actgtcccag gcggcagttg 36660gctatcctga gggtccctgg
atggggagag gcagcttccc cccaccccac cccaccccac 36720cccaccccac cccagcatgg
cctccccggc gctgtggacg gtgttcctgg gcaaggtgtg 36780gcagaactcg cgctggcctg
gagaggtgtc cttcaaggtg agccgcctac tcctgcatcc 36840gtatcacgaa gaggacagcc
acgactacga cgtggcgctg ttgcagctcg accacccggt 36900ggtgcgctcg gccgccgtgc
gtccagtctg cctgcccgcg cgctcccact tcttcgaacc 36960cggcctgcac tgctggatca
ctggctgggg cgccctgcgc gaaggcggta agcggccggc 37020acgtacggcg ggaggcggag
ggagaccgtg cggagccaga ccgtgcggag ccgcttcgcc 37080acacccggcc tggagaaggg
cggggctggg gggtcccggg gctccacccc acaggccctt 37140tactcctggg attcaaattg
ggctgaattt tacggtacaa aaccaccctt taatgcggcc 37200cataggcccc cgcccctgcc
ctcctagctc ttgccttcat tctggaaggg cattatgtgt 37260ggggcaaagg ggcaggtctg
gggggccact gcccacgtgc aagctccacc tgctgctcct 37320tggcctgcaa gggcggaggc
tcttaattat tagcactttc cacatccagg ctgaatttta 37380ggggaacatg acttcacgta
atccatccaa tagccctggg gcggaagctg tggccccatt 37440ttatggatgg agaaaccaag
gctccacaca cagccagaga ggactggagc agagattaga 37500acccaggact ggctgcctcc
agagcccccg ctcttcctgc tactgctctc agaaacaggg 37560tctctcccct ttctaccttc
actaaccaga gctggctgtc cctggcggcc accgtacagt 37620tttggggaca cagacccagc
tggcaaacct acagacatgc cctgcagcct tagtgttggt 37680ggcttcacaa atgtgtacag
tgacttacaa tctggaggca ggcagggctg cagagatatt 37740ttaaggatgg gaaaactgag
gctcagagga acagtgactt acccaagggg atggcagaag 37800tcatggcaaa gcaaaggctg
gttcattcac tattccttca ctcattcagt cactcaatga 37860cactttctga gcaccagcta
tgtaccaggt atggggttaa gggaagggta catcaggatg 37920gagagagaac attctcgggg
gagacagtga taagagctgg catggatggg gaggtgtagg 37980gacagtggag acacagaggc
ggctcctgcc taggtagggt caagggaggc ttctagggga 38040gggttgttta agctgaggcc
tggaagatga gttggcaaca tccagacaaa gggaaaagac 38100attcaggtga agacacaggt
gccaagacag gaagacctga gaacatccgc agcctgccag 38160aggggccaag gtggggggca
ggtgtgcctg ggcaaggagc agccagtgta aggatcttgg 38220gccaggagtt ctccctccta
cctgcacctt agaaccatgc gtggttcaag aaaaaccctt 38280gtatcaaggc ttcccagggg
actgtgatat gctgccctcc tggagaagca ttggggtgga 38340ctgcagagtt ggggctctgc
agagttgtaa ggaaacggtg aaggggtcag atgtgggctt 38400tggaaacatc cccaggtgct
ataacatagc agcgaagagc cagccagagc ccagaggtgc 38460ctgaacagac agaggtgggg
gacaagacgc tggagtaaga cactcatcca cacgggcttc 38520tttttttttt gagatggagt
ttcactcttg ttgcccaggc tggagtgcaa tggtatgatc 38580ttggctcact acaacctctg
cctcctgggt tcaagcgatt ctcctgcctc aacctcctga 38640gtaactggga ttacaggcat
gcaccaccac acacagctaa ttttgtattt ttagtagaga 38700cagggtttct ccatgttggt
caggctggtc ttgaactctt gacctcaggt gatctgtccg 38760ccttggccac ccaaagtgct
gggattacag gcgtgagcca cttcgcctgg ctctccacat 38820gggctttggt caggggctct
gtctccatga accccacaga gaaagagcta gaataaagtg 38880acagggaggc agaggggcag
gtgcaacccc agcagaggta agggtgggca gagcaggaga 38940gaagcaggct cctgagatgc
aaaggagcgt tagggagaac aggtgctcca ggttccttag 39000atctcacttc tgcccttgac
cacggacagg ccccaccagc aatgctctgc agaaagtgga 39060cgtgcagttg atcccacagg
acctgtgcag cgaggcctat cgctaccagg tgacgccacg 39120catgctgtgt gccggctacc
gcaagggcaa gaaggatgcc tgccaggtga gtacccccag 39180tgtgggaggg agaaagaaag
gatgctgctc acatcatcag ggtctggccc tatgctcaca 39240tcagcctgct gaagcctccc
atcctcccag aaaggtggcg atggccgccc tcactttaca 39300gaagaggaga ctgggggttg
gaagggttga ggagcttgcc caaggttgca gagccatgga 39360tcagaagaaa tgctgtgacg
ggcaggtgtt aggctcaaac ccagttctgc tccttgccca 39420tcacaaggca ctaggcccag
ggtcccacag tgaggtggat gcaaggaaga agaaaggcgt 39480gtcagccaca gaagggcggt
ggagacagag tgggggtgtg gggacacagc cacagttcca 39540ggagggccca ggctggctgg
aggacaaaga gggttggctt ggactctctc catttagcag 39600gcgaggaaaa agcagagctt
taagactgaa cgtgagtctc tggcacccag tcaattccca 39660acagtcagga cttaatcccc
atggcccctc gcctggaaag ggggtgccct taccctgctt 39720cagtcctttc tcctttcccc
ctttcagggt gactcgggtg gtccgctggt atgcaaggca 39780ctcagtggcc gctggttcct
ggcagggctg gtcagctggg gcctgggctg tggccggcct 39840aactacttcg gcgtctacac
ccgcatcaca ggtgtgatcg gctggatcca gcaagtggtg 39900acctgaggaa ctgcccccct
gcagagcagg tcccacctct tggactcaga gagcccaggg 39960caattgccaa gcagggggac
aagtattctg gggggagggg ggcgcgagca ggccctgtgg 40020tggcaggagg tggcatcttg
tcttgtccct gatgtctgct ccagtgatgg caggaggatg 40080gaggagtgcc agcagctggg
ggtcaagacg tcccctaggg acccaggccc acacccagcc 40140cttctgcctc ccgattctct
ctcctctgtc cccttcctcc actgctgcct attgcaagga 40200agtggctcag cagcaagaat
gctggctcta cgtccccagg agtgtctgag ctgtgcccca 40260ctctgtacag aggctgcttg
ggcagccttg cctctagaga gcagatgcca gcttcggaag 40320cccctggtct aacttgggat
ctgggaatgg aaggtgcccc cataggaggg gaccctcaca 40380gccccgggga ctgccaggtg
ggccggctgc caccgtaagc caaaaaaggt ggggaagccc 40440tgactccaag gtccttgccc
cacccctgcc tgccacctgg cccctcacag cccagaccct 40500caccggcagg tgagctcagc
tgccctttgg aataaagctg cctgatccaa gcccctctgc 40560tggagtttga atggggaccc
gggcaccagc cttacgccct tgactgaagc agtccctgct 40620tccagctcag cctgattgac
aagtgtccag aaggccaagg tgggctcagt ggcagcaggc 40680gtggccactg agggccactg
agggctggga cctctggggc agctgcccag gtcctaggag 40740aaatgctggg aaggcaatcg
tttggggacc ctcaggtcac agggagggat gtgaggagca 40800atggtctcct tttggaacct
taaaggaaac aggctcagag aggcggttaa gacatcctca 40860tggtggcact gggggttagg
agtggaggtg gcatagactc cggtctccca gttccccgtc 40920tgccatggcc ccctccagcg
cgacactcat tccctttgaa ttctttgaat cattgagtag 40980gcactgtgct ggcgccacag
gggtgaagga cctggctcct gaccccagaa gcaatgggga 41040tgatccagtg ggaaggggat
ggaggggagc gcagaccggg caagtcaagg caagctgcct 41100ggaggctgtg agacttgagc
tggggttcag aggtagtcaa ggtgggaata tccgggaggg 41160atattccagg caggggaaga
gcatgtgcaa aggcacagag tcccggaaga atgagacaca 41220ctaggaccca gcaagccgag
tgagtgttac aacagagctt gagaggggaa ggactgaaga 41280attcagaggg gcaaaccgag
gcgggatagc agagcctgga gttgagccaa ggatttgacc 41340ctgcaagttc tgtggagcca
tggtaggctc tatagcatag gggtgacatg agtggactca 41400cattttggaa ccagccttgg
caccagtgtg cagggagtgg caggcaggga ggctgggtag 41460gccactgcag gattccggga
aggagaggat gggccgggac tgagcggcgc cacgggatgt 41520actggaggat gatttcggac
ccctgagggc agttgtgacg gagccggggg acccgctgga 41580ggtgagggtg ggtgctcaag
tgtggacaac tctttctgga agcctaactg ggagcggaag 41640ggacagaggg cgcttcagag
gggccctaga ctgaagaggg gtttttccag catgggcgct 41700gctgccaggt ctgtgggtga
atgaggcaga aggggaacca gggacgggaa gcacccacct 41760gggtcctgcc aggaggagcc
ggggcagctg ggcgagcagg gggcgtctcc agagcaggtg 41820ggcagaacac atgcagaatc
ccttgggtga tctggaatca ccgtgggccc taccccagtc 41880ttcgtcggaa tcctggaggg
gtgggggatg tcatctgttc tcctaacaag cctcctggcg 41940actcttttgc aaggatagtt
ggaccccaaa agtgaggcca gctttgaagt ggagcgtcct 42000c
42001
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